// Retained and Spliced Intron # retained_intron 43037-43442 (orient:-) max_ev_support = 3 # spliced_intron 43037-43442 (orient:-) max_ev_support = 2 scaffold_1 - intron 43037-43442 asmbl_2,asmbl_3,asmbl_6,asmbl_7 scaffold_1 - retained_intron 43037-43442 asmbl_1 // Exon Skipping and Retention # skipped_exon 43470-45446 (orient:-) max_ev_support = 1 # retained_exon 44039-44086 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 44039-44086 asmbl_2 scaffold_1 - intron_skips_exon 43470-45446 asmbl_3 // Exon Skipping and Retention # skipped_exon 44087-45989 (orient:-) max_ev_support = 2 # retained_exon 45447-45506 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 45447-45506 asmbl_3 scaffold_1 - intron_skips_exon 44087-45989 asmbl_2 // Retained and Spliced Intron # retained_intron 39649-39790 (orient:-) max_ev_support = 1 # spliced_intron 39649-39790 (orient:-) max_ev_support = 2 scaffold_1 - intron 39649-39790 asmbl_1,asmbl_2,asmbl_3,asmbl_7 scaffold_1 - retained_intron 39649-39790 asmbl_6 // Retained and Spliced Intron # retained_intron 175065-175198 (orient:-) max_ev_support = 3 # spliced_intron 175065-175198 (orient:-) max_ev_support = 2 scaffold_1 - intron 175065-175198 asmbl_14,asmbl_15 scaffold_1 - retained_intron 175065-175198 asmbl_11,asmbl_12,asmbl_13 // Retained and Spliced Intron # retained_intron 175417-175492 (orient:-) max_ev_support = 2 # spliced_intron 175417-175492 (orient:-) max_ev_support = 2 scaffold_1 - intron 175417-175492 asmbl_11,asmbl_13,asmbl_14,asmbl_15 scaffold_1 - retained_intron 175417-175492 asmbl_12 // Retained and Spliced Intron # retained_intron 857694-857888 (orient:-) max_ev_support = 2 # spliced_intron 857694-857888 (orient:-) max_ev_support = 2 scaffold_1 - intron 857694-857888 asmbl_26,asmbl_27 scaffold_1 - retained_intron 857694-857888 asmbl_25 // Retained and Spliced Intron # retained_intron 907269-907398 (orient:-) max_ev_support = 1 # spliced_intron 907269-907398 (orient:-) max_ev_support = 1 scaffold_1 - intron 907269-907398 asmbl_35 scaffold_1 - retained_intron 907269-907398 asmbl_34 // Retained and Spliced Intron # retained_intron 907269-907587 (orient:-) max_ev_support = 1 # spliced_intron 907269-907587 (orient:-) max_ev_support = 1 scaffold_1 - intron 907269-907587 asmbl_33 scaffold_1 - retained_intron 907269-907587 asmbl_34 // Exon Skipping and Retention # skipped_exon 977974-978459 (orient:-) max_ev_support = 3 # retained_exon 978085-978183 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 978085-978183 asmbl_43 scaffold_1 - intron_skips_exon 977974-978459 asmbl_42 // Retained and Spliced Intron # retained_intron 1216033-1216212 (orient:-) max_ev_support = 2 # spliced_intron 1216033-1216212 (orient:-) max_ev_support = 3 scaffold_1 - intron 1216033-1216212 asmbl_47,asmbl_49,asmbl_50,asmbl_51 scaffold_1 - retained_intron 1216033-1216212 asmbl_48 // Retained and Spliced Intron # retained_intron 1250261-1250375 (orient:-) max_ev_support = 3 # spliced_intron 1250261-1250375 (orient:-) max_ev_support = 3 scaffold_1 - intron 1250261-1250375 asmbl_56 scaffold_1 - retained_intron 1250261-1250375 asmbl_57 // Retained and Spliced Intron # retained_intron 1271968-1272117 (orient:-) max_ev_support = 2 # spliced_intron 1271968-1272117 (orient:-) max_ev_support = 3 scaffold_1 - intron 1271968-1272117 asmbl_60 scaffold_1 - retained_intron 1271968-1272117 asmbl_61 // Retained and Spliced Intron # retained_intron 1420788-1420966 (orient:-) max_ev_support = 2 # spliced_intron 1420788-1420966 (orient:-) max_ev_support = 3 scaffold_1 - intron 1420788-1420966 asmbl_65 scaffold_1 - retained_intron 1420788-1420966 asmbl_66 // Retained and Spliced Intron # retained_intron 1432116-1432283 (orient:-) max_ev_support = 3 # spliced_intron 1432116-1432283 (orient:-) max_ev_support = 1 scaffold_1 - intron 1432116-1432283 asmbl_70 scaffold_1 - retained_intron 1432116-1432283 asmbl_68 // Retained and Spliced Intron # retained_intron 1608748-1608955 (orient:-) max_ev_support = 2 # spliced_intron 1608748-1608955 (orient:-) max_ev_support = 1 scaffold_1 - intron 1608748-1608955 asmbl_81 scaffold_1 - retained_intron 1608748-1608955 asmbl_80 // Retained and Spliced Intron # retained_intron 1982208-1983075 (orient:-) max_ev_support = 1 # spliced_intron 1982208-1983075 (orient:-) max_ev_support = 1 scaffold_1 - intron 1982208-1983075 asmbl_97 scaffold_1 - retained_intron 1982208-1983075 asmbl_98 // Retained and Spliced Intron # retained_intron 2782343-2782775 (orient:-) max_ev_support = 2 # spliced_intron 2782343-2782775 (orient:-) max_ev_support = 2 scaffold_1 - intron 2782343-2782775 asmbl_131 scaffold_1 - retained_intron 2782343-2782775 asmbl_132,asmbl_133 // Exon Skipping and Retention # skipped_exon 3146137-3146608 (orient:-) max_ev_support = 2 # retained_exon 3146428-3146530 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3146428-3146530 asmbl_135 scaffold_1 - intron_skips_exon 3146137-3146608 asmbl_136 // Retained and Spliced Intron # retained_intron 3270179-3270358 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270358 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270179-3270358 asmbl_142 scaffold_1 - retained_intron 3270179-3270358 asmbl_140,asmbl_144 // Retained and Spliced Intron # retained_intron 3270179-3270373 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270373 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270179-3270373 asmbl_143 scaffold_1 - retained_intron 3270179-3270373 asmbl_140,asmbl_144 // Retained and Spliced Intron # retained_intron 3270179-3270864 (orient:-) max_ev_support = 1 # spliced_intron 3270179-3270864 (orient:-) max_ev_support = 2 scaffold_1 - intron 3270179-3270864 asmbl_139,asmbl_141 scaffold_1 - retained_intron 3270179-3270864 asmbl_140 // Retained and Spliced Intron # retained_intron 3270497-3270864 (orient:-) max_ev_support = 1 # spliced_intron 3270497-3270864 (orient:-) max_ev_support = 1 scaffold_1 - intron 3270497-3270864 asmbl_143,asmbl_144 scaffold_1 - retained_intron 3270497-3270864 asmbl_140,asmbl_142 // Exon Skipping and Retention # skipped_exon 3270179-3270864 (orient:-) max_ev_support = 2 # retained_exon 3270374-3270496 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 3270374-3270496 asmbl_143 scaffold_1 - intron_skips_exon 3270179-3270864 asmbl_139,asmbl_141 // Exon Skipping and Retention # skipped_exon 3496862-3497688 (orient:-) max_ev_support = 1 # retained_exon 3497332-3497448 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3497332-3497448 asmbl_146,asmbl_147,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_158 scaffold_1 - intron_skips_exon 3496862-3497688 asmbl_149,asmbl_156,asmbl_157 // Exon Skipping and Retention # skipped_exon 3497794-3498653 (orient:-) max_ev_support = 1 # retained_exon 3498449-3498541 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 3498449-3498541 asmbl_146,asmbl_149,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_158 scaffold_1 - intron_skips_exon 3497794-3498653 asmbl_147,asmbl_150,asmbl_156,asmbl_157 // Retained and Spliced Intron # retained_intron 3498732-3498894 (orient:-) max_ev_support = 1 # spliced_intron 3498732-3498894 (orient:-) max_ev_support = 2 scaffold_1 - intron 3498732-3498894 asmbl_146,asmbl_147,asmbl_149,asmbl_150,asmbl_151,asmbl_152,asmbl_153,asmbl_154,asmbl_155,asmbl_156,asmbl_157,asmbl_158 scaffold_1 - retained_intron 3498732-3498894 asmbl_148 // Retained and Spliced Intron # retained_intron 3493880-3494497 (orient:-) max_ev_support = 1 # spliced_intron 3493880-3494497 (orient:-) max_ev_support = 2 scaffold_1 - intron 3493880-3494497 asmbl_146,asmbl_147,asmbl_149,asmbl_150,asmbl_154,asmbl_155,asmbl_156,asmbl_158 scaffold_1 - retained_intron 3493880-3494497 asmbl_151,asmbl_152,asmbl_153,asmbl_157 // Exon Skipping and Retention # skipped_exon 3502214-3503905 (orient:-) max_ev_support = 2 # retained_exon 3503419-3503774 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 3503419-3503499,3503673-3503774 asmbl_152,asmbl_154,asmbl_158 scaffold_1 - intron_skips_exon 3502214-3503905 asmbl_146,asmbl_147,asmbl_148,asmbl_149,asmbl_150,asmbl_151,asmbl_153,asmbl_155,asmbl_156,asmbl_157 // Retained and Spliced Intron # retained_intron 4010865-4010976 (orient:-) max_ev_support = 2 # spliced_intron 4010865-4010976 (orient:-) max_ev_support = 1 scaffold_1 - intron 4010865-4010976 asmbl_177 scaffold_1 - retained_intron 4010865-4010976 asmbl_176 // Retained and Spliced Intron # retained_intron 4386393-4386813 (orient:-) max_ev_support = 3 # spliced_intron 4386393-4386813 (orient:-) max_ev_support = 2 scaffold_1 - intron 4386393-4386813 asmbl_188 scaffold_1 - retained_intron 4386393-4386813 asmbl_187 // Retained and Spliced Intron # retained_intron 4389591-4389688 (orient:-) max_ev_support = 2 # spliced_intron 4389591-4389688 (orient:-) max_ev_support = 2 scaffold_1 - intron 4389591-4389688 asmbl_193 scaffold_1 - retained_intron 4389591-4389688 asmbl_192 // Retained and Spliced Intron # retained_intron 4567214-4567837 (orient:-) max_ev_support = 2 # spliced_intron 4567214-4567837 (orient:-) max_ev_support = 2 scaffold_1 - intron 4567214-4567837 asmbl_206,asmbl_211 scaffold_1 - retained_intron 4567214-4567837 asmbl_205,asmbl_209 // Exon Skipping and Retention # skipped_exon 4567214-4568661 (orient:-) max_ev_support = 2 # retained_exon 4567838-4567860 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 4567838-4567860 asmbl_206,asmbl_211 scaffold_1 - intron_skips_exon 4567214-4568661 asmbl_201,asmbl_204 // Retained and Spliced Intron # retained_intron 4864196-4864311 (orient:-) max_ev_support = 2 # spliced_intron 4864196-4864311 (orient:-) max_ev_support = 2 scaffold_1 - intron 4864196-4864311 asmbl_222 scaffold_1 - retained_intron 4864196-4864311 asmbl_221 // Retained and Spliced Intron # retained_intron 4864390-4864489 (orient:-) max_ev_support = 2 # spliced_intron 4864390-4864489 (orient:-) max_ev_support = 2 scaffold_1 - intron 4864390-4864489 asmbl_221 scaffold_1 - retained_intron 4864390-4864489 asmbl_222 // Retained and Spliced Intron # retained_intron 4874711-4874784 (orient:-) max_ev_support = 1 # spliced_intron 4874711-4874784 (orient:-) max_ev_support = 1 scaffold_1 - intron 4874711-4874784 asmbl_225 scaffold_1 - retained_intron 4874711-4874784 asmbl_224 // Retained and Spliced Intron # retained_intron 4927829-4928203 (orient:-) max_ev_support = 1 # spliced_intron 4927829-4928203 (orient:-) max_ev_support = 2 scaffold_1 - intron 4927829-4928203 asmbl_232 scaffold_1 - retained_intron 4927829-4928203 asmbl_233 // Retained and Spliced Intron # retained_intron 5220774-5220883 (orient:-) max_ev_support = 1 # spliced_intron 5220774-5220883 (orient:-) max_ev_support = 2 scaffold_1 - intron 5220774-5220883 asmbl_251,asmbl_252 scaffold_1 - retained_intron 5220774-5220883 asmbl_253 // Retained and Spliced Intron # retained_intron 5542906-5543635 (orient:-) max_ev_support = 2 # spliced_intron 5542906-5543635 (orient:-) max_ev_support = 2 scaffold_1 - intron 5542906-5543635 asmbl_274 scaffold_1 - retained_intron 5542906-5543635 asmbl_275 // Retained and Spliced Intron # retained_intron 5543912-5544420 (orient:-) max_ev_support = 2 # spliced_intron 5543912-5544420 (orient:-) max_ev_support = 2 scaffold_1 - intron 5543912-5544420 asmbl_274 scaffold_1 - retained_intron 5543912-5544420 asmbl_276 // Retained and Spliced Intron # retained_intron 5624546-5624630 (orient:-) max_ev_support = 1 # spliced_intron 5624546-5624630 (orient:-) max_ev_support = 2 scaffold_1 - intron 5624546-5624630 asmbl_284 scaffold_1 - retained_intron 5624546-5624630 asmbl_285 // Exon Skipping and Retention # skipped_exon 5731295-5731676 (orient:-) max_ev_support = 2 # retained_exon 5731445-5731596 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 5731445-5731596 asmbl_294,asmbl_295,asmbl_297 scaffold_1 - intron_skips_exon 5731295-5731676 asmbl_296 // Retained and Spliced Intron # retained_intron 5731015-5731118 (orient:-) max_ev_support = 1 # spliced_intron 5731015-5731118 (orient:-) max_ev_support = 2 scaffold_1 - intron 5731015-5731118 asmbl_294,asmbl_295 scaffold_1 - retained_intron 5731015-5731118 asmbl_297 // Retained and Spliced Intron # retained_intron 5736786-5736896 (orient:-) max_ev_support = 2 # spliced_intron 5736786-5736896 (orient:-) max_ev_support = 1 scaffold_1 - intron 5736786-5736896 asmbl_300 scaffold_1 - retained_intron 5736786-5736896 asmbl_299 // Retained and Spliced Intron # retained_intron 5746244-5746355 (orient:-) max_ev_support = 1 # spliced_intron 5746244-5746355 (orient:-) max_ev_support = 2 scaffold_1 - intron 5746244-5746355 asmbl_303 scaffold_1 - retained_intron 5746244-5746355 asmbl_304 // Retained and Spliced Intron # retained_intron 5962878-5963181 (orient:-) max_ev_support = 2 # spliced_intron 5962878-5963181 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962878-5963181 asmbl_308,asmbl_310,asmbl_311,asmbl_312 scaffold_1 - retained_intron 5962878-5963181 asmbl_309 // Retained and Spliced Intron # retained_intron 5962385-5962489 (orient:-) max_ev_support = 1 # spliced_intron 5962385-5962489 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962385-5962489 asmbl_308,asmbl_310 scaffold_1 - retained_intron 5962385-5962489 asmbl_311,asmbl_312 // Retained and Spliced Intron # retained_intron 5962592-5962698 (orient:-) max_ev_support = 1 # spliced_intron 5962592-5962698 (orient:-) max_ev_support = 2 scaffold_1 - intron 5962592-5962698 asmbl_308,asmbl_312 scaffold_1 - retained_intron 5962592-5962698 asmbl_311 // Retained and Spliced Intron # retained_intron 5962642-5962827 (orient:-) max_ev_support = 1 # spliced_intron 5962642-5962827 (orient:-) max_ev_support = 1 scaffold_1 - intron 5962642-5962827 asmbl_310 scaffold_1 - retained_intron 5962642-5962827 asmbl_311 // Exon Skipping and Retention # skipped_exon 5996412-5997450 (orient:-) max_ev_support = 2 # retained_exon 5996766-5996816 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 5996766-5996816 asmbl_317 scaffold_1 - intron_skips_exon 5996412-5997450 asmbl_315,asmbl_319 // Exon Skipping and Retention # skipped_exon 6126767-6127234 (orient:-) max_ev_support = 1 # retained_exon 6126972-6127069 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6126972-6127069 asmbl_322,asmbl_323 scaffold_1 - intron_skips_exon 6126767-6127234 asmbl_325 // Retained and Spliced Intron # retained_intron 6215109-6215240 (orient:-) max_ev_support = 3 # spliced_intron 6215109-6215240 (orient:-) max_ev_support = 3 scaffold_1 - intron 6215109-6215240 asmbl_328 scaffold_1 - retained_intron 6215109-6215240 asmbl_327 // Retained and Spliced Intron # retained_intron 6283987-6284587 (orient:-) max_ev_support = 3 # spliced_intron 6283987-6284587 (orient:-) max_ev_support = 3 scaffold_1 - intron 6283987-6284587 asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350 scaffold_1 - retained_intron 6283987-6284587 asmbl_339 // Retained and Spliced Intron # retained_intron 6283987-6285080 (orient:-) max_ev_support = 5 # spliced_intron 6283987-6285080 (orient:-) max_ev_support = 2 scaffold_1 - intron 6283987-6285080 asmbl_341,asmbl_349,asmbl_351 scaffold_1 - retained_intron 6283987-6285080 asmbl_339 // Retained and Spliced Intron # retained_intron 6284662-6285080 (orient:-) max_ev_support = 3 # spliced_intron 6284662-6285080 (orient:-) max_ev_support = 3 scaffold_1 - intron 6284662-6285080 asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350 scaffold_1 - retained_intron 6284662-6285080 asmbl_339 // Exon Skipping and Retention # skipped_exon 6283222-6283902 (orient:-) max_ev_support = 2 # retained_exon 6283604-6283664 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6283604-6283664 asmbl_340,asmbl_343,asmbl_348,asmbl_350,asmbl_351 scaffold_1 - intron_skips_exon 6283222-6283902 asmbl_341,asmbl_342,asmbl_349 // Exon Skipping and Retention # skipped_exon 6283987-6285080 (orient:-) max_ev_support = 2 # retained_exon 6284588-6284661 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 6284588-6284661 asmbl_343,asmbl_345,asmbl_347,asmbl_348,asmbl_350 scaffold_1 - intron_skips_exon 6283987-6285080 asmbl_341,asmbl_349,asmbl_351 // Retained and Spliced Intron # retained_intron 6283222-6283603 (orient:-) max_ev_support = 1 # spliced_intron 6283222-6283603 (orient:-) max_ev_support = 2 scaffold_1 - intron 6283222-6283603 asmbl_340,asmbl_343,asmbl_348,asmbl_350,asmbl_351 scaffold_1 - retained_intron 6283222-6283603 asmbl_345,asmbl_352 // Retained and Spliced Intron # retained_intron 6299655-6299772 (orient:-) max_ev_support = 3 # spliced_intron 6299655-6299772 (orient:-) max_ev_support = 2 scaffold_1 - intron 6299655-6299772 asmbl_354,asmbl_355,asmbl_357 scaffold_1 - retained_intron 6299655-6299772 asmbl_353,asmbl_358 // Exon Skipping and Retention # skipped_exon 6299428-6299676 (orient:-) max_ev_support = 1 # retained_exon 6299554-6299654 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6299554-6299654 asmbl_354 scaffold_1 - intron_skips_exon 6299428-6299676 asmbl_359 // Retained and Spliced Intron # retained_intron 6299428-6299549 (orient:-) max_ev_support = 1 # spliced_intron 6299428-6299549 (orient:-) max_ev_support = 1 scaffold_1 - intron 6299428-6299549 asmbl_357 scaffold_1 - retained_intron 6299428-6299549 asmbl_355,asmbl_358 // Retained and Spliced Intron # retained_intron 6299428-6299553 (orient:-) max_ev_support = 1 # spliced_intron 6299428-6299553 (orient:-) max_ev_support = 3 scaffold_1 - intron 6299428-6299553 asmbl_353,asmbl_354 scaffold_1 - retained_intron 6299428-6299553 asmbl_355,asmbl_358 // Retained and Spliced Intron # retained_intron 6297508-6297670 (orient:-) max_ev_support = 1 # spliced_intron 6297508-6297670 (orient:-) max_ev_support = 3 scaffold_1 - intron 6297508-6297670 asmbl_353,asmbl_354,asmbl_355,asmbl_357,asmbl_358,asmbl_359 scaffold_1 - retained_intron 6297508-6297670 asmbl_356 // Retained and Spliced Intron # retained_intron 6299428-6299676 (orient:-) max_ev_support = 1 # spliced_intron 6299428-6299676 (orient:-) max_ev_support = 1 scaffold_1 - intron 6299428-6299676 asmbl_359 scaffold_1 - retained_intron 6299428-6299676 asmbl_358 // Retained and Spliced Intron # retained_intron 6320286-6320404 (orient:-) max_ev_support = 1 # spliced_intron 6320286-6320404 (orient:-) max_ev_support = 2 scaffold_1 - intron 6320286-6320404 asmbl_364,asmbl_366 scaffold_1 - retained_intron 6320286-6320404 asmbl_365 // Retained and Spliced Intron # retained_intron 6496620-6496782 (orient:-) max_ev_support = 2 # spliced_intron 6496620-6496782 (orient:-) max_ev_support = 1 scaffold_1 - intron 6496620-6496782 asmbl_374 scaffold_1 - retained_intron 6496620-6496782 asmbl_371 // Exon Skipping and Retention # skipped_exon 6496620-6497024 (orient:-) max_ev_support = 1 # retained_exon 6496783-6496819 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 6496783-6496819 asmbl_374 scaffold_1 - intron_skips_exon 6496620-6497024 asmbl_372 // Retained and Spliced Intron # retained_intron 6576083-6576214 (orient:-) max_ev_support = 2 # spliced_intron 6576083-6576214 (orient:-) max_ev_support = 2 scaffold_1 - intron 6576083-6576214 asmbl_381,asmbl_383 scaffold_1 - retained_intron 6576083-6576214 asmbl_382 // Exon Skipping and Retention # skipped_exon 6830779-6831856 (orient:-) max_ev_support = 1 # retained_exon 6830890-6831526 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6830890-6830974,6831405-6831526 asmbl_393 scaffold_1 - intron_skips_exon 6830779-6831856 asmbl_396 // Exon Skipping and Retention # skipped_exon 6830975-6831856 (orient:-) max_ev_support = 2 # retained_exon 6831405-6831526 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 6831405-6831526 asmbl_393 scaffold_1 - intron_skips_exon 6830975-6831856 asmbl_394 // Retained and Spliced Intron # retained_intron 6830779-6830889 (orient:-) max_ev_support = 1 # spliced_intron 6830779-6830889 (orient:-) max_ev_support = 2 scaffold_1 - intron 6830779-6830889 asmbl_393,asmbl_394 scaffold_1 - retained_intron 6830779-6830889 asmbl_395 // Exon Skipping and Retention # skipped_exon 7283528-7284758 (orient:-) max_ev_support = 2 # retained_exon 7284196-7284224 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 7284196-7284224 asmbl_431 scaffold_1 - intron_skips_exon 7283528-7284758 asmbl_432 // Exon Skipping and Retention # skipped_exon 7291709-7292433 (orient:-) max_ev_support = 1 # retained_exon 7291912-7292019 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 7291912-7292019 asmbl_434 scaffold_1 - intron_skips_exon 7291709-7292433 asmbl_437 // Retained and Spliced Intron # retained_intron 7370029-7370112 (orient:-) max_ev_support = 3 # spliced_intron 7370029-7370112 (orient:-) max_ev_support = 1 scaffold_1 - intron 7370029-7370112 asmbl_440,asmbl_441 scaffold_1 - retained_intron 7370029-7370112 asmbl_439,asmbl_442 // Retained and Spliced Intron # retained_intron 7370071-7370112 (orient:-) max_ev_support = 3 # spliced_intron 7370071-7370112 (orient:-) max_ev_support = 1 scaffold_1 - intron 7370071-7370112 asmbl_443 scaffold_1 - retained_intron 7370071-7370112 asmbl_439,asmbl_442 // Retained and Spliced Intron # retained_intron 7370155-7370238 (orient:-) max_ev_support = 3 # spliced_intron 7370155-7370238 (orient:-) max_ev_support = 1 scaffold_1 - intron 7370155-7370238 asmbl_442 scaffold_1 - retained_intron 7370155-7370238 asmbl_439,asmbl_440,asmbl_441,asmbl_443 // Exon Skipping and Retention # skipped_exon 7374398-7376636 (orient:-) max_ev_support = 1 # retained_exon 7376407-7376531 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 7376407-7376531 asmbl_441 scaffold_1 - intron_skips_exon 7374398-7376636 asmbl_443 // Retained and Spliced Intron # retained_intron 7801216-7801376 (orient:-) max_ev_support = 1 # spliced_intron 7801216-7801376 (orient:-) max_ev_support = 2 scaffold_1 - intron 7801216-7801376 asmbl_448 scaffold_1 - retained_intron 7801216-7801376 asmbl_449 // Exon Skipping and Retention # skipped_exon 8631689-8634025 (orient:-) max_ev_support = 2 # retained_exon 8633609-8633664 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 8633609-8633664 asmbl_467 scaffold_1 - intron_skips_exon 8631689-8634025 asmbl_466,asmbl_471 // Retained and Spliced Intron # retained_intron 8651374-8651512 (orient:-) max_ev_support = 3 # spliced_intron 8651374-8651512 (orient:-) max_ev_support = 1 scaffold_1 - intron 8651374-8651512 asmbl_484 scaffold_1 - retained_intron 8651374-8651512 asmbl_473,asmbl_475 // Retained and Spliced Intron # retained_intron 8644831-8644990 (orient:-) max_ev_support = 1 # spliced_intron 8644831-8644990 (orient:-) max_ev_support = 3 scaffold_1 - intron 8644831-8644990 asmbl_473,asmbl_481 scaffold_1 - retained_intron 8644831-8644990 asmbl_474,asmbl_476,asmbl_482,asmbl_483 // Retained and Spliced Intron # retained_intron 8645480-8646817 (orient:-) max_ev_support = 3 # spliced_intron 8645480-8646817 (orient:-) max_ev_support = 3 scaffold_1 - intron 8645480-8646817 asmbl_473,asmbl_482,asmbl_483 scaffold_1 - retained_intron 8645480-8646817 asmbl_474,asmbl_476 // Retained and Spliced Intron # retained_intron 8645118-8645235 (orient:-) max_ev_support = 1 # spliced_intron 8645118-8645235 (orient:-) max_ev_support = 3 scaffold_1 - intron 8645118-8645235 asmbl_473,asmbl_474,asmbl_483 scaffold_1 - retained_intron 8645118-8645235 asmbl_476,asmbl_482 // Retained and Spliced Intron # retained_intron 8645316-8645414 (orient:-) max_ev_support = 1 # spliced_intron 8645316-8645414 (orient:-) max_ev_support = 3 scaffold_1 - intron 8645316-8645414 asmbl_473,asmbl_474,asmbl_483 scaffold_1 - retained_intron 8645316-8645414 asmbl_476,asmbl_482 // Retained and Spliced Intron # retained_intron 8643305-8643562 (orient:-) max_ev_support = 1 # spliced_intron 8643305-8643562 (orient:-) max_ev_support = 3 scaffold_1 - intron 8643305-8643562 asmbl_473,asmbl_474,asmbl_476,asmbl_482,asmbl_483 scaffold_1 - retained_intron 8643305-8643562 asmbl_481 // Retained and Spliced Intron # retained_intron 8643816-8644313 (orient:-) max_ev_support = 1 # spliced_intron 8643816-8644313 (orient:-) max_ev_support = 3 scaffold_1 - intron 8643816-8644313 asmbl_473,asmbl_474,asmbl_476,asmbl_482,asmbl_483 scaffold_1 - retained_intron 8643816-8644313 asmbl_481 // Retained and Spliced Intron # retained_intron 8733024-8733104 (orient:-) max_ev_support = 1 # spliced_intron 8733024-8733104 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733024-8733104 asmbl_488,asmbl_490 scaffold_1 - retained_intron 8733024-8733104 asmbl_489 // Retained and Spliced Intron # retained_intron 8733924-8734054 (orient:-) max_ev_support = 1 # spliced_intron 8733924-8734054 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733924-8734054 asmbl_488,asmbl_489,asmbl_491 scaffold_1 - retained_intron 8733924-8734054 asmbl_490 // Retained and Spliced Intron # retained_intron 8733191-8733283 (orient:-) max_ev_support = 1 # spliced_intron 8733191-8733283 (orient:-) max_ev_support = 2 scaffold_1 - intron 8733191-8733283 asmbl_488,asmbl_489,asmbl_490 scaffold_1 - retained_intron 8733191-8733283 asmbl_491 // Retained and Spliced Intron # retained_intron 8759445-8759617 (orient:-) max_ev_support = 2 # spliced_intron 8759445-8759617 (orient:-) max_ev_support = 1 scaffold_1 - intron 8759445-8759617 asmbl_494 scaffold_1 - retained_intron 8759445-8759617 asmbl_493,asmbl_497,asmbl_502 // Retained and Spliced Intron # retained_intron 8990419-8991134 (orient:-) max_ev_support = 2 # spliced_intron 8990419-8991134 (orient:-) max_ev_support = 1 scaffold_1 - intron 8990419-8991134 asmbl_515 scaffold_1 - retained_intron 8990419-8991134 asmbl_514 // Retained and Spliced Intron # retained_intron 9031944-9032149 (orient:-) max_ev_support = 2 # spliced_intron 9031944-9032149 (orient:-) max_ev_support = 3 scaffold_1 - intron 9031944-9032149 asmbl_519 scaffold_1 - retained_intron 9031944-9032149 asmbl_520 // Retained and Spliced Intron # retained_intron 9163722-9163832 (orient:-) max_ev_support = 1 # spliced_intron 9163722-9163832 (orient:-) max_ev_support = 1 scaffold_1 - intron 9163722-9163832 asmbl_521,asmbl_523,asmbl_524 scaffold_1 - retained_intron 9163722-9163832 asmbl_522 // Retained and Spliced Intron # retained_intron 9163929-9164016 (orient:-) max_ev_support = 1 # spliced_intron 9163929-9164016 (orient:-) max_ev_support = 1 scaffold_1 - intron 9163929-9164016 asmbl_521,asmbl_523 scaffold_1 - retained_intron 9163929-9164016 asmbl_522,asmbl_524 // Retained and Spliced Intron # retained_intron 9164643-9164743 (orient:-) max_ev_support = 1 # spliced_intron 9164643-9164743 (orient:-) max_ev_support = 1 scaffold_1 - intron 9164643-9164743 asmbl_521 scaffold_1 - retained_intron 9164643-9164743 asmbl_523 // Retained and Spliced Intron # retained_intron 9513340-9513605 (orient:-) max_ev_support = 1 # spliced_intron 9513340-9513605 (orient:-) max_ev_support = 2 scaffold_1 - intron 9513340-9513605 asmbl_544 scaffold_1 - retained_intron 9513340-9513605 asmbl_546 // Exon Skipping and Retention # skipped_exon 9516100-9516733 (orient:-) max_ev_support = 1 # retained_exon 9516391-9516577 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 9516391-9516419,9516511-9516577 asmbl_547 scaffold_1 - intron_skips_exon 9516100-9516733 asmbl_550 // Retained and Spliced Intron # retained_intron 9515894-9516029 (orient:-) max_ev_support = 2 # spliced_intron 9515894-9516029 (orient:-) max_ev_support = 2 scaffold_1 - intron 9515894-9516029 asmbl_547,asmbl_549,asmbl_550 scaffold_1 - retained_intron 9515894-9516029 asmbl_548 // Retained and Spliced Intron # retained_intron 9516100-9516390 (orient:-) max_ev_support = 2 # spliced_intron 9516100-9516390 (orient:-) max_ev_support = 2 scaffold_1 - intron 9516100-9516390 asmbl_547 scaffold_1 - retained_intron 9516100-9516390 asmbl_548,asmbl_549 // Retained and Spliced Intron # retained_intron 9897278-9897370 (orient:-) max_ev_support = 1 # spliced_intron 9897278-9897370 (orient:-) max_ev_support = 2 scaffold_1 - intron 9897278-9897370 asmbl_569,asmbl_572 scaffold_1 - retained_intron 9897278-9897370 asmbl_571 // Exon Skipping and Retention # skipped_exon 10414454-10415687 (orient:-) max_ev_support = 2 # retained_exon 10414945-10415039 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 10414945-10415039 asmbl_592 scaffold_1 - intron_skips_exon 10414454-10415687 asmbl_593 // Retained and Spliced Intron # retained_intron 10414454-10414944 (orient:-) max_ev_support = 2 # spliced_intron 10414454-10414944 (orient:-) max_ev_support = 2 scaffold_1 - intron 10414454-10414944 asmbl_592 scaffold_1 - retained_intron 10414454-10414944 asmbl_594 // Retained and Spliced Intron # retained_intron 10414454-10414950 (orient:-) max_ev_support = 2 # spliced_intron 10414454-10414950 (orient:-) max_ev_support = 1 scaffold_1 - intron 10414454-10414950 asmbl_596 scaffold_1 - retained_intron 10414454-10414950 asmbl_594 // Retained and Spliced Intron # retained_intron 10414454-10414991 (orient:-) max_ev_support = 2 # spliced_intron 10414454-10414991 (orient:-) max_ev_support = 1 scaffold_1 - intron 10414454-10414991 asmbl_595 scaffold_1 - retained_intron 10414454-10414991 asmbl_594 // Retained and Spliced Intron # retained_intron 10460558-10460718 (orient:-) max_ev_support = 2 # spliced_intron 10460558-10460718 (orient:-) max_ev_support = 2 scaffold_1 - intron 10460558-10460718 asmbl_601 scaffold_1 - retained_intron 10460558-10460718 asmbl_600 // Exon Skipping and Retention # skipped_exon 10690372-10690977 (orient:-) max_ev_support = 2 # retained_exon 10690545-10690595 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 10690545-10690595 asmbl_607 scaffold_1 - intron_skips_exon 10690372-10690977 asmbl_606 // Retained and Spliced Intron # retained_intron 10763493-10763516 (orient:-) max_ev_support = 3 # spliced_intron 10763493-10763516 (orient:-) max_ev_support = 1 scaffold_1 - intron 10763493-10763516 asmbl_609 scaffold_1 - retained_intron 10763493-10763516 asmbl_608 // Exon Skipping and Retention # skipped_exon 11446591-11447975 (orient:-) max_ev_support = 1 # retained_exon 11446791-11447131 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 11446791-11446902,11447013-11447131 asmbl_624 scaffold_1 - intron_skips_exon 11446591-11447975 asmbl_625 // Retained and Spliced Intron # retained_intron 11568439-11568517 (orient:-) max_ev_support = 1 # spliced_intron 11568439-11568517 (orient:-) max_ev_support = 2 scaffold_1 - intron 11568439-11568517 asmbl_641,asmbl_642,asmbl_644,asmbl_645,asmbl_647 scaffold_1 - retained_intron 11568439-11568517 asmbl_646 // Exon Skipping and Retention # skipped_exon 11618948-11621286 (orient:-) max_ev_support = 2 # retained_exon 11620012-11620143 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 11620012-11620143 asmbl_652 scaffold_1 - intron_skips_exon 11618948-11621286 asmbl_653 // Retained and Spliced Intron # retained_intron 11626963-11627419 (orient:-) max_ev_support = 1 # spliced_intron 11626963-11627419 (orient:-) max_ev_support = 2 scaffold_1 - intron 11626963-11627419 asmbl_655,asmbl_656 scaffold_1 - retained_intron 11626963-11627419 asmbl_657,asmbl_658 // Retained and Spliced Intron # retained_intron 11626819-11626939 (orient:-) max_ev_support = 1 # spliced_intron 11626819-11626939 (orient:-) max_ev_support = 2 scaffold_1 - intron 11626819-11626939 asmbl_655,asmbl_656,asmbl_657 scaffold_1 - retained_intron 11626819-11626939 asmbl_658 // Retained and Spliced Intron # retained_intron 11800832-11801098 (orient:-) max_ev_support = 1 # spliced_intron 11800832-11801098 (orient:-) max_ev_support = 1 scaffold_1 - intron 11800832-11801098 asmbl_680 scaffold_1 - retained_intron 11800832-11801098 asmbl_677 // Retained and Spliced Intron # retained_intron 12333296-12334265 (orient:-) max_ev_support = 4 # spliced_intron 12333296-12334265 (orient:-) max_ev_support = 1 scaffold_1 - intron 12333296-12334265 asmbl_723 scaffold_1 - retained_intron 12333296-12334265 asmbl_710 // Retained and Spliced Intron # retained_intron 12334369-12334524 (orient:-) max_ev_support = 2 # spliced_intron 12334369-12334524 (orient:-) max_ev_support = 1 scaffold_1 - intron 12334369-12334524 asmbl_722 scaffold_1 - retained_intron 12334369-12334524 asmbl_710,asmbl_711,asmbl_718,asmbl_721 // Retained and Spliced Intron # retained_intron 12334369-12334829 (orient:-) max_ev_support = 2 # spliced_intron 12334369-12334829 (orient:-) max_ev_support = 1 scaffold_1 - intron 12334369-12334829 asmbl_715,asmbl_719,asmbl_720,asmbl_723 scaffold_1 - retained_intron 12334369-12334829 asmbl_710,asmbl_711,asmbl_718,asmbl_721 // Retained and Spliced Intron # retained_intron 12338031-12338206 (orient:-) max_ev_support = 1 # spliced_intron 12338031-12338206 (orient:-) max_ev_support = 1 scaffold_1 - intron 12338031-12338206 asmbl_712,asmbl_719 scaffold_1 - retained_intron 12338031-12338206 asmbl_711,asmbl_715,asmbl_716,asmbl_718 // Retained and Spliced Intron # retained_intron 12338031-12338333 (orient:-) max_ev_support = 1 # spliced_intron 12338031-12338333 (orient:-) max_ev_support = 2 scaffold_1 - intron 12338031-12338333 asmbl_710,asmbl_713,asmbl_714,asmbl_717,asmbl_720,asmbl_721,asmbl_722,asmbl_723 scaffold_1 - retained_intron 12338031-12338333 asmbl_711,asmbl_715,asmbl_716,asmbl_718 // Retained and Spliced Intron # retained_intron 12336858-12337333 (orient:-) max_ev_support = 1 # spliced_intron 12336858-12337333 (orient:-) max_ev_support = 2 scaffold_1 - intron 12336858-12337333 asmbl_710,asmbl_711,asmbl_713,asmbl_714,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723 scaffold_1 - retained_intron 12336858-12337333 asmbl_712 // Retained and Spliced Intron # retained_intron 12335190-12335281 (orient:-) max_ev_support = 1 # spliced_intron 12335190-12335281 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335190-12335281 asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723 scaffold_1 - retained_intron 12335190-12335281 asmbl_713,asmbl_714 // Retained and Spliced Intron # retained_intron 12335370-12335520 (orient:-) max_ev_support = 1 # spliced_intron 12335370-12335520 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335370-12335520 asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_719,asmbl_720,asmbl_721,asmbl_722,asmbl_723 scaffold_1 - retained_intron 12335370-12335520 asmbl_713,asmbl_714 // Retained and Spliced Intron # retained_intron 12335617-12335989 (orient:-) max_ev_support = 1 # spliced_intron 12335617-12335989 (orient:-) max_ev_support = 2 scaffold_1 - intron 12335617-12335989 asmbl_710,asmbl_711,asmbl_715,asmbl_716,asmbl_717,asmbl_718,asmbl_721,asmbl_722,asmbl_723 scaffold_1 - retained_intron 12335617-12335989 asmbl_713,asmbl_714,asmbl_719,asmbl_720 // Exon Skipping and Retention # skipped_exon 12334369-12335043 (orient:-) max_ev_support = 1 # retained_exon 12334830-12334912 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12334830-12334912 asmbl_715,asmbl_719,asmbl_720,asmbl_723 scaffold_1 - intron_skips_exon 12334369-12335043 asmbl_716,asmbl_717 // Retained and Spliced Intron # retained_intron 12334369-12335043 (orient:-) max_ev_support = 1 # spliced_intron 12334369-12335043 (orient:-) max_ev_support = 1 scaffold_1 - intron 12334369-12335043 asmbl_716,asmbl_717 scaffold_1 - retained_intron 12334369-12335043 asmbl_718,asmbl_721 // Retained and Spliced Intron # retained_intron 12334913-12335043 (orient:-) max_ev_support = 1 # spliced_intron 12334913-12335043 (orient:-) max_ev_support = 2 scaffold_1 - intron 12334913-12335043 asmbl_710,asmbl_711,asmbl_715,asmbl_719,asmbl_720,asmbl_723 scaffold_1 - retained_intron 12334913-12335043 asmbl_718,asmbl_721,asmbl_722 // Exon Skipping and Retention # skipped_exon 12462400-12463266 (orient:-) max_ev_support = 1 # retained_exon 12462825-12462908 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12462825-12462908 asmbl_725,asmbl_726 scaffold_1 - intron_skips_exon 12462400-12463266 asmbl_727,asmbl_728 // Exon Skipping and Retention # skipped_exon 12466110-12468409 (orient:-) max_ev_support = 1 # retained_exon 12466933-12467942 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12466933-12467016,12467382-12467465,12467859-12467942 asmbl_725 scaffold_1 - intron_skips_exon 12466110-12468409 asmbl_726,asmbl_727,asmbl_728 // Exon Skipping and Retention # skipped_exon 12463351-12464743 (orient:-) max_ev_support = 1 # retained_exon 12464320-12464403 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12464320-12464403 asmbl_726 scaffold_1 - intron_skips_exon 12463351-12464743 asmbl_725,asmbl_727 // Exon Skipping and Retention # skipped_exon 12463351-12464319 (orient:-) max_ev_support = 1 # retained_exon 12463815-12463898 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12463815-12463898 asmbl_728 scaffold_1 - intron_skips_exon 12463351-12464319 asmbl_726 // Exon Skipping and Retention # skipped_exon 12463351-12464743 (orient:-) max_ev_support = 1 # retained_exon 12463815-12464403 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12463815-12463898,12464320-12464403 asmbl_728 scaffold_1 - intron_skips_exon 12463351-12464743 asmbl_725,asmbl_727 // Exon Skipping and Retention # skipped_exon 12545033-12545421 (orient:-) max_ev_support = 2 # retained_exon 12545144-12545270 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 12545144-12545270 asmbl_737 scaffold_1 - intron_skips_exon 12545033-12545421 asmbl_736,asmbl_738 // Retained and Spliced Intron # retained_intron 12689792-12689998 (orient:-) max_ev_support = 5 # spliced_intron 12689792-12689998 (orient:-) max_ev_support = 3 scaffold_1 - intron 12689792-12689998 asmbl_752,asmbl_754 scaffold_1 - retained_intron 12689792-12689998 asmbl_751 // Retained and Spliced Intron # retained_intron 12690151-12690339 (orient:-) max_ev_support = 3 # spliced_intron 12690151-12690339 (orient:-) max_ev_support = 3 scaffold_1 - intron 12690151-12690339 asmbl_752 scaffold_1 - retained_intron 12690151-12690339 asmbl_751,asmbl_754 // Retained and Spliced Intron # retained_intron 12745169-12745369 (orient:-) max_ev_support = 2 # spliced_intron 12745169-12745369 (orient:-) max_ev_support = 2 scaffold_1 - intron 12745169-12745369 asmbl_757,asmbl_761 scaffold_1 - retained_intron 12745169-12745369 asmbl_756 // Retained and Spliced Intron # retained_intron 12745383-12745532 (orient:-) max_ev_support = 2 # spliced_intron 12745383-12745532 (orient:-) max_ev_support = 2 scaffold_1 - intron 12745383-12745532 asmbl_757 scaffold_1 - retained_intron 12745383-12745532 asmbl_756,asmbl_761 // Exon Skipping and Retention # skipped_exon 12746690-12748390 (orient:-) max_ev_support = 2 # retained_exon 12747184-12747222 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 12747184-12747222 asmbl_759 scaffold_1 - intron_skips_exon 12746690-12748390 asmbl_758,asmbl_760 // Retained and Spliced Intron # retained_intron 12788561-12788665 (orient:-) max_ev_support = 2 # spliced_intron 12788561-12788665 (orient:-) max_ev_support = 2 scaffold_1 - intron 12788561-12788665 asmbl_770,asmbl_771,asmbl_772 scaffold_1 - retained_intron 12788561-12788665 asmbl_769 // Retained and Spliced Intron # retained_intron 12794976-12795080 (orient:-) max_ev_support = 1 # spliced_intron 12794976-12795080 (orient:-) max_ev_support = 2 scaffold_1 - intron 12794976-12795080 asmbl_774 scaffold_1 - retained_intron 12794976-12795080 asmbl_775 // Retained and Spliced Intron # retained_intron 12953093-12953198 (orient:-) max_ev_support = 2 # spliced_intron 12953093-12953198 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953093-12953198 asmbl_790 scaffold_1 - retained_intron 12953093-12953198 asmbl_789,asmbl_791 // Retained and Spliced Intron # retained_intron 12953678-12953756 (orient:-) max_ev_support = 2 # spliced_intron 12953678-12953756 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953678-12953756 asmbl_789 scaffold_1 - retained_intron 12953678-12953756 asmbl_790,asmbl_791 // Retained and Spliced Intron # retained_intron 12953870-12953998 (orient:-) max_ev_support = 2 # spliced_intron 12953870-12953998 (orient:-) max_ev_support = 2 scaffold_1 - intron 12953870-12953998 asmbl_789 scaffold_1 - retained_intron 12953870-12953998 asmbl_790,asmbl_791 // Retained and Spliced Intron # retained_intron 13059558-13059577 (orient:-) max_ev_support = 2 # spliced_intron 13059558-13059577 (orient:-) max_ev_support = 1 scaffold_1 - intron 13059558-13059577 asmbl_795 scaffold_1 - retained_intron 13059558-13059577 asmbl_794 // Retained and Spliced Intron # retained_intron 13100329-13100568 (orient:-) max_ev_support = 2 # spliced_intron 13100329-13100568 (orient:-) max_ev_support = 1 scaffold_1 - intron 13100329-13100568 asmbl_800 scaffold_1 - retained_intron 13100329-13100568 asmbl_799 // Exon Skipping and Retention # skipped_exon 13098218-13100568 (orient:-) max_ev_support = 2 # retained_exon 13100303-13100328 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 13100303-13100328 asmbl_800 scaffold_1 - intron_skips_exon 13098218-13100568 asmbl_798 // Retained and Spliced Intron # retained_intron 13130586-13130726 (orient:-) max_ev_support = 1 # spliced_intron 13130586-13130726 (orient:-) max_ev_support = 2 scaffold_1 - intron 13130586-13130726 asmbl_803 scaffold_1 - retained_intron 13130586-13130726 asmbl_805 // Retained and Spliced Intron # retained_intron 13433544-13433580 (orient:-) max_ev_support = 2 # spliced_intron 13433544-13433580 (orient:-) max_ev_support = 1 scaffold_1 - intron 13433544-13433580 asmbl_809 scaffold_1 - retained_intron 13433544-13433580 asmbl_808 // Retained and Spliced Intron # retained_intron 13537791-13537907 (orient:-) max_ev_support = 2 # spliced_intron 13537791-13537907 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537791-13537907 asmbl_825,asmbl_826,asmbl_828 scaffold_1 - retained_intron 13537791-13537907 asmbl_827 // Retained and Spliced Intron # retained_intron 13538442-13538687 (orient:-) max_ev_support = 1 # spliced_intron 13538442-13538687 (orient:-) max_ev_support = 3 scaffold_1 - intron 13538442-13538687 asmbl_825,asmbl_826 scaffold_1 - retained_intron 13538442-13538687 asmbl_828 // Retained and Spliced Intron # retained_intron 13537305-13537508 (orient:-) max_ev_support = 1 # spliced_intron 13537305-13537508 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537305-13537508 asmbl_825,asmbl_826,asmbl_828 scaffold_1 - retained_intron 13537305-13537508 asmbl_829,asmbl_830 // Retained and Spliced Intron # retained_intron 13537007-13537217 (orient:-) max_ev_support = 1 # spliced_intron 13537007-13537217 (orient:-) max_ev_support = 3 scaffold_1 - intron 13537007-13537217 asmbl_825,asmbl_826,asmbl_828,asmbl_829 scaffold_1 - retained_intron 13537007-13537217 asmbl_830 // Exon Skipping and Retention # skipped_exon 13565696-13566054 (orient:-) max_ev_support = 1 # retained_exon 13565843-13565951 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 13565843-13565951 asmbl_837 scaffold_1 - intron_skips_exon 13565696-13566054 asmbl_838 // Exon Skipping and Retention # skipped_exon 13883297-13885119 (orient:-) max_ev_support = 1 # retained_exon 13884593-13884633 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 13884593-13884633 asmbl_858 scaffold_1 - intron_skips_exon 13883297-13885119 asmbl_857 // Exon Skipping and Retention # skipped_exon 13883303-13885119 (orient:-) max_ev_support = 2 # retained_exon 13884593-13884633 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 13884593-13884633 asmbl_858 scaffold_1 - intron_skips_exon 13883303-13885119 asmbl_860 // Exon Skipping and Retention # skipped_exon 13883303-13885119 (orient:-) max_ev_support = 2 # retained_exon 13884593-13884636 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 13884593-13884636 asmbl_863 scaffold_1 - intron_skips_exon 13883303-13885119 asmbl_860 // Retained and Spliced Intron # retained_intron 14189225-14189671 (orient:-) max_ev_support = 2 # spliced_intron 14189225-14189671 (orient:-) max_ev_support = 2 scaffold_1 - intron 14189225-14189671 asmbl_872,asmbl_877,asmbl_878,asmbl_879,asmbl_880 scaffold_1 - retained_intron 14189225-14189671 asmbl_871 // Retained and Spliced Intron # retained_intron 14189912-14190481 (orient:-) max_ev_support = 1 # spliced_intron 14189912-14190481 (orient:-) max_ev_support = 2 scaffold_1 - intron 14189912-14190481 asmbl_872,asmbl_877,asmbl_879,asmbl_880 scaffold_1 - retained_intron 14189912-14190481 asmbl_878 // Retained and Spliced Intron # retained_intron 14190668-14191031 (orient:-) max_ev_support = 1 # spliced_intron 14190668-14191031 (orient:-) max_ev_support = 2 scaffold_1 - intron 14190668-14191031 asmbl_872,asmbl_877,asmbl_878,asmbl_880 scaffold_1 - retained_intron 14190668-14191031 asmbl_879 // Retained and Spliced Intron # retained_intron 14191116-14191205 (orient:-) max_ev_support = 1 # spliced_intron 14191116-14191205 (orient:-) max_ev_support = 2 scaffold_1 - intron 14191116-14191205 asmbl_872,asmbl_877,asmbl_878,asmbl_880 scaffold_1 - retained_intron 14191116-14191205 asmbl_879 // Retained and Spliced Intron # retained_intron 14251914-14252304 (orient:-) max_ev_support = 2 # spliced_intron 14251914-14252304 (orient:-) max_ev_support = 1 scaffold_1 - intron 14251914-14252304 asmbl_883 scaffold_1 - retained_intron 14251914-14252304 asmbl_882 // Retained and Spliced Intron # retained_intron 14333858-14334027 (orient:-) max_ev_support = 2 # spliced_intron 14333858-14334027 (orient:-) max_ev_support = 2 scaffold_1 - intron 14333858-14334027 asmbl_894 scaffold_1 - retained_intron 14333858-14334027 asmbl_895,asmbl_896 // Retained and Spliced Intron # retained_intron 14334145-14334239 (orient:-) max_ev_support = 2 # spliced_intron 14334145-14334239 (orient:-) max_ev_support = 2 scaffold_1 - intron 14334145-14334239 asmbl_894,asmbl_896 scaffold_1 - retained_intron 14334145-14334239 asmbl_895 // Retained and Spliced Intron # retained_intron 14349751-14349879 (orient:-) max_ev_support = 1 # spliced_intron 14349751-14349879 (orient:-) max_ev_support = 2 scaffold_1 - intron 14349751-14349879 asmbl_899,asmbl_900,asmbl_901,asmbl_903 scaffold_1 - retained_intron 14349751-14349879 asmbl_902 // Retained and Spliced Intron # retained_intron 14350452-14350634 (orient:-) max_ev_support = 1 # spliced_intron 14350452-14350634 (orient:-) max_ev_support = 2 scaffold_1 - intron 14350452-14350634 asmbl_899,asmbl_900,asmbl_902 scaffold_1 - retained_intron 14350452-14350634 asmbl_903 // Retained and Spliced Intron # retained_intron 14354771-14354860 (orient:-) max_ev_support = 2 # spliced_intron 14354771-14354860 (orient:-) max_ev_support = 1 scaffold_1 - intron 14354771-14354860 asmbl_905 scaffold_1 - retained_intron 14354771-14354860 asmbl_904,asmbl_906,asmbl_907,asmbl_908 // Retained and Spliced Intron # retained_intron 14354987-14355171 (orient:-) max_ev_support = 2 # spliced_intron 14354987-14355171 (orient:-) max_ev_support = 1 scaffold_1 - intron 14354987-14355171 asmbl_905 scaffold_1 - retained_intron 14354987-14355171 asmbl_904,asmbl_906,asmbl_907,asmbl_908 // Retained and Spliced Intron # retained_intron 14355333-14355698 (orient:-) max_ev_support = 2 # spliced_intron 14355333-14355698 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355333-14355698 asmbl_905,asmbl_906,asmbl_907,asmbl_908 scaffold_1 - retained_intron 14355333-14355698 asmbl_904 // Retained and Spliced Intron # retained_intron 14355835-14355968 (orient:-) max_ev_support = 1 # spliced_intron 14355835-14355968 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355835-14355968 asmbl_906 scaffold_1 - retained_intron 14355835-14355968 asmbl_907 // Retained and Spliced Intron # retained_intron 14355835-14355988 (orient:-) max_ev_support = 1 # spliced_intron 14355835-14355988 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355835-14355988 asmbl_908 scaffold_1 - retained_intron 14355835-14355988 asmbl_907 // Retained and Spliced Intron # retained_intron 14355864-14355968 (orient:-) max_ev_support = 1 # spliced_intron 14355864-14355968 (orient:-) max_ev_support = 1 scaffold_1 - intron 14355864-14355968 asmbl_905 scaffold_1 - retained_intron 14355864-14355968 asmbl_907 // Exon Skipping and Retention # skipped_exon 14363017-14365198 (orient:-) max_ev_support = 1 # retained_exon 14364086-14364252 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 14364086-14364252 asmbl_909 scaffold_1 - intron_skips_exon 14363017-14365198 asmbl_915 // Retained and Spliced Intron # retained_intron 14359766-14359977 (orient:-) max_ev_support = 2 # spliced_intron 14359766-14359977 (orient:-) max_ev_support = 2 scaffold_1 - intron 14359766-14359977 asmbl_909,asmbl_911,asmbl_913,asmbl_915 scaffold_1 - retained_intron 14359766-14359977 asmbl_910,asmbl_914 // Retained and Spliced Intron # retained_intron 14360102-14360228 (orient:-) max_ev_support = 2 # spliced_intron 14360102-14360228 (orient:-) max_ev_support = 2 scaffold_1 - intron 14360102-14360228 asmbl_909,asmbl_911,asmbl_913,asmbl_915 scaffold_1 - retained_intron 14360102-14360228 asmbl_910,asmbl_914 // Retained and Spliced Intron # retained_intron 14411093-14411191 (orient:-) max_ev_support = 1 # spliced_intron 14411093-14411191 (orient:-) max_ev_support = 2 scaffold_1 - intron 14411093-14411191 asmbl_918 scaffold_1 - retained_intron 14411093-14411191 asmbl_919 // Retained and Spliced Intron # retained_intron 14426870-14427019 (orient:-) max_ev_support = 2 # spliced_intron 14426870-14427019 (orient:-) max_ev_support = 2 scaffold_1 - intron 14426870-14427019 asmbl_928,asmbl_929,asmbl_930,asmbl_931 scaffold_1 - retained_intron 14426870-14427019 asmbl_927 // Retained and Spliced Intron # retained_intron 14427728-14428466 (orient:-) max_ev_support = 2 # spliced_intron 14427728-14428466 (orient:-) max_ev_support = 2 scaffold_1 - intron 14427728-14428466 asmbl_930 scaffold_1 - retained_intron 14427728-14428466 asmbl_928 // Retained and Spliced Intron # retained_intron 14427728-14428504 (orient:-) max_ev_support = 2 # spliced_intron 14427728-14428504 (orient:-) max_ev_support = 2 scaffold_1 - intron 14427728-14428504 asmbl_929 scaffold_1 - retained_intron 14427728-14428504 asmbl_928 // Retained and Spliced Intron # retained_intron 14521611-14522141 (orient:-) max_ev_support = 2 # spliced_intron 14521611-14522141 (orient:-) max_ev_support = 2 scaffold_1 - intron 14521611-14522141 asmbl_935,asmbl_937 scaffold_1 - retained_intron 14521611-14522141 asmbl_934,asmbl_936 // Retained and Spliced Intron # retained_intron 14522266-14522424 (orient:-) max_ev_support = 2 # spliced_intron 14522266-14522424 (orient:-) max_ev_support = 2 scaffold_1 - intron 14522266-14522424 asmbl_935,asmbl_936 scaffold_1 - retained_intron 14522266-14522424 asmbl_934,asmbl_937 // Exon Skipping and Retention # skipped_exon 15306118-15306585 (orient:-) max_ev_support = 1 # retained_exon 15306266-15306424 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 15306266-15306424 asmbl_959 scaffold_1 - intron_skips_exon 15306118-15306585 asmbl_960 // Retained and Spliced Intron # retained_intron 16095601-16095685 (orient:-) max_ev_support = 2 # spliced_intron 16095601-16095685 (orient:-) max_ev_support = 1 scaffold_1 - intron 16095601-16095685 asmbl_978 scaffold_1 - retained_intron 16095601-16095685 asmbl_976 // Retained and Spliced Intron # retained_intron 16095601-16095749 (orient:-) max_ev_support = 2 # spliced_intron 16095601-16095749 (orient:-) max_ev_support = 2 scaffold_1 - intron 16095601-16095749 asmbl_977 scaffold_1 - retained_intron 16095601-16095749 asmbl_976 // Exon Skipping and Retention # skipped_exon 16096299-16097022 (orient:-) max_ev_support = 2 # retained_exon 16096473-16096565 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 16096473-16096565 asmbl_979 scaffold_1 - intron_skips_exon 16096299-16097022 asmbl_976,asmbl_977,asmbl_978 // Retained and Spliced Intron # retained_intron 16478498-16478746 (orient:-) max_ev_support = 1 # spliced_intron 16478498-16478746 (orient:-) max_ev_support = 2 scaffold_1 - intron 16478498-16478746 asmbl_992,asmbl_993 scaffold_1 - retained_intron 16478498-16478746 asmbl_997 // Retained and Spliced Intron # retained_intron 16478811-16478993 (orient:-) max_ev_support = 1 # spliced_intron 16478811-16478993 (orient:-) max_ev_support = 2 scaffold_1 - intron 16478811-16478993 asmbl_992,asmbl_993 scaffold_1 - retained_intron 16478811-16478993 asmbl_997 // Exon Skipping and Retention # skipped_exon 16718940-16719480 (orient:-) max_ev_support = 1 # retained_exon 16719150-16719318 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 16719150-16719182,16719295-16719318 asmbl_1009,asmbl_1011,asmbl_1012,asmbl_1014 scaffold_1 - intron_skips_exon 16718940-16719480 asmbl_1010 // Retained and Spliced Intron # retained_intron 16751465-16751493 (orient:-) max_ev_support = 2 # spliced_intron 16751465-16751493 (orient:-) max_ev_support = 1 scaffold_1 - intron 16751465-16751493 asmbl_1017 scaffold_1 - retained_intron 16751465-16751493 asmbl_1016 // Retained and Spliced Intron # retained_intron 16923881-16923994 (orient:-) max_ev_support = 1 # spliced_intron 16923881-16923994 (orient:-) max_ev_support = 1 scaffold_1 - intron 16923881-16923994 asmbl_1021 scaffold_1 - retained_intron 16923881-16923994 asmbl_1022 // Retained and Spliced Intron # retained_intron 17975385-17975557 (orient:-) max_ev_support = 2 # spliced_intron 17975385-17975557 (orient:-) max_ev_support = 1 scaffold_1 - intron 17975385-17975557 asmbl_1072 scaffold_1 - retained_intron 17975385-17975557 asmbl_1071 // Retained and Spliced Intron # retained_intron 18033265-18033608 (orient:-) max_ev_support = 2 # spliced_intron 18033265-18033608 (orient:-) max_ev_support = 1 scaffold_1 - intron 18033265-18033608 asmbl_1079,asmbl_1080 scaffold_1 - retained_intron 18033265-18033608 asmbl_1077,asmbl_1078 // Retained and Spliced Intron # retained_intron 18033269-18033608 (orient:-) max_ev_support = 2 # spliced_intron 18033269-18033608 (orient:-) max_ev_support = 3 scaffold_1 - intron 18033269-18033608 asmbl_1076 scaffold_1 - retained_intron 18033269-18033608 asmbl_1077,asmbl_1078 // Exon Skipping and Retention # skipped_exon 18086651-18087485 (orient:-) max_ev_support = 1 # retained_exon 18087007-18087072 (orient:-) max_ev_support = 3 scaffold_1 - retained_exons 18087007-18087072 asmbl_1086 scaffold_1 - intron_skips_exon 18086651-18087485 asmbl_1087 // Retained and Spliced Intron # retained_intron 18279633-18279766 (orient:-) max_ev_support = 1 # spliced_intron 18279633-18279766 (orient:-) max_ev_support = 2 scaffold_1 - intron 18279633-18279766 asmbl_1095 scaffold_1 - retained_intron 18279633-18279766 asmbl_1097 // Retained and Spliced Intron # retained_intron 18487756-18487955 (orient:-) max_ev_support = 2 # spliced_intron 18487756-18487955 (orient:-) max_ev_support = 2 scaffold_1 - intron 18487756-18487955 asmbl_1106,asmbl_1107,asmbl_1108,asmbl_1110,asmbl_1111,asmbl_1113 scaffold_1 - retained_intron 18487756-18487955 asmbl_1109 // Exon Skipping and Retention # skipped_exon 18485288-18486788 (orient:-) max_ev_support = 2 # retained_exon 18485992-18486046 (orient:-) max_ev_support = 1 scaffold_1 - retained_exons 18485992-18486046 asmbl_1110 scaffold_1 - intron_skips_exon 18485288-18486788 asmbl_1106 // Retained and Spliced Intron # retained_intron 18485288-18485976 (orient:-) max_ev_support = 1 # spliced_intron 18485288-18485976 (orient:-) max_ev_support = 1 scaffold_1 - intron 18485288-18485976 asmbl_1111 scaffold_1 - retained_intron 18485288-18485976 asmbl_1112,asmbl_1113 // Retained and Spliced Intron # retained_intron 18485288-18485991 (orient:-) max_ev_support = 1 # spliced_intron 18485288-18485991 (orient:-) max_ev_support = 1 scaffold_1 - intron 18485288-18485991 asmbl_1110 scaffold_1 - retained_intron 18485288-18485991 asmbl_1112,asmbl_1113 // Exon Skipping and Retention # skipped_exon 18521817-18524432 (orient:-) max_ev_support = 2 # retained_exon 18524286-18524340 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 18524286-18524340 asmbl_1117 scaffold_1 - intron_skips_exon 18521817-18524432 asmbl_1116 // Retained and Spliced Intron # retained_intron 18784825-18784961 (orient:-) max_ev_support = 2 # spliced_intron 18784825-18784961 (orient:-) max_ev_support = 2 scaffold_1 - intron 18784825-18784961 asmbl_1126 scaffold_1 - retained_intron 18784825-18784961 asmbl_1127 // Exon Skipping and Retention # skipped_exon 19695030-19696372 (orient:-) max_ev_support = 1 # retained_exon 19695156-19695224 (orient:-) max_ev_support = 2 scaffold_1 - retained_exons 19695156-19695224 asmbl_1150 scaffold_1 - intron_skips_exon 19695030-19696372 asmbl_1151,asmbl_1152 // Retained and Spliced Intron # retained_intron 20024322-20024343 (orient:-) max_ev_support = 3 # spliced_intron 20024322-20024343 (orient:-) max_ev_support = 1 scaffold_1 - intron 20024322-20024343 asmbl_1161 scaffold_1 - retained_intron 20024322-20024343 asmbl_1160 // Retained and Spliced Intron # retained_intron 20134536-20134559 (orient:-) max_ev_support = 1 # spliced_intron 20134536-20134559 (orient:-) max_ev_support = 1 scaffold_1 - intron 20134536-20134559 asmbl_1170 scaffold_1 - retained_intron 20134536-20134559 asmbl_1169 // Retained and Spliced Intron # retained_intron 20135302-20135349 (orient:-) max_ev_support = 1 # spliced_intron 20135302-20135349 (orient:-) max_ev_support = 1 scaffold_1 - intron 20135302-20135349 asmbl_1174 scaffold_1 - retained_intron 20135302-20135349 asmbl_1173 // Retained and Spliced Intron # retained_intron 20498696-20498844 (orient:-) max_ev_support = 2 # spliced_intron 20498696-20498844 (orient:-) max_ev_support = 1 scaffold_1 - intron 20498696-20498844 asmbl_1183 scaffold_1 - retained_intron 20498696-20498844 asmbl_1182 // Retained and Spliced Intron # retained_intron 20506233-20506257 (orient:-) max_ev_support = 4 # spliced_intron 20506233-20506257 (orient:-) max_ev_support = 1 scaffold_1 - intron 20506233-20506257 asmbl_1185 scaffold_1 - retained_intron 20506233-20506257 asmbl_1184 // Retained and Spliced Intron # retained_intron 20741340-20741546 (orient:-) max_ev_support = 1 # spliced_intron 20741340-20741546 (orient:-) max_ev_support = 2 scaffold_1 - intron 20741340-20741546 asmbl_1198 scaffold_1 - retained_intron 20741340-20741546 asmbl_1199,asmbl_1200 // Retained and Spliced Intron # retained_intron 20742516-20742758 (orient:-) max_ev_support = 1 # spliced_intron 20742516-20742758 (orient:-) max_ev_support = 1 scaffold_1 - intron 20742516-20742758 asmbl_1199 scaffold_1 - retained_intron 20742516-20742758 asmbl_1200 // Retained and Spliced Intron # retained_intron 21665391-21665422 (orient:-) max_ev_support = 3 # spliced_intron 21665391-21665422 (orient:-) max_ev_support = 2 scaffold_1 - intron 21665391-21665422 asmbl_1213 scaffold_1 - retained_intron 21665391-21665422 asmbl_1212 // Retained and Spliced Intron # retained_intron 22324113-22324192 (orient:-) max_ev_support = 2 # spliced_intron 22324113-22324192 (orient:-) max_ev_support = 3 scaffold_1 - intron 22324113-22324192 asmbl_1233 scaffold_1 - retained_intron 22324113-22324192 asmbl_1234 // Retained and Spliced Intron # retained_intron 169539-169855 (orient:+) max_ev_support = 2 # spliced_intron 169539-169855 (orient:+) max_ev_support = 3 scaffold_1 + intron 169539-169855 asmbl_1396 scaffold_1 + retained_intron 169539-169855 asmbl_1399,asmbl_1400 // Retained and Spliced Intron # retained_intron 170665-170776 (orient:+) max_ev_support = 2 # spliced_intron 170665-170776 (orient:+) max_ev_support = 3 scaffold_1 + intron 170665-170776 asmbl_1396 scaffold_1 + retained_intron 170665-170776 asmbl_1401 // Retained and Spliced Intron # retained_intron 849802-849972 (orient:+) max_ev_support = 3 # spliced_intron 849802-849972 (orient:+) max_ev_support = 3 scaffold_1 + intron 849802-849972 asmbl_1416 scaffold_1 + retained_intron 849802-849972 asmbl_1414,asmbl_1417 // Exon Skipping and Retention # skipped_exon 849299-849972 (orient:+) max_ev_support = 3 # retained_exon 849738-849801 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 849738-849801 asmbl_1416,asmbl_1418 scaffold_1 + intron_skips_exon 849299-849972 asmbl_1415 // Retained and Spliced Intron # retained_intron 849299-849737 (orient:+) max_ev_support = 2 # spliced_intron 849299-849737 (orient:+) max_ev_support = 3 scaffold_1 + intron 849299-849737 asmbl_1414,asmbl_1416,asmbl_1418 scaffold_1 + retained_intron 849299-849737 asmbl_1417 // Retained and Spliced Intron # retained_intron 849299-849972 (orient:+) max_ev_support = 2 # spliced_intron 849299-849972 (orient:+) max_ev_support = 3 scaffold_1 + intron 849299-849972 asmbl_1415 scaffold_1 + retained_intron 849299-849972 asmbl_1417 // Exon Skipping and Retention # skipped_exon 849299-850633 (orient:+) max_ev_support = 1 # retained_exon 849738-849801 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 849738-849801 asmbl_1416,asmbl_1418 scaffold_1 + intron_skips_exon 849299-850633 asmbl_1419 // Retained and Spliced Intron # retained_intron 854652-854820 (orient:+) max_ev_support = 3 # spliced_intron 854652-854820 (orient:+) max_ev_support = 1 scaffold_1 + intron 854652-854820 asmbl_1425,asmbl_1426,asmbl_1427 scaffold_1 + retained_intron 854652-854820 asmbl_1420,asmbl_1423,asmbl_1424 // Retained and Spliced Intron # retained_intron 854276-854519 (orient:+) max_ev_support = 1 # spliced_intron 854276-854519 (orient:+) max_ev_support = 1 scaffold_1 + intron 854276-854519 asmbl_1420,asmbl_1424,asmbl_1425,asmbl_1427 scaffold_1 + retained_intron 854276-854519 asmbl_1423,asmbl_1426 // Retained and Spliced Intron # retained_intron 854980-855087 (orient:+) max_ev_support = 1 # spliced_intron 854980-855087 (orient:+) max_ev_support = 1 scaffold_1 + intron 854980-855087 asmbl_1424,asmbl_1425,asmbl_1426 scaffold_1 + retained_intron 854980-855087 asmbl_1423,asmbl_1427 // Retained and Spliced Intron # retained_intron 854980-855130 (orient:+) max_ev_support = 1 # spliced_intron 854980-855130 (orient:+) max_ev_support = 3 scaffold_1 + intron 854980-855130 asmbl_1420 scaffold_1 + retained_intron 854980-855130 asmbl_1423,asmbl_1427 // Retained and Spliced Intron # retained_intron 855214-855406 (orient:+) max_ev_support = 1 # spliced_intron 855214-855406 (orient:+) max_ev_support = 3 scaffold_1 + intron 855214-855406 asmbl_1420,asmbl_1424,asmbl_1425,asmbl_1426 scaffold_1 + retained_intron 855214-855406 asmbl_1423,asmbl_1427 // Retained and Spliced Intron # retained_intron 853703-853954 (orient:+) max_ev_support = 1 # spliced_intron 853703-853954 (orient:+) max_ev_support = 1 scaffold_1 + intron 853703-853954 asmbl_1427 scaffold_1 + retained_intron 853703-853954 asmbl_1426 // Retained and Spliced Intron # retained_intron 853703-854190 (orient:+) max_ev_support = 1 # spliced_intron 853703-854190 (orient:+) max_ev_support = 1 scaffold_1 + intron 853703-854190 asmbl_1420,asmbl_1423,asmbl_1424,asmbl_1425 scaffold_1 + retained_intron 853703-854190 asmbl_1426 // Retained and Spliced Intron # retained_intron 854040-854190 (orient:+) max_ev_support = 1 # spliced_intron 854040-854190 (orient:+) max_ev_support = 1 scaffold_1 + intron 854040-854190 asmbl_1427 scaffold_1 + retained_intron 854040-854190 asmbl_1426 // Exon Skipping and Retention # skipped_exon 853703-854190 (orient:+) max_ev_support = 1 # retained_exon 853955-854039 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 853955-854039 asmbl_1427 scaffold_1 + intron_skips_exon 853703-854190 asmbl_1420,asmbl_1423,asmbl_1424,asmbl_1425 // Retained and Spliced Intron # retained_intron 922856-922976 (orient:+) max_ev_support = 2 # spliced_intron 922856-922976 (orient:+) max_ev_support = 2 scaffold_1 + intron 922856-922976 asmbl_1440 scaffold_1 + retained_intron 922856-922976 asmbl_1439 // Retained and Spliced Intron # retained_intron 952977-953543 (orient:+) max_ev_support = 2 # spliced_intron 952977-953543 (orient:+) max_ev_support = 2 scaffold_1 + intron 952977-953543 asmbl_1442 scaffold_1 + retained_intron 952977-953543 asmbl_1441 // Retained and Spliced Intron # retained_intron 1041790-1043520 (orient:+) max_ev_support = 4 # spliced_intron 1041790-1043520 (orient:+) max_ev_support = 2 scaffold_1 + intron 1041790-1043520 asmbl_1449 scaffold_1 + retained_intron 1041790-1043520 asmbl_1448 // Retained and Spliced Intron # retained_intron 1042580-1042741 (orient:+) max_ev_support = 4 # spliced_intron 1042580-1042741 (orient:+) max_ev_support = 1 scaffold_1 + intron 1042580-1042741 asmbl_1450 scaffold_1 + retained_intron 1042580-1042741 asmbl_1448 // Retained and Spliced Intron # retained_intron 1349041-1349123 (orient:+) max_ev_support = 1 # spliced_intron 1349041-1349123 (orient:+) max_ev_support = 3 scaffold_1 + intron 1349041-1349123 asmbl_1473 scaffold_1 + retained_intron 1349041-1349123 asmbl_1474 // Retained and Spliced Intron # retained_intron 1533624-1533762 (orient:+) max_ev_support = 2 # spliced_intron 1533624-1533762 (orient:+) max_ev_support = 3 scaffold_1 + intron 1533624-1533762 asmbl_1482 scaffold_1 + retained_intron 1533624-1533762 asmbl_1483 // Exon Skipping and Retention # skipped_exon 1561810-1563955 (orient:+) max_ev_support = 2 # retained_exon 1562434-1562526 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 1562434-1562526 asmbl_1489 scaffold_1 + intron_skips_exon 1561810-1563955 asmbl_1488 // Retained and Spliced Intron # retained_intron 1565206-1565368 (orient:+) max_ev_support = 1 # spliced_intron 1565206-1565368 (orient:+) max_ev_support = 2 scaffold_1 + intron 1565206-1565368 asmbl_1488,asmbl_1489,asmbl_1491 scaffold_1 + retained_intron 1565206-1565368 asmbl_1490 // Retained and Spliced Intron # retained_intron 1608805-1609003 (orient:+) max_ev_support = 2 # spliced_intron 1608805-1609003 (orient:+) max_ev_support = 3 scaffold_1 + intron 1608805-1609003 asmbl_1494,asmbl_1498 scaffold_1 + retained_intron 1608805-1609003 asmbl_1496,asmbl_1497,asmbl_1500 // Retained and Spliced Intron # retained_intron 1909884-1910238 (orient:+) max_ev_support = 3 # spliced_intron 1909884-1910238 (orient:+) max_ev_support = 2 scaffold_1 + intron 1909884-1910238 asmbl_1514,asmbl_1515 scaffold_1 + retained_intron 1909884-1910238 asmbl_1513 // Retained and Spliced Intron # retained_intron 1992066-1992263 (orient:+) max_ev_support = 3 # spliced_intron 1992066-1992263 (orient:+) max_ev_support = 1 scaffold_1 + intron 1992066-1992263 asmbl_1522 scaffold_1 + retained_intron 1992066-1992263 asmbl_1520 // Retained and Spliced Intron # retained_intron 1993732-1994147 (orient:+) max_ev_support = 2 # spliced_intron 1993732-1994147 (orient:+) max_ev_support = 2 scaffold_1 + intron 1993732-1994147 asmbl_1520,asmbl_1521,asmbl_1522,asmbl_1524 scaffold_1 + retained_intron 1993732-1994147 asmbl_1523 // Retained and Spliced Intron # retained_intron 1994334-1994743 (orient:+) max_ev_support = 1 # spliced_intron 1994334-1994743 (orient:+) max_ev_support = 2 scaffold_1 + intron 1994334-1994743 asmbl_1520,asmbl_1521,asmbl_1522 scaffold_1 + retained_intron 1994334-1994743 asmbl_1524 // Retained and Spliced Intron # retained_intron 2131805-2132592 (orient:+) max_ev_support = 2 # spliced_intron 2131805-2132592 (orient:+) max_ev_support = 1 scaffold_1 + intron 2131805-2132592 asmbl_1532 scaffold_1 + retained_intron 2131805-2132592 asmbl_1529 // Retained and Spliced Intron # retained_intron 2796391-2796537 (orient:+) max_ev_support = 2 # spliced_intron 2796391-2796537 (orient:+) max_ev_support = 2 scaffold_1 + intron 2796391-2796537 asmbl_1553 scaffold_1 + retained_intron 2796391-2796537 asmbl_1552 // Exon Skipping and Retention # skipped_exon 3285767-3287424 (orient:+) max_ev_support = 1 # retained_exon 3287205-3287337 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 3287205-3287337 asmbl_1586 scaffold_1 + intron_skips_exon 3285767-3287424 asmbl_1589 // Exon Skipping and Retention # skipped_exon 3285767-3287204 (orient:+) max_ev_support = 2 # retained_exon 3286873-3286921 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 3286873-3286921 asmbl_1590 scaffold_1 + intron_skips_exon 3285767-3287204 asmbl_1586 // Exon Skipping and Retention # skipped_exon 3285767-3287307 (orient:+) max_ev_support = 1 # retained_exon 3286873-3286921 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 3286873-3286921 asmbl_1590 scaffold_1 + intron_skips_exon 3285767-3287307 asmbl_1588 // Exon Skipping and Retention # skipped_exon 3678408-3680406 (orient:+) max_ev_support = 1 # retained_exon 3679503-3679991 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 3679503-3679629,3679854-3679991 asmbl_1623,asmbl_1624 scaffold_1 + intron_skips_exon 3678408-3680406 asmbl_1626 // Retained and Spliced Intron # retained_intron 3681459-3682104 (orient:+) max_ev_support = 2 # spliced_intron 3681459-3682104 (orient:+) max_ev_support = 1 scaffold_1 + intron 3681459-3682104 asmbl_1626,asmbl_1627 scaffold_1 + retained_intron 3681459-3682104 asmbl_1623,asmbl_1624 // Retained and Spliced Intron # retained_intron 3679992-3680248 (orient:+) max_ev_support = 1 # spliced_intron 3679992-3680248 (orient:+) max_ev_support = 2 scaffold_1 + intron 3679992-3680248 asmbl_1623 scaffold_1 + retained_intron 3679992-3680248 asmbl_1625 // Exon Skipping and Retention # skipped_exon 4225778-4226335 (orient:+) max_ev_support = 2 # retained_exon 4226021-4226071 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 4226021-4226071 asmbl_1636 scaffold_1 + intron_skips_exon 4225778-4226335 asmbl_1637 // Retained and Spliced Intron # retained_intron 4226072-4226335 (orient:+) max_ev_support = 2 # spliced_intron 4226072-4226335 (orient:+) max_ev_support = 2 scaffold_1 + intron 4226072-4226335 asmbl_1636,asmbl_1640 scaffold_1 + retained_intron 4226072-4226335 asmbl_1639 // Retained and Spliced Intron # retained_intron 4225778-4226020 (orient:+) max_ev_support = 1 # spliced_intron 4225778-4226020 (orient:+) max_ev_support = 2 scaffold_1 + intron 4225778-4226020 asmbl_1636 scaffold_1 + retained_intron 4225778-4226020 asmbl_1640 // Exon Skipping and Retention # skipped_exon 4237758-4239798 (orient:+) max_ev_support = 2 # retained_exon 4239039-4239168 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 4239039-4239168 asmbl_1642,asmbl_1650 scaffold_1 + intron_skips_exon 4237758-4239798 asmbl_1643,asmbl_1648,asmbl_1653 // Exon Skipping and Retention # skipped_exon 4237758-4240318 (orient:+) max_ev_support = 2 # retained_exon 4239039-4239871 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 4239039-4239168,4239799-4239871 asmbl_1642,asmbl_1650 scaffold_1 + retained_exons 4239039-4239871 asmbl_1652,asmbl_1654 scaffold_1 + intron_skips_exon 4237758-4240318 asmbl_1645,asmbl_1649 // Retained and Spliced Intron # retained_intron 4239169-4239798 (orient:+) max_ev_support = 1 # spliced_intron 4239169-4239798 (orient:+) max_ev_support = 2 scaffold_1 + intron 4239169-4239798 asmbl_1642,asmbl_1650 scaffold_1 + retained_intron 4239169-4239798 asmbl_1652,asmbl_1654 // Retained and Spliced Intron # retained_intron 4587875-4587986 (orient:+) max_ev_support = 2 # spliced_intron 4587875-4587986 (orient:+) max_ev_support = 2 scaffold_1 + intron 4587875-4587986 asmbl_1672,asmbl_1674 scaffold_1 + retained_intron 4587875-4587986 asmbl_1673 // Retained and Spliced Intron # retained_intron 4602131-4602216 (orient:+) max_ev_support = 2 # spliced_intron 4602131-4602216 (orient:+) max_ev_support = 2 scaffold_1 + intron 4602131-4602216 asmbl_1676 scaffold_1 + retained_intron 4602131-4602216 asmbl_1677 // Retained and Spliced Intron # retained_intron 4619268-4619989 (orient:+) max_ev_support = 2 # spliced_intron 4619268-4619989 (orient:+) max_ev_support = 1 scaffold_1 + intron 4619268-4619989 asmbl_1683 scaffold_1 + retained_intron 4619268-4619989 asmbl_1681,asmbl_1682,asmbl_1684 // Exon Skipping and Retention # skipped_exon 5136946-5137638 (orient:+) max_ev_support = 2 # retained_exon 5137095-5137142 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 5137095-5137142 asmbl_1698 scaffold_1 + intron_skips_exon 5136946-5137638 asmbl_1696 // Retained and Spliced Intron # retained_intron 5206637-5207244 (orient:+) max_ev_support = 3 # spliced_intron 5206637-5207244 (orient:+) max_ev_support = 1 scaffold_1 + intron 5206637-5207244 asmbl_1704,asmbl_1705,asmbl_1707,asmbl_1708 scaffold_1 + retained_intron 5206637-5207244 asmbl_1702,asmbl_1703 // Retained and Spliced Intron # retained_intron 5205899-5206482 (orient:+) max_ev_support = 1 # spliced_intron 5205899-5206482 (orient:+) max_ev_support = 2 scaffold_1 + intron 5205899-5206482 asmbl_1702,asmbl_1703,asmbl_1706,asmbl_1707 scaffold_1 + retained_intron 5205899-5206482 asmbl_1704,asmbl_1705,asmbl_1708 // Retained and Spliced Intron # retained_intron 5208949-5209138 (orient:+) max_ev_support = 1 # spliced_intron 5208949-5209138 (orient:+) max_ev_support = 2 scaffold_1 + intron 5208949-5209138 asmbl_1702,asmbl_1703,asmbl_1707,asmbl_1710,asmbl_1711,asmbl_1712,asmbl_1713 scaffold_1 + retained_intron 5208949-5209138 asmbl_1709 // Retained and Spliced Intron # retained_intron 5207308-5207851 (orient:+) max_ev_support = 1 # spliced_intron 5207308-5207851 (orient:+) max_ev_support = 1 scaffold_1 + intron 5207308-5207851 asmbl_1703 scaffold_1 + retained_intron 5207308-5207851 asmbl_1711,asmbl_1713 // Retained and Spliced Intron # retained_intron 5207312-5207851 (orient:+) max_ev_support = 1 # spliced_intron 5207312-5207851 (orient:+) max_ev_support = 1 scaffold_1 + intron 5207312-5207851 asmbl_1710 scaffold_1 + retained_intron 5207312-5207851 asmbl_1711,asmbl_1713 // Retained and Spliced Intron # retained_intron 5207359-5207851 (orient:+) max_ev_support = 1 # spliced_intron 5207359-5207851 (orient:+) max_ev_support = 2 scaffold_1 + intron 5207359-5207851 asmbl_1702,asmbl_1707,asmbl_1709,asmbl_1712 scaffold_1 + retained_intron 5207359-5207851 asmbl_1711,asmbl_1713 // Retained and Spliced Intron # retained_intron 5618829-5618888 (orient:+) max_ev_support = 1 # spliced_intron 5618829-5618888 (orient:+) max_ev_support = 1 scaffold_1 + intron 5618829-5618888 asmbl_1728 scaffold_1 + retained_intron 5618829-5618888 asmbl_1726,asmbl_1727 // Retained and Spliced Intron # retained_intron 5645145-5645265 (orient:+) max_ev_support = 2 # spliced_intron 5645145-5645265 (orient:+) max_ev_support = 2 scaffold_1 + intron 5645145-5645265 asmbl_1735,asmbl_1736 scaffold_1 + retained_intron 5645145-5645265 asmbl_1733,asmbl_1734 // Retained and Spliced Intron # retained_intron 5705379-5705535 (orient:+) max_ev_support = 1 # spliced_intron 5705379-5705535 (orient:+) max_ev_support = 2 scaffold_1 + intron 5705379-5705535 asmbl_1747,asmbl_1750 scaffold_1 + retained_intron 5705379-5705535 asmbl_1749,asmbl_1751 // Retained and Spliced Intron # retained_intron 5706882-5706999 (orient:+) max_ev_support = 1 # spliced_intron 5706882-5706999 (orient:+) max_ev_support = 2 scaffold_1 + intron 5706882-5706999 asmbl_1747,asmbl_1749,asmbl_1751 scaffold_1 + retained_intron 5706882-5706999 asmbl_1750 // Retained and Spliced Intron # retained_intron 5735334-5735977 (orient:+) max_ev_support = 2 # spliced_intron 5735334-5735977 (orient:+) max_ev_support = 2 scaffold_1 + intron 5735334-5735977 asmbl_1758,asmbl_1759,asmbl_1762 scaffold_1 + retained_intron 5735334-5735977 asmbl_1760,asmbl_1763 // Retained and Spliced Intron # retained_intron 5736121-5736230 (orient:+) max_ev_support = 2 # spliced_intron 5736121-5736230 (orient:+) max_ev_support = 2 scaffold_1 + intron 5736121-5736230 asmbl_1758,asmbl_1759,asmbl_1762,asmbl_1763 scaffold_1 + retained_intron 5736121-5736230 asmbl_1760 // Retained and Spliced Intron # retained_intron 5734768-5734894 (orient:+) max_ev_support = 1 # spliced_intron 5734768-5734894 (orient:+) max_ev_support = 2 scaffold_1 + intron 5734768-5734894 asmbl_1758,asmbl_1759,asmbl_1762 scaffold_1 + retained_intron 5734768-5734894 asmbl_1761 // Retained and Spliced Intron # retained_intron 5735051-5735263 (orient:+) max_ev_support = 1 # spliced_intron 5735051-5735263 (orient:+) max_ev_support = 2 scaffold_1 + intron 5735051-5735263 asmbl_1758,asmbl_1759,asmbl_1762 scaffold_1 + retained_intron 5735051-5735263 asmbl_1761 // Retained and Spliced Intron # retained_intron 5734339-5734453 (orient:+) max_ev_support = 1 # spliced_intron 5734339-5734453 (orient:+) max_ev_support = 2 scaffold_1 + intron 5734339-5734453 asmbl_1758,asmbl_1759,asmbl_1761 scaffold_1 + retained_intron 5734339-5734453 asmbl_1762 // Retained and Spliced Intron # retained_intron 5739762-5739896 (orient:+) max_ev_support = 2 # spliced_intron 5739762-5739896 (orient:+) max_ev_support = 2 scaffold_1 + intron 5739762-5739896 asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771 scaffold_1 + retained_intron 5739762-5739896 asmbl_1766 // Retained and Spliced Intron # retained_intron 5739912-5740071 (orient:+) max_ev_support = 2 # spliced_intron 5739912-5740071 (orient:+) max_ev_support = 2 scaffold_1 + intron 5739912-5740071 asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770,asmbl_1771 scaffold_1 + retained_intron 5739912-5740071 asmbl_1766 // Retained and Spliced Intron # retained_intron 5741078-5741175 (orient:+) max_ev_support = 2 # spliced_intron 5741078-5741175 (orient:+) max_ev_support = 2 scaffold_1 + intron 5741078-5741175 asmbl_1764,asmbl_1769,asmbl_1770,asmbl_1771,asmbl_1772 scaffold_1 + retained_intron 5741078-5741175 asmbl_1767 // Retained and Spliced Intron # retained_intron 5740198-5740435 (orient:+) max_ev_support = 1 # spliced_intron 5740198-5740435 (orient:+) max_ev_support = 2 scaffold_1 + intron 5740198-5740435 asmbl_1764,asmbl_1769,asmbl_1770,asmbl_1771 scaffold_1 + retained_intron 5740198-5740435 asmbl_1768 // Retained and Spliced Intron # retained_intron 5738505-5739159 (orient:+) max_ev_support = 1 # spliced_intron 5738505-5739159 (orient:+) max_ev_support = 1 scaffold_1 + intron 5738505-5739159 asmbl_1770 scaffold_1 + retained_intron 5738505-5739159 asmbl_1769,asmbl_1771 // Retained and Spliced Intron # retained_intron 5739339-5739419 (orient:+) max_ev_support = 1 # spliced_intron 5739339-5739419 (orient:+) max_ev_support = 2 scaffold_1 + intron 5739339-5739419 asmbl_1764,asmbl_1768 scaffold_1 + retained_intron 5739339-5739419 asmbl_1769,asmbl_1770,asmbl_1771 // Retained and Spliced Intron # retained_intron 5739516-5739656 (orient:+) max_ev_support = 1 # spliced_intron 5739516-5739656 (orient:+) max_ev_support = 2 scaffold_1 + intron 5739516-5739656 asmbl_1764,asmbl_1768,asmbl_1769,asmbl_1770 scaffold_1 + retained_intron 5739516-5739656 asmbl_1771 // Retained and Spliced Intron # retained_intron 5743594-5743804 (orient:+) max_ev_support = 2 # spliced_intron 5743594-5743804 (orient:+) max_ev_support = 3 scaffold_1 + intron 5743594-5743804 asmbl_1773 scaffold_1 + retained_intron 5743594-5743804 asmbl_1774 // Retained and Spliced Intron # retained_intron 5748213-5748415 (orient:+) max_ev_support = 2 # spliced_intron 5748213-5748415 (orient:+) max_ev_support = 3 scaffold_1 + intron 5748213-5748415 asmbl_1775 scaffold_1 + retained_intron 5748213-5748415 asmbl_1776,asmbl_1777 // Retained and Spliced Intron # retained_intron 5748921-5749003 (orient:+) max_ev_support = 1 # spliced_intron 5748921-5749003 (orient:+) max_ev_support = 2 scaffold_1 + intron 5748921-5749003 asmbl_1775,asmbl_1776,asmbl_1777 scaffold_1 + retained_intron 5748921-5749003 asmbl_1778 // Retained and Spliced Intron # retained_intron 5750406-5750501 (orient:+) max_ev_support = 1 # spliced_intron 5750406-5750501 (orient:+) max_ev_support = 2 scaffold_1 + intron 5750406-5750501 asmbl_1775,asmbl_1776,asmbl_1777,asmbl_1778 scaffold_1 + retained_intron 5750406-5750501 asmbl_1779 // Retained and Spliced Intron # retained_intron 5957952-5958646 (orient:+) max_ev_support = 3 # spliced_intron 5957952-5958646 (orient:+) max_ev_support = 2 scaffold_1 + intron 5957952-5958646 asmbl_1791,asmbl_1792 scaffold_1 + retained_intron 5957952-5958646 asmbl_1790 // Exon Skipping and Retention # skipped_exon 5963866-5964377 (orient:+) max_ev_support = 1 # retained_exon 5963990-5964225 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 5963990-5964052,5964146-5964225 asmbl_1795,asmbl_1797 scaffold_1 + intron_skips_exon 5963866-5964377 asmbl_1796 // Retained and Spliced Intron # retained_intron 5964053-5964145 (orient:+) max_ev_support = 2 # spliced_intron 5964053-5964145 (orient:+) max_ev_support = 2 scaffold_1 + intron 5964053-5964145 asmbl_1795,asmbl_1797 scaffold_1 + retained_intron 5964053-5964145 asmbl_1799 // Exon Skipping and Retention # skipped_exon 6015395-6016010 (orient:+) max_ev_support = 1 # retained_exon 6015714-6015786 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6015714-6015786 asmbl_1809,asmbl_1810 scaffold_1 + intron_skips_exon 6015395-6016010 asmbl_1811 // Retained and Spliced Intron # retained_intron 6019056-6019228 (orient:+) max_ev_support = 1 # spliced_intron 6019056-6019228 (orient:+) max_ev_support = 2 scaffold_1 + intron 6019056-6019228 asmbl_1809,asmbl_1811 scaffold_1 + retained_intron 6019056-6019228 asmbl_1810 // Retained and Spliced Intron # retained_intron 6324338-6324422 (orient:+) max_ev_support = 1 # spliced_intron 6324338-6324422 (orient:+) max_ev_support = 2 scaffold_1 + intron 6324338-6324422 asmbl_1818,asmbl_1820 scaffold_1 + retained_intron 6324338-6324422 asmbl_1819 // Retained and Spliced Intron # retained_intron 6323837-6323948 (orient:+) max_ev_support = 1 # spliced_intron 6323837-6323948 (orient:+) max_ev_support = 2 scaffold_1 + intron 6323837-6323948 asmbl_1818,asmbl_1819 scaffold_1 + retained_intron 6323837-6323948 asmbl_1820 // Exon Skipping and Retention # skipped_exon 6327569-6328959 (orient:+) max_ev_support = 3 # retained_exon 6328573-6328587 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6328573-6328587 asmbl_1822,asmbl_1823 scaffold_1 + intron_skips_exon 6327569-6328959 asmbl_1821 // Retained and Spliced Intron # retained_intron 6328992-6329103 (orient:+) max_ev_support = 1 # spliced_intron 6328992-6329103 (orient:+) max_ev_support = 3 scaffold_1 + intron 6328992-6329103 asmbl_1821,asmbl_1822 scaffold_1 + retained_intron 6328992-6329103 asmbl_1823 // Retained and Spliced Intron # retained_intron 6682486-6683305 (orient:+) max_ev_support = 2 # spliced_intron 6682486-6683305 (orient:+) max_ev_support = 3 scaffold_1 + intron 6682486-6683305 asmbl_1839 scaffold_1 + retained_intron 6682486-6683305 asmbl_1840 // Exon Skipping and Retention # skipped_exon 6752679-6753323 (orient:+) max_ev_support = 2 # retained_exon 6752807-6752940 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 6752807-6752940 asmbl_1843 scaffold_1 + intron_skips_exon 6752679-6753323 asmbl_1842 // Retained and Spliced Intron # retained_intron 6953430-6953629 (orient:+) max_ev_support = 3 # spliced_intron 6953430-6953629 (orient:+) max_ev_support = 1 scaffold_1 + intron 6953430-6953629 asmbl_1854 scaffold_1 + retained_intron 6953430-6953629 asmbl_1853 // Retained and Spliced Intron # retained_intron 6972741-6972914 (orient:+) max_ev_support = 1 # spliced_intron 6972741-6972914 (orient:+) max_ev_support = 2 scaffold_1 + intron 6972741-6972914 asmbl_1861,asmbl_1862,asmbl_1864 scaffold_1 + retained_intron 6972741-6972914 asmbl_1863 // Retained and Spliced Intron # retained_intron 6973087-6973289 (orient:+) max_ev_support = 1 # spliced_intron 6973087-6973289 (orient:+) max_ev_support = 2 scaffold_1 + intron 6973087-6973289 asmbl_1861,asmbl_1862,asmbl_1863 scaffold_1 + retained_intron 6973087-6973289 asmbl_1864 // Retained and Spliced Intron # retained_intron 7097403-7097526 (orient:+) max_ev_support = 1 # spliced_intron 7097403-7097526 (orient:+) max_ev_support = 2 scaffold_1 + intron 7097403-7097526 asmbl_1876 scaffold_1 + retained_intron 7097403-7097526 asmbl_1877 // Retained and Spliced Intron # retained_intron 7290185-7290421 (orient:+) max_ev_support = 3 # spliced_intron 7290185-7290421 (orient:+) max_ev_support = 3 scaffold_1 + intron 7290185-7290421 asmbl_1891 scaffold_1 + retained_intron 7290185-7290421 asmbl_1890,asmbl_1893 // Retained and Spliced Intron # retained_intron 7290185-7290684 (orient:+) max_ev_support = 3 # spliced_intron 7290185-7290684 (orient:+) max_ev_support = 1 scaffold_1 + intron 7290185-7290684 asmbl_1892 scaffold_1 + retained_intron 7290185-7290684 asmbl_1890,asmbl_1893 // Retained and Spliced Intron # retained_intron 7773078-7773240 (orient:+) max_ev_support = 2 # spliced_intron 7773078-7773240 (orient:+) max_ev_support = 1 scaffold_1 + intron 7773078-7773240 asmbl_1912,asmbl_1913 scaffold_1 + retained_intron 7773078-7773240 asmbl_1911 // Retained and Spliced Intron # retained_intron 7814114-7814497 (orient:+) max_ev_support = 2 # spliced_intron 7814114-7814497 (orient:+) max_ev_support = 3 scaffold_1 + intron 7814114-7814497 asmbl_1918 scaffold_1 + retained_intron 7814114-7814497 asmbl_1919 // Retained and Spliced Intron # retained_intron 8789817-8789913 (orient:+) max_ev_support = 1 # spliced_intron 8789817-8789913 (orient:+) max_ev_support = 2 scaffold_1 + intron 8789817-8789913 asmbl_1934 scaffold_1 + retained_intron 8789817-8789913 asmbl_1936 // Retained and Spliced Intron # retained_intron 9254137-9254609 (orient:+) max_ev_support = 3 # spliced_intron 9254137-9254609 (orient:+) max_ev_support = 3 scaffold_1 + intron 9254137-9254609 asmbl_1960 scaffold_1 + retained_intron 9254137-9254609 asmbl_1961,asmbl_1964 // Retained and Spliced Intron # retained_intron 9254163-9254609 (orient:+) max_ev_support = 3 # spliced_intron 9254163-9254609 (orient:+) max_ev_support = 3 scaffold_1 + intron 9254163-9254609 asmbl_1962 scaffold_1 + retained_intron 9254163-9254609 asmbl_1961,asmbl_1964 // Retained and Spliced Intron # retained_intron 9294832-9294940 (orient:+) max_ev_support = 1 # spliced_intron 9294832-9294940 (orient:+) max_ev_support = 3 scaffold_1 + intron 9294832-9294940 asmbl_1966,asmbl_1968 scaffold_1 + retained_intron 9294832-9294940 asmbl_1967 // Retained and Spliced Intron # retained_intron 9298014-9298117 (orient:+) max_ev_support = 2 # spliced_intron 9298014-9298117 (orient:+) max_ev_support = 3 scaffold_1 + intron 9298014-9298117 asmbl_1966,asmbl_1967 scaffold_1 + retained_intron 9298014-9298117 asmbl_1968 // Retained and Spliced Intron # retained_intron 9306095-9306201 (orient:+) max_ev_support = 1 # spliced_intron 9306095-9306201 (orient:+) max_ev_support = 2 scaffold_1 + intron 9306095-9306201 asmbl_1970,asmbl_1972 scaffold_1 + retained_intron 9306095-9306201 asmbl_1971 // Retained and Spliced Intron # retained_intron 9306890-9306967 (orient:+) max_ev_support = 1 # spliced_intron 9306890-9306967 (orient:+) max_ev_support = 2 scaffold_1 + intron 9306890-9306967 asmbl_1970,asmbl_1971 scaffold_1 + retained_intron 9306890-9306967 asmbl_1972 // Exon Skipping and Retention # skipped_exon 9312842-9313118 (orient:+) max_ev_support = 1 # retained_exon 9312965-9313033 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 9312965-9313033 asmbl_1973 scaffold_1 + intron_skips_exon 9312842-9313118 asmbl_1974 // Exon Skipping and Retention # skipped_exon 10949081-10950931 (orient:+) max_ev_support = 2 # retained_exon 10949746-10950201 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 10949746-10950201 asmbl_2025,asmbl_2031 scaffold_1 + intron_skips_exon 10949081-10950931 asmbl_2027 // Retained and Spliced Intron # retained_intron 10950202-10950350 (orient:+) max_ev_support = 2 # spliced_intron 10950202-10950350 (orient:+) max_ev_support = 1 scaffold_1 + intron 10950202-10950350 asmbl_2031 scaffold_1 + retained_intron 10950202-10950350 asmbl_2026,asmbl_2028,asmbl_2029,asmbl_2030 // Retained and Spliced Intron # retained_intron 10950202-10950931 (orient:+) max_ev_support = 2 # spliced_intron 10950202-10950931 (orient:+) max_ev_support = 2 scaffold_1 + intron 10950202-10950931 asmbl_2025 scaffold_1 + retained_intron 10950202-10950931 asmbl_2026,asmbl_2028,asmbl_2029,asmbl_2030 // Retained and Spliced Intron # retained_intron 10950971-10951077 (orient:+) max_ev_support = 2 # spliced_intron 10950971-10951077 (orient:+) max_ev_support = 2 scaffold_1 + intron 10950971-10951077 asmbl_2025,asmbl_2027,asmbl_2028,asmbl_2030,asmbl_2031 scaffold_1 + retained_intron 10950971-10951077 asmbl_2026,asmbl_2029 // Retained and Spliced Intron # retained_intron 10951165-10951333 (orient:+) max_ev_support = 2 # spliced_intron 10951165-10951333 (orient:+) max_ev_support = 2 scaffold_1 + intron 10951165-10951333 asmbl_2025,asmbl_2027,asmbl_2028,asmbl_2030,asmbl_2031 scaffold_1 + retained_intron 10951165-10951333 asmbl_2026,asmbl_2029 // Retained and Spliced Intron # retained_intron 10949081-10949745 (orient:+) max_ev_support = 2 # spliced_intron 10949081-10949745 (orient:+) max_ev_support = 2 scaffold_1 + intron 10949081-10949745 asmbl_2025,asmbl_2026,asmbl_2030,asmbl_2031 scaffold_1 + retained_intron 10949081-10949745 asmbl_2028,asmbl_2029 // Retained and Spliced Intron # retained_intron 10949081-10950931 (orient:+) max_ev_support = 2 # spliced_intron 10949081-10950931 (orient:+) max_ev_support = 2 scaffold_1 + intron 10949081-10950931 asmbl_2027 scaffold_1 + retained_intron 10949081-10950931 asmbl_2028,asmbl_2029 // Retained and Spliced Intron # retained_intron 11066267-11066373 (orient:+) max_ev_support = 2 # spliced_intron 11066267-11066373 (orient:+) max_ev_support = 3 scaffold_1 + intron 11066267-11066373 asmbl_2040 scaffold_1 + retained_intron 11066267-11066373 asmbl_2041 // Retained and Spliced Intron # retained_intron 11068679-11068764 (orient:+) max_ev_support = 3 # spliced_intron 11068679-11068764 (orient:+) max_ev_support = 1 scaffold_1 + intron 11068679-11068764 asmbl_2045 scaffold_1 + retained_intron 11068679-11068764 asmbl_2043 // Retained and Spliced Intron # retained_intron 11173731-11174136 (orient:+) max_ev_support = 3 # spliced_intron 11173731-11174136 (orient:+) max_ev_support = 2 scaffold_1 + intron 11173731-11174136 asmbl_2065,asmbl_2066 scaffold_1 + retained_intron 11173731-11174136 asmbl_2064,asmbl_2069,asmbl_2076,asmbl_2077 // Retained and Spliced Intron # retained_intron 11173731-11174990 (orient:+) max_ev_support = 3 # spliced_intron 11173731-11174990 (orient:+) max_ev_support = 1 scaffold_1 + intron 11173731-11174990 asmbl_2074,asmbl_2075 scaffold_1 + retained_intron 11173731-11174990 asmbl_2064,asmbl_2076,asmbl_2077 // Retained and Spliced Intron # retained_intron 11174211-11174990 (orient:+) max_ev_support = 3 # spliced_intron 11174211-11174990 (orient:+) max_ev_support = 2 scaffold_1 + intron 11174211-11174990 asmbl_2066,asmbl_2069 scaffold_1 + retained_intron 11174211-11174990 asmbl_2064,asmbl_2065,asmbl_2076,asmbl_2077 // Exon Skipping and Retention # skipped_exon 11175075-11175728 (orient:+) max_ev_support = 1 # retained_exon 11175248-11175308 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 11175248-11175308 asmbl_2064,asmbl_2065,asmbl_2066,asmbl_2069,asmbl_2074,asmbl_2077 scaffold_1 + intron_skips_exon 11175075-11175728 asmbl_2076 // Exon Skipping and Retention # skipped_exon 11173731-11174990 (orient:+) max_ev_support = 1 # retained_exon 11174137-11174210 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11174137-11174210 asmbl_2066 scaffold_1 + intron_skips_exon 11173731-11174990 asmbl_2074,asmbl_2075 // Retained and Spliced Intron # retained_intron 11177521-11177606 (orient:+) max_ev_support = 1 # spliced_intron 11177521-11177606 (orient:+) max_ev_support = 3 scaffold_1 + intron 11177521-11177606 asmbl_2064,asmbl_2065,asmbl_2066,asmbl_2069,asmbl_2072,asmbl_2073,asmbl_2074,asmbl_2076 scaffold_1 + retained_intron 11177521-11177606 asmbl_2071 // Retained and Spliced Intron # retained_intron 11269937-11270054 (orient:+) max_ev_support = 1 # spliced_intron 11269937-11270054 (orient:+) max_ev_support = 1 scaffold_1 + intron 11269937-11270054 asmbl_2081 scaffold_1 + retained_intron 11269937-11270054 asmbl_2082 // Retained and Spliced Intron # retained_intron 11269947-11270054 (orient:+) max_ev_support = 1 # spliced_intron 11269947-11270054 (orient:+) max_ev_support = 3 scaffold_1 + intron 11269947-11270054 asmbl_2080 scaffold_1 + retained_intron 11269947-11270054 asmbl_2082 // Retained and Spliced Intron # retained_intron 11396225-11396399 (orient:+) max_ev_support = 1 # spliced_intron 11396225-11396399 (orient:+) max_ev_support = 2 scaffold_1 + intron 11396225-11396399 asmbl_2085 scaffold_1 + retained_intron 11396225-11396399 asmbl_2083 // Retained and Spliced Intron # retained_intron 11395793-11396048 (orient:+) max_ev_support = 1 # spliced_intron 11395793-11396048 (orient:+) max_ev_support = 2 scaffold_1 + intron 11395793-11396048 asmbl_2083,asmbl_2085 scaffold_1 + retained_intron 11395793-11396048 asmbl_2086 // Retained and Spliced Intron # retained_intron 11408932-11409031 (orient:+) max_ev_support = 2 # spliced_intron 11408932-11409031 (orient:+) max_ev_support = 3 scaffold_1 + intron 11408932-11409031 asmbl_2087 scaffold_1 + retained_intron 11408932-11409031 asmbl_2088 // Retained and Spliced Intron # retained_intron 11678500-11678600 (orient:+) max_ev_support = 1 # spliced_intron 11678500-11678600 (orient:+) max_ev_support = 1 scaffold_1 + intron 11678500-11678600 asmbl_2111 scaffold_1 + retained_intron 11678500-11678600 asmbl_2112 // Retained and Spliced Intron # retained_intron 11687601-11687763 (orient:+) max_ev_support = 2 # spliced_intron 11687601-11687763 (orient:+) max_ev_support = 3 scaffold_1 + intron 11687601-11687763 asmbl_2114 scaffold_1 + retained_intron 11687601-11687763 asmbl_2115 // Exon Skipping and Retention # skipped_exon 11745095-11746185 (orient:+) max_ev_support = 2 # retained_exon 11745463-11745630 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11745463-11745630 asmbl_2123 scaffold_1 + intron_skips_exon 11745095-11746185 asmbl_2124 // Retained and Spliced Intron # retained_intron 11769504-11769614 (orient:+) max_ev_support = 1 # spliced_intron 11769504-11769614 (orient:+) max_ev_support = 2 scaffold_1 + intron 11769504-11769614 asmbl_2129,asmbl_2131,asmbl_2132 scaffold_1 + retained_intron 11769504-11769614 asmbl_2130 // Exon Skipping and Retention # skipped_exon 11821382-11822845 (orient:+) max_ev_support = 3 # retained_exon 11821553-11821589 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 11821553-11821589 asmbl_2137 scaffold_1 + intron_skips_exon 11821382-11822845 asmbl_2136 // Retained and Spliced Intron # retained_intron 11895149-11895360 (orient:+) max_ev_support = 2 # spliced_intron 11895149-11895360 (orient:+) max_ev_support = 3 scaffold_1 + intron 11895149-11895360 asmbl_2144 scaffold_1 + retained_intron 11895149-11895360 asmbl_2145 // Exon Skipping and Retention # skipped_exon 11911574-11912158 (orient:+) max_ev_support = 2 # retained_exon 11911794-11911928 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 11911794-11911928 asmbl_2148 scaffold_1 + intron_skips_exon 11911574-11912158 asmbl_2149 // Retained and Spliced Intron # retained_intron 12407759-12407879 (orient:+) max_ev_support = 5 # spliced_intron 12407759-12407879 (orient:+) max_ev_support = 3 scaffold_1 + intron 12407759-12407879 asmbl_2193 scaffold_1 + retained_intron 12407759-12407879 asmbl_2192,asmbl_2194 // Retained and Spliced Intron # retained_intron 12407161-12407709 (orient:+) max_ev_support = 2 # spliced_intron 12407161-12407709 (orient:+) max_ev_support = 5 scaffold_1 + intron 12407161-12407709 asmbl_2192,asmbl_2193 scaffold_1 + retained_intron 12407161-12407709 asmbl_2194 // Retained and Spliced Intron # retained_intron 12410452-12410980 (orient:+) max_ev_support = 2 # spliced_intron 12410452-12410980 (orient:+) max_ev_support = 3 scaffold_1 + intron 12410452-12410980 asmbl_2195 scaffold_1 + retained_intron 12410452-12410980 asmbl_2196 // Retained and Spliced Intron # retained_intron 12410452-12410983 (orient:+) max_ev_support = 2 # spliced_intron 12410452-12410983 (orient:+) max_ev_support = 1 scaffold_1 + intron 12410452-12410983 asmbl_2197 scaffold_1 + retained_intron 12410452-12410983 asmbl_2196 // Exon Skipping and Retention # skipped_exon 12448352-12449057 (orient:+) max_ev_support = 3 # retained_exon 12448483-12448552 (orient:+) max_ev_support = 3 scaffold_1 + retained_exons 12448483-12448552 asmbl_2201,asmbl_2203,asmbl_2204,asmbl_2205,asmbl_2208 scaffold_1 + intron_skips_exon 12448352-12449057 asmbl_2202 // Exon Skipping and Retention # skipped_exon 12448553-12450376 (orient:+) max_ev_support = 3 # retained_exon 12449058-12450015 (orient:+) max_ev_support = 5 scaffold_1 + retained_exons 12449058-12450015 asmbl_2201,asmbl_2202,asmbl_2204 scaffold_1 + intron_skips_exon 12448553-12450376 asmbl_2205,asmbl_2208 // Retained and Spliced Intron # retained_intron 12450016-12450376 (orient:+) max_ev_support = 2 # spliced_intron 12450016-12450376 (orient:+) max_ev_support = 3 scaffold_1 + intron 12450016-12450376 asmbl_2201,asmbl_2202,asmbl_2204 scaffold_1 + retained_intron 12450016-12450376 asmbl_2203 // Retained and Spliced Intron # retained_intron 12450440-12450558 (orient:+) max_ev_support = 2 # spliced_intron 12450440-12450558 (orient:+) max_ev_support = 3 scaffold_1 + intron 12450440-12450558 asmbl_2201,asmbl_2202,asmbl_2203,asmbl_2205 scaffold_1 + retained_intron 12450440-12450558 asmbl_2206 // Retained and Spliced Intron # retained_intron 12450440-12450569 (orient:+) max_ev_support = 2 # spliced_intron 12450440-12450569 (orient:+) max_ev_support = 2 scaffold_1 + intron 12450440-12450569 asmbl_2204,asmbl_2208 scaffold_1 + retained_intron 12450440-12450569 asmbl_2206 // Retained and Spliced Intron # retained_intron 12453468-12453687 (orient:+) max_ev_support = 3 # spliced_intron 12453468-12453687 (orient:+) max_ev_support = 2 scaffold_1 + intron 12453468-12453687 asmbl_2210,asmbl_2212 scaffold_1 + retained_intron 12453468-12453687 asmbl_2209 // Retained and Spliced Intron # retained_intron 12452095-12452203 (orient:+) max_ev_support = 1 # spliced_intron 12452095-12452203 (orient:+) max_ev_support = 2 scaffold_1 + intron 12452095-12452203 asmbl_2209,asmbl_2210 scaffold_1 + retained_intron 12452095-12452203 asmbl_2211 // Retained and Spliced Intron # retained_intron 12452547-12452641 (orient:+) max_ev_support = 1 # spliced_intron 12452547-12452641 (orient:+) max_ev_support = 2 scaffold_1 + intron 12452547-12452641 asmbl_2209,asmbl_2210 scaffold_1 + retained_intron 12452547-12452641 asmbl_2211 // Retained and Spliced Intron # retained_intron 12453045-12453262 (orient:+) max_ev_support = 1 # spliced_intron 12453045-12453262 (orient:+) max_ev_support = 2 scaffold_1 + intron 12453045-12453262 asmbl_2209,asmbl_2210 scaffold_1 + retained_intron 12453045-12453262 asmbl_2212 // Retained and Spliced Intron # retained_intron 12564359-12564465 (orient:+) max_ev_support = 1 # spliced_intron 12564359-12564465 (orient:+) max_ev_support = 2 scaffold_1 + intron 12564359-12564465 asmbl_2218 scaffold_1 + retained_intron 12564359-12564465 asmbl_2219 // Retained and Spliced Intron # retained_intron 12683677-12684002 (orient:+) max_ev_support = 2 # spliced_intron 12683677-12684002 (orient:+) max_ev_support = 2 scaffold_1 + intron 12683677-12684002 asmbl_2231,asmbl_2233 scaffold_1 + retained_intron 12683677-12684002 asmbl_2230,asmbl_2232 // Retained and Spliced Intron # retained_intron 12683507-12683637 (orient:+) max_ev_support = 1 # spliced_intron 12683507-12683637 (orient:+) max_ev_support = 2 scaffold_1 + intron 12683507-12683637 asmbl_2230,asmbl_2231 scaffold_1 + retained_intron 12683507-12683637 asmbl_2232 // Retained and Spliced Intron # retained_intron 12683507-12683640 (orient:+) max_ev_support = 1 # spliced_intron 12683507-12683640 (orient:+) max_ev_support = 1 scaffold_1 + intron 12683507-12683640 asmbl_2233 scaffold_1 + retained_intron 12683507-12683640 asmbl_2232 // Retained and Spliced Intron # retained_intron 12754530-12756067 (orient:+) max_ev_support = 3 # spliced_intron 12754530-12756067 (orient:+) max_ev_support = 1 scaffold_1 + intron 12754530-12756067 asmbl_2238 scaffold_1 + retained_intron 12754530-12756067 asmbl_2237 // Retained and Spliced Intron # retained_intron 12754534-12756067 (orient:+) max_ev_support = 3 # spliced_intron 12754534-12756067 (orient:+) max_ev_support = 3 scaffold_1 + intron 12754534-12756067 asmbl_2236 scaffold_1 + retained_intron 12754534-12756067 asmbl_2237 // Retained and Spliced Intron # retained_intron 12915848-12915960 (orient:+) max_ev_support = 1 # spliced_intron 12915848-12915960 (orient:+) max_ev_support = 2 scaffold_1 + intron 12915848-12915960 asmbl_2257 scaffold_1 + retained_intron 12915848-12915960 asmbl_2259,asmbl_2260 // Retained and Spliced Intron # retained_intron 12916164-12916271 (orient:+) max_ev_support = 1 # spliced_intron 12916164-12916271 (orient:+) max_ev_support = 2 scaffold_1 + intron 12916164-12916271 asmbl_2257 scaffold_1 + retained_intron 12916164-12916271 asmbl_2259,asmbl_2260 // Retained and Spliced Intron # retained_intron 12916451-12916553 (orient:+) max_ev_support = 1 # spliced_intron 12916451-12916553 (orient:+) max_ev_support = 2 scaffold_1 + intron 12916451-12916553 asmbl_2257 scaffold_1 + retained_intron 12916451-12916553 asmbl_2259,asmbl_2260 // Retained and Spliced Intron # retained_intron 13030601-13030736 (orient:+) max_ev_support = 2 # spliced_intron 13030601-13030736 (orient:+) max_ev_support = 1 scaffold_1 + intron 13030601-13030736 asmbl_2280 scaffold_1 + retained_intron 13030601-13030736 asmbl_2279 // Exon Skipping and Retention # skipped_exon 13634564-13635831 (orient:+) max_ev_support = 2 # retained_exon 13634836-13634919 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 13634836-13634919 asmbl_2294 scaffold_1 + intron_skips_exon 13634564-13635831 asmbl_2293 // Retained and Spliced Intron # retained_intron 13890935-13891127 (orient:+) max_ev_support = 1 # spliced_intron 13890935-13891127 (orient:+) max_ev_support = 2 scaffold_1 + intron 13890935-13891127 asmbl_2303,asmbl_2304,asmbl_2308 scaffold_1 + retained_intron 13890935-13891127 asmbl_2309 // Retained and Spliced Intron # retained_intron 14182552-14182705 (orient:+) max_ev_support = 1 # spliced_intron 14182552-14182705 (orient:+) max_ev_support = 2 scaffold_1 + intron 14182552-14182705 asmbl_2317 scaffold_1 + retained_intron 14182552-14182705 asmbl_2318 // Retained and Spliced Intron # retained_intron 14181858-14181932 (orient:+) max_ev_support = 1 # spliced_intron 14181858-14181932 (orient:+) max_ev_support = 2 scaffold_1 + intron 14181858-14181932 asmbl_2317,asmbl_2318 scaffold_1 + retained_intron 14181858-14181932 asmbl_2319 // Retained and Spliced Intron # retained_intron 14201846-14202390 (orient:+) max_ev_support = 7 # spliced_intron 14201846-14202390 (orient:+) max_ev_support = 2 scaffold_1 + intron 14201846-14202390 asmbl_2325,asmbl_2327,asmbl_2329 scaffold_1 + retained_intron 14201846-14202390 asmbl_2322 // Retained and Spliced Intron # retained_intron 14200941-14201384 (orient:+) max_ev_support = 2 # spliced_intron 14200941-14201384 (orient:+) max_ev_support = 3 scaffold_1 + intron 14200941-14201384 asmbl_2322,asmbl_2325,asmbl_2327 scaffold_1 + retained_intron 14200941-14201384 asmbl_2323,asmbl_2324,asmbl_2329 // Exon Skipping and Retention # skipped_exon 14200941-14202390 (orient:+) max_ev_support = 3 # retained_exon 14201385-14201845 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 14201385-14201845 asmbl_2325,asmbl_2327 scaffold_1 + intron_skips_exon 14200941-14202390 asmbl_2326 // Retained and Spliced Intron # retained_intron 14216887-14216983 (orient:+) max_ev_support = 2 # spliced_intron 14216887-14216983 (orient:+) max_ev_support = 1 scaffold_1 + intron 14216887-14216983 asmbl_2333 scaffold_1 + retained_intron 14216887-14216983 asmbl_2332,asmbl_2334 // Retained and Spliced Intron # retained_intron 14274324-14274482 (orient:+) max_ev_support = 2 # spliced_intron 14274324-14274482 (orient:+) max_ev_support = 2 scaffold_1 + intron 14274324-14274482 asmbl_2342 scaffold_1 + retained_intron 14274324-14274482 asmbl_2343,asmbl_2348 // Retained and Spliced Intron # retained_intron 14277132-14277229 (orient:+) max_ev_support = 3 # spliced_intron 14277132-14277229 (orient:+) max_ev_support = 3 scaffold_1 + intron 14277132-14277229 asmbl_2342,asmbl_2343,asmbl_2347 scaffold_1 + retained_intron 14277132-14277229 asmbl_2344 // Retained and Spliced Intron # retained_intron 14276749-14276836 (orient:+) max_ev_support = 2 # spliced_intron 14276749-14276836 (orient:+) max_ev_support = 3 scaffold_1 + intron 14276749-14276836 asmbl_2342,asmbl_2343,asmbl_2344,asmbl_2347 scaffold_1 + retained_intron 14276749-14276836 asmbl_2345 // Retained and Spliced Intron # retained_intron 14273795-14273994 (orient:+) max_ev_support = 1 # spliced_intron 14273795-14273994 (orient:+) max_ev_support = 2 scaffold_1 + intron 14273795-14273994 asmbl_2342,asmbl_2343 scaffold_1 + retained_intron 14273795-14273994 asmbl_2348 // Retained and Spliced Intron # retained_intron 14274143-14274240 (orient:+) max_ev_support = 1 # spliced_intron 14274143-14274240 (orient:+) max_ev_support = 2 scaffold_1 + intron 14274143-14274240 asmbl_2342,asmbl_2343 scaffold_1 + retained_intron 14274143-14274240 asmbl_2348 // Retained and Spliced Intron # retained_intron 14304985-14305075 (orient:+) max_ev_support = 1 # spliced_intron 14304985-14305075 (orient:+) max_ev_support = 2 scaffold_1 + intron 14304985-14305075 asmbl_2354 scaffold_1 + retained_intron 14304985-14305075 asmbl_2355 // Retained and Spliced Intron # retained_intron 14305214-14305639 (orient:+) max_ev_support = 1 # spliced_intron 14305214-14305639 (orient:+) max_ev_support = 2 scaffold_1 + intron 14305214-14305639 asmbl_2354 scaffold_1 + retained_intron 14305214-14305639 asmbl_2355 // Retained and Spliced Intron # retained_intron 14305743-14305929 (orient:+) max_ev_support = 1 # spliced_intron 14305743-14305929 (orient:+) max_ev_support = 2 scaffold_1 + intron 14305743-14305929 asmbl_2354 scaffold_1 + retained_intron 14305743-14305929 asmbl_2355 // Retained and Spliced Intron # retained_intron 14320880-14321243 (orient:+) max_ev_support = 2 # spliced_intron 14320880-14321243 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320880-14321243 asmbl_2359 scaffold_1 + retained_intron 14320880-14321243 asmbl_2356,asmbl_2360 // Retained and Spliced Intron # retained_intron 14320893-14321243 (orient:+) max_ev_support = 2 # spliced_intron 14320893-14321243 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320893-14321243 asmbl_2357 scaffold_1 + retained_intron 14320893-14321243 asmbl_2356,asmbl_2360 // Exon Skipping and Retention # skipped_exon 14320593-14321243 (orient:+) max_ev_support = 2 # retained_exon 14320864-14320892 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 14320864-14320892 asmbl_2357 scaffold_1 + intron_skips_exon 14320593-14321243 asmbl_2358 // Retained and Spliced Intron # retained_intron 14320593-14320863 (orient:+) max_ev_support = 1 # spliced_intron 14320593-14320863 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320593-14320863 asmbl_2356,asmbl_2357,asmbl_2359 scaffold_1 + retained_intron 14320593-14320863 asmbl_2360 // Retained and Spliced Intron # retained_intron 14320593-14321243 (orient:+) max_ev_support = 1 # spliced_intron 14320593-14321243 (orient:+) max_ev_support = 2 scaffold_1 + intron 14320593-14321243 asmbl_2358 scaffold_1 + retained_intron 14320593-14321243 asmbl_2360 // Retained and Spliced Intron # retained_intron 14323382-14323737 (orient:+) max_ev_support = 1 # spliced_intron 14323382-14323737 (orient:+) max_ev_support = 2 scaffold_1 + intron 14323382-14323737 asmbl_2356,asmbl_2357,asmbl_2358,asmbl_2359,asmbl_2360 scaffold_1 + retained_intron 14323382-14323737 asmbl_2361 // Retained and Spliced Intron # retained_intron 14358804-14358965 (orient:+) max_ev_support = 2 # spliced_intron 14358804-14358965 (orient:+) max_ev_support = 1 scaffold_1 + intron 14358804-14358965 asmbl_2368 scaffold_1 + retained_intron 14358804-14358965 asmbl_2365,asmbl_2366,asmbl_2367,asmbl_2369 // Retained and Spliced Intron # retained_intron 14357027-14357107 (orient:+) max_ev_support = 1 # spliced_intron 14357027-14357107 (orient:+) max_ev_support = 2 scaffold_1 + intron 14357027-14357107 asmbl_2365,asmbl_2366,asmbl_2368 scaffold_1 + retained_intron 14357027-14357107 asmbl_2369 // Retained and Spliced Intron # retained_intron 14375886-14375983 (orient:+) max_ev_support = 2 # spliced_intron 14375886-14375983 (orient:+) max_ev_support = 2 scaffold_1 + intron 14375886-14375983 asmbl_2370 scaffold_1 + retained_intron 14375886-14375983 asmbl_2371 // Exon Skipping and Retention # skipped_exon 14964792-14965935 (orient:+) max_ev_support = 1 # retained_exon 14965422-14965493 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 14965422-14965493 asmbl_2394 scaffold_1 + intron_skips_exon 14964792-14965935 asmbl_2396 // Exon Skipping and Retention # skipped_exon 14962555-14965421 (orient:+) max_ev_support = 2 # retained_exon 14964720-14964791 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 14964720-14964791 asmbl_2396 scaffold_1 + intron_skips_exon 14962555-14965421 asmbl_2394 // Exon Skipping and Retention # skipped_exon 15280038-15281398 (orient:+) max_ev_support = 1 # retained_exon 15280154-15280373 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 15280154-15280373 asmbl_2415 scaffold_1 + intron_skips_exon 15280038-15281398 asmbl_2416 // Exon Skipping and Retention # skipped_exon 15280374-15281792 (orient:+) max_ev_support = 2 # retained_exon 15281399-15281618 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 15281399-15281618 asmbl_2416 scaffold_1 + intron_skips_exon 15280374-15281792 asmbl_2415 // Retained and Spliced Intron # retained_intron 15303957-15304040 (orient:+) max_ev_support = 2 # spliced_intron 15303957-15304040 (orient:+) max_ev_support = 3 scaffold_1 + intron 15303957-15304040 asmbl_2419 scaffold_1 + retained_intron 15303957-15304040 asmbl_2420,asmbl_2421 // Retained and Spliced Intron # retained_intron 15304128-15304231 (orient:+) max_ev_support = 2 # spliced_intron 15304128-15304231 (orient:+) max_ev_support = 3 scaffold_1 + intron 15304128-15304231 asmbl_2419,asmbl_2420 scaffold_1 + retained_intron 15304128-15304231 asmbl_2421 // Retained and Spliced Intron # retained_intron 15880705-15881317 (orient:+) max_ev_support = 2 # spliced_intron 15880705-15881317 (orient:+) max_ev_support = 3 scaffold_1 + intron 15880705-15881317 asmbl_2431 scaffold_1 + retained_intron 15880705-15881317 asmbl_2432,asmbl_2433 // Retained and Spliced Intron # retained_intron 15888312-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888312-15889037 (orient:+) max_ev_support = 3 scaffold_1 + intron 15888312-15889037 asmbl_2435 scaffold_1 + retained_intron 15888312-15889037 asmbl_2436 // Retained and Spliced Intron # retained_intron 15888360-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888360-15889037 (orient:+) max_ev_support = 2 scaffold_1 + intron 15888360-15889037 asmbl_2437 scaffold_1 + retained_intron 15888360-15889037 asmbl_2436 // Retained and Spliced Intron # retained_intron 15888475-15889037 (orient:+) max_ev_support = 2 # spliced_intron 15888475-15889037 (orient:+) max_ev_support = 1 scaffold_1 + intron 15888475-15889037 asmbl_2438 scaffold_1 + retained_intron 15888475-15889037 asmbl_2436 // Retained and Spliced Intron # retained_intron 16722860-16722887 (orient:+) max_ev_support = 1 # spliced_intron 16722860-16722887 (orient:+) max_ev_support = 1 scaffold_1 + intron 16722860-16722887 asmbl_2479 scaffold_1 + retained_intron 16722860-16722887 asmbl_2480 // Retained and Spliced Intron # retained_intron 16800305-16801968 (orient:+) max_ev_support = 4 # spliced_intron 16800305-16801968 (orient:+) max_ev_support = 2 scaffold_1 + intron 16800305-16801968 asmbl_2488 scaffold_1 + retained_intron 16800305-16801968 asmbl_2487 // Retained and Spliced Intron # retained_intron 17724961-17725166 (orient:+) max_ev_support = 2 # spliced_intron 17724961-17725166 (orient:+) max_ev_support = 3 scaffold_1 + intron 17724961-17725166 asmbl_2512,asmbl_2514,asmbl_2515 scaffold_1 + retained_intron 17724961-17725166 asmbl_2513 // Retained and Spliced Intron # retained_intron 17725231-17725595 (orient:+) max_ev_support = 2 # spliced_intron 17725231-17725595 (orient:+) max_ev_support = 3 scaffold_1 + intron 17725231-17725595 asmbl_2512 scaffold_1 + retained_intron 17725231-17725595 asmbl_2513,asmbl_2514,asmbl_2515 // Retained and Spliced Intron # retained_intron 17725702-17726002 (orient:+) max_ev_support = 1 # spliced_intron 17725702-17726002 (orient:+) max_ev_support = 3 scaffold_1 + intron 17725702-17726002 asmbl_2512,asmbl_2513,asmbl_2514 scaffold_1 + retained_intron 17725702-17726002 asmbl_2515 // Retained and Spliced Intron # retained_intron 17729072-17729199 (orient:+) max_ev_support = 1 # spliced_intron 17729072-17729199 (orient:+) max_ev_support = 1 scaffold_1 + intron 17729072-17729199 asmbl_2518 scaffold_1 + retained_intron 17729072-17729199 asmbl_2517 // Retained and Spliced Intron # retained_intron 17729078-17729199 (orient:+) max_ev_support = 1 # spliced_intron 17729078-17729199 (orient:+) max_ev_support = 2 scaffold_1 + intron 17729078-17729199 asmbl_2516 scaffold_1 + retained_intron 17729078-17729199 asmbl_2517 // Retained and Spliced Intron # retained_intron 18322459-18322534 (orient:+) max_ev_support = 2 # spliced_intron 18322459-18322534 (orient:+) max_ev_support = 1 scaffold_1 + intron 18322459-18322534 asmbl_2533 scaffold_1 + retained_intron 18322459-18322534 asmbl_2532,asmbl_2534 // Retained and Spliced Intron # retained_intron 18327108-18327318 (orient:+) max_ev_support = 1 # spliced_intron 18327108-18327318 (orient:+) max_ev_support = 2 scaffold_1 + intron 18327108-18327318 asmbl_2535 scaffold_1 + retained_intron 18327108-18327318 asmbl_2536 // Retained and Spliced Intron # retained_intron 18357390-18357458 (orient:+) max_ev_support = 3 # spliced_intron 18357390-18357458 (orient:+) max_ev_support = 1 scaffold_1 + intron 18357390-18357458 asmbl_2545 scaffold_1 + retained_intron 18357390-18357458 asmbl_2544 // Exon Skipping and Retention # skipped_exon 18763492-18766130 (orient:+) max_ev_support = 1 # retained_exon 18765211-18765283 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18765211-18765283 asmbl_2556 scaffold_1 + intron_skips_exon 18763492-18766130 asmbl_2557 // Exon Skipping and Retention # skipped_exon 18763264-18766130 (orient:+) max_ev_support = 1 # retained_exon 18765211-18765283 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18765211-18765283 asmbl_2556 scaffold_1 + intron_skips_exon 18763264-18766130 asmbl_2558 // Exon Skipping and Retention # skipped_exon 18763264-18765210 (orient:+) max_ev_support = 1 # retained_exon 18763419-18763491 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18763419-18763491 asmbl_2557 scaffold_1 + intron_skips_exon 18763264-18765210 asmbl_2556 // Exon Skipping and Retention # skipped_exon 18763264-18766130 (orient:+) max_ev_support = 1 # retained_exon 18763419-18763491 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 18763419-18763491 asmbl_2557 scaffold_1 + intron_skips_exon 18763264-18766130 asmbl_2558 // Retained and Spliced Intron # retained_intron 19006450-19006518 (orient:+) max_ev_support = 1 # spliced_intron 19006450-19006518 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006450-19006518 asmbl_2559 scaffold_1 + retained_intron 19006450-19006518 asmbl_2560,asmbl_2562 // Retained and Spliced Intron # retained_intron 19006302-19006412 (orient:+) max_ev_support = 1 # spliced_intron 19006302-19006412 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006302-19006412 asmbl_2560,asmbl_2561 scaffold_1 + retained_intron 19006302-19006412 asmbl_2562 // Retained and Spliced Intron # retained_intron 19006360-19006412 (orient:+) max_ev_support = 1 # spliced_intron 19006360-19006412 (orient:+) max_ev_support = 1 scaffold_1 + intron 19006360-19006412 asmbl_2559 scaffold_1 + retained_intron 19006360-19006412 asmbl_2562 // Exon Skipping and Retention # skipped_exon 19042448-19044609 (orient:+) max_ev_support = 1 # retained_exon 19042734-19043376 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 19042734-19043376 asmbl_2564 scaffold_1 + intron_skips_exon 19042448-19044609 asmbl_2565,asmbl_2566 // Retained and Spliced Intron # retained_intron 19045433-19045576 (orient:+) max_ev_support = 2 # spliced_intron 19045433-19045576 (orient:+) max_ev_support = 1 scaffold_1 + intron 19045433-19045576 asmbl_2566 scaffold_1 + retained_intron 19045433-19045576 asmbl_2564,asmbl_2565 // Retained and Spliced Intron # retained_intron 20132580-20132927 (orient:+) max_ev_support = 2 # spliced_intron 20132580-20132927 (orient:+) max_ev_support = 3 scaffold_1 + intron 20132580-20132927 asmbl_2594 scaffold_1 + retained_intron 20132580-20132927 asmbl_2595 // Retained and Spliced Intron # retained_intron 20338943-20339721 (orient:+) max_ev_support = 2 # spliced_intron 20338943-20339721 (orient:+) max_ev_support = 1 scaffold_1 + intron 20338943-20339721 asmbl_2614 scaffold_1 + retained_intron 20338943-20339721 asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615 // Retained and Spliced Intron # retained_intron 20338943-20340702 (orient:+) max_ev_support = 2 # spliced_intron 20338943-20340702 (orient:+) max_ev_support = 2 scaffold_1 + intron 20338943-20340702 asmbl_2603,asmbl_2606,asmbl_2609 scaffold_1 + retained_intron 20338943-20340702 asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615 // Retained and Spliced Intron # retained_intron 20339758-20340702 (orient:+) max_ev_support = 2 # spliced_intron 20339758-20340702 (orient:+) max_ev_support = 1 scaffold_1 + intron 20339758-20340702 asmbl_2614 scaffold_1 + retained_intron 20339758-20340702 asmbl_2602,asmbl_2604,asmbl_2605,asmbl_2608,asmbl_2615 // Retained and Spliced Intron # retained_intron 20347167-20348278 (orient:+) max_ev_support = 2 # spliced_intron 20347167-20348278 (orient:+) max_ev_support = 2 scaffold_1 + intron 20347167-20348278 asmbl_2606,asmbl_2611 scaffold_1 + retained_intron 20347167-20348278 asmbl_2602,asmbl_2603,asmbl_2604,asmbl_2608,asmbl_2610,asmbl_2612,asmbl_2614,asmbl_2615 // Retained and Spliced Intron # retained_intron 20354313-20354546 (orient:+) max_ev_support = 1 # spliced_intron 20354313-20354546 (orient:+) max_ev_support = 1 scaffold_1 + intron 20354313-20354546 asmbl_2602,asmbl_2603,asmbl_2604,asmbl_2606,asmbl_2607,asmbl_2608 scaffold_1 + retained_intron 20354313-20354546 asmbl_2613 // Exon Skipping and Retention # skipped_exon 20338943-20340702 (orient:+) max_ev_support = 2 # retained_exon 20339722-20339757 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 20339722-20339757 asmbl_2614 scaffold_1 + intron_skips_exon 20338943-20340702 asmbl_2603,asmbl_2606,asmbl_2609 // Retained and Spliced Intron # retained_intron 20460149-20460202 (orient:+) max_ev_support = 2 # spliced_intron 20460149-20460202 (orient:+) max_ev_support = 1 scaffold_1 + intron 20460149-20460202 asmbl_2625 scaffold_1 + retained_intron 20460149-20460202 asmbl_2624 // Retained and Spliced Intron # retained_intron 20699413-20699481 (orient:+) max_ev_support = 3 # spliced_intron 20699413-20699481 (orient:+) max_ev_support = 2 scaffold_1 + intron 20699413-20699481 asmbl_2637 scaffold_1 + retained_intron 20699413-20699481 asmbl_2636 // Exon Skipping and Retention # skipped_exon 20966469-20967714 (orient:+) max_ev_support = 1 # retained_exon 20967252-20967429 (orient:+) max_ev_support = 2 scaffold_1 + retained_exons 20967252-20967429 asmbl_2653 scaffold_1 + intron_skips_exon 20966469-20967714 asmbl_2654 // Retained and Spliced Intron # retained_intron 20988978-20989300 (orient:+) max_ev_support = 3 # spliced_intron 20988978-20989300 (orient:+) max_ev_support = 3 scaffold_1 + intron 20988978-20989300 asmbl_2659 scaffold_1 + retained_intron 20988978-20989300 asmbl_2658 // Retained and Spliced Intron # retained_intron 20989024-20989300 (orient:+) max_ev_support = 3 # spliced_intron 20989024-20989300 (orient:+) max_ev_support = 1 scaffold_1 + intron 20989024-20989300 asmbl_2660 scaffold_1 + retained_intron 20989024-20989300 asmbl_2658 // Retained and Spliced Intron # retained_intron 22129065-22129294 (orient:+) max_ev_support = 1 # spliced_intron 22129065-22129294 (orient:+) max_ev_support = 1 scaffold_1 + intron 22129065-22129294 asmbl_2669 scaffold_1 + retained_intron 22129065-22129294 asmbl_2670 // Retained and Spliced Intron # retained_intron 22133297-22134524 (orient:+) max_ev_support = 3 # spliced_intron 22133297-22134524 (orient:+) max_ev_support = 1 scaffold_1 + intron 22133297-22134524 asmbl_2673 scaffold_1 + retained_intron 22133297-22134524 asmbl_2671 // Exon Skipping and Retention # skipped_exon 22133297-22135537 (orient:+) max_ev_support = 1 # retained_exon 22135024-22135231 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22135024-22135231 asmbl_2671 scaffold_1 + intron_skips_exon 22133297-22135537 asmbl_2672 // Exon Skipping and Retention # skipped_exon 22371258-22372255 (orient:+) max_ev_support = 1 # retained_exon 22371428-22371479 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22371428-22371479 asmbl_2676,asmbl_2680 scaffold_1 + intron_skips_exon 22371258-22372255 asmbl_2677,asmbl_2678 // Exon Skipping and Retention # skipped_exon 22371748-22373576 (orient:+) max_ev_support = 1 # retained_exon 22372438-22372575 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22372438-22372575 asmbl_2676,asmbl_2680 scaffold_1 + intron_skips_exon 22371748-22373576 asmbl_2679 // Exon Skipping and Retention # skipped_exon 22371480-22372437 (orient:+) max_ev_support = 1 # retained_exon 22372256-22372307 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22372256-22372307 asmbl_2677,asmbl_2678 scaffold_1 + intron_skips_exon 22371480-22372437 asmbl_2676,asmbl_2680 // Exon Skipping and Retention # skipped_exon 22371480-22372437 (orient:+) max_ev_support = 1 # retained_exon 22371610-22371747 (orient:+) max_ev_support = 1 scaffold_1 + retained_exons 22371610-22371747 asmbl_2679 scaffold_1 + intron_skips_exon 22371480-22372437 asmbl_2676,asmbl_2680 // Retained and Spliced Intron # retained_intron 207548-207639 (orient:-) max_ev_support = 1 # spliced_intron 207548-207639 (orient:-) max_ev_support = 2 scaffold_10 - intron 207548-207639 asmbl_2839,asmbl_2842,asmbl_2843 scaffold_10 - retained_intron 207548-207639 asmbl_2841 // Retained and Spliced Intron # retained_intron 326050-326526 (orient:-) max_ev_support = 3 # spliced_intron 326050-326526 (orient:-) max_ev_support = 3 scaffold_10 - intron 326050-326526 asmbl_2849 scaffold_10 - retained_intron 326050-326526 asmbl_2848 // Retained and Spliced Intron # retained_intron 378745-378845 (orient:-) max_ev_support = 5 # spliced_intron 378745-378845 (orient:-) max_ev_support = 2 scaffold_10 - intron 378745-378845 asmbl_2867 scaffold_10 - retained_intron 378745-378845 asmbl_2863,asmbl_2864,asmbl_2865,asmbl_2866 // Retained and Spliced Intron # retained_intron 378915-379004 (orient:-) max_ev_support = 3 # spliced_intron 378915-379004 (orient:-) max_ev_support = 2 scaffold_10 - intron 378915-379004 asmbl_2865,asmbl_2867 scaffold_10 - retained_intron 378915-379004 asmbl_2863,asmbl_2864,asmbl_2866,asmbl_2868 // Retained and Spliced Intron # retained_intron 379136-379266 (orient:-) max_ev_support = 2 # spliced_intron 379136-379266 (orient:-) max_ev_support = 3 scaffold_10 - intron 379136-379266 asmbl_2863,asmbl_2864,asmbl_2865,asmbl_2867 scaffold_10 - retained_intron 379136-379266 asmbl_2866,asmbl_2868 // Retained and Spliced Intron # retained_intron 556785-556911 (orient:-) max_ev_support = 1 # spliced_intron 556785-556911 (orient:-) max_ev_support = 3 scaffold_10 - intron 556785-556911 asmbl_2885 scaffold_10 - retained_intron 556785-556911 asmbl_2886,asmbl_2887 // Retained and Spliced Intron # retained_intron 634820-635077 (orient:-) max_ev_support = 3 # spliced_intron 634820-635077 (orient:-) max_ev_support = 2 scaffold_10 - intron 634820-635077 asmbl_2891,asmbl_2892,asmbl_2893,asmbl_2895 scaffold_10 - retained_intron 634820-635077 asmbl_2890 // Retained and Spliced Intron # retained_intron 635222-635413 (orient:-) max_ev_support = 3 # spliced_intron 635222-635413 (orient:-) max_ev_support = 2 scaffold_10 - intron 635222-635413 asmbl_2891 scaffold_10 - retained_intron 635222-635413 asmbl_2890,asmbl_2893,asmbl_2895 // Retained and Spliced Intron # retained_intron 714718-715006 (orient:-) max_ev_support = 2 # spliced_intron 714718-715006 (orient:-) max_ev_support = 3 scaffold_10 - intron 714718-715006 asmbl_2904,asmbl_2907 scaffold_10 - retained_intron 714718-715006 asmbl_2905,asmbl_2908,asmbl_2909 // Retained and Spliced Intron # retained_intron 715100-715709 (orient:-) max_ev_support = 2 # spliced_intron 715100-715709 (orient:-) max_ev_support = 3 scaffold_10 - intron 715100-715709 asmbl_2904 scaffold_10 - retained_intron 715100-715709 asmbl_2905,asmbl_2907,asmbl_2908,asmbl_2909 // Retained and Spliced Intron # retained_intron 715906-716550 (orient:-) max_ev_support = 2 # spliced_intron 715906-716550 (orient:-) max_ev_support = 3 scaffold_10 - intron 715906-716550 asmbl_2904,asmbl_2909 scaffold_10 - retained_intron 715906-716550 asmbl_2905,asmbl_2907,asmbl_2908 // Retained and Spliced Intron # retained_intron 716590-716853 (orient:-) max_ev_support = 2 # spliced_intron 716590-716853 (orient:-) max_ev_support = 3 scaffold_10 - intron 716590-716853 asmbl_2904,asmbl_2909 scaffold_10 - retained_intron 716590-716853 asmbl_2905,asmbl_2907,asmbl_2908 // Retained and Spliced Intron # retained_intron 713246-713732 (orient:-) max_ev_support = 2 # spliced_intron 713246-713732 (orient:-) max_ev_support = 3 scaffold_10 - intron 713246-713732 asmbl_2904,asmbl_2905,asmbl_2907 scaffold_10 - retained_intron 713246-713732 asmbl_2906 // Retained and Spliced Intron # retained_intron 761892-761975 (orient:-) max_ev_support = 2 # spliced_intron 761892-761975 (orient:-) max_ev_support = 3 scaffold_10 - intron 761892-761975 asmbl_2921,asmbl_2922,asmbl_2924 scaffold_10 - retained_intron 761892-761975 asmbl_2923 // Exon Skipping and Retention # skipped_exon 926155-927706 (orient:-) max_ev_support = 1 # retained_exon 926313-926810 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 926313-926409,926651-926810 asmbl_2927,asmbl_2929 scaffold_10 - intron_skips_exon 926155-927706 asmbl_2930 // Retained and Spliced Intron # retained_intron 928914-929115 (orient:-) max_ev_support = 3 # spliced_intron 928914-929115 (orient:-) max_ev_support = 2 scaffold_10 - intron 928914-929115 asmbl_2932 scaffold_10 - retained_intron 928914-929115 asmbl_2931 // Exon Skipping and Retention # skipped_exon 974802-975513 (orient:-) max_ev_support = 2 # retained_exon 975308-975362 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 975308-975362 asmbl_2937,asmbl_2939 scaffold_10 - intron_skips_exon 974802-975513 asmbl_2936 // Retained and Spliced Intron # retained_intron 975363-975513 (orient:-) max_ev_support = 2 # spliced_intron 975363-975513 (orient:-) max_ev_support = 2 scaffold_10 - intron 975363-975513 asmbl_2937,asmbl_2939 scaffold_10 - retained_intron 975363-975513 asmbl_2938 // Retained and Spliced Intron # retained_intron 976769-976863 (orient:-) max_ev_support = 1 # spliced_intron 976769-976863 (orient:-) max_ev_support = 2 scaffold_10 - intron 976769-976863 asmbl_2936,asmbl_2937 scaffold_10 - retained_intron 976769-976863 asmbl_2939 // Exon Skipping and Retention # skipped_exon 986771-987975 (orient:-) max_ev_support = 1 # retained_exon 987263-987376 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 987263-987376 asmbl_2940,asmbl_2941 scaffold_10 - intron_skips_exon 986771-987975 asmbl_2942 // Retained and Spliced Intron # retained_intron 1076179-1076832 (orient:-) max_ev_support = 1 # spliced_intron 1076179-1076832 (orient:-) max_ev_support = 3 scaffold_10 - intron 1076179-1076832 asmbl_2958 scaffold_10 - retained_intron 1076179-1076832 asmbl_2959,asmbl_2960 // Retained and Spliced Intron # retained_intron 1445500-1445785 (orient:-) max_ev_support = 1 # spliced_intron 1445500-1445785 (orient:-) max_ev_support = 3 scaffold_10 - intron 1445500-1445785 asmbl_2969 scaffold_10 - retained_intron 1445500-1445785 asmbl_2972 // Exon Skipping and Retention # skipped_exon 1490744-1493412 (orient:-) max_ev_support = 2 # retained_exon 1492349-1492523 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1492349-1492523 asmbl_2976,asmbl_2980 scaffold_10 - intron_skips_exon 1490744-1493412 asmbl_2977 // Exon Skipping and Retention # skipped_exon 1491398-1494142 (orient:-) max_ev_support = 2 # retained_exon 1492349-1492523 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1492349-1492523 asmbl_2976,asmbl_2980 scaffold_10 - intron_skips_exon 1491398-1494142 asmbl_2978 // Exon Skipping and Retention # skipped_exon 1492524-1494142 (orient:-) max_ev_support = 2 # retained_exon 1493413-1493587 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1493413-1493587 asmbl_2977 scaffold_10 - intron_skips_exon 1492524-1494142 asmbl_2976,asmbl_2980 // Exon Skipping and Retention # skipped_exon 1491398-1494142 (orient:-) max_ev_support = 2 # retained_exon 1493413-1493587 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1493413-1493587 asmbl_2977 scaffold_10 - intron_skips_exon 1491398-1494142 asmbl_2978 // Exon Skipping and Retention # skipped_exon 1490744-1492348 (orient:-) max_ev_support = 2 # retained_exon 1491217-1491397 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1491217-1491397 asmbl_2978,asmbl_2980 scaffold_10 - intron_skips_exon 1490744-1492348 asmbl_2976 // Exon Skipping and Retention # skipped_exon 1976147-1977391 (orient:-) max_ev_support = 2 # retained_exon 1976446-1976636 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 1976446-1976636 asmbl_3002 scaffold_10 - intron_skips_exon 1976147-1977391 asmbl_3003 // Retained and Spliced Intron # retained_intron 1980607-1981557 (orient:-) max_ev_support = 2 # spliced_intron 1980607-1981557 (orient:-) max_ev_support = 2 scaffold_10 - intron 1980607-1981557 asmbl_3005 scaffold_10 - retained_intron 1980607-1981557 asmbl_3006 // Exon Skipping and Retention # skipped_exon 2658614-2659095 (orient:-) max_ev_support = 3 # retained_exon 2658975-2658996 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 2658975-2658996 asmbl_3028 scaffold_10 - intron_skips_exon 2658614-2659095 asmbl_3027 // Retained and Spliced Intron # retained_intron 2787464-2787760 (orient:-) max_ev_support = 3 # spliced_intron 2787464-2787760 (orient:-) max_ev_support = 5 scaffold_10 - intron 2787464-2787760 asmbl_3046 scaffold_10 - retained_intron 2787464-2787760 asmbl_3047,asmbl_3048 // Retained and Spliced Intron # retained_intron 2787857-2787930 (orient:-) max_ev_support = 3 # spliced_intron 2787857-2787930 (orient:-) max_ev_support = 5 scaffold_10 - intron 2787857-2787930 asmbl_3046,asmbl_3048 scaffold_10 - retained_intron 2787857-2787930 asmbl_3047 // Retained and Spliced Intron # retained_intron 3062983-3063389 (orient:-) max_ev_support = 3 # spliced_intron 3062983-3063389 (orient:-) max_ev_support = 2 scaffold_10 - intron 3062983-3063389 asmbl_3068 scaffold_10 - retained_intron 3062983-3063389 asmbl_3067 // Retained and Spliced Intron # retained_intron 3063468-3063729 (orient:-) max_ev_support = 3 # spliced_intron 3063468-3063729 (orient:-) max_ev_support = 2 scaffold_10 - intron 3063468-3063729 asmbl_3068 scaffold_10 - retained_intron 3063468-3063729 asmbl_3067 // Retained and Spliced Intron # retained_intron 3065795-3065893 (orient:-) max_ev_support = 2 # spliced_intron 3065795-3065893 (orient:-) max_ev_support = 1 scaffold_10 - intron 3065795-3065893 asmbl_3072,asmbl_3074 scaffold_10 - retained_intron 3065795-3065893 asmbl_3070,asmbl_3071,asmbl_3073 // Retained and Spliced Intron # retained_intron 3065795-3066072 (orient:-) max_ev_support = 1 # spliced_intron 3065795-3066072 (orient:-) max_ev_support = 3 scaffold_10 - intron 3065795-3066072 asmbl_3069 scaffold_10 - retained_intron 3065795-3066072 asmbl_3071 // Retained and Spliced Intron # retained_intron 3065944-3066072 (orient:-) max_ev_support = 1 # spliced_intron 3065944-3066072 (orient:-) max_ev_support = 2 scaffold_10 - intron 3065944-3066072 asmbl_3070,asmbl_3072,asmbl_3073 scaffold_10 - retained_intron 3065944-3066072 asmbl_3071,asmbl_3074 // Exon Skipping and Retention # skipped_exon 3065795-3066072 (orient:-) max_ev_support = 3 # retained_exon 3065894-3065943 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 3065894-3065943 asmbl_3072 scaffold_10 - intron_skips_exon 3065795-3066072 asmbl_3069 // Retained and Spliced Intron # retained_intron 3129058-3129956 (orient:-) max_ev_support = 5 # spliced_intron 3129058-3129956 (orient:-) max_ev_support = 3 scaffold_10 - intron 3129058-3129956 asmbl_3081 scaffold_10 - retained_intron 3129058-3129956 asmbl_3080 // Retained and Spliced Intron # retained_intron 3129132-3129956 (orient:-) max_ev_support = 5 # spliced_intron 3129132-3129956 (orient:-) max_ev_support = 1 scaffold_10 - intron 3129132-3129956 asmbl_3082 scaffold_10 - retained_intron 3129132-3129956 asmbl_3080 // Retained and Spliced Intron # retained_intron 3439144-3439233 (orient:-) max_ev_support = 2 # spliced_intron 3439144-3439233 (orient:-) max_ev_support = 1 scaffold_10 - intron 3439144-3439233 asmbl_3125 scaffold_10 - retained_intron 3439144-3439233 asmbl_3124 // Retained and Spliced Intron # retained_intron 3758123-3758321 (orient:-) max_ev_support = 1 # spliced_intron 3758123-3758321 (orient:-) max_ev_support = 1 scaffold_10 - intron 3758123-3758321 asmbl_3136 scaffold_10 - retained_intron 3758123-3758321 asmbl_3133,asmbl_3134 // Retained and Spliced Intron # retained_intron 3757724-3757863 (orient:-) max_ev_support = 1 # spliced_intron 3757724-3757863 (orient:-) max_ev_support = 1 scaffold_10 - intron 3757724-3757863 asmbl_3135 scaffold_10 - retained_intron 3757724-3757863 asmbl_3134,asmbl_3136 // Retained and Spliced Intron # retained_intron 3757724-3757878 (orient:-) max_ev_support = 1 # spliced_intron 3757724-3757878 (orient:-) max_ev_support = 1 scaffold_10 - intron 3757724-3757878 asmbl_3133 scaffold_10 - retained_intron 3757724-3757878 asmbl_3134,asmbl_3136 // Retained and Spliced Intron # retained_intron 3794012-3794169 (orient:-) max_ev_support = 2 # spliced_intron 3794012-3794169 (orient:-) max_ev_support = 1 scaffold_10 - intron 3794012-3794169 asmbl_3146 scaffold_10 - retained_intron 3794012-3794169 asmbl_3144 // Retained and Spliced Intron # retained_intron 3927526-3927935 (orient:-) max_ev_support = 1 # spliced_intron 3927526-3927935 (orient:-) max_ev_support = 1 scaffold_10 - intron 3927526-3927935 asmbl_3158 scaffold_10 - retained_intron 3927526-3927935 asmbl_3156 // Retained and Spliced Intron # retained_intron 3927526-3928121 (orient:-) max_ev_support = 1 # spliced_intron 3927526-3928121 (orient:-) max_ev_support = 2 scaffold_10 - intron 3927526-3928121 asmbl_3153,asmbl_3154,asmbl_3155,asmbl_3159 scaffold_10 - retained_intron 3927526-3928121 asmbl_3156 // Retained and Spliced Intron # retained_intron 3928652-3928785 (orient:-) max_ev_support = 1 # spliced_intron 3928652-3928785 (orient:-) max_ev_support = 2 scaffold_10 - intron 3928652-3928785 asmbl_3155 scaffold_10 - retained_intron 3928652-3928785 asmbl_3156 // Retained and Spliced Intron # retained_intron 3928652-3928827 (orient:-) max_ev_support = 1 # spliced_intron 3928652-3928827 (orient:-) max_ev_support = 2 scaffold_10 - intron 3928652-3928827 asmbl_3154,asmbl_3160 scaffold_10 - retained_intron 3928652-3928827 asmbl_3156 // Retained and Spliced Intron # retained_intron 4057996-4058495 (orient:-) max_ev_support = 4 # spliced_intron 4057996-4058495 (orient:-) max_ev_support = 2 scaffold_10 - intron 4057996-4058495 asmbl_3166,asmbl_3169 scaffold_10 - retained_intron 4057996-4058495 asmbl_3165 // Retained and Spliced Intron # retained_intron 4058608-4058757 (orient:-) max_ev_support = 2 # spliced_intron 4058608-4058757 (orient:-) max_ev_support = 2 scaffold_10 - intron 4058608-4058757 asmbl_3166,asmbl_3167 scaffold_10 - retained_intron 4058608-4058757 asmbl_3165,asmbl_3168 // Retained and Spliced Intron # retained_intron 4058608-4058815 (orient:-) max_ev_support = 2 # spliced_intron 4058608-4058815 (orient:-) max_ev_support = 2 scaffold_10 - intron 4058608-4058815 asmbl_3169,asmbl_3170 scaffold_10 - retained_intron 4058608-4058815 asmbl_3165,asmbl_3168 // Exon Skipping and Retention # skipped_exon 4057467-4058495 (orient:-) max_ev_support = 2 # retained_exon 4057952-4057995 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4057952-4057995 asmbl_3166,asmbl_3169 scaffold_10 - intron_skips_exon 4057467-4058495 asmbl_3167,asmbl_3168,asmbl_3170 // Exon Skipping and Retention # skipped_exon 4130696-4132212 (orient:-) max_ev_support = 2 # retained_exon 4131738-4131755 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 4131738-4131755 asmbl_3175,asmbl_3176 scaffold_10 - intron_skips_exon 4130696-4132212 asmbl_3174 // Retained and Spliced Intron # retained_intron 4149920-4150006 (orient:-) max_ev_support = 3 # spliced_intron 4149920-4150006 (orient:-) max_ev_support = 1 scaffold_10 - intron 4149920-4150006 asmbl_3181 scaffold_10 - retained_intron 4149920-4150006 asmbl_3179 // Exon Skipping and Retention # skipped_exon 4158723-4159782 (orient:-) max_ev_support = 2 # retained_exon 4159534-4159648 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4159534-4159648 asmbl_3183,asmbl_3185 scaffold_10 - intron_skips_exon 4158723-4159782 asmbl_3182 // Retained and Spliced Intron # retained_intron 4159649-4159782 (orient:-) max_ev_support = 1 # spliced_intron 4159649-4159782 (orient:-) max_ev_support = 2 scaffold_10 - intron 4159649-4159782 asmbl_3183,asmbl_3185 scaffold_10 - retained_intron 4159649-4159782 asmbl_3184 // Exon Skipping and Retention # skipped_exon 4335933-4337947 (orient:-) max_ev_support = 2 # retained_exon 4336877-4336915 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 4336877-4336915 asmbl_3198 scaffold_10 - intron_skips_exon 4335933-4337947 asmbl_3199 // Retained and Spliced Intron # retained_intron 4524826-4524957 (orient:-) max_ev_support = 1 # spliced_intron 4524826-4524957 (orient:-) max_ev_support = 1 scaffold_10 - intron 4524826-4524957 asmbl_3210 scaffold_10 - retained_intron 4524826-4524957 asmbl_3211 // Retained and Spliced Intron # retained_intron 4715798-4715921 (orient:-) max_ev_support = 1 # spliced_intron 4715798-4715921 (orient:-) max_ev_support = 2 scaffold_10 - intron 4715798-4715921 asmbl_3222 scaffold_10 - retained_intron 4715798-4715921 asmbl_3223 // Retained and Spliced Intron # retained_intron 4715798-4715969 (orient:-) max_ev_support = 1 # spliced_intron 4715798-4715969 (orient:-) max_ev_support = 1 scaffold_10 - intron 4715798-4715969 asmbl_3224 scaffold_10 - retained_intron 4715798-4715969 asmbl_3223 // Retained and Spliced Intron # retained_intron 5006392-5006680 (orient:-) max_ev_support = 4 # spliced_intron 5006392-5006680 (orient:-) max_ev_support = 2 scaffold_10 - intron 5006392-5006680 asmbl_3247,asmbl_3248 scaffold_10 - retained_intron 5006392-5006680 asmbl_3245,asmbl_3246 // Retained and Spliced Intron # retained_intron 5006780-5006917 (orient:-) max_ev_support = 2 # spliced_intron 5006780-5006917 (orient:-) max_ev_support = 3 scaffold_10 - intron 5006780-5006917 asmbl_3246,asmbl_3247,asmbl_3248 scaffold_10 - retained_intron 5006780-5006917 asmbl_3245 // Retained and Spliced Intron # retained_intron 5010843-5010929 (orient:-) max_ev_support = 2 # spliced_intron 5010843-5010929 (orient:-) max_ev_support = 1 scaffold_10 - intron 5010843-5010929 asmbl_3251 scaffold_10 - retained_intron 5010843-5010929 asmbl_3249 // Retained and Spliced Intron # retained_intron 5010430-5010561 (orient:-) max_ev_support = 2 # spliced_intron 5010430-5010561 (orient:-) max_ev_support = 1 scaffold_10 - intron 5010430-5010561 asmbl_3251 scaffold_10 - retained_intron 5010430-5010561 asmbl_3250 // Exon Skipping and Retention # skipped_exon 5009911-5010561 (orient:-) max_ev_support = 1 # retained_exon 5010325-5010429 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 5010325-5010429 asmbl_3251 scaffold_10 - intron_skips_exon 5009911-5010561 asmbl_3249,asmbl_3252 // Retained and Spliced Intron # retained_intron 5200830-5200903 (orient:-) max_ev_support = 2 # spliced_intron 5200830-5200903 (orient:-) max_ev_support = 2 scaffold_10 - intron 5200830-5200903 asmbl_3263 scaffold_10 - retained_intron 5200830-5200903 asmbl_3262,asmbl_3264 // Retained and Spliced Intron # retained_intron 5200984-5201075 (orient:-) max_ev_support = 1 # spliced_intron 5200984-5201075 (orient:-) max_ev_support = 2 scaffold_10 - intron 5200984-5201075 asmbl_3262,asmbl_3263 scaffold_10 - retained_intron 5200984-5201075 asmbl_3264 // Exon Skipping and Retention # skipped_exon 5258965-5259330 (orient:-) max_ev_support = 2 # retained_exon 5259104-5259245 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5259104-5259245 asmbl_3268 scaffold_10 - intron_skips_exon 5258965-5259330 asmbl_3269 // Exon Skipping and Retention # skipped_exon 5392562-5395407 (orient:-) max_ev_support = 1 # retained_exon 5393824-5393937 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 5393824-5393937 asmbl_3273,asmbl_3274 scaffold_10 - intron_skips_exon 5392562-5395407 asmbl_3278 // Retained and Spliced Intron # retained_intron 5535601-5535697 (orient:-) max_ev_support = 2 # spliced_intron 5535601-5535697 (orient:-) max_ev_support = 1 scaffold_10 - intron 5535601-5535697 asmbl_3287 scaffold_10 - retained_intron 5535601-5535697 asmbl_3286 // Exon Skipping and Retention # skipped_exon 5750331-5751625 (orient:-) max_ev_support = 2 # retained_exon 5751001-5751048 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5751001-5751048 asmbl_3298,asmbl_3299 scaffold_10 - intron_skips_exon 5750331-5751625 asmbl_3297 // Retained and Spliced Intron # retained_intron 5740585-5740787 (orient:-) max_ev_support = 1 # spliced_intron 5740585-5740787 (orient:-) max_ev_support = 2 scaffold_10 - intron 5740585-5740787 asmbl_3296,asmbl_3297,asmbl_3298,asmbl_3300 scaffold_10 - retained_intron 5740585-5740787 asmbl_3299 // Exon Skipping and Retention # skipped_exon 5848183-5849222 (orient:-) max_ev_support = 1 # retained_exon 5848545-5848715 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 5848545-5848715 asmbl_3307,asmbl_3308 scaffold_10 - intron_skips_exon 5848183-5849222 asmbl_3309 // Retained and Spliced Intron # retained_intron 5849287-5849521 (orient:-) max_ev_support = 2 # spliced_intron 5849287-5849521 (orient:-) max_ev_support = 2 scaffold_10 - intron 5849287-5849521 asmbl_3307 scaffold_10 - retained_intron 5849287-5849521 asmbl_3308,asmbl_3309 // Retained and Spliced Intron # retained_intron 5856417-5856955 (orient:-) max_ev_support = 1 # spliced_intron 5856417-5856955 (orient:-) max_ev_support = 2 scaffold_10 - intron 5856417-5856955 asmbl_3313,asmbl_3314,asmbl_3315 scaffold_10 - retained_intron 5856417-5856955 asmbl_3312 // Retained and Spliced Intron # retained_intron 5856417-5857533 (orient:-) max_ev_support = 1 # spliced_intron 5856417-5857533 (orient:-) max_ev_support = 1 scaffold_10 - intron 5856417-5857533 asmbl_3319 scaffold_10 - retained_intron 5856417-5857533 asmbl_3312 // Retained and Spliced Intron # retained_intron 5857032-5858338 (orient:-) max_ev_support = 3 # spliced_intron 5857032-5858338 (orient:-) max_ev_support = 2 scaffold_10 - intron 5857032-5858338 asmbl_3313,asmbl_3314,asmbl_3315 scaffold_10 - retained_intron 5857032-5858338 asmbl_3312 // Retained and Spliced Intron # retained_intron 5857610-5858338 (orient:-) max_ev_support = 3 # spliced_intron 5857610-5858338 (orient:-) max_ev_support = 1 scaffold_10 - intron 5857610-5858338 asmbl_3319 scaffold_10 - retained_intron 5857610-5858338 asmbl_3312 // Exon Skipping and Retention # skipped_exon 5856417-5857533 (orient:-) max_ev_support = 1 # retained_exon 5856956-5857031 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 5856956-5857031 asmbl_3313,asmbl_3314,asmbl_3315 scaffold_10 - intron_skips_exon 5856417-5857533 asmbl_3319 // Retained and Spliced Intron # retained_intron 5862111-5862269 (orient:-) max_ev_support = 2 # spliced_intron 5862111-5862269 (orient:-) max_ev_support = 2 scaffold_10 - intron 5862111-5862269 asmbl_3315,asmbl_3318 scaffold_10 - retained_intron 5862111-5862269 asmbl_3313,asmbl_3317 // Exon Skipping and Retention # skipped_exon 5857032-5858338 (orient:-) max_ev_support = 2 # retained_exon 5857534-5857609 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 5857534-5857609 asmbl_3319 scaffold_10 - intron_skips_exon 5857032-5858338 asmbl_3313,asmbl_3314,asmbl_3315 // Retained and Spliced Intron # retained_intron 5866632-5866731 (orient:-) max_ev_support = 1 # spliced_intron 5866632-5866731 (orient:-) max_ev_support = 3 scaffold_10 - intron 5866632-5866731 asmbl_3320 scaffold_10 - retained_intron 5866632-5866731 asmbl_3321 // Exon Skipping and Retention # skipped_exon 6017831-6019242 (orient:-) max_ev_support = 1 # retained_exon 6018838-6018961 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6018838-6018961 asmbl_3334 scaffold_10 - intron_skips_exon 6017831-6019242 asmbl_3336 // Exon Skipping and Retention # skipped_exon 6017831-6018837 (orient:-) max_ev_support = 2 # retained_exon 6018625-6018719 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6018625-6018719 asmbl_3335 scaffold_10 - intron_skips_exon 6017831-6018837 asmbl_3334 // Retained and Spliced Intron # retained_intron 6074390-6075518 (orient:-) max_ev_support = 1 # spliced_intron 6074390-6075518 (orient:-) max_ev_support = 1 scaffold_10 - intron 6074390-6075518 asmbl_3341,asmbl_3342,asmbl_3348,asmbl_3349,asmbl_3350 scaffold_10 - retained_intron 6074390-6075518 asmbl_3340,asmbl_3344,asmbl_3345,asmbl_3346,asmbl_3347 // Retained and Spliced Intron # retained_intron 6075638-6075745 (orient:-) max_ev_support = 1 # spliced_intron 6075638-6075745 (orient:-) max_ev_support = 1 scaffold_10 - intron 6075638-6075745 asmbl_3342,asmbl_3345,asmbl_3350 scaffold_10 - retained_intron 6075638-6075745 asmbl_3340,asmbl_3341,asmbl_3344,asmbl_3346,asmbl_3347,asmbl_3348,asmbl_3349 // Retained and Spliced Intron # retained_intron 6076482-6078706 (orient:-) max_ev_support = 3 # spliced_intron 6076482-6078706 (orient:-) max_ev_support = 1 scaffold_10 - intron 6076482-6078706 asmbl_3349 scaffold_10 - retained_intron 6076482-6078706 asmbl_3340,asmbl_3341,asmbl_3342 // Retained and Spliced Intron # retained_intron 6077386-6078828 (orient:-) max_ev_support = 3 # spliced_intron 6077386-6078828 (orient:-) max_ev_support = 1 scaffold_10 - intron 6077386-6078828 asmbl_3348,asmbl_3350 scaffold_10 - retained_intron 6077386-6078828 asmbl_3340,asmbl_3341,asmbl_3342 // Retained and Spliced Intron # retained_intron 6071958-6072084 (orient:-) max_ev_support = 1 # spliced_intron 6071958-6072084 (orient:-) max_ev_support = 2 scaffold_10 - intron 6071958-6072084 asmbl_3340,asmbl_3341,asmbl_3344,asmbl_3345,asmbl_3347,asmbl_3348,asmbl_3349 scaffold_10 - retained_intron 6071958-6072084 asmbl_3342,asmbl_3346,asmbl_3350 // Retained and Spliced Intron # retained_intron 6070501-6070618 (orient:-) max_ev_support = 1 # spliced_intron 6070501-6070618 (orient:-) max_ev_support = 2 scaffold_10 - intron 6070501-6070618 asmbl_3340,asmbl_3341,asmbl_3345,asmbl_3346,asmbl_3347,asmbl_3348 scaffold_10 - retained_intron 6070501-6070618 asmbl_3344 // Retained and Spliced Intron # retained_intron 6447456-6447566 (orient:-) max_ev_support = 1 # spliced_intron 6447456-6447566 (orient:-) max_ev_support = 1 scaffold_10 - intron 6447456-6447566 asmbl_3375 scaffold_10 - retained_intron 6447456-6447566 asmbl_3374,asmbl_3376 // Retained and Spliced Intron # retained_intron 6466373-6466479 (orient:-) max_ev_support = 1 # spliced_intron 6466373-6466479 (orient:-) max_ev_support = 1 scaffold_10 - intron 6466373-6466479 asmbl_3380,asmbl_3382,asmbl_3383,asmbl_3385 scaffold_10 - retained_intron 6466373-6466479 asmbl_3381,asmbl_3384 // Retained and Spliced Intron # retained_intron 6467752-6468715 (orient:-) max_ev_support = 1 # spliced_intron 6467752-6468715 (orient:-) max_ev_support = 1 scaffold_10 - intron 6467752-6468715 asmbl_3380,asmbl_3381,asmbl_3383,asmbl_3384 scaffold_10 - retained_intron 6467752-6468715 asmbl_3382,asmbl_3385 // Exon Skipping and Retention # skipped_exon 6598282-6598969 (orient:-) max_ev_support = 1 # retained_exon 6598566-6598635 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6598566-6598635 asmbl_3393,asmbl_3395 scaffold_10 - intron_skips_exon 6598282-6598969 asmbl_3394 // Exon Skipping and Retention # skipped_exon 6598053-6598565 (orient:-) max_ev_support = 2 # retained_exon 6598212-6598281 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 6598212-6598281 asmbl_3394 scaffold_10 - intron_skips_exon 6598053-6598565 asmbl_3393,asmbl_3395 // Retained and Spliced Intron # retained_intron 6671059-6671455 (orient:-) max_ev_support = 1 # spliced_intron 6671059-6671455 (orient:-) max_ev_support = 1 scaffold_10 - intron 6671059-6671455 asmbl_3405 scaffold_10 - retained_intron 6671059-6671455 asmbl_3403,asmbl_3404 // Exon Skipping and Retention # skipped_exon 6672572-6673240 (orient:-) max_ev_support = 1 # retained_exon 6673015-6673106 (orient:-) max_ev_support = 3 scaffold_10 - retained_exons 6673015-6673106 asmbl_3403 scaffold_10 - intron_skips_exon 6672572-6673240 asmbl_3404,asmbl_3405,asmbl_3406 // Retained and Spliced Intron # retained_intron 6672054-6672407 (orient:-) max_ev_support = 1 # spliced_intron 6672054-6672407 (orient:-) max_ev_support = 1 scaffold_10 - intron 6672054-6672407 asmbl_3403,asmbl_3406 scaffold_10 - retained_intron 6672054-6672407 asmbl_3404,asmbl_3405 // Exon Skipping and Retention # skipped_exon 6674039-6675082 (orient:-) max_ev_support = 1 # retained_exon 6674432-6674521 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 6674432-6674521 asmbl_3404,asmbl_3405,asmbl_3406 scaffold_10 - intron_skips_exon 6674039-6675082 asmbl_3403 // Exon Skipping and Retention # skipped_exon 6705691-6706060 (orient:-) max_ev_support = 1 # retained_exon 6705881-6705953 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 6705881-6705953 asmbl_3410 scaffold_10 - intron_skips_exon 6705691-6706060 asmbl_3412 // Retained and Spliced Intron # retained_intron 6757359-6757457 (orient:-) max_ev_support = 1 # spliced_intron 6757359-6757457 (orient:-) max_ev_support = 2 scaffold_10 - intron 6757359-6757457 asmbl_3417 scaffold_10 - retained_intron 6757359-6757457 asmbl_3418 // Retained and Spliced Intron # retained_intron 6867580-6867771 (orient:-) max_ev_support = 1 # spliced_intron 6867580-6867771 (orient:-) max_ev_support = 2 scaffold_10 - intron 6867580-6867771 asmbl_3423 scaffold_10 - retained_intron 6867580-6867771 asmbl_3425,asmbl_3427 // Retained and Spliced Intron # retained_intron 6867580-6867786 (orient:-) max_ev_support = 1 # spliced_intron 6867580-6867786 (orient:-) max_ev_support = 2 scaffold_10 - intron 6867580-6867786 asmbl_3424,asmbl_3426,asmbl_3428 scaffold_10 - retained_intron 6867580-6867786 asmbl_3425,asmbl_3427 // Retained and Spliced Intron # retained_intron 6869034-6869156 (orient:-) max_ev_support = 1 # spliced_intron 6869034-6869156 (orient:-) max_ev_support = 2 scaffold_10 - intron 6869034-6869156 asmbl_3423,asmbl_3424,asmbl_3426,asmbl_3427,asmbl_3428 scaffold_10 - retained_intron 6869034-6869156 asmbl_3425 // Retained and Spliced Intron # retained_intron 6870397-6870533 (orient:-) max_ev_support = 1 # spliced_intron 6870397-6870533 (orient:-) max_ev_support = 2 scaffold_10 - intron 6870397-6870533 asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3427,asmbl_3428 scaffold_10 - retained_intron 6870397-6870533 asmbl_3426,asmbl_3429 // Retained and Spliced Intron # retained_intron 6871848-6872357 (orient:-) max_ev_support = 1 # spliced_intron 6871848-6872357 (orient:-) max_ev_support = 2 scaffold_10 - intron 6871848-6872357 asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3426,asmbl_3427 scaffold_10 - retained_intron 6871848-6872357 asmbl_3428 // Retained and Spliced Intron # retained_intron 6870182-6870280 (orient:-) max_ev_support = 1 # spliced_intron 6870182-6870280 (orient:-) max_ev_support = 2 scaffold_10 - intron 6870182-6870280 asmbl_3423,asmbl_3424,asmbl_3425,asmbl_3426,asmbl_3427,asmbl_3428 scaffold_10 - retained_intron 6870182-6870280 asmbl_3429 // Exon Skipping and Retention # skipped_exon 7250455-7252650 (orient:-) max_ev_support = 3 # retained_exon 7250740-7252303 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 7250740-7250778,7251667-7251699,7252256-7252303 asmbl_3450,asmbl_3452 scaffold_10 - intron_skips_exon 7250455-7252650 asmbl_3449,asmbl_3453 // Retained and Spliced Intron # retained_intron 7282966-7283052 (orient:-) max_ev_support = 1 # spliced_intron 7282966-7283052 (orient:-) max_ev_support = 3 scaffold_10 - intron 7282966-7283052 asmbl_3456,asmbl_3457 scaffold_10 - retained_intron 7282966-7283052 asmbl_3459 // Retained and Spliced Intron # retained_intron 7765135-7765301 (orient:-) max_ev_support = 1 # spliced_intron 7765135-7765301 (orient:-) max_ev_support = 2 scaffold_10 - intron 7765135-7765301 asmbl_3465,asmbl_3466 scaffold_10 - retained_intron 7765135-7765301 asmbl_3467,asmbl_3468 // Exon Skipping and Retention # skipped_exon 7796671-7799332 (orient:-) max_ev_support = 1 # retained_exon 7797564-7797608 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 7797564-7797608 asmbl_3471,asmbl_3472 scaffold_10 - intron_skips_exon 7796671-7799332 asmbl_3473 // Retained and Spliced Intron # retained_intron 7827883-7827959 (orient:-) max_ev_support = 2 # spliced_intron 7827883-7827959 (orient:-) max_ev_support = 2 scaffold_10 - intron 7827883-7827959 asmbl_3478 scaffold_10 - retained_intron 7827883-7827959 asmbl_3479 // Retained and Spliced Intron # retained_intron 8319997-8320745 (orient:-) max_ev_support = 1 # spliced_intron 8319997-8320745 (orient:-) max_ev_support = 1 scaffold_10 - intron 8319997-8320745 asmbl_3490 scaffold_10 - retained_intron 8319997-8320745 asmbl_3489 // Retained and Spliced Intron # retained_intron 8329038-8329329 (orient:-) max_ev_support = 1 # spliced_intron 8329038-8329329 (orient:-) max_ev_support = 1 scaffold_10 - intron 8329038-8329329 asmbl_3496 scaffold_10 - retained_intron 8329038-8329329 asmbl_3495 // Retained and Spliced Intron # retained_intron 8492106-8492342 (orient:-) max_ev_support = 1 # spliced_intron 8492106-8492342 (orient:-) max_ev_support = 3 scaffold_10 - intron 8492106-8492342 asmbl_3506 scaffold_10 - retained_intron 8492106-8492342 asmbl_3507,asmbl_3508 // Retained and Spliced Intron # retained_intron 8546671-8546911 (orient:-) max_ev_support = 2 # spliced_intron 8546671-8546911 (orient:-) max_ev_support = 1 scaffold_10 - intron 8546671-8546911 asmbl_3510 scaffold_10 - retained_intron 8546671-8546911 asmbl_3509,asmbl_3511 // Retained and Spliced Intron # retained_intron 8894175-8894277 (orient:-) max_ev_support = 2 # spliced_intron 8894175-8894277 (orient:-) max_ev_support = 1 scaffold_10 - intron 8894175-8894277 asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540 scaffold_10 - retained_intron 8894175-8894277 asmbl_3531 // Retained and Spliced Intron # retained_intron 8894400-8894642 (orient:-) max_ev_support = 1 # spliced_intron 8894400-8894642 (orient:-) max_ev_support = 1 scaffold_10 - intron 8894400-8894642 asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542 scaffold_10 - retained_intron 8894400-8894642 asmbl_3532 // Retained and Spliced Intron # retained_intron 8896299-8896584 (orient:-) max_ev_support = 1 # spliced_intron 8896299-8896584 (orient:-) max_ev_support = 1 scaffold_10 - intron 8896299-8896584 asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542 scaffold_10 - retained_intron 8896299-8896584 asmbl_3532,asmbl_3533 // Retained and Spliced Intron # retained_intron 8895840-8895918 (orient:-) max_ev_support = 1 # spliced_intron 8895840-8895918 (orient:-) max_ev_support = 1 scaffold_10 - intron 8895840-8895918 asmbl_3532,asmbl_3533,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3541 scaffold_10 - retained_intron 8895840-8895918 asmbl_3534,asmbl_3542 // Retained and Spliced Intron # retained_intron 8895156-8895317 (orient:-) max_ev_support = 1 # spliced_intron 8895156-8895317 (orient:-) max_ev_support = 1 scaffold_10 - intron 8895156-8895317 asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3537,asmbl_3538,asmbl_3539,asmbl_3540,asmbl_3542 scaffold_10 - retained_intron 8895156-8895317 asmbl_3536,asmbl_3541 // Retained and Spliced Intron # retained_intron 8897598-8897769 (orient:-) max_ev_support = 1 # spliced_intron 8897598-8897769 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897598-8897769 asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3539,asmbl_3540,asmbl_3542 scaffold_10 - retained_intron 8897598-8897769 asmbl_3537,asmbl_3541 // Retained and Spliced Intron # retained_intron 8897211-8897475 (orient:-) max_ev_support = 1 # spliced_intron 8897211-8897475 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897211-8897475 asmbl_3532 scaffold_10 - retained_intron 8897211-8897475 asmbl_3538 // Retained and Spliced Intron # retained_intron 8897219-8897475 (orient:-) max_ev_support = 1 # spliced_intron 8897219-8897475 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897219-8897475 asmbl_3533,asmbl_3534,asmbl_3536,asmbl_3539,asmbl_3540,asmbl_3542 scaffold_10 - retained_intron 8897219-8897475 asmbl_3538 // Retained and Spliced Intron # retained_intron 8897245-8897475 (orient:-) max_ev_support = 1 # spliced_intron 8897245-8897475 (orient:-) max_ev_support = 1 scaffold_10 - intron 8897245-8897475 asmbl_3535,asmbl_3537,asmbl_3541 scaffold_10 - retained_intron 8897245-8897475 asmbl_3538 // Retained and Spliced Intron # retained_intron 8896936-8897048 (orient:-) max_ev_support = 1 # spliced_intron 8896936-8897048 (orient:-) max_ev_support = 1 scaffold_10 - intron 8896936-8897048 asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3538,asmbl_3540,asmbl_3541 scaffold_10 - retained_intron 8896936-8897048 asmbl_3539,asmbl_3542 // Retained and Spliced Intron # retained_intron 8898870-8899178 (orient:-) max_ev_support = 1 # spliced_intron 8898870-8899178 (orient:-) max_ev_support = 1 scaffold_10 - intron 8898870-8899178 asmbl_3532,asmbl_3533,asmbl_3534,asmbl_3535,asmbl_3536,asmbl_3537,asmbl_3539,asmbl_3540,asmbl_3541,asmbl_3542 scaffold_10 - retained_intron 8898870-8899178 asmbl_3543 // Retained and Spliced Intron # retained_intron 8901030-8901211 (orient:-) max_ev_support = 1 # spliced_intron 8901030-8901211 (orient:-) max_ev_support = 1 scaffold_10 - intron 8901030-8901211 asmbl_3545 scaffold_10 - retained_intron 8901030-8901211 asmbl_3546 // Retained and Spliced Intron # retained_intron 9043353-9045014 (orient:-) max_ev_support = 3 # spliced_intron 9043353-9045014 (orient:-) max_ev_support = 2 scaffold_10 - intron 9043353-9045014 asmbl_3566 scaffold_10 - retained_intron 9043353-9045014 asmbl_3565 // Exon Skipping and Retention # skipped_exon 9060945-9062853 (orient:-) max_ev_support = 2 # retained_exon 9061441-9061569 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 9061441-9061569 asmbl_3571 scaffold_10 - intron_skips_exon 9060945-9062853 asmbl_3570 // Retained and Spliced Intron # retained_intron 10283622-10283975 (orient:-) max_ev_support = 2 # spliced_intron 10283622-10283975 (orient:-) max_ev_support = 1 scaffold_10 - intron 10283622-10283975 asmbl_3621 scaffold_10 - retained_intron 10283622-10283975 asmbl_3616 // Retained and Spliced Intron # retained_intron 10324675-10324702 (orient:-) max_ev_support = 1 # spliced_intron 10324675-10324702 (orient:-) max_ev_support = 1 scaffold_10 - intron 10324675-10324702 asmbl_3629 scaffold_10 - retained_intron 10324675-10324702 asmbl_3628 // Exon Skipping and Retention # skipped_exon 10641555-10642467 (orient:-) max_ev_support = 1 # retained_exon 10641909-10642036 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 10641909-10642036 asmbl_3657 scaffold_10 - intron_skips_exon 10641555-10642467 asmbl_3658 // Retained and Spliced Intron # retained_intron 11911250-11911410 (orient:-) max_ev_support = 4 # spliced_intron 11911250-11911410 (orient:-) max_ev_support = 2 scaffold_10 - intron 11911250-11911410 asmbl_3704,asmbl_3705 scaffold_10 - retained_intron 11911250-11911410 asmbl_3702,asmbl_3703 // Retained and Spliced Intron # retained_intron 11917146-11917229 (orient:-) max_ev_support = 1 # spliced_intron 11917146-11917229 (orient:-) max_ev_support = 2 scaffold_10 - intron 11917146-11917229 asmbl_3706,asmbl_3708 scaffold_10 - retained_intron 11917146-11917229 asmbl_3707 // Retained and Spliced Intron # retained_intron 12840971-12841059 (orient:-) max_ev_support = 1 # spliced_intron 12840971-12841059 (orient:-) max_ev_support = 2 scaffold_10 - intron 12840971-12841059 asmbl_3734 scaffold_10 - retained_intron 12840971-12841059 asmbl_3735 // Exon Skipping and Retention # skipped_exon 12856613-12857353 (orient:-) max_ev_support = 1 # retained_exon 12856951-12857039 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 12856951-12857039 asmbl_3738 scaffold_10 - intron_skips_exon 12856613-12857353 asmbl_3737 // Exon Skipping and Retention # skipped_exon 12898265-12898915 (orient:-) max_ev_support = 2 # retained_exon 12898797-12898824 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 12898797-12898824 asmbl_3743 scaffold_10 - intron_skips_exon 12898265-12898915 asmbl_3742,asmbl_3745,asmbl_3746 // Retained and Spliced Intron # retained_intron 12895006-12895119 (orient:-) max_ev_support = 1 # spliced_intron 12895006-12895119 (orient:-) max_ev_support = 2 scaffold_10 - intron 12895006-12895119 asmbl_3742,asmbl_3743 scaffold_10 - retained_intron 12895006-12895119 asmbl_3744 // Retained and Spliced Intron # retained_intron 12895228-12895356 (orient:-) max_ev_support = 1 # spliced_intron 12895228-12895356 (orient:-) max_ev_support = 2 scaffold_10 - intron 12895228-12895356 asmbl_3742,asmbl_3743 scaffold_10 - retained_intron 12895228-12895356 asmbl_3744 // Retained and Spliced Intron # retained_intron 13000440-13000630 (orient:-) max_ev_support = 1 # spliced_intron 13000440-13000630 (orient:-) max_ev_support = 3 scaffold_10 - intron 13000440-13000630 asmbl_3749,asmbl_3750 scaffold_10 - retained_intron 13000440-13000630 asmbl_3751 // Retained and Spliced Intron # retained_intron 13282361-13283064 (orient:-) max_ev_support = 6 # spliced_intron 13282361-13283064 (orient:-) max_ev_support = 1 scaffold_10 - intron 13282361-13283064 asmbl_3773 scaffold_10 - retained_intron 13282361-13283064 asmbl_3769 // Exon Skipping and Retention # skipped_exon 13284018-13285767 (orient:-) max_ev_support = 2 # retained_exon 13285342-13285507 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 13285342-13285507 asmbl_3772 scaffold_10 - intron_skips_exon 13284018-13285767 asmbl_3771,asmbl_3775 // Exon Skipping and Retention # skipped_exon 13284018-13285767 (orient:-) max_ev_support = 2 # retained_exon 13285342-13285470 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 13285342-13285470 asmbl_3774 scaffold_10 - intron_skips_exon 13284018-13285767 asmbl_3771,asmbl_3775 // Exon Skipping and Retention # skipped_exon 13285861-13288149 (orient:-) max_ev_support = 2 # retained_exon 13286680-13286774 (orient:-) max_ev_support = 1 scaffold_10 - retained_exons 13286680-13286774 asmbl_3775 scaffold_10 - intron_skips_exon 13285861-13288149 asmbl_3771,asmbl_3772,asmbl_3774 // Retained and Spliced Intron # retained_intron 13458240-13458388 (orient:-) max_ev_support = 2 # spliced_intron 13458240-13458388 (orient:-) max_ev_support = 1 scaffold_10 - intron 13458240-13458388 asmbl_3786 scaffold_10 - retained_intron 13458240-13458388 asmbl_3784 // Retained and Spliced Intron # retained_intron 13458298-13458388 (orient:-) max_ev_support = 2 # spliced_intron 13458298-13458388 (orient:-) max_ev_support = 2 scaffold_10 - intron 13458298-13458388 asmbl_3785 scaffold_10 - retained_intron 13458298-13458388 asmbl_3784 // Retained and Spliced Intron # retained_intron 13471231-13471345 (orient:-) max_ev_support = 3 # spliced_intron 13471231-13471345 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471231-13471345 asmbl_3789,asmbl_3790,asmbl_3792,asmbl_3794 scaffold_10 - retained_intron 13471231-13471345 asmbl_3788,asmbl_3793 // Retained and Spliced Intron # retained_intron 13471381-13471638 (orient:-) max_ev_support = 3 # spliced_intron 13471381-13471638 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471381-13471638 asmbl_3789,asmbl_3790,asmbl_3793,asmbl_3794 scaffold_10 - retained_intron 13471381-13471638 asmbl_3788,asmbl_3792 // Retained and Spliced Intron # retained_intron 13471706-13472424 (orient:-) max_ev_support = 5 # spliced_intron 13471706-13472424 (orient:-) max_ev_support = 2 scaffold_10 - intron 13471706-13472424 asmbl_3790,asmbl_3793 scaffold_10 - retained_intron 13471706-13472424 asmbl_3788,asmbl_3789 // Retained and Spliced Intron # retained_intron 13525424-13525835 (orient:-) max_ev_support = 1 # spliced_intron 13525424-13525835 (orient:-) max_ev_support = 2 scaffold_10 - intron 13525424-13525835 asmbl_3799 scaffold_10 - retained_intron 13525424-13525835 asmbl_3801 // Retained and Spliced Intron # retained_intron 13544278-13544650 (orient:-) max_ev_support = 4 # spliced_intron 13544278-13544650 (orient:-) max_ev_support = 2 scaffold_10 - intron 13544278-13544650 asmbl_3806,asmbl_3809 scaffold_10 - retained_intron 13544278-13544650 asmbl_3807 // Retained and Spliced Intron # retained_intron 13563746-13563878 (orient:-) max_ev_support = 3 # spliced_intron 13563746-13563878 (orient:-) max_ev_support = 2 scaffold_10 - intron 13563746-13563878 asmbl_3813 scaffold_10 - retained_intron 13563746-13563878 asmbl_3812 // Exon Skipping and Retention # skipped_exon 13889774-13890094 (orient:-) max_ev_support = 1 # retained_exon 13889899-13889981 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 13889899-13889981 asmbl_3840 scaffold_10 - intron_skips_exon 13889774-13890094 asmbl_3841 // Exon Skipping and Retention # skipped_exon 13960219-13960633 (orient:-) max_ev_support = 2 # retained_exon 13960447-13960532 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 13960447-13960532 asmbl_3843 scaffold_10 - intron_skips_exon 13960219-13960633 asmbl_3842 // Retained and Spliced Intron # retained_intron 14838682-14838716 (orient:-) max_ev_support = 1 # spliced_intron 14838682-14838716 (orient:-) max_ev_support = 2 scaffold_10 - intron 14838682-14838716 asmbl_3865 scaffold_10 - retained_intron 14838682-14838716 asmbl_3866 // Retained and Spliced Intron # retained_intron 16475794-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475794-16476026 (orient:-) max_ev_support = 2 scaffold_10 - intron 16475794-16476026 asmbl_3907 scaffold_10 - retained_intron 16475794-16476026 asmbl_3908,asmbl_3911 // Retained and Spliced Intron # retained_intron 16475883-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475883-16476026 (orient:-) max_ev_support = 1 scaffold_10 - intron 16475883-16476026 asmbl_3910 scaffold_10 - retained_intron 16475883-16476026 asmbl_3908,asmbl_3911 // Retained and Spliced Intron # retained_intron 16475945-16476026 (orient:-) max_ev_support = 2 # spliced_intron 16475945-16476026 (orient:-) max_ev_support = 1 scaffold_10 - intron 16475945-16476026 asmbl_3909 scaffold_10 - retained_intron 16475945-16476026 asmbl_3908,asmbl_3911 // Retained and Spliced Intron # retained_intron 17090940-17090995 (orient:-) max_ev_support = 1 # spliced_intron 17090940-17090995 (orient:-) max_ev_support = 1 scaffold_10 - intron 17090940-17090995 asmbl_3932 scaffold_10 - retained_intron 17090940-17090995 asmbl_3931 // Exon Skipping and Retention # skipped_exon 17094808-17095396 (orient:-) max_ev_support = 1 # retained_exon 17095062-17095121 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 17095062-17095121 asmbl_3933,asmbl_3935 scaffold_10 - intron_skips_exon 17094808-17095396 asmbl_3934 // Retained and Spliced Intron # retained_intron 17204036-17204220 (orient:-) max_ev_support = 2 # spliced_intron 17204036-17204220 (orient:-) max_ev_support = 2 scaffold_10 - intron 17204036-17204220 asmbl_3942 scaffold_10 - retained_intron 17204036-17204220 asmbl_3941 // Exon Skipping and Retention # skipped_exon 17325221-17326440 (orient:-) max_ev_support = 2 # retained_exon 17325631-17325749 (orient:-) max_ev_support = 2 scaffold_10 - retained_exons 17325631-17325749 asmbl_3952 scaffold_10 - intron_skips_exon 17325221-17326440 asmbl_3953 // Retained and Spliced Intron # retained_intron 17325221-17325630 (orient:-) max_ev_support = 2 # spliced_intron 17325221-17325630 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325221-17325630 asmbl_3952 scaffold_10 - retained_intron 17325221-17325630 asmbl_3954 // Retained and Spliced Intron # retained_intron 17325221-17326440 (orient:-) max_ev_support = 2 # spliced_intron 17325221-17326440 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325221-17326440 asmbl_3953 scaffold_10 - retained_intron 17325221-17326440 asmbl_3954 // Retained and Spliced Intron # retained_intron 17325750-17326440 (orient:-) max_ev_support = 2 # spliced_intron 17325750-17326440 (orient:-) max_ev_support = 2 scaffold_10 - intron 17325750-17326440 asmbl_3952 scaffold_10 - retained_intron 17325750-17326440 asmbl_3954 // Retained and Spliced Intron # retained_intron 4659-4886 (orient:+) max_ev_support = 3 # spliced_intron 4659-4886 (orient:+) max_ev_support = 2 scaffold_10 + intron 4659-4886 asmbl_4127 scaffold_10 + retained_intron 4659-4886 asmbl_4126 // Retained and Spliced Intron # retained_intron 922305-922681 (orient:+) max_ev_support = 1 # spliced_intron 922305-922681 (orient:+) max_ev_support = 3 scaffold_10 + intron 922305-922681 asmbl_4159,asmbl_4162 scaffold_10 + retained_intron 922305-922681 asmbl_4163 // Exon Skipping and Retention # skipped_exon 948696-949038 (orient:+) max_ev_support = 3 # retained_exon 948871-948926 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 948871-948926 asmbl_4172 scaffold_10 + intron_skips_exon 948696-949038 asmbl_4173,asmbl_4174 // Exon Skipping and Retention # skipped_exon 1112389-1112874 (orient:+) max_ev_support = 3 # retained_exon 1112659-1112772 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 1112659-1112772 asmbl_4185 scaffold_10 + intron_skips_exon 1112389-1112874 asmbl_4184 // Exon Skipping and Retention # skipped_exon 1174340-1176264 (orient:+) max_ev_support = 2 # retained_exon 1175351-1175397 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 1175351-1175397 asmbl_4196 scaffold_10 + intron_skips_exon 1174340-1176264 asmbl_4197 // Exon Skipping and Retention # skipped_exon 1290276-1292230 (orient:+) max_ev_support = 1 # retained_exon 1292095-1292163 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 1292095-1292163 asmbl_4205 scaffold_10 + intron_skips_exon 1290276-1292230 asmbl_4208 // Exon Skipping and Retention # skipped_exon 1292164-1295040 (orient:+) max_ev_support = 2 # retained_exon 1292231-1292299 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 1292231-1292299 asmbl_4208 scaffold_10 + intron_skips_exon 1292164-1295040 asmbl_4205 // Retained and Spliced Intron # retained_intron 1425809-1425931 (orient:+) max_ev_support = 2 # spliced_intron 1425809-1425931 (orient:+) max_ev_support = 1 scaffold_10 + intron 1425809-1425931 asmbl_4222 scaffold_10 + retained_intron 1425809-1425931 asmbl_4215,asmbl_4217,asmbl_4219,asmbl_4220 // Retained and Spliced Intron # retained_intron 1425641-1425720 (orient:+) max_ev_support = 2 # spliced_intron 1425641-1425720 (orient:+) max_ev_support = 2 scaffold_10 + intron 1425641-1425720 asmbl_4215,asmbl_4220,asmbl_4222 scaffold_10 + retained_intron 1425641-1425720 asmbl_4216,asmbl_4217,asmbl_4219 // Retained and Spliced Intron # retained_intron 1424584-1425202 (orient:+) max_ev_support = 2 # spliced_intron 1424584-1425202 (orient:+) max_ev_support = 3 scaffold_10 + intron 1424584-1425202 asmbl_4214,asmbl_4215,asmbl_4216 scaffold_10 + retained_intron 1424584-1425202 asmbl_4217,asmbl_4218,asmbl_4219,asmbl_4220,asmbl_4221,asmbl_4222 // Retained and Spliced Intron # retained_intron 1425641-1425931 (orient:+) max_ev_support = 2 # spliced_intron 1425641-1425931 (orient:+) max_ev_support = 3 scaffold_10 + intron 1425641-1425931 asmbl_4214,asmbl_4218,asmbl_4221 scaffold_10 + retained_intron 1425641-1425931 asmbl_4217,asmbl_4219 // Retained and Spliced Intron # retained_intron 1425275-1425575 (orient:+) max_ev_support = 2 # spliced_intron 1425275-1425575 (orient:+) max_ev_support = 3 scaffold_10 + intron 1425275-1425575 asmbl_4214,asmbl_4215,asmbl_4216,asmbl_4217,asmbl_4220,asmbl_4221,asmbl_4222 scaffold_10 + retained_intron 1425275-1425575 asmbl_4218,asmbl_4219 // Exon Skipping and Retention # skipped_exon 1425641-1425931 (orient:+) max_ev_support = 3 # retained_exon 1425721-1425808 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 1425721-1425808 asmbl_4222 scaffold_10 + intron_skips_exon 1425641-1425931 asmbl_4214,asmbl_4218,asmbl_4221 // Retained and Spliced Intron # retained_intron 1794196-1794683 (orient:+) max_ev_support = 2 # spliced_intron 1794196-1794683 (orient:+) max_ev_support = 1 scaffold_10 + intron 1794196-1794683 asmbl_4241 scaffold_10 + retained_intron 1794196-1794683 asmbl_4240 // Retained and Spliced Intron # retained_intron 2668615-2668805 (orient:+) max_ev_support = 1 # spliced_intron 2668615-2668805 (orient:+) max_ev_support = 2 scaffold_10 + intron 2668615-2668805 asmbl_4266 scaffold_10 + retained_intron 2668615-2668805 asmbl_4267 // Retained and Spliced Intron # retained_intron 2668937-2669198 (orient:+) max_ev_support = 1 # spliced_intron 2668937-2669198 (orient:+) max_ev_support = 2 scaffold_10 + intron 2668937-2669198 asmbl_4266 scaffold_10 + retained_intron 2668937-2669198 asmbl_4267 // Retained and Spliced Intron # retained_intron 2669269-2669443 (orient:+) max_ev_support = 1 # spliced_intron 2669269-2669443 (orient:+) max_ev_support = 2 scaffold_10 + intron 2669269-2669443 asmbl_4266 scaffold_10 + retained_intron 2669269-2669443 asmbl_4267 // Retained and Spliced Intron # retained_intron 2675286-2675371 (orient:+) max_ev_support = 2 # spliced_intron 2675286-2675371 (orient:+) max_ev_support = 1 scaffold_10 + intron 2675286-2675371 asmbl_4272 scaffold_10 + retained_intron 2675286-2675371 asmbl_4270,asmbl_4271 // Exon Skipping and Retention # skipped_exon 2675455-2675702 (orient:+) max_ev_support = 1 # retained_exon 2675550-2675608 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 2675550-2675608 asmbl_4270,asmbl_4272 scaffold_10 + intron_skips_exon 2675455-2675702 asmbl_4271 // Retained and Spliced Intron # retained_intron 2752450-2753447 (orient:+) max_ev_support = 2 # spliced_intron 2752450-2753447 (orient:+) max_ev_support = 1 scaffold_10 + intron 2752450-2753447 asmbl_4286 scaffold_10 + retained_intron 2752450-2753447 asmbl_4285,asmbl_4287 // Retained and Spliced Intron # retained_intron 3039893-3040106 (orient:+) max_ev_support = 1 # spliced_intron 3039893-3040106 (orient:+) max_ev_support = 3 scaffold_10 + intron 3039893-3040106 asmbl_4299,asmbl_4300 scaffold_10 + retained_intron 3039893-3040106 asmbl_4301 // Retained and Spliced Intron # retained_intron 3078017-3078168 (orient:+) max_ev_support = 1 # spliced_intron 3078017-3078168 (orient:+) max_ev_support = 2 scaffold_10 + intron 3078017-3078168 asmbl_4304 scaffold_10 + retained_intron 3078017-3078168 asmbl_4305 // Retained and Spliced Intron # retained_intron 3159617-3159862 (orient:+) max_ev_support = 2 # spliced_intron 3159617-3159862 (orient:+) max_ev_support = 2 scaffold_10 + intron 3159617-3159862 asmbl_4308,asmbl_4310 scaffold_10 + retained_intron 3159617-3159862 asmbl_4309 // Exon Skipping and Retention # skipped_exon 3384603-3386115 (orient:+) max_ev_support = 3 # retained_exon 3385409-3385600 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 3385409-3385600 asmbl_4314 scaffold_10 + intron_skips_exon 3384603-3386115 asmbl_4315 // Retained and Spliced Intron # retained_intron 3426012-3426415 (orient:+) max_ev_support = 1 # spliced_intron 3426012-3426415 (orient:+) max_ev_support = 2 scaffold_10 + intron 3426012-3426415 asmbl_4319 scaffold_10 + retained_intron 3426012-3426415 asmbl_4322 // Retained and Spliced Intron # retained_intron 3510475-3510584 (orient:+) max_ev_support = 4 # spliced_intron 3510475-3510584 (orient:+) max_ev_support = 1 scaffold_10 + intron 3510475-3510584 asmbl_4331 scaffold_10 + retained_intron 3510475-3510584 asmbl_4330 // Retained and Spliced Intron # retained_intron 3510530-3510584 (orient:+) max_ev_support = 4 # spliced_intron 3510530-3510584 (orient:+) max_ev_support = 1 scaffold_10 + intron 3510530-3510584 asmbl_4332 scaffold_10 + retained_intron 3510530-3510584 asmbl_4330 // Retained and Spliced Intron # retained_intron 3714042-3714121 (orient:+) max_ev_support = 2 # spliced_intron 3714042-3714121 (orient:+) max_ev_support = 1 scaffold_10 + intron 3714042-3714121 asmbl_4342 scaffold_10 + retained_intron 3714042-3714121 asmbl_4340,asmbl_4341 // Retained and Spliced Intron # retained_intron 3732814-3732994 (orient:+) max_ev_support = 2 # spliced_intron 3732814-3732994 (orient:+) max_ev_support = 2 scaffold_10 + intron 3732814-3732994 asmbl_4345 scaffold_10 + retained_intron 3732814-3732994 asmbl_4346,asmbl_4347 // Retained and Spliced Intron # retained_intron 3732047-3732294 (orient:+) max_ev_support = 1 # spliced_intron 3732047-3732294 (orient:+) max_ev_support = 2 scaffold_10 + intron 3732047-3732294 asmbl_4345,asmbl_4346 scaffold_10 + retained_intron 3732047-3732294 asmbl_4347 // Retained and Spliced Intron # retained_intron 3732605-3732726 (orient:+) max_ev_support = 1 # spliced_intron 3732605-3732726 (orient:+) max_ev_support = 2 scaffold_10 + intron 3732605-3732726 asmbl_4345,asmbl_4346 scaffold_10 + retained_intron 3732605-3732726 asmbl_4347 // Exon Skipping and Retention # skipped_exon 4049797-4051046 (orient:+) max_ev_support = 1 # retained_exon 4049896-4050689 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 4049896-4049951,4050047-4050174,4050326-4050449,4050562-4050689 asmbl_4381 scaffold_10 + intron_skips_exon 4049797-4051046 asmbl_4382 // Exon Skipping and Retention # skipped_exon 5177142-5178792 (orient:+) max_ev_support = 1 # retained_exon 5178322-5178379 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 5178322-5178379 asmbl_4427,asmbl_4432 scaffold_10 + intron_skips_exon 5177142-5178792 asmbl_4426,asmbl_4428 // Exon Skipping and Retention # skipped_exon 5174275-5176857 (orient:+) max_ev_support = 2 # retained_exon 5175651-5175802 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 5175651-5175802 asmbl_4428 scaffold_10 + intron_skips_exon 5174275-5176857 asmbl_4426,asmbl_4427,asmbl_4432 // Retained and Spliced Intron # retained_intron 5390028-5390517 (orient:+) max_ev_support = 2 # spliced_intron 5390028-5390517 (orient:+) max_ev_support = 1 scaffold_10 + intron 5390028-5390517 asmbl_4446,asmbl_4447 scaffold_10 + retained_intron 5390028-5390517 asmbl_4445 // Retained and Spliced Intron # retained_intron 5390028-5390782 (orient:+) max_ev_support = 2 # spliced_intron 5390028-5390782 (orient:+) max_ev_support = 2 scaffold_10 + intron 5390028-5390782 asmbl_4444 scaffold_10 + retained_intron 5390028-5390782 asmbl_4445 // Retained and Spliced Intron # retained_intron 5390545-5390782 (orient:+) max_ev_support = 2 # spliced_intron 5390545-5390782 (orient:+) max_ev_support = 1 scaffold_10 + intron 5390545-5390782 asmbl_4447 scaffold_10 + retained_intron 5390545-5390782 asmbl_4445,asmbl_4446 // Exon Skipping and Retention # skipped_exon 5390028-5390782 (orient:+) max_ev_support = 2 # retained_exon 5390518-5390544 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 5390518-5390544 asmbl_4447 scaffold_10 + intron_skips_exon 5390028-5390782 asmbl_4444 // Retained and Spliced Intron # retained_intron 5495263-5495288 (orient:+) max_ev_support = 1 # spliced_intron 5495263-5495288 (orient:+) max_ev_support = 2 scaffold_10 + intron 5495263-5495288 asmbl_4454 scaffold_10 + retained_intron 5495263-5495288 asmbl_4455 // Retained and Spliced Intron # retained_intron 5536926-5537113 (orient:+) max_ev_support = 2 # spliced_intron 5536926-5537113 (orient:+) max_ev_support = 2 scaffold_10 + intron 5536926-5537113 asmbl_4462 scaffold_10 + retained_intron 5536926-5537113 asmbl_4461 // Retained and Spliced Intron # retained_intron 5687106-5687347 (orient:+) max_ev_support = 2 # spliced_intron 5687106-5687347 (orient:+) max_ev_support = 2 scaffold_10 + intron 5687106-5687347 asmbl_4471,asmbl_4472 scaffold_10 + retained_intron 5687106-5687347 asmbl_4470 // Retained and Spliced Intron # retained_intron 5687438-5687977 (orient:+) max_ev_support = 2 # spliced_intron 5687438-5687977 (orient:+) max_ev_support = 2 scaffold_10 + intron 5687438-5687977 asmbl_4471 scaffold_10 + retained_intron 5687438-5687977 asmbl_4470,asmbl_4472 // Retained and Spliced Intron # retained_intron 5823736-5824113 (orient:+) max_ev_support = 2 # spliced_intron 5823736-5824113 (orient:+) max_ev_support = 3 scaffold_10 + intron 5823736-5824113 asmbl_4487 scaffold_10 + retained_intron 5823736-5824113 asmbl_4488 // Retained and Spliced Intron # retained_intron 5823736-5824133 (orient:+) max_ev_support = 2 # spliced_intron 5823736-5824133 (orient:+) max_ev_support = 3 scaffold_10 + intron 5823736-5824133 asmbl_4486 scaffold_10 + retained_intron 5823736-5824133 asmbl_4488 // Exon Skipping and Retention # skipped_exon 6052141-6054671 (orient:+) max_ev_support = 3 # retained_exon 6052478-6052558 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 6052478-6052558 asmbl_4500,asmbl_4508,asmbl_4511 scaffold_10 + intron_skips_exon 6052141-6054671 asmbl_4501 // Retained and Spliced Intron # retained_intron 6064811-6065209 (orient:+) max_ev_support = 3 # spliced_intron 6064811-6065209 (orient:+) max_ev_support = 1 scaffold_10 + intron 6064811-6065209 asmbl_4511 scaffold_10 + retained_intron 6064811-6065209 asmbl_4500,asmbl_4501,asmbl_4502,asmbl_4503,asmbl_4508,asmbl_4509,asmbl_4510 // Retained and Spliced Intron # retained_intron 6065331-6066224 (orient:+) max_ev_support = 5 # spliced_intron 6065331-6066224 (orient:+) max_ev_support = 2 scaffold_10 + intron 6065331-6066224 asmbl_4508,asmbl_4509,asmbl_4510,asmbl_4511 scaffold_10 + retained_intron 6065331-6066224 asmbl_4500,asmbl_4501,asmbl_4502,asmbl_4503 // Exon Skipping and Retention # skipped_exon 7270639-7271459 (orient:+) max_ev_support = 2 # retained_exon 7270930-7270986 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 7270930-7270986 asmbl_4551,asmbl_4552,asmbl_4553 scaffold_10 + intron_skips_exon 7270639-7271459 asmbl_4550 // Retained and Spliced Intron # retained_intron 7276486-7276839 (orient:+) max_ev_support = 1 # spliced_intron 7276486-7276839 (orient:+) max_ev_support = 2 scaffold_10 + intron 7276486-7276839 asmbl_4550,asmbl_4551,asmbl_4555,asmbl_4556 scaffold_10 + retained_intron 7276486-7276839 asmbl_4553,asmbl_4554 // Exon Skipping and Retention # skipped_exon 7502183-7505111 (orient:+) max_ev_support = 1 # retained_exon 7504235-7504270 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 7504235-7504270 asmbl_4559 scaffold_10 + intron_skips_exon 7502183-7505111 asmbl_4560 // Retained and Spliced Intron # retained_intron 7672393-7672816 (orient:+) max_ev_support = 1 # spliced_intron 7672393-7672816 (orient:+) max_ev_support = 1 scaffold_10 + intron 7672393-7672816 asmbl_4574 scaffold_10 + retained_intron 7672393-7672816 asmbl_4573 // Retained and Spliced Intron # retained_intron 7672393-7673371 (orient:+) max_ev_support = 3 # spliced_intron 7672393-7673371 (orient:+) max_ev_support = 1 scaffold_10 + intron 7672393-7673371 asmbl_4575 scaffold_10 + retained_intron 7672393-7673371 asmbl_4573 // Retained and Spliced Intron # retained_intron 7684017-7685179 (orient:+) max_ev_support = 2 # spliced_intron 7684017-7685179 (orient:+) max_ev_support = 1 scaffold_10 + intron 7684017-7685179 asmbl_4579 scaffold_10 + retained_intron 7684017-7685179 asmbl_4578 // Retained and Spliced Intron # retained_intron 7684958-7685179 (orient:+) max_ev_support = 2 # spliced_intron 7684958-7685179 (orient:+) max_ev_support = 2 scaffold_10 + intron 7684958-7685179 asmbl_4577 scaffold_10 + retained_intron 7684958-7685179 asmbl_4578 // Retained and Spliced Intron # retained_intron 7685649-7686027 (orient:+) max_ev_support = 2 # spliced_intron 7685649-7686027 (orient:+) max_ev_support = 2 scaffold_10 + intron 7685649-7686027 asmbl_4577 scaffold_10 + retained_intron 7685649-7686027 asmbl_4578,asmbl_4579 // Retained and Spliced Intron # retained_intron 8346979-8347182 (orient:+) max_ev_support = 2 # spliced_intron 8346979-8347182 (orient:+) max_ev_support = 1 scaffold_10 + intron 8346979-8347182 asmbl_4595 scaffold_10 + retained_intron 8346979-8347182 asmbl_4594 // Retained and Spliced Intron # retained_intron 8908482-8908686 (orient:+) max_ev_support = 2 # spliced_intron 8908482-8908686 (orient:+) max_ev_support = 1 scaffold_10 + intron 8908482-8908686 asmbl_4616 scaffold_10 + retained_intron 8908482-8908686 asmbl_4614 // Retained and Spliced Intron # retained_intron 8917449-8918183 (orient:+) max_ev_support = 2 # spliced_intron 8917449-8918183 (orient:+) max_ev_support = 2 scaffold_10 + intron 8917449-8918183 asmbl_4617 scaffold_10 + retained_intron 8917449-8918183 asmbl_4618,asmbl_4619 // Retained and Spliced Intron # retained_intron 8917894-8918183 (orient:+) max_ev_support = 2 # spliced_intron 8917894-8918183 (orient:+) max_ev_support = 1 scaffold_10 + intron 8917894-8918183 asmbl_4620 scaffold_10 + retained_intron 8917894-8918183 asmbl_4618,asmbl_4619 // Retained and Spliced Intron # retained_intron 8916906-8917220 (orient:+) max_ev_support = 1 # spliced_intron 8916906-8917220 (orient:+) max_ev_support = 2 scaffold_10 + intron 8916906-8917220 asmbl_4617,asmbl_4618,asmbl_4620 scaffold_10 + retained_intron 8916906-8917220 asmbl_4619 // Retained and Spliced Intron # retained_intron 8952261-8952966 (orient:+) max_ev_support = 1 # spliced_intron 8952261-8952966 (orient:+) max_ev_support = 3 scaffold_10 + intron 8952261-8952966 asmbl_4624 scaffold_10 + retained_intron 8952261-8952966 asmbl_4625 // Exon Skipping and Retention # skipped_exon 9003426-9004229 (orient:+) max_ev_support = 1 # retained_exon 9003657-9003692 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 9003657-9003692 asmbl_4628,asmbl_4629 scaffold_10 + intron_skips_exon 9003426-9004229 asmbl_4630 // Exon Skipping and Retention # skipped_exon 9003426-9004232 (orient:+) max_ev_support = 1 # retained_exon 9003657-9003692 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 9003657-9003692 asmbl_4628,asmbl_4629 scaffold_10 + intron_skips_exon 9003426-9004232 asmbl_4631 // Retained and Spliced Intron # retained_intron 9041054-9041325 (orient:+) max_ev_support = 2 # spliced_intron 9041054-9041325 (orient:+) max_ev_support = 2 scaffold_10 + intron 9041054-9041325 asmbl_4636,asmbl_4637 scaffold_10 + retained_intron 9041054-9041325 asmbl_4635 // Retained and Spliced Intron # retained_intron 9041499-9041894 (orient:+) max_ev_support = 2 # spliced_intron 9041499-9041894 (orient:+) max_ev_support = 2 scaffold_10 + intron 9041499-9041894 asmbl_4637 scaffold_10 + retained_intron 9041499-9041894 asmbl_4635,asmbl_4636 // Retained and Spliced Intron # retained_intron 9042003-9042107 (orient:+) max_ev_support = 2 # spliced_intron 9042003-9042107 (orient:+) max_ev_support = 2 scaffold_10 + intron 9042003-9042107 asmbl_4637 scaffold_10 + retained_intron 9042003-9042107 asmbl_4635,asmbl_4636 // Retained and Spliced Intron # retained_intron 9071539-9071698 (orient:+) max_ev_support = 2 # spliced_intron 9071539-9071698 (orient:+) max_ev_support = 2 scaffold_10 + intron 9071539-9071698 asmbl_4638,asmbl_4642,asmbl_4643 scaffold_10 + retained_intron 9071539-9071698 asmbl_4639 // Retained and Spliced Intron # retained_intron 9074945-9075599 (orient:+) max_ev_support = 2 # spliced_intron 9074945-9075599 (orient:+) max_ev_support = 1 scaffold_10 + intron 9074945-9075599 asmbl_4642 scaffold_10 + retained_intron 9074945-9075599 asmbl_4641,asmbl_4643 // Exon Skipping and Retention # skipped_exon 9360859-9363246 (orient:+) max_ev_support = 1 # retained_exon 9361726-9363040 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 9361726-9361856,9362058-9362174,9362325-9362443,9362590-9362739,9362869-9363040 asmbl_4650 scaffold_10 + intron_skips_exon 9360859-9363246 asmbl_4649 // Retained and Spliced Intron # retained_intron 9546459-9546855 (orient:+) max_ev_support = 2 # spliced_intron 9546459-9546855 (orient:+) max_ev_support = 1 scaffold_10 + intron 9546459-9546855 asmbl_4675 scaffold_10 + retained_intron 9546459-9546855 asmbl_4677 // Exon Skipping and Retention # skipped_exon 9552657-9554812 (orient:+) max_ev_support = 2 # retained_exon 9554352-9554426 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 9554352-9554426 asmbl_4680,asmbl_4682 scaffold_10 + intron_skips_exon 9552657-9554812 asmbl_4676,asmbl_4681 // Retained and Spliced Intron # retained_intron 9555421-9557098 (orient:+) max_ev_support = 1 # spliced_intron 9555421-9557098 (orient:+) max_ev_support = 2 scaffold_10 + intron 9555421-9557098 asmbl_4676,asmbl_4681 scaffold_10 + retained_intron 9555421-9557098 asmbl_4682 // Retained and Spliced Intron # retained_intron 9555581-9557098 (orient:+) max_ev_support = 1 # spliced_intron 9555581-9557098 (orient:+) max_ev_support = 1 scaffold_10 + intron 9555581-9557098 asmbl_4680 scaffold_10 + retained_intron 9555581-9557098 asmbl_4682 // Retained and Spliced Intron # retained_intron 10273218-10273385 (orient:+) max_ev_support = 1 # spliced_intron 10273218-10273385 (orient:+) max_ev_support = 1 scaffold_10 + intron 10273218-10273385 asmbl_4688 scaffold_10 + retained_intron 10273218-10273385 asmbl_4689 // Retained and Spliced Intron # retained_intron 10801165-10801378 (orient:+) max_ev_support = 1 # spliced_intron 10801165-10801378 (orient:+) max_ev_support = 3 scaffold_10 + intron 10801165-10801378 asmbl_4713,asmbl_4716 scaffold_10 + retained_intron 10801165-10801378 asmbl_4714 // Retained and Spliced Intron # retained_intron 11093689-11093875 (orient:+) max_ev_support = 3 # spliced_intron 11093689-11093875 (orient:+) max_ev_support = 3 scaffold_10 + intron 11093689-11093875 asmbl_4723 scaffold_10 + retained_intron 11093689-11093875 asmbl_4724 // Retained and Spliced Intron # retained_intron 11486695-11488591 (orient:+) max_ev_support = 3 # spliced_intron 11486695-11488591 (orient:+) max_ev_support = 1 scaffold_10 + intron 11486695-11488591 asmbl_4738 scaffold_10 + retained_intron 11486695-11488591 asmbl_4737 // Exon Skipping and Retention # skipped_exon 11601926-11602458 (orient:+) max_ev_support = 1 # retained_exon 11602116-11602229 (orient:+) max_ev_support = 3 scaffold_10 + retained_exons 11602116-11602229 asmbl_4749,asmbl_4750,asmbl_4751,asmbl_4758 scaffold_10 + intron_skips_exon 11601926-11602458 asmbl_4760 // Exon Skipping and Retention # skipped_exon 11595100-11596812 (orient:+) max_ev_support = 1 # retained_exon 11596017-11596274 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 11596017-11596274 asmbl_4750 scaffold_10 + intron_skips_exon 11595100-11596812 asmbl_4751 // Retained and Spliced Intron # retained_intron 11601926-11602115 (orient:+) max_ev_support = 1 # spliced_intron 11601926-11602115 (orient:+) max_ev_support = 3 scaffold_10 + intron 11601926-11602115 asmbl_4749,asmbl_4750,asmbl_4751,asmbl_4758 scaffold_10 + retained_intron 11601926-11602115 asmbl_4752 // Retained and Spliced Intron # retained_intron 11907708-11908477 (orient:+) max_ev_support = 2 # spliced_intron 11907708-11908477 (orient:+) max_ev_support = 3 scaffold_10 + intron 11907708-11908477 asmbl_4776,asmbl_4778 scaffold_10 + retained_intron 11907708-11908477 asmbl_4777,asmbl_4779,asmbl_4780 // Retained and Spliced Intron # retained_intron 11908965-11909113 (orient:+) max_ev_support = 2 # spliced_intron 11908965-11909113 (orient:+) max_ev_support = 3 scaffold_10 + intron 11908965-11909113 asmbl_4776,asmbl_4780 scaffold_10 + retained_intron 11908965-11909113 asmbl_4777,asmbl_4778,asmbl_4779 // Retained and Spliced Intron # retained_intron 11909255-11909403 (orient:+) max_ev_support = 2 # spliced_intron 11909255-11909403 (orient:+) max_ev_support = 3 scaffold_10 + intron 11909255-11909403 asmbl_4776,asmbl_4779,asmbl_4780 scaffold_10 + retained_intron 11909255-11909403 asmbl_4777,asmbl_4778 // Exon Skipping and Retention # skipped_exon 11970189-11971545 (orient:+) max_ev_support = 1 # retained_exon 11970269-11971084 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 11970269-11970419,11970502-11970636,11970893-11971084 asmbl_4782 scaffold_10 + intron_skips_exon 11970189-11971545 asmbl_4783 // Retained and Spliced Intron # retained_intron 11968331-11968370 (orient:+) max_ev_support = 2 # spliced_intron 11968331-11968370 (orient:+) max_ev_support = 1 scaffold_10 + intron 11968331-11968370 asmbl_4793 scaffold_10 + retained_intron 11968331-11968370 asmbl_4786 // Retained and Spliced Intron # retained_intron 11971085-11971272 (orient:+) max_ev_support = 2 # spliced_intron 11971085-11971272 (orient:+) max_ev_support = 2 scaffold_10 + intron 11971085-11971272 asmbl_4782,asmbl_4791,asmbl_4792,asmbl_4794 scaffold_10 + retained_intron 11971085-11971272 asmbl_4790 // Retained and Spliced Intron # retained_intron 11970420-11970501 (orient:+) max_ev_support = 1 # spliced_intron 11970420-11970501 (orient:+) max_ev_support = 2 scaffold_10 + intron 11970420-11970501 asmbl_4782,asmbl_4790,asmbl_4791 scaffold_10 + retained_intron 11970420-11970501 asmbl_4792,asmbl_4794 // Retained and Spliced Intron # retained_intron 12053237-12053342 (orient:+) max_ev_support = 2 # spliced_intron 12053237-12053342 (orient:+) max_ev_support = 2 scaffold_10 + intron 12053237-12053342 asmbl_4798 scaffold_10 + retained_intron 12053237-12053342 asmbl_4797,asmbl_4799 // Retained and Spliced Intron # retained_intron 12069498-12070132 (orient:+) max_ev_support = 2 # spliced_intron 12069498-12070132 (orient:+) max_ev_support = 2 scaffold_10 + intron 12069498-12070132 asmbl_4800 scaffold_10 + retained_intron 12069498-12070132 asmbl_4801 // Retained and Spliced Intron # retained_intron 12679575-12679670 (orient:+) max_ev_support = 2 # spliced_intron 12679575-12679670 (orient:+) max_ev_support = 2 scaffold_10 + intron 12679575-12679670 asmbl_4811 scaffold_10 + retained_intron 12679575-12679670 asmbl_4810 // Retained and Spliced Intron # retained_intron 12726885-12726904 (orient:+) max_ev_support = 1 # spliced_intron 12726885-12726904 (orient:+) max_ev_support = 1 scaffold_10 + intron 12726885-12726904 asmbl_4813 scaffold_10 + retained_intron 12726885-12726904 asmbl_4812 // Exon Skipping and Retention # skipped_exon 12818068-12819821 (orient:+) max_ev_support = 1 # retained_exon 12818218-12819520 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 12818218-12818329,12819332-12819520 asmbl_4819,asmbl_4821 scaffold_10 + intron_skips_exon 12818068-12819821 asmbl_4820 // Retained and Spliced Intron # retained_intron 12946554-12946681 (orient:+) max_ev_support = 2 # spliced_intron 12946554-12946681 (orient:+) max_ev_support = 3 scaffold_10 + intron 12946554-12946681 asmbl_4832 scaffold_10 + retained_intron 12946554-12946681 asmbl_4833 // Retained and Spliced Intron # retained_intron 13002218-13002487 (orient:+) max_ev_support = 2 # spliced_intron 13002218-13002487 (orient:+) max_ev_support = 2 scaffold_10 + intron 13002218-13002487 asmbl_4844 scaffold_10 + retained_intron 13002218-13002487 asmbl_4843 // Exon Skipping and Retention # skipped_exon 13002218-13002734 (orient:+) max_ev_support = 2 # retained_exon 13002488-13002626 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 13002488-13002626 asmbl_4844 scaffold_10 + intron_skips_exon 13002218-13002734 asmbl_4845 // Retained and Spliced Intron # retained_intron 13280730-13280885 (orient:+) max_ev_support = 2 # spliced_intron 13280730-13280885 (orient:+) max_ev_support = 1 scaffold_10 + intron 13280730-13280885 asmbl_4862 scaffold_10 + retained_intron 13280730-13280885 asmbl_4860,asmbl_4861 // Retained and Spliced Intron # retained_intron 13279609-13280597 (orient:+) max_ev_support = 2 # spliced_intron 13279609-13280597 (orient:+) max_ev_support = 2 scaffold_10 + intron 13279609-13280597 asmbl_4860 scaffold_10 + retained_intron 13279609-13280597 asmbl_4861 // Retained and Spliced Intron # retained_intron 13300842-13301043 (orient:+) max_ev_support = 1 # spliced_intron 13300842-13301043 (orient:+) max_ev_support = 2 scaffold_10 + intron 13300842-13301043 asmbl_4863,asmbl_4865 scaffold_10 + retained_intron 13300842-13301043 asmbl_4864 // Retained and Spliced Intron # retained_intron 13300486-13300597 (orient:+) max_ev_support = 1 # spliced_intron 13300486-13300597 (orient:+) max_ev_support = 2 scaffold_10 + intron 13300486-13300597 asmbl_4863,asmbl_4864 scaffold_10 + retained_intron 13300486-13300597 asmbl_4865 // Retained and Spliced Intron # retained_intron 13521752-13521830 (orient:+) max_ev_support = 3 # spliced_intron 13521752-13521830 (orient:+) max_ev_support = 2 scaffold_10 + intron 13521752-13521830 asmbl_4883 scaffold_10 + retained_intron 13521752-13521830 asmbl_4882 // Retained and Spliced Intron # retained_intron 13767257-13767588 (orient:+) max_ev_support = 2 # spliced_intron 13767257-13767588 (orient:+) max_ev_support = 3 scaffold_10 + intron 13767257-13767588 asmbl_4887 scaffold_10 + retained_intron 13767257-13767588 asmbl_4888 // Retained and Spliced Intron # retained_intron 13789012-13789048 (orient:+) max_ev_support = 1 # spliced_intron 13789012-13789048 (orient:+) max_ev_support = 1 scaffold_10 + intron 13789012-13789048 asmbl_4891 scaffold_10 + retained_intron 13789012-13789048 asmbl_4890 // Retained and Spliced Intron # retained_intron 13787525-13787965 (orient:+) max_ev_support = 1 # spliced_intron 13787525-13787965 (orient:+) max_ev_support = 1 scaffold_10 + intron 13787525-13787965 asmbl_4890 scaffold_10 + retained_intron 13787525-13787965 asmbl_4895 // Exon Skipping and Retention # skipped_exon 13914729-13915905 (orient:+) max_ev_support = 1 # retained_exon 13914936-13915154 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 13914936-13915154 asmbl_4901 scaffold_10 + intron_skips_exon 13914729-13915905 asmbl_4902 // Retained and Spliced Intron # retained_intron 13919739-13919961 (orient:+) max_ev_support = 1 # spliced_intron 13919739-13919961 (orient:+) max_ev_support = 2 scaffold_10 + intron 13919739-13919961 asmbl_4904 scaffold_10 + retained_intron 13919739-13919961 asmbl_4905 // Retained and Spliced Intron # retained_intron 14680476-14680668 (orient:+) max_ev_support = 5 # spliced_intron 14680476-14680668 (orient:+) max_ev_support = 2 scaffold_10 + intron 14680476-14680668 asmbl_4918 scaffold_10 + retained_intron 14680476-14680668 asmbl_4917 // Exon Skipping and Retention # skipped_exon 16257718-16258476 (orient:+) max_ev_support = 1 # retained_exon 16257932-16258017 (orient:+) max_ev_support = 2 scaffold_10 + retained_exons 16257932-16258017 asmbl_4981,asmbl_4982 scaffold_10 + intron_skips_exon 16257718-16258476 asmbl_4983,asmbl_4984 // Exon Skipping and Retention # skipped_exon 16258018-16259449 (orient:+) max_ev_support = 2 # retained_exon 16258477-16258562 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16258477-16258562 asmbl_4983,asmbl_4984 scaffold_10 + intron_skips_exon 16258018-16259449 asmbl_4981,asmbl_4982 // Retained and Spliced Intron # retained_intron 16531561-16531803 (orient:+) max_ev_support = 1 # spliced_intron 16531561-16531803 (orient:+) max_ev_support = 2 scaffold_10 + intron 16531561-16531803 asmbl_4992,asmbl_4994 scaffold_10 + retained_intron 16531561-16531803 asmbl_4995,asmbl_4997 // Exon Skipping and Retention # skipped_exon 16821281-16823004 (orient:+) max_ev_support = 1 # retained_exon 16822208-16822303 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16822208-16822303 asmbl_5000 scaffold_10 + intron_skips_exon 16821281-16823004 asmbl_5001 // Exon Skipping and Retention # skipped_exon 16822304-16824535 (orient:+) max_ev_support = 1 # retained_exon 16823005-16823100 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 16823005-16823100 asmbl_5001 scaffold_10 + intron_skips_exon 16822304-16824535 asmbl_5000 // Retained and Spliced Intron # retained_intron 17328288-17328429 (orient:+) max_ev_support = 1 # spliced_intron 17328288-17328429 (orient:+) max_ev_support = 1 scaffold_10 + intron 17328288-17328429 asmbl_5039 scaffold_10 + retained_intron 17328288-17328429 asmbl_5038 // Exon Skipping and Retention # skipped_exon 17394143-17395941 (orient:+) max_ev_support = 1 # retained_exon 17395184-17395229 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17395184-17395229 asmbl_5048,asmbl_5049 scaffold_10 + intron_skips_exon 17394143-17395941 asmbl_5047 // Exon Skipping and Retention # skipped_exon 17683194-17684814 (orient:+) max_ev_support = 1 # retained_exon 17684425-17684546 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17684425-17684546 asmbl_5062 scaffold_10 + intron_skips_exon 17683194-17684814 asmbl_5063 // Exon Skipping and Retention # skipped_exon 17682892-17684424 (orient:+) max_ev_support = 1 # retained_exon 17683072-17683193 (orient:+) max_ev_support = 1 scaffold_10 + retained_exons 17683072-17683193 asmbl_5063 scaffold_10 + intron_skips_exon 17682892-17684424 asmbl_5062 // Retained and Spliced Intron # retained_intron 2773-2913 (orient:+) max_ev_support = 4 # spliced_intron 2773-2913 (orient:+) max_ev_support = 1 scaffold_1097 + intron 2773-2913 asmbl_5204 scaffold_1097 + retained_intron 2773-2913 asmbl_5201,asmbl_5202 // Retained and Spliced Intron # retained_intron 38298-38788 (orient:+) max_ev_support = 3 # spliced_intron 38298-38788 (orient:+) max_ev_support = 1 scaffold_11 + intron 38298-38788 asmbl_5211 scaffold_11 + retained_intron 38298-38788 asmbl_5210 // Retained and Spliced Intron # retained_intron 170652-170917 (orient:+) max_ev_support = 1 # spliced_intron 170652-170917 (orient:+) max_ev_support = 1 scaffold_11 + intron 170652-170917 asmbl_5217 scaffold_11 + retained_intron 170652-170917 asmbl_5219 // Retained and Spliced Intron # retained_intron 170652-171007 (orient:+) max_ev_support = 1 # spliced_intron 170652-171007 (orient:+) max_ev_support = 1 scaffold_11 + intron 170652-171007 asmbl_5216,asmbl_5218,asmbl_5220 scaffold_11 + retained_intron 170652-171007 asmbl_5219 // Retained and Spliced Intron # retained_intron 174383-174536 (orient:+) max_ev_support = 1 # spliced_intron 174383-174536 (orient:+) max_ev_support = 2 scaffold_11 + intron 174383-174536 asmbl_5223,asmbl_5225,asmbl_5226 scaffold_11 + retained_intron 174383-174536 asmbl_5224,asmbl_5227 // Retained and Spliced Intron # retained_intron 175992-176605 (orient:+) max_ev_support = 1 # spliced_intron 175992-176605 (orient:+) max_ev_support = 2 scaffold_11 + intron 175992-176605 asmbl_5223,asmbl_5224 scaffold_11 + retained_intron 175992-176605 asmbl_5225,asmbl_5226,asmbl_5227 // Retained and Spliced Intron # retained_intron 257277-257296 (orient:+) max_ev_support = 2 # spliced_intron 257277-257296 (orient:+) max_ev_support = 1 scaffold_11 + intron 257277-257296 asmbl_5243 scaffold_11 + retained_intron 257277-257296 asmbl_5242 // Retained and Spliced Intron # retained_intron 854023-854153 (orient:+) max_ev_support = 2 # spliced_intron 854023-854153 (orient:+) max_ev_support = 2 scaffold_11 + intron 854023-854153 asmbl_5266,asmbl_5269 scaffold_11 + retained_intron 854023-854153 asmbl_5265 // Retained and Spliced Intron # retained_intron 857013-857158 (orient:+) max_ev_support = 1 # spliced_intron 857013-857158 (orient:+) max_ev_support = 2 scaffold_11 + intron 857013-857158 asmbl_5266,asmbl_5268,asmbl_5269,asmbl_5271 scaffold_11 + retained_intron 857013-857158 asmbl_5270 // Retained and Spliced Intron # retained_intron 932741-932796 (orient:+) max_ev_support = 2 # spliced_intron 932741-932796 (orient:+) max_ev_support = 1 scaffold_11 + intron 932741-932796 asmbl_5276 scaffold_11 + retained_intron 932741-932796 asmbl_5275 // Exon Skipping and Retention # skipped_exon 1143485-1145193 (orient:+) max_ev_support = 2 # retained_exon 1143917-1145017 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 1143917-1144108,1144826-1145017 asmbl_5282 scaffold_11 + intron_skips_exon 1143485-1145193 asmbl_5281 // Exon Skipping and Retention # skipped_exon 1571628-1572065 (orient:+) max_ev_support = 1 # retained_exon 1571883-1571987 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 1571883-1571987 asmbl_5293 scaffold_11 + intron_skips_exon 1571628-1572065 asmbl_5294 // Retained and Spliced Intron # retained_intron 1985399-1985437 (orient:+) max_ev_support = 1 # spliced_intron 1985399-1985437 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985399-1985437 asmbl_5309 scaffold_11 + retained_intron 1985399-1985437 asmbl_5308 // Retained and Spliced Intron # retained_intron 1985477-1985515 (orient:+) max_ev_support = 1 # spliced_intron 1985477-1985515 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985477-1985515 asmbl_5308 scaffold_11 + retained_intron 1985477-1985515 asmbl_5309 // Retained and Spliced Intron # retained_intron 1985555-1985593 (orient:+) max_ev_support = 1 # spliced_intron 1985555-1985593 (orient:+) max_ev_support = 1 scaffold_11 + intron 1985555-1985593 asmbl_5308 scaffold_11 + retained_intron 1985555-1985593 asmbl_5309 // Retained and Spliced Intron # retained_intron 2061239-2061594 (orient:+) max_ev_support = 4 # spliced_intron 2061239-2061594 (orient:+) max_ev_support = 1 scaffold_11 + intron 2061239-2061594 asmbl_5313 scaffold_11 + retained_intron 2061239-2061594 asmbl_5310,asmbl_5311 // Retained and Spliced Intron # retained_intron 2061501-2061594 (orient:+) max_ev_support = 4 # spliced_intron 2061501-2061594 (orient:+) max_ev_support = 1 scaffold_11 + intron 2061501-2061594 asmbl_5314 scaffold_11 + retained_intron 2061501-2061594 asmbl_5310,asmbl_5311 // Retained and Spliced Intron # retained_intron 2061692-2061854 (orient:+) max_ev_support = 1 # spliced_intron 2061692-2061854 (orient:+) max_ev_support = 2 scaffold_11 + intron 2061692-2061854 asmbl_5310,asmbl_5313,asmbl_5314 scaffold_11 + retained_intron 2061692-2061854 asmbl_5311 // Exon Skipping and Retention # skipped_exon 2090208-2091184 (orient:+) max_ev_support = 2 # retained_exon 2090878-2090989 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 2090878-2090989 asmbl_5318,asmbl_5319 scaffold_11 + intron_skips_exon 2090208-2091184 asmbl_5320 // Retained and Spliced Intron # retained_intron 2833544-2833641 (orient:+) max_ev_support = 1 # spliced_intron 2833544-2833641 (orient:+) max_ev_support = 2 scaffold_11 + intron 2833544-2833641 asmbl_5338,asmbl_5339 scaffold_11 + retained_intron 2833544-2833641 asmbl_5340 // Exon Skipping and Retention # skipped_exon 3024724-3026445 (orient:+) max_ev_support = 1 # retained_exon 3025502-3025890 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3025502-3025890 asmbl_5356 scaffold_11 + intron_skips_exon 3024724-3026445 asmbl_5355 // Exon Skipping and Retention # skipped_exon 3024461-3026445 (orient:+) max_ev_support = 2 # retained_exon 3025502-3025890 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3025502-3025890 asmbl_5356 scaffold_11 + intron_skips_exon 3024461-3026445 asmbl_5357 // Exon Skipping and Retention # skipped_exon 3091771-3092702 (orient:+) max_ev_support = 1 # retained_exon 3091977-3092261 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 3091977-3092261 asmbl_5359 scaffold_11 + intron_skips_exon 3091771-3092702 asmbl_5360 // Exon Skipping and Retention # skipped_exon 3092262-3093974 (orient:+) max_ev_support = 2 # retained_exon 3092703-3092987 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3092703-3092987 asmbl_5360 scaffold_11 + intron_skips_exon 3092262-3093974 asmbl_5359 // Retained and Spliced Intron # retained_intron 3095645-3095846 (orient:+) max_ev_support = 1 # spliced_intron 3095645-3095846 (orient:+) max_ev_support = 1 scaffold_11 + intron 3095645-3095846 asmbl_5362 scaffold_11 + retained_intron 3095645-3095846 asmbl_5363 // Retained and Spliced Intron # retained_intron 3186863-3186973 (orient:+) max_ev_support = 1 # spliced_intron 3186863-3186973 (orient:+) max_ev_support = 1 scaffold_11 + intron 3186863-3186973 asmbl_5369 scaffold_11 + retained_intron 3186863-3186973 asmbl_5370 // Retained and Spliced Intron # retained_intron 3358702-3358797 (orient:+) max_ev_support = 1 # spliced_intron 3358702-3358797 (orient:+) max_ev_support = 1 scaffold_11 + intron 3358702-3358797 asmbl_5382,asmbl_5383 scaffold_11 + retained_intron 3358702-3358797 asmbl_5384 // Retained and Spliced Intron # retained_intron 3486134-3486289 (orient:+) max_ev_support = 3 # spliced_intron 3486134-3486289 (orient:+) max_ev_support = 1 scaffold_11 + intron 3486134-3486289 asmbl_5395 scaffold_11 + retained_intron 3486134-3486289 asmbl_5394 // Exon Skipping and Retention # skipped_exon 3496183-3497672 (orient:+) max_ev_support = 1 # retained_exon 3496299-3497549 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3496299-3496619,3497229-3497549 asmbl_5398 scaffold_11 + intron_skips_exon 3496183-3497672 asmbl_5399 // Exon Skipping and Retention # skipped_exon 3497053-3497672 (orient:+) max_ev_support = 1 # retained_exon 3497229-3497549 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3497229-3497549 asmbl_5398,asmbl_5402 scaffold_11 + intron_skips_exon 3497053-3497672 asmbl_5401 // Exon Skipping and Retention # skipped_exon 3497550-3498550 (orient:+) max_ev_support = 1 # retained_exon 3497673-3498441 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3497673-3498002,3498112-3498441 asmbl_5398,asmbl_5402 scaffold_11 + intron_skips_exon 3497550-3498550 asmbl_5400 // Exon Skipping and Retention # skipped_exon 3496620-3497228 (orient:+) max_ev_support = 1 # retained_exon 3496723-3497052 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3496723-3497052 asmbl_5401,asmbl_5402 scaffold_11 + intron_skips_exon 3496620-3497228 asmbl_5398 // Exon Skipping and Retention # skipped_exon 3496428-3498550 (orient:+) max_ev_support = 1 # retained_exon 3496723-3498441 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3496723-3497052,3497673-3498002,3498112-3498441 asmbl_5401 scaffold_11 + intron_skips_exon 3496428-3497357 asmbl_5400 scaffold_11 + intron_skips_exon 3497550-3498550 asmbl_5400 // Exon Skipping and Retention # skipped_exon 3496428-3497357 (orient:+) max_ev_support = 1 # retained_exon 3496723-3497052 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3496723-3497052 asmbl_5401,asmbl_5402 scaffold_11 + intron_skips_exon 3496428-3497357 asmbl_5400 // Exon Skipping and Retention # skipped_exon 3514872-3517181 (orient:+) max_ev_support = 1 # retained_exon 3516397-3516552 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 3516397-3516552 asmbl_5405 scaffold_11 + intron_skips_exon 3514872-3517181 asmbl_5404 // Retained and Spliced Intron # retained_intron 3697980-3698259 (orient:+) max_ev_support = 2 # spliced_intron 3697980-3698259 (orient:+) max_ev_support = 1 scaffold_11 + intron 3697980-3698259 asmbl_5417 scaffold_11 + retained_intron 3697980-3698259 asmbl_5415 // Retained and Spliced Intron # retained_intron 3698054-3698259 (orient:+) max_ev_support = 2 # spliced_intron 3698054-3698259 (orient:+) max_ev_support = 2 scaffold_11 + intron 3698054-3698259 asmbl_5416 scaffold_11 + retained_intron 3698054-3698259 asmbl_5415 // Exon Skipping and Retention # skipped_exon 3762846-3764045 (orient:+) max_ev_support = 1 # retained_exon 3763394-3763595 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 3763394-3763595 asmbl_5420 scaffold_11 + intron_skips_exon 3762846-3764045 asmbl_5421 // Retained and Spliced Intron # retained_intron 3901228-3901407 (orient:+) max_ev_support = 1 # spliced_intron 3901228-3901407 (orient:+) max_ev_support = 1 scaffold_11 + intron 3901228-3901407 asmbl_5429 scaffold_11 + retained_intron 3901228-3901407 asmbl_5430 // Retained and Spliced Intron # retained_intron 4639501-4639586 (orient:+) max_ev_support = 2 # spliced_intron 4639501-4639586 (orient:+) max_ev_support = 2 scaffold_11 + intron 4639501-4639586 asmbl_5450,asmbl_5455 scaffold_11 + retained_intron 4639501-4639586 asmbl_5453 // Retained and Spliced Intron # retained_intron 4666941-4667075 (orient:+) max_ev_support = 3 # spliced_intron 4666941-4667075 (orient:+) max_ev_support = 2 scaffold_11 + intron 4666941-4667075 asmbl_5459,asmbl_5460 scaffold_11 + retained_intron 4666941-4667075 asmbl_5457,asmbl_5458 // Retained and Spliced Intron # retained_intron 4666033-4666246 (orient:+) max_ev_support = 2 # spliced_intron 4666033-4666246 (orient:+) max_ev_support = 1 scaffold_11 + intron 4666033-4666246 asmbl_5457,asmbl_5458,asmbl_5460 scaffold_11 + retained_intron 4666033-4666246 asmbl_5459 // Retained and Spliced Intron # retained_intron 4747068-4747472 (orient:+) max_ev_support = 2 # spliced_intron 4747068-4747472 (orient:+) max_ev_support = 1 scaffold_11 + intron 4747068-4747472 asmbl_5474 scaffold_11 + retained_intron 4747068-4747472 asmbl_5473 // Retained and Spliced Intron # retained_intron 4756929-4757259 (orient:+) max_ev_support = 2 # spliced_intron 4756929-4757259 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756929-4757259 asmbl_5480,asmbl_5482 scaffold_11 + retained_intron 4756929-4757259 asmbl_5481 // Retained and Spliced Intron # retained_intron 4756244-4756446 (orient:+) max_ev_support = 1 # spliced_intron 4756244-4756446 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756244-4756446 asmbl_5480 scaffold_11 + retained_intron 4756244-4756446 asmbl_5482 // Retained and Spliced Intron # retained_intron 4756626-4756833 (orient:+) max_ev_support = 1 # spliced_intron 4756626-4756833 (orient:+) max_ev_support = 2 scaffold_11 + intron 4756626-4756833 asmbl_5480 scaffold_11 + retained_intron 4756626-4756833 asmbl_5482 // Exon Skipping and Retention # skipped_exon 4859568-4861210 (orient:+) max_ev_support = 1 # retained_exon 4860785-4860893 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 4860785-4860893 asmbl_5490 scaffold_11 + intron_skips_exon 4859568-4861210 asmbl_5491 // Retained and Spliced Intron # retained_intron 5258781-5258830 (orient:+) max_ev_support = 1 # spliced_intron 5258781-5258830 (orient:+) max_ev_support = 1 scaffold_11 + intron 5258781-5258830 asmbl_5519 scaffold_11 + retained_intron 5258781-5258830 asmbl_5520 // Retained and Spliced Intron # retained_intron 5258825-5258854 (orient:+) max_ev_support = 1 # spliced_intron 5258825-5258854 (orient:+) max_ev_support = 1 scaffold_11 + intron 5258825-5258854 asmbl_5521 scaffold_11 + retained_intron 5258825-5258854 asmbl_5520 // Retained and Spliced Intron # retained_intron 5525403-5525484 (orient:+) max_ev_support = 1 # spliced_intron 5525403-5525484 (orient:+) max_ev_support = 2 scaffold_11 + intron 5525403-5525484 asmbl_5529 scaffold_11 + retained_intron 5525403-5525484 asmbl_5530 // Retained and Spliced Intron # retained_intron 5651474-5651835 (orient:+) max_ev_support = 1 # spliced_intron 5651474-5651835 (orient:+) max_ev_support = 2 scaffold_11 + intron 5651474-5651835 asmbl_5535 scaffold_11 + retained_intron 5651474-5651835 asmbl_5537 // Exon Skipping and Retention # skipped_exon 6063224-6064807 (orient:+) max_ev_support = 2 # retained_exon 6063857-6063910 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 6063857-6063910 asmbl_5572 scaffold_11 + intron_skips_exon 6063224-6064807 asmbl_5569 // Retained and Spliced Intron # retained_intron 6254831-6255055 (orient:+) max_ev_support = 3 # spliced_intron 6254831-6255055 (orient:+) max_ev_support = 2 scaffold_11 + intron 6254831-6255055 asmbl_5586 scaffold_11 + retained_intron 6254831-6255055 asmbl_5582,asmbl_5584 // Retained and Spliced Intron # retained_intron 6254831-6256304 (orient:+) max_ev_support = 4 # spliced_intron 6254831-6256304 (orient:+) max_ev_support = 2 scaffold_11 + intron 6254831-6256304 asmbl_5587,asmbl_5589,asmbl_5590 scaffold_11 + retained_intron 6254831-6256304 asmbl_5582 // Retained and Spliced Intron # retained_intron 6251734-6252621 (orient:+) max_ev_support = 3 # spliced_intron 6251734-6252621 (orient:+) max_ev_support = 2 scaffold_11 + intron 6251734-6252621 asmbl_5584,asmbl_5586,asmbl_5589 scaffold_11 + retained_intron 6251734-6252621 asmbl_5583 // Retained and Spliced Intron # retained_intron 6251734-6253377 (orient:+) max_ev_support = 4 # spliced_intron 6251734-6253377 (orient:+) max_ev_support = 2 scaffold_11 + intron 6251734-6253377 asmbl_5587 scaffold_11 + retained_intron 6251734-6253377 asmbl_5583 // Retained and Spliced Intron # retained_intron 6252706-6253377 (orient:+) max_ev_support = 2 # spliced_intron 6252706-6253377 (orient:+) max_ev_support = 2 scaffold_11 + intron 6252706-6253377 asmbl_5584,asmbl_5586,asmbl_5589,asmbl_5590 scaffold_11 + retained_intron 6252706-6253377 asmbl_5583 // Exon Skipping and Retention # skipped_exon 6251734-6253377 (orient:+) max_ev_support = 2 # retained_exon 6252622-6252705 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 6252622-6252705 asmbl_5584,asmbl_5586,asmbl_5589 scaffold_11 + intron_skips_exon 6251734-6253377 asmbl_5587 // Exon Skipping and Retention # skipped_exon 6504654-6505440 (orient:+) max_ev_support = 1 # retained_exon 6504884-6505023 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 6504884-6505023 asmbl_5595 scaffold_11 + intron_skips_exon 6504654-6505440 asmbl_5596 // Exon Skipping and Retention # skipped_exon 7047689-7049335 (orient:+) max_ev_support = 1 # retained_exon 7048932-7049050 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7048932-7049050 asmbl_5610,asmbl_5613,asmbl_5615 scaffold_11 + intron_skips_exon 7047689-7049335 asmbl_5612 // Retained and Spliced Intron # retained_intron 7049528-7049788 (orient:+) max_ev_support = 2 # spliced_intron 7049528-7049788 (orient:+) max_ev_support = 3 scaffold_11 + intron 7049528-7049788 asmbl_5612,asmbl_5614,asmbl_5615 scaffold_11 + retained_intron 7049528-7049788 asmbl_5611 // Retained and Spliced Intron # retained_intron 7049578-7049788 (orient:+) max_ev_support = 2 # spliced_intron 7049578-7049788 (orient:+) max_ev_support = 3 scaffold_11 + intron 7049578-7049788 asmbl_5610,asmbl_5613 scaffold_11 + retained_intron 7049578-7049788 asmbl_5611 // Retained and Spliced Intron # retained_intron 7091036-7091125 (orient:+) max_ev_support = 1 # spliced_intron 7091036-7091125 (orient:+) max_ev_support = 2 scaffold_11 + intron 7091036-7091125 asmbl_5622 scaffold_11 + retained_intron 7091036-7091125 asmbl_5623 // Exon Skipping and Retention # skipped_exon 7403201-7404365 (orient:+) max_ev_support = 2 # retained_exon 7403752-7404186 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7403752-7404186 asmbl_5634 scaffold_11 + intron_skips_exon 7403201-7404365 asmbl_5635 // Retained and Spliced Intron # retained_intron 7819465-7819560 (orient:+) max_ev_support = 3 # spliced_intron 7819465-7819560 (orient:+) max_ev_support = 3 scaffold_11 + intron 7819465-7819560 asmbl_5648 scaffold_11 + retained_intron 7819465-7819560 asmbl_5649 // Exon Skipping and Retention # skipped_exon 7924464-7925337 (orient:+) max_ev_support = 3 # retained_exon 7924530-7924768 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 7924530-7924768 asmbl_5663 scaffold_11 + intron_skips_exon 7924464-7925337 asmbl_5665 // Retained and Spliced Intron # retained_intron 7924431-7924529 (orient:+) max_ev_support = 3 # spliced_intron 7924431-7924529 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924431-7924529 asmbl_5663 scaffold_11 + retained_intron 7924431-7924529 asmbl_5664 // Retained and Spliced Intron # retained_intron 7924464-7925337 (orient:+) max_ev_support = 3 # spliced_intron 7924464-7925337 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924464-7925337 asmbl_5665 scaffold_11 + retained_intron 7924464-7925337 asmbl_5664 // Retained and Spliced Intron # retained_intron 7924769-7925337 (orient:+) max_ev_support = 3 # spliced_intron 7924769-7925337 (orient:+) max_ev_support = 3 scaffold_11 + intron 7924769-7925337 asmbl_5663 scaffold_11 + retained_intron 7924769-7925337 asmbl_5664 // Retained and Spliced Intron # retained_intron 8050351-8050449 (orient:+) max_ev_support = 3 # spliced_intron 8050351-8050449 (orient:+) max_ev_support = 3 scaffold_11 + intron 8050351-8050449 asmbl_5676 scaffold_11 + retained_intron 8050351-8050449 asmbl_5675 // Retained and Spliced Intron # retained_intron 8082241-8082340 (orient:+) max_ev_support = 4 # spliced_intron 8082241-8082340 (orient:+) max_ev_support = 2 scaffold_11 + intron 8082241-8082340 asmbl_5681 scaffold_11 + retained_intron 8082241-8082340 asmbl_5678,asmbl_5679,asmbl_5680 // Retained and Spliced Intron # retained_intron 8079637-8079771 (orient:+) max_ev_support = 2 # spliced_intron 8079637-8079771 (orient:+) max_ev_support = 3 scaffold_11 + intron 8079637-8079771 asmbl_5678 scaffold_11 + retained_intron 8079637-8079771 asmbl_5679,asmbl_5680,asmbl_5681 // Retained and Spliced Intron # retained_intron 8080714-8080789 (orient:+) max_ev_support = 2 # spliced_intron 8080714-8080789 (orient:+) max_ev_support = 4 scaffold_11 + intron 8080714-8080789 asmbl_5678,asmbl_5679,asmbl_5681 scaffold_11 + retained_intron 8080714-8080789 asmbl_5680 // Retained and Spliced Intron # retained_intron 8099759-8099979 (orient:+) max_ev_support = 2 # spliced_intron 8099759-8099979 (orient:+) max_ev_support = 3 scaffold_11 + intron 8099759-8099979 asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692 scaffold_11 + retained_intron 8099759-8099979 asmbl_5690,asmbl_5691 // Retained and Spliced Intron # retained_intron 8100073-8100172 (orient:+) max_ev_support = 2 # spliced_intron 8100073-8100172 (orient:+) max_ev_support = 3 scaffold_11 + intron 8100073-8100172 asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692 scaffold_11 + retained_intron 8100073-8100172 asmbl_5690,asmbl_5691 // Retained and Spliced Intron # retained_intron 8100269-8100367 (orient:+) max_ev_support = 2 # spliced_intron 8100269-8100367 (orient:+) max_ev_support = 3 scaffold_11 + intron 8100269-8100367 asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5692 scaffold_11 + retained_intron 8100269-8100367 asmbl_5690,asmbl_5691 // Retained and Spliced Intron # retained_intron 8099585-8099683 (orient:+) max_ev_support = 2 # spliced_intron 8099585-8099683 (orient:+) max_ev_support = 3 scaffold_11 + intron 8099585-8099683 asmbl_5686,asmbl_5687,asmbl_5688,asmbl_5689,asmbl_5690,asmbl_5692 scaffold_11 + retained_intron 8099585-8099683 asmbl_5691 // Exon Skipping and Retention # skipped_exon 8102683-8103519 (orient:+) max_ev_support = 1 # retained_exon 8102954-8103388 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 8102954-8103128,8103234-8103388 asmbl_5693 scaffold_11 + intron_skips_exon 8102683-8103519 asmbl_5698 // Retained and Spliced Intron # retained_intron 8103129-8103233 (orient:+) max_ev_support = 2 # spliced_intron 8103129-8103233 (orient:+) max_ev_support = 2 scaffold_11 + intron 8103129-8103233 asmbl_5693,asmbl_5694,asmbl_5696,asmbl_5697 scaffold_11 + retained_intron 8103129-8103233 asmbl_5695 // Retained and Spliced Intron # retained_intron 8105125-8105409 (orient:+) max_ev_support = 1 # spliced_intron 8105125-8105409 (orient:+) max_ev_support = 2 scaffold_11 + intron 8105125-8105409 asmbl_5693,asmbl_5694,asmbl_5697,asmbl_5698,asmbl_5699,asmbl_5700 scaffold_11 + retained_intron 8105125-8105409 asmbl_5696 // Exon Skipping and Retention # skipped_exon 8308762-8310348 (orient:+) max_ev_support = 2 # retained_exon 8309207-8309245 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 8309207-8309245 asmbl_5713 scaffold_11 + intron_skips_exon 8308762-8310348 asmbl_5710 // Exon Skipping and Retention # skipped_exon 8330782-8331357 (orient:+) max_ev_support = 2 # retained_exon 8331179-8331294 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8331179-8331294 asmbl_5715 scaffold_11 + intron_skips_exon 8330782-8331357 asmbl_5716 // Retained and Spliced Intron # retained_intron 8398703-8399332 (orient:+) max_ev_support = 4 # spliced_intron 8398703-8399332 (orient:+) max_ev_support = 1 scaffold_11 + intron 8398703-8399332 asmbl_5730 scaffold_11 + retained_intron 8398703-8399332 asmbl_5726,asmbl_5727,asmbl_5729 // Retained and Spliced Intron # retained_intron 8399407-8399497 (orient:+) max_ev_support = 1 # spliced_intron 8399407-8399497 (orient:+) max_ev_support = 4 scaffold_11 + intron 8399407-8399497 asmbl_5726,asmbl_5727,asmbl_5728,asmbl_5730 scaffold_11 + retained_intron 8399407-8399497 asmbl_5729 // Exon Skipping and Retention # skipped_exon 8397912-8399332 (orient:+) max_ev_support = 2 # retained_exon 8398329-8398702 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 8398329-8398702 asmbl_5730 scaffold_11 + intron_skips_exon 8397912-8399332 asmbl_5728 // Exon Skipping and Retention # skipped_exon 8476825-8478805 (orient:+) max_ev_support = 3 # retained_exon 8478214-8478294 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8478214-8478294 asmbl_5745 scaffold_11 + intron_skips_exon 8476825-8478805 asmbl_5746 // Exon Skipping and Retention # skipped_exon 8478295-8479288 (orient:+) max_ev_support = 3 # retained_exon 8478806-8478871 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 8478806-8478871 asmbl_5746 scaffold_11 + intron_skips_exon 8478295-8479288 asmbl_5745 // Retained and Spliced Intron # retained_intron 8478872-8479288 (orient:+) max_ev_support = 2 # spliced_intron 8478872-8479288 (orient:+) max_ev_support = 3 scaffold_11 + intron 8478872-8479288 asmbl_5746,asmbl_5748 scaffold_11 + retained_intron 8478872-8479288 asmbl_5749 // Retained and Spliced Intron # retained_intron 8567155-8567273 (orient:+) max_ev_support = 2 # spliced_intron 8567155-8567273 (orient:+) max_ev_support = 3 scaffold_11 + intron 8567155-8567273 asmbl_5762 scaffold_11 + retained_intron 8567155-8567273 asmbl_5763,asmbl_5764 // Retained and Spliced Intron # retained_intron 8600562-8601135 (orient:+) max_ev_support = 2 # spliced_intron 8600562-8601135 (orient:+) max_ev_support = 3 scaffold_11 + intron 8600562-8601135 asmbl_5768,asmbl_5770,asmbl_5771,asmbl_5774 scaffold_11 + retained_intron 8600562-8601135 asmbl_5769 // Retained and Spliced Intron # retained_intron 8601859-8601985 (orient:+) max_ev_support = 2 # spliced_intron 8601859-8601985 (orient:+) max_ev_support = 3 scaffold_11 + intron 8601859-8601985 asmbl_5768,asmbl_5769,asmbl_5771,asmbl_5774 scaffold_11 + retained_intron 8601859-8601985 asmbl_5770 // Retained and Spliced Intron # retained_intron 8723372-8723845 (orient:+) max_ev_support = 5 # spliced_intron 8723372-8723845 (orient:+) max_ev_support = 3 scaffold_11 + intron 8723372-8723845 asmbl_5793,asmbl_5794 scaffold_11 + retained_intron 8723372-8723845 asmbl_5791,asmbl_5792 // Retained and Spliced Intron # retained_intron 8735988-8736072 (orient:+) max_ev_support = 1 # spliced_intron 8735988-8736072 (orient:+) max_ev_support = 1 scaffold_11 + intron 8735988-8736072 asmbl_5799 scaffold_11 + retained_intron 8735988-8736072 asmbl_5798 // Exon Skipping and Retention # skipped_exon 9122914-9123614 (orient:+) max_ev_support = 2 # retained_exon 9123255-9123278 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9123255-9123278 asmbl_5830,asmbl_5831 scaffold_11 + intron_skips_exon 9122914-9123614 asmbl_5829 // Exon Skipping and Retention # skipped_exon 9130809-9131505 (orient:+) max_ev_support = 2 # retained_exon 9131081-9131092 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 9131081-9131092 asmbl_5831 scaffold_11 + intron_skips_exon 9130809-9131505 asmbl_5829,asmbl_5830,asmbl_5832 // Exon Skipping and Retention # skipped_exon 9149571-9150033 (orient:+) max_ev_support = 2 # retained_exon 9149693-9149768 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9149693-9149768 asmbl_5833 scaffold_11 + intron_skips_exon 9149571-9150033 asmbl_5834 // Retained and Spliced Intron # retained_intron 9174309-9174475 (orient:+) max_ev_support = 3 # spliced_intron 9174309-9174475 (orient:+) max_ev_support = 3 scaffold_11 + intron 9174309-9174475 asmbl_5838 scaffold_11 + retained_intron 9174309-9174475 asmbl_5837 // Retained and Spliced Intron # retained_intron 9281871-9282068 (orient:+) max_ev_support = 3 # spliced_intron 9281871-9282068 (orient:+) max_ev_support = 2 scaffold_11 + intron 9281871-9282068 asmbl_5845,asmbl_5846 scaffold_11 + retained_intron 9281871-9282068 asmbl_5844 // Exon Skipping and Retention # skipped_exon 9816932-9817297 (orient:+) max_ev_support = 1 # retained_exon 9817110-9817177 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 9817110-9817177 asmbl_5862 scaffold_11 + intron_skips_exon 9816932-9817297 asmbl_5863 // Retained and Spliced Intron # retained_intron 9829435-9829603 (orient:+) max_ev_support = 3 # spliced_intron 9829435-9829603 (orient:+) max_ev_support = 1 scaffold_11 + intron 9829435-9829603 asmbl_5867,asmbl_5874 scaffold_11 + retained_intron 9829435-9829603 asmbl_5866,asmbl_5871,asmbl_5875 // Retained and Spliced Intron # retained_intron 9829435-9831678 (orient:+) max_ev_support = 5 # spliced_intron 9829435-9831678 (orient:+) max_ev_support = 2 scaffold_11 + intron 9829435-9831678 asmbl_5868,asmbl_5873 scaffold_11 + retained_intron 9829435-9831678 asmbl_5866 // Retained and Spliced Intron # retained_intron 9829790-9830568 (orient:+) max_ev_support = 3 # spliced_intron 9829790-9830568 (orient:+) max_ev_support = 2 scaffold_11 + intron 9829790-9830568 asmbl_5871 scaffold_11 + retained_intron 9829790-9830568 asmbl_5866,asmbl_5867,asmbl_5874,asmbl_5875 // Retained and Spliced Intron # retained_intron 9830658-9831678 (orient:+) max_ev_support = 5 # spliced_intron 9830658-9831678 (orient:+) max_ev_support = 1 scaffold_11 + intron 9830658-9831678 asmbl_5867,asmbl_5871,asmbl_5875 scaffold_11 + retained_intron 9830658-9831678 asmbl_5866 // Exon Skipping and Retention # skipped_exon 9829435-9831678 (orient:+) max_ev_support = 2 # retained_exon 9829604-9830657 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 9829604-9830657 asmbl_5867 scaffold_11 + intron_skips_exon 9829435-9831678 asmbl_5868,asmbl_5873 // Retained and Spliced Intron # retained_intron 9832457-9832783 (orient:+) max_ev_support = 3 # spliced_intron 9832457-9832783 (orient:+) max_ev_support = 2 scaffold_11 + intron 9832457-9832783 asmbl_5866,asmbl_5868,asmbl_5871,asmbl_5873,asmbl_5875 scaffold_11 + retained_intron 9832457-9832783 asmbl_5867,asmbl_5872 // Retained and Spliced Intron # retained_intron 9832014-9832313 (orient:+) max_ev_support = 1 # spliced_intron 9832014-9832313 (orient:+) max_ev_support = 3 scaffold_11 + intron 9832014-9832313 asmbl_5866,asmbl_5867,asmbl_5868,asmbl_5871,asmbl_5872,asmbl_5875 scaffold_11 + retained_intron 9832014-9832313 asmbl_5873 // Retained and Spliced Intron # retained_intron 9832014-9832321 (orient:+) max_ev_support = 1 # spliced_intron 9832014-9832321 (orient:+) max_ev_support = 2 scaffold_11 + intron 9832014-9832321 asmbl_5869 scaffold_11 + retained_intron 9832014-9832321 asmbl_5873 // Retained and Spliced Intron # retained_intron 9926131-9926272 (orient:+) max_ev_support = 1 # spliced_intron 9926131-9926272 (orient:+) max_ev_support = 3 scaffold_11 + intron 9926131-9926272 asmbl_5882 scaffold_11 + retained_intron 9926131-9926272 asmbl_5883 // Retained and Spliced Intron # retained_intron 10322368-10322453 (orient:+) max_ev_support = 1 # spliced_intron 10322368-10322453 (orient:+) max_ev_support = 2 scaffold_11 + intron 10322368-10322453 asmbl_5899 scaffold_11 + retained_intron 10322368-10322453 asmbl_5900,asmbl_5901 // Retained and Spliced Intron # retained_intron 10398841-10399063 (orient:+) max_ev_support = 1 # spliced_intron 10398841-10399063 (orient:+) max_ev_support = 2 scaffold_11 + intron 10398841-10399063 asmbl_5905,asmbl_5906 scaffold_11 + retained_intron 10398841-10399063 asmbl_5908 // Retained and Spliced Intron # retained_intron 10398883-10399063 (orient:+) max_ev_support = 1 # spliced_intron 10398883-10399063 (orient:+) max_ev_support = 1 scaffold_11 + intron 10398883-10399063 asmbl_5907,asmbl_5909 scaffold_11 + retained_intron 10398883-10399063 asmbl_5908 // Retained and Spliced Intron # retained_intron 11641641-11641750 (orient:+) max_ev_support = 2 # spliced_intron 11641641-11641750 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641641-11641750 asmbl_5946,asmbl_5949,asmbl_5950,asmbl_5952,asmbl_5953 scaffold_11 + retained_intron 11641641-11641750 asmbl_5948 // Retained and Spliced Intron # retained_intron 11641796-11641901 (orient:+) max_ev_support = 2 # spliced_intron 11641796-11641901 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641796-11641901 asmbl_5946,asmbl_5949,asmbl_5950,asmbl_5952,asmbl_5953 scaffold_11 + retained_intron 11641796-11641901 asmbl_5948 // Retained and Spliced Intron # retained_intron 11640396-11641269 (orient:+) max_ev_support = 1 # spliced_intron 11640396-11641269 (orient:+) max_ev_support = 2 scaffold_11 + intron 11640396-11641269 asmbl_5946,asmbl_5950 scaffold_11 + retained_intron 11640396-11641269 asmbl_5949,asmbl_5952,asmbl_5953 // Retained and Spliced Intron # retained_intron 11641334-11641468 (orient:+) max_ev_support = 1 # spliced_intron 11641334-11641468 (orient:+) max_ev_support = 2 scaffold_11 + intron 11641334-11641468 asmbl_5946,asmbl_5950 scaffold_11 + retained_intron 11641334-11641468 asmbl_5949,asmbl_5952,asmbl_5953 // Retained and Spliced Intron # retained_intron 11639424-11639532 (orient:+) max_ev_support = 1 # spliced_intron 11639424-11639532 (orient:+) max_ev_support = 2 scaffold_11 + intron 11639424-11639532 asmbl_5946,asmbl_5949,asmbl_5952,asmbl_5953 scaffold_11 + retained_intron 11639424-11639532 asmbl_5950,asmbl_5951 // Retained and Spliced Intron # retained_intron 11785553-11785678 (orient:+) max_ev_support = 1 # spliced_intron 11785553-11785678 (orient:+) max_ev_support = 1 scaffold_11 + intron 11785553-11785678 asmbl_5964,asmbl_5965 scaffold_11 + retained_intron 11785553-11785678 asmbl_5961 // Retained and Spliced Intron # retained_intron 11785562-11785678 (orient:+) max_ev_support = 1 # spliced_intron 11785562-11785678 (orient:+) max_ev_support = 1 scaffold_11 + intron 11785562-11785678 asmbl_5963 scaffold_11 + retained_intron 11785562-11785678 asmbl_5961 // Retained and Spliced Intron # retained_intron 11783168-11783654 (orient:+) max_ev_support = 1 # spliced_intron 11783168-11783654 (orient:+) max_ev_support = 1 scaffold_11 + intron 11783168-11783654 asmbl_5962 scaffold_11 + retained_intron 11783168-11783654 asmbl_5964 // Retained and Spliced Intron # retained_intron 11783168-11784314 (orient:+) max_ev_support = 1 # spliced_intron 11783168-11784314 (orient:+) max_ev_support = 1 scaffold_11 + intron 11783168-11784314 asmbl_5961,asmbl_5963,asmbl_5965 scaffold_11 + retained_intron 11783168-11784314 asmbl_5964 // Retained and Spliced Intron # retained_intron 13092586-13092869 (orient:+) max_ev_support = 2 # spliced_intron 13092586-13092869 (orient:+) max_ev_support = 1 scaffold_11 + intron 13092586-13092869 asmbl_6005,asmbl_6008 scaffold_11 + retained_intron 13092586-13092869 asmbl_5997,asmbl_5998,asmbl_5999,asmbl_6002,asmbl_6003,asmbl_6004 // Retained and Spliced Intron # retained_intron 13092586-13094447 (orient:+) max_ev_support = 3 # spliced_intron 13092586-13094447 (orient:+) max_ev_support = 2 scaffold_11 + intron 13092586-13094447 asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007 scaffold_11 + retained_intron 13092586-13094447 asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003 // Retained and Spliced Intron # retained_intron 13092994-13093788 (orient:+) max_ev_support = 2 # spliced_intron 13092994-13093788 (orient:+) max_ev_support = 1 scaffold_11 + intron 13092994-13093788 asmbl_5999,asmbl_6004 scaffold_11 + retained_intron 13092994-13093788 asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003,asmbl_6005,asmbl_6008 // Retained and Spliced Intron # retained_intron 13094016-13094447 (orient:+) max_ev_support = 2 # spliced_intron 13094016-13094447 (orient:+) max_ev_support = 1 scaffold_11 + intron 13094016-13094447 asmbl_5999,asmbl_6004,asmbl_6008 scaffold_11 + retained_intron 13094016-13094447 asmbl_5997,asmbl_5998,asmbl_6002,asmbl_6003,asmbl_6005 // Exon Skipping and Retention # skipped_exon 13097080-13097573 (orient:+) max_ev_support = 2 # retained_exon 13097278-13097364 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 13097278-13097364 asmbl_5998,asmbl_5999,asmbl_6001,asmbl_6002,asmbl_6004,asmbl_6005,asmbl_6006,asmbl_6008 scaffold_11 + intron_skips_exon 13097080-13097573 asmbl_5997,asmbl_6000,asmbl_6003,asmbl_6007 // Exon Skipping and Retention # skipped_exon 13092586-13094447 (orient:+) max_ev_support = 2 # retained_exon 13093789-13094015 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 13093789-13094015 asmbl_5999,asmbl_6004 scaffold_11 + intron_skips_exon 13092586-13094447 asmbl_6000,asmbl_6001,asmbl_6006,asmbl_6007 // Retained and Spliced Intron # retained_intron 13246948-13247057 (orient:+) max_ev_support = 1 # spliced_intron 13246948-13247057 (orient:+) max_ev_support = 2 scaffold_11 + intron 13246948-13247057 asmbl_6012,asmbl_6014 scaffold_11 + retained_intron 13246948-13247057 asmbl_6015,asmbl_6016 // Retained and Spliced Intron # retained_intron 13256116-13256322 (orient:+) max_ev_support = 2 # spliced_intron 13256116-13256322 (orient:+) max_ev_support = 1 scaffold_11 + intron 13256116-13256322 asmbl_6020 scaffold_11 + retained_intron 13256116-13256322 asmbl_6018 // Retained and Spliced Intron # retained_intron 13256180-13256322 (orient:+) max_ev_support = 2 # spliced_intron 13256180-13256322 (orient:+) max_ev_support = 2 scaffold_11 + intron 13256180-13256322 asmbl_6017 scaffold_11 + retained_intron 13256180-13256322 asmbl_6018 // Retained and Spliced Intron # retained_intron 13257061-13257404 (orient:+) max_ev_support = 2 # spliced_intron 13257061-13257404 (orient:+) max_ev_support = 2 scaffold_11 + intron 13257061-13257404 asmbl_6017,asmbl_6018,asmbl_6020,asmbl_6021 scaffold_11 + retained_intron 13257061-13257404 asmbl_6019 // Retained and Spliced Intron # retained_intron 13256356-13256573 (orient:+) max_ev_support = 1 # spliced_intron 13256356-13256573 (orient:+) max_ev_support = 2 scaffold_11 + intron 13256356-13256573 asmbl_6017,asmbl_6018,asmbl_6020 scaffold_11 + retained_intron 13256356-13256573 asmbl_6021 // Retained and Spliced Intron # retained_intron 13384103-13384406 (orient:+) max_ev_support = 1 # spliced_intron 13384103-13384406 (orient:+) max_ev_support = 2 scaffold_11 + intron 13384103-13384406 asmbl_6029 scaffold_11 + retained_intron 13384103-13384406 asmbl_6030,asmbl_6031,asmbl_6032 // Retained and Spliced Intron # retained_intron 13541271-13541378 (orient:+) max_ev_support = 2 # spliced_intron 13541271-13541378 (orient:+) max_ev_support = 3 scaffold_11 + intron 13541271-13541378 asmbl_6037 scaffold_11 + retained_intron 13541271-13541378 asmbl_6038,asmbl_6039 // Retained and Spliced Intron # retained_intron 13541556-13541653 (orient:+) max_ev_support = 2 # spliced_intron 13541556-13541653 (orient:+) max_ev_support = 3 scaffold_11 + intron 13541556-13541653 asmbl_6037,asmbl_6039 scaffold_11 + retained_intron 13541556-13541653 asmbl_6038 // Retained and Spliced Intron # retained_intron 14528202-14528402 (orient:+) max_ev_support = 1 # spliced_intron 14528202-14528402 (orient:+) max_ev_support = 2 scaffold_11 + intron 14528202-14528402 asmbl_6064 scaffold_11 + retained_intron 14528202-14528402 asmbl_6065 // Exon Skipping and Retention # skipped_exon 14532679-14533569 (orient:+) max_ev_support = 3 # retained_exon 14532929-14532976 (orient:+) max_ev_support = 3 scaffold_11 + retained_exons 14532929-14532976 asmbl_6067 scaffold_11 + intron_skips_exon 14532679-14533569 asmbl_6066 // Retained and Spliced Intron # retained_intron 14532679-14532928 (orient:+) max_ev_support = 2 # spliced_intron 14532679-14532928 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532679-14532928 asmbl_6067 scaffold_11 + retained_intron 14532679-14532928 asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6071,asmbl_6072 // Retained and Spliced Intron # retained_intron 14532679-14533569 (orient:+) max_ev_support = 2 # spliced_intron 14532679-14533569 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532679-14533569 asmbl_6066 scaffold_11 + retained_intron 14532679-14533569 asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6072 // Retained and Spliced Intron # retained_intron 14532977-14533569 (orient:+) max_ev_support = 2 # spliced_intron 14532977-14533569 (orient:+) max_ev_support = 3 scaffold_11 + intron 14532977-14533569 asmbl_6067,asmbl_6071 scaffold_11 + retained_intron 14532977-14533569 asmbl_6068,asmbl_6069,asmbl_6070,asmbl_6072 // Retained and Spliced Intron # retained_intron 14533655-14533915 (orient:+) max_ev_support = 2 # spliced_intron 14533655-14533915 (orient:+) max_ev_support = 3 scaffold_11 + intron 14533655-14533915 asmbl_6066,asmbl_6067,asmbl_6069,asmbl_6071,asmbl_6072 scaffold_11 + retained_intron 14533655-14533915 asmbl_6068,asmbl_6070 // Exon Skipping and Retention # skipped_exon 14531947-14532588 (orient:+) max_ev_support = 3 # retained_exon 14532209-14532249 (orient:+) max_ev_support = 1 scaffold_11 + retained_exons 14532209-14532249 asmbl_6070 scaffold_11 + intron_skips_exon 14531947-14532588 asmbl_6066,asmbl_6067,asmbl_6068,asmbl_6069 // Retained and Spliced Intron # retained_intron 14532250-14532588 (orient:+) max_ev_support = 1 # spliced_intron 14532250-14532588 (orient:+) max_ev_support = 1 scaffold_11 + intron 14532250-14532588 asmbl_6070,asmbl_6071 scaffold_11 + retained_intron 14532250-14532588 asmbl_6072 // Retained and Spliced Intron # retained_intron 14587104-14587452 (orient:+) max_ev_support = 1 # spliced_intron 14587104-14587452 (orient:+) max_ev_support = 1 scaffold_11 + intron 14587104-14587452 asmbl_6076,asmbl_6078 scaffold_11 + retained_intron 14587104-14587452 asmbl_6077,asmbl_6079 // Retained and Spliced Intron # retained_intron 14587104-14588383 (orient:+) max_ev_support = 1 # spliced_intron 14587104-14588383 (orient:+) max_ev_support = 2 scaffold_11 + intron 14587104-14588383 asmbl_6074 scaffold_11 + retained_intron 14587104-14588383 asmbl_6077,asmbl_6079 // Retained and Spliced Intron # retained_intron 14794936-14794956 (orient:+) max_ev_support = 1 # spliced_intron 14794936-14794956 (orient:+) max_ev_support = 1 scaffold_11 + intron 14794936-14794956 asmbl_6081 scaffold_11 + retained_intron 14794936-14794956 asmbl_6080 // Retained and Spliced Intron # retained_intron 15233086-15233289 (orient:+) max_ev_support = 1 # spliced_intron 15233086-15233289 (orient:+) max_ev_support = 2 scaffold_11 + intron 15233086-15233289 asmbl_6090 scaffold_11 + retained_intron 15233086-15233289 asmbl_6091 // Retained and Spliced Intron # retained_intron 15637023-15637151 (orient:+) max_ev_support = 1 # spliced_intron 15637023-15637151 (orient:+) max_ev_support = 2 scaffold_11 + intron 15637023-15637151 asmbl_6100 scaffold_11 + retained_intron 15637023-15637151 asmbl_6101 // Exon Skipping and Retention # skipped_exon 15711535-15711880 (orient:+) max_ev_support = 1 # retained_exon 15711620-15711750 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 15711620-15711750 asmbl_6106,asmbl_6107 scaffold_11 + intron_skips_exon 15711535-15711880 asmbl_6108 // Retained and Spliced Intron # retained_intron 16649266-16649558 (orient:+) max_ev_support = 3 # spliced_intron 16649266-16649558 (orient:+) max_ev_support = 2 scaffold_11 + intron 16649266-16649558 asmbl_6149 scaffold_11 + retained_intron 16649266-16649558 asmbl_6148 // Retained and Spliced Intron # retained_intron 16651862-16652153 (orient:+) max_ev_support = 1 # spliced_intron 16651862-16652153 (orient:+) max_ev_support = 2 scaffold_11 + intron 16651862-16652153 asmbl_6150 scaffold_11 + retained_intron 16651862-16652153 asmbl_6151,asmbl_6153 // Retained and Spliced Intron # retained_intron 16652240-16652614 (orient:+) max_ev_support = 2 # spliced_intron 16652240-16652614 (orient:+) max_ev_support = 2 scaffold_11 + intron 16652240-16652614 asmbl_6150,asmbl_6153 scaffold_11 + retained_intron 16652240-16652614 asmbl_6151 // Retained and Spliced Intron # retained_intron 16755265-16755293 (orient:+) max_ev_support = 2 # spliced_intron 16755265-16755293 (orient:+) max_ev_support = 1 scaffold_11 + intron 16755265-16755293 asmbl_6157 scaffold_11 + retained_intron 16755265-16755293 asmbl_6159 // Exon Skipping and Retention # skipped_exon 17099044-17101007 (orient:+) max_ev_support = 1 # retained_exon 17100753-17100818 (orient:+) max_ev_support = 2 scaffold_11 + retained_exons 17100753-17100818 asmbl_6175,asmbl_6176 scaffold_11 + intron_skips_exon 17099044-17101007 asmbl_6177 // Retained and Spliced Intron # retained_intron 17095575-17095790 (orient:+) max_ev_support = 2 # spliced_intron 17095575-17095790 (orient:+) max_ev_support = 2 scaffold_11 + intron 17095575-17095790 asmbl_6175 scaffold_11 + retained_intron 17095575-17095790 asmbl_6176,asmbl_6177 // Retained and Spliced Intron # retained_intron 17336336-17336476 (orient:+) max_ev_support = 2 # spliced_intron 17336336-17336476 (orient:+) max_ev_support = 3 scaffold_11 + intron 17336336-17336476 asmbl_6194 scaffold_11 + retained_intron 17336336-17336476 asmbl_6195 // Retained and Spliced Intron # retained_intron 17374697-17374848 (orient:+) max_ev_support = 2 # spliced_intron 17374697-17374848 (orient:+) max_ev_support = 2 scaffold_11 + intron 17374697-17374848 asmbl_6202,asmbl_6205 scaffold_11 + retained_intron 17374697-17374848 asmbl_6203 // Retained and Spliced Intron # retained_intron 17375833-17376038 (orient:+) max_ev_support = 2 # spliced_intron 17375833-17376038 (orient:+) max_ev_support = 2 scaffold_11 + intron 17375833-17376038 asmbl_6202,asmbl_6205 scaffold_11 + retained_intron 17375833-17376038 asmbl_6204 // Retained and Spliced Intron # retained_intron 17376092-17376187 (orient:+) max_ev_support = 2 # spliced_intron 17376092-17376187 (orient:+) max_ev_support = 2 scaffold_11 + intron 17376092-17376187 asmbl_6202,asmbl_6205 scaffold_11 + retained_intron 17376092-17376187 asmbl_6204 // Retained and Spliced Intron # retained_intron 147614-147643 (orient:-) max_ev_support = 1 # spliced_intron 147614-147643 (orient:-) max_ev_support = 1 scaffold_11 - intron 147614-147643 asmbl_6350 scaffold_11 - retained_intron 147614-147643 asmbl_6349 // Retained and Spliced Intron # retained_intron 224369-224543 (orient:-) max_ev_support = 1 # spliced_intron 224369-224543 (orient:-) max_ev_support = 1 scaffold_11 - intron 224369-224543 asmbl_6360 scaffold_11 - retained_intron 224369-224543 asmbl_6359 // Retained and Spliced Intron # retained_intron 262237-262334 (orient:-) max_ev_support = 1 # spliced_intron 262237-262334 (orient:-) max_ev_support = 2 scaffold_11 - intron 262237-262334 asmbl_6363 scaffold_11 - retained_intron 262237-262334 asmbl_6364,asmbl_6365 // Retained and Spliced Intron # retained_intron 262676-262775 (orient:-) max_ev_support = 1 # spliced_intron 262676-262775 (orient:-) max_ev_support = 2 scaffold_11 - intron 262676-262775 asmbl_6363,asmbl_6364 scaffold_11 - retained_intron 262676-262775 asmbl_6365 // Retained and Spliced Intron # retained_intron 1286462-1286567 (orient:-) max_ev_support = 1 # spliced_intron 1286462-1286567 (orient:-) max_ev_support = 2 scaffold_11 - intron 1286462-1286567 asmbl_6394 scaffold_11 - retained_intron 1286462-1286567 asmbl_6395 // Retained and Spliced Intron # retained_intron 1286686-1286928 (orient:-) max_ev_support = 1 # spliced_intron 1286686-1286928 (orient:-) max_ev_support = 2 scaffold_11 - intron 1286686-1286928 asmbl_6394 scaffold_11 - retained_intron 1286686-1286928 asmbl_6395 // Retained and Spliced Intron # retained_intron 1285094-1285198 (orient:-) max_ev_support = 1 # spliced_intron 1285094-1285198 (orient:-) max_ev_support = 2 scaffold_11 - intron 1285094-1285198 asmbl_6393,asmbl_6394,asmbl_6395 scaffold_11 - retained_intron 1285094-1285198 asmbl_6396 // Retained and Spliced Intron # retained_intron 1304892-1305131 (orient:-) max_ev_support = 2 # spliced_intron 1304892-1305131 (orient:-) max_ev_support = 2 scaffold_11 - intron 1304892-1305131 asmbl_6402,asmbl_6403 scaffold_11 - retained_intron 1304892-1305131 asmbl_6401 // Retained and Spliced Intron # retained_intron 1305168-1305286 (orient:-) max_ev_support = 2 # spliced_intron 1305168-1305286 (orient:-) max_ev_support = 2 scaffold_11 - intron 1305168-1305286 asmbl_6402 scaffold_11 - retained_intron 1305168-1305286 asmbl_6401 // Retained and Spliced Intron # retained_intron 1305199-1305286 (orient:-) max_ev_support = 2 # spliced_intron 1305199-1305286 (orient:-) max_ev_support = 1 scaffold_11 - intron 1305199-1305286 asmbl_6403 scaffold_11 - retained_intron 1305199-1305286 asmbl_6401 // Retained and Spliced Intron # retained_intron 1605150-1605247 (orient:-) max_ev_support = 1 # spliced_intron 1605150-1605247 (orient:-) max_ev_support = 1 scaffold_11 - intron 1605150-1605247 asmbl_6418 scaffold_11 - retained_intron 1605150-1605247 asmbl_6419 // Retained and Spliced Intron # retained_intron 1809111-1809270 (orient:-) max_ev_support = 1 # spliced_intron 1809111-1809270 (orient:-) max_ev_support = 1 scaffold_11 - intron 1809111-1809270 asmbl_6424 scaffold_11 - retained_intron 1809111-1809270 asmbl_6423 // Retained and Spliced Intron # retained_intron 1981821-1981961 (orient:-) max_ev_support = 2 # spliced_intron 1981821-1981961 (orient:-) max_ev_support = 2 scaffold_11 - intron 1981821-1981961 asmbl_6435,asmbl_6437 scaffold_11 - retained_intron 1981821-1981961 asmbl_6436 // Retained and Spliced Intron # retained_intron 1982041-1982111 (orient:-) max_ev_support = 2 # spliced_intron 1982041-1982111 (orient:-) max_ev_support = 2 scaffold_11 - intron 1982041-1982111 asmbl_6435 scaffold_11 - retained_intron 1982041-1982111 asmbl_6436,asmbl_6437 // Retained and Spliced Intron # retained_intron 1983670-1983757 (orient:-) max_ev_support = 1 # spliced_intron 1983670-1983757 (orient:-) max_ev_support = 2 scaffold_11 - intron 1983670-1983757 asmbl_6438 scaffold_11 - retained_intron 1983670-1983757 asmbl_6439 // Retained and Spliced Intron # retained_intron 1983670-1984066 (orient:-) max_ev_support = 3 # spliced_intron 1983670-1984066 (orient:-) max_ev_support = 1 scaffold_11 - intron 1983670-1984066 asmbl_6440,asmbl_6441 scaffold_11 - retained_intron 1983670-1984066 asmbl_6439 // Retained and Spliced Intron # retained_intron 1983288-1983379 (orient:-) max_ev_support = 1 # spliced_intron 1983288-1983379 (orient:-) max_ev_support = 2 scaffold_11 - intron 1983288-1983379 asmbl_6438,asmbl_6439,asmbl_6440 scaffold_11 - retained_intron 1983288-1983379 asmbl_6441 // Exon Skipping and Retention # skipped_exon 2099318-2099760 (orient:-) max_ev_support = 1 # retained_exon 2099402-2099454 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 2099402-2099454 asmbl_6450,asmbl_6451,asmbl_6452 scaffold_11 - intron_skips_exon 2099318-2099760 asmbl_6453 // Exon Skipping and Retention # skipped_exon 2101081-2101441 (orient:-) max_ev_support = 2 # retained_exon 2101163-2101254 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 2101163-2101254 asmbl_6450 scaffold_11 - intron_skips_exon 2101081-2101441 asmbl_6451,asmbl_6453 // Retained and Spliced Intron # retained_intron 2101255-2101441 (orient:-) max_ev_support = 2 # spliced_intron 2101255-2101441 (orient:-) max_ev_support = 2 scaffold_11 - intron 2101255-2101441 asmbl_6450 scaffold_11 - retained_intron 2101255-2101441 asmbl_6452 // Retained and Spliced Intron # retained_intron 2446142-2446175 (orient:-) max_ev_support = 3 # spliced_intron 2446142-2446175 (orient:-) max_ev_support = 1 scaffold_11 - intron 2446142-2446175 asmbl_6480 scaffold_11 - retained_intron 2446142-2446175 asmbl_6478,asmbl_6479 // Retained and Spliced Intron # retained_intron 2500321-2500474 (orient:-) max_ev_support = 2 # spliced_intron 2500321-2500474 (orient:-) max_ev_support = 2 scaffold_11 - intron 2500321-2500474 asmbl_6488 scaffold_11 - retained_intron 2500321-2500474 asmbl_6487 // Retained and Spliced Intron # retained_intron 2500321-2500529 (orient:-) max_ev_support = 2 # spliced_intron 2500321-2500529 (orient:-) max_ev_support = 1 scaffold_11 - intron 2500321-2500529 asmbl_6489 scaffold_11 - retained_intron 2500321-2500529 asmbl_6487 // Exon Skipping and Retention # skipped_exon 2845737-2846051 (orient:-) max_ev_support = 1 # retained_exon 2845822-2845940 (orient:-) max_ev_support = 5 scaffold_11 - retained_exons 2845822-2845940 asmbl_6494 scaffold_11 - intron_skips_exon 2845737-2846051 asmbl_6495 // Retained and Spliced Intron # retained_intron 3110813-3110881 (orient:-) max_ev_support = 2 # spliced_intron 3110813-3110881 (orient:-) max_ev_support = 2 scaffold_11 - intron 3110813-3110881 asmbl_6506 scaffold_11 - retained_intron 3110813-3110881 asmbl_6505 // Retained and Spliced Intron # retained_intron 3140143-3140263 (orient:-) max_ev_support = 2 # spliced_intron 3140143-3140263 (orient:-) max_ev_support = 2 scaffold_11 - intron 3140143-3140263 asmbl_6508 scaffold_11 - retained_intron 3140143-3140263 asmbl_6509 // Retained and Spliced Intron # retained_intron 3300926-3300997 (orient:-) max_ev_support = 1 # spliced_intron 3300926-3300997 (orient:-) max_ev_support = 2 scaffold_11 - intron 3300926-3300997 asmbl_6525 scaffold_11 - retained_intron 3300926-3300997 asmbl_6526 // Exon Skipping and Retention # skipped_exon 3556958-3559422 (orient:-) max_ev_support = 1 # retained_exon 3558136-3558269 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 3558136-3558269 asmbl_6528,asmbl_6529 scaffold_11 - intron_skips_exon 3556958-3559422 asmbl_6530 // Exon Skipping and Retention # skipped_exon 3607163-3608883 (orient:-) max_ev_support = 2 # retained_exon 3607603-3607716 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 3607603-3607716 asmbl_6535 scaffold_11 - intron_skips_exon 3607163-3608883 asmbl_6534 // Retained and Spliced Intron # retained_intron 3767796-3767816 (orient:-) max_ev_support = 1 # spliced_intron 3767796-3767816 (orient:-) max_ev_support = 1 scaffold_11 - intron 3767796-3767816 asmbl_6556 scaffold_11 - retained_intron 3767796-3767816 asmbl_6553,asmbl_6554 // Retained and Spliced Intron # retained_intron 3767045-3767446 (orient:-) max_ev_support = 1 # spliced_intron 3767045-3767446 (orient:-) max_ev_support = 2 scaffold_11 - intron 3767045-3767446 asmbl_6551,asmbl_6553,asmbl_6555,asmbl_6556,asmbl_6557 scaffold_11 - retained_intron 3767045-3767446 asmbl_6554 // Exon Skipping and Retention # skipped_exon 3767492-3770068 (orient:-) max_ev_support = 2 # retained_exon 3768626-3768939 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 3768626-3768679,3768860-3768939 asmbl_6555 scaffold_11 - intron_skips_exon 3767492-3770068 asmbl_6551,asmbl_6557 // Exon Skipping and Retention # skipped_exon 4332758-4334217 (orient:-) max_ev_support = 2 # retained_exon 4333202-4333222 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 4333202-4333222 asmbl_6575 scaffold_11 - intron_skips_exon 4332758-4334217 asmbl_6573,asmbl_6574 // Exon Skipping and Retention # skipped_exon 4672046-4673293 (orient:-) max_ev_support = 2 # retained_exon 4672820-4673002 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 4672820-4673002 asmbl_6586,asmbl_6590 scaffold_11 - intron_skips_exon 4672046-4673293 asmbl_6585,asmbl_6587,asmbl_6588,asmbl_6591,asmbl_6592 // Exon Skipping and Retention # skipped_exon 4674969-4676447 (orient:-) max_ev_support = 2 # retained_exon 4675629-4675850 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 4675629-4675850 asmbl_6586,asmbl_6591 scaffold_11 - intron_skips_exon 4674969-4676447 asmbl_6585,asmbl_6587,asmbl_6588 // Retained and Spliced Intron # retained_intron 4744838-4745154 (orient:-) max_ev_support = 1 # spliced_intron 4744838-4745154 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744838-4745154 asmbl_6599 scaffold_11 - retained_intron 4744838-4745154 asmbl_6600 // Retained and Spliced Intron # retained_intron 4744838-4745192 (orient:-) max_ev_support = 1 # spliced_intron 4744838-4745192 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744838-4745192 asmbl_6598,asmbl_6601,asmbl_6602,asmbl_6603 scaffold_11 - retained_intron 4744838-4745192 asmbl_6600 // Retained and Spliced Intron # retained_intron 4745326-4745491 (orient:-) max_ev_support = 1 # spliced_intron 4745326-4745491 (orient:-) max_ev_support = 2 scaffold_11 - intron 4745326-4745491 asmbl_6598,asmbl_6599,asmbl_6601,asmbl_6602,asmbl_6603 scaffold_11 - retained_intron 4745326-4745491 asmbl_6600 // Retained and Spliced Intron # retained_intron 4744010-4744101 (orient:-) max_ev_support = 1 # spliced_intron 4744010-4744101 (orient:-) max_ev_support = 2 scaffold_11 - intron 4744010-4744101 asmbl_6598,asmbl_6599,asmbl_6600,asmbl_6601 scaffold_11 - retained_intron 4744010-4744101 asmbl_6602 // Retained and Spliced Intron # retained_intron 4760580-4761026 (orient:-) max_ev_support = 1 # spliced_intron 4760580-4761026 (orient:-) max_ev_support = 2 scaffold_11 - intron 4760580-4761026 asmbl_6605,asmbl_6608 scaffold_11 - retained_intron 4760580-4761026 asmbl_6606 // Retained and Spliced Intron # retained_intron 4759832-4760026 (orient:-) max_ev_support = 1 # spliced_intron 4759832-4760026 (orient:-) max_ev_support = 2 scaffold_11 - intron 4759832-4760026 asmbl_6605,asmbl_6606,asmbl_6608 scaffold_11 - retained_intron 4759832-4760026 asmbl_6607 // Retained and Spliced Intron # retained_intron 4759244-4759351 (orient:-) max_ev_support = 1 # spliced_intron 4759244-4759351 (orient:-) max_ev_support = 2 scaffold_11 - intron 4759244-4759351 asmbl_6605,asmbl_6606,asmbl_6607 scaffold_11 - retained_intron 4759244-4759351 asmbl_6608 // Retained and Spliced Intron # retained_intron 4870477-4870559 (orient:-) max_ev_support = 1 # spliced_intron 4870477-4870559 (orient:-) max_ev_support = 2 scaffold_11 - intron 4870477-4870559 asmbl_6619 scaffold_11 - retained_intron 4870477-4870559 asmbl_6620 // Retained and Spliced Intron # retained_intron 5501775-5501898 (orient:-) max_ev_support = 1 # spliced_intron 5501775-5501898 (orient:-) max_ev_support = 1 scaffold_11 - intron 5501775-5501898 asmbl_6641 scaffold_11 - retained_intron 5501775-5501898 asmbl_6642,asmbl_6643 // Retained and Spliced Intron # retained_intron 5501775-5502119 (orient:-) max_ev_support = 1 # spliced_intron 5501775-5502119 (orient:-) max_ev_support = 2 scaffold_11 - intron 5501775-5502119 asmbl_6640 scaffold_11 - retained_intron 5501775-5502119 asmbl_6642,asmbl_6643 // Retained and Spliced Intron # retained_intron 5821149-5821247 (orient:-) max_ev_support = 1 # spliced_intron 5821149-5821247 (orient:-) max_ev_support = 2 scaffold_11 - intron 5821149-5821247 asmbl_6655 scaffold_11 - retained_intron 5821149-5821247 asmbl_6656 // Retained and Spliced Intron # retained_intron 5868618-5868758 (orient:-) max_ev_support = 2 # spliced_intron 5868618-5868758 (orient:-) max_ev_support = 2 scaffold_11 - intron 5868618-5868758 asmbl_6661 scaffold_11 - retained_intron 5868618-5868758 asmbl_6662,asmbl_6664 // Retained and Spliced Intron # retained_intron 6138503-6138584 (orient:-) max_ev_support = 1 # spliced_intron 6138503-6138584 (orient:-) max_ev_support = 2 scaffold_11 - intron 6138503-6138584 asmbl_6675,asmbl_6677 scaffold_11 - retained_intron 6138503-6138584 asmbl_6676 // Retained and Spliced Intron # retained_intron 6395847-6395959 (orient:-) max_ev_support = 3 # spliced_intron 6395847-6395959 (orient:-) max_ev_support = 3 scaffold_11 - intron 6395847-6395959 asmbl_6683,asmbl_6685 scaffold_11 - retained_intron 6395847-6395959 asmbl_6682,asmbl_6686 // Retained and Spliced Intron # retained_intron 6534474-6535499 (orient:-) max_ev_support = 2 # spliced_intron 6534474-6535499 (orient:-) max_ev_support = 2 scaffold_11 - intron 6534474-6535499 asmbl_6694 scaffold_11 - retained_intron 6534474-6535499 asmbl_6695 // Exon Skipping and Retention # skipped_exon 6591255-6592422 (orient:-) max_ev_support = 1 # retained_exon 6591304-6591394 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6591304-6591394 asmbl_6699,asmbl_6700 scaffold_11 - intron_skips_exon 6591255-6592422 asmbl_6701 // Exon Skipping and Retention # skipped_exon 6613828-6615052 (orient:-) max_ev_support = 2 # retained_exon 6614791-6614888 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6614791-6614888 asmbl_6703 scaffold_11 - intron_skips_exon 6613828-6615052 asmbl_6704 // Exon Skipping and Retention # skipped_exon 6711357-6713812 (orient:-) max_ev_support = 1 # retained_exon 6711498-6713217 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 6711498-6711536,6711975-6712072,6712223-6712390,6712588-6712653,6713121-6713217 asmbl_6712,asmbl_6713,asmbl_6717 scaffold_11 - retained_exons 6711498-6711536,6711975-6712069,6712223-6712390,6712588-6712653,6713121-6713217 asmbl_6715 scaffold_11 - intron_skips_exon 6711357-6713812 asmbl_6714 // Retained and Spliced Intron # retained_intron 6952071-6952149 (orient:-) max_ev_support = 2 # spliced_intron 6952071-6952149 (orient:-) max_ev_support = 2 scaffold_11 - intron 6952071-6952149 asmbl_6723 scaffold_11 - retained_intron 6952071-6952149 asmbl_6724,asmbl_6725,asmbl_6726,asmbl_6727 // Retained and Spliced Intron # retained_intron 6952172-6952274 (orient:-) max_ev_support = 2 # spliced_intron 6952172-6952274 (orient:-) max_ev_support = 2 scaffold_11 - intron 6952172-6952274 asmbl_6723,asmbl_6725,asmbl_6726 scaffold_11 - retained_intron 6952172-6952274 asmbl_6724,asmbl_6727 // Retained and Spliced Intron # retained_intron 8014909-8015006 (orient:-) max_ev_support = 1 # spliced_intron 8014909-8015006 (orient:-) max_ev_support = 2 scaffold_11 - intron 8014909-8015006 asmbl_6792 scaffold_11 - retained_intron 8014909-8015006 asmbl_6793 // Retained and Spliced Intron # retained_intron 8040872-8040989 (orient:-) max_ev_support = 1 # spliced_intron 8040872-8040989 (orient:-) max_ev_support = 2 scaffold_11 - intron 8040872-8040989 asmbl_6794 scaffold_11 - retained_intron 8040872-8040989 asmbl_6795 // Exon Skipping and Retention # skipped_exon 8079062-8079347 (orient:-) max_ev_support = 2 # retained_exon 8079171-8079244 (orient:-) max_ev_support = 3 scaffold_11 - retained_exons 8079171-8079244 asmbl_6800,asmbl_6802,asmbl_6805,asmbl_6806,asmbl_6808,asmbl_6817 scaffold_11 - intron_skips_exon 8079062-8079347 asmbl_6804,asmbl_6809,asmbl_6812,asmbl_6814,asmbl_6815,asmbl_6816 // Retained and Spliced Intron # retained_intron 8072873-8072982 (orient:-) max_ev_support = 2 # spliced_intron 8072873-8072982 (orient:-) max_ev_support = 3 scaffold_11 - intron 8072873-8072982 asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6811,asmbl_6815 scaffold_11 - retained_intron 8072873-8072982 asmbl_6802,asmbl_6812 // Retained and Spliced Intron # retained_intron 8073049-8073152 (orient:-) max_ev_support = 2 # spliced_intron 8073049-8073152 (orient:-) max_ev_support = 3 scaffold_11 - intron 8073049-8073152 asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6815 scaffold_11 - retained_intron 8073049-8073152 asmbl_6802,asmbl_6811,asmbl_6812 // Retained and Spliced Intron # retained_intron 8073261-8073486 (orient:-) max_ev_support = 2 # spliced_intron 8073261-8073486 (orient:-) max_ev_support = 3 scaffold_11 - intron 8073261-8073486 asmbl_6800,asmbl_6801,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6815 scaffold_11 - retained_intron 8073261-8073486 asmbl_6802,asmbl_6812 // Retained and Spliced Intron # retained_intron 8074409-8074589 (orient:-) max_ev_support = 1 # spliced_intron 8074409-8074589 (orient:-) max_ev_support = 3 scaffold_11 - intron 8074409-8074589 asmbl_6800,asmbl_6801,asmbl_6802,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6812 scaffold_11 - retained_intron 8074409-8074589 asmbl_6806,asmbl_6815,asmbl_6817 // Retained and Spliced Intron # retained_intron 8075675-8075767 (orient:-) max_ev_support = 1 # spliced_intron 8075675-8075767 (orient:-) max_ev_support = 3 scaffold_11 - intron 8075675-8075767 asmbl_6800,asmbl_6801,asmbl_6802,asmbl_6803,asmbl_6804,asmbl_6805,asmbl_6806,asmbl_6812,asmbl_6815 scaffold_11 - retained_intron 8075675-8075767 asmbl_6817 // Retained and Spliced Intron # retained_intron 8085021-8085159 (orient:-) max_ev_support = 2 # spliced_intron 8085021-8085159 (orient:-) max_ev_support = 3 scaffold_11 - intron 8085021-8085159 asmbl_6818 scaffold_11 - retained_intron 8085021-8085159 asmbl_6819 // Retained and Spliced Intron # retained_intron 8192814-8192909 (orient:-) max_ev_support = 2 # spliced_intron 8192814-8192909 (orient:-) max_ev_support = 3 scaffold_11 - intron 8192814-8192909 asmbl_6833 scaffold_11 - retained_intron 8192814-8192909 asmbl_6834 // Retained and Spliced Intron # retained_intron 8192814-8192980 (orient:-) max_ev_support = 2 # spliced_intron 8192814-8192980 (orient:-) max_ev_support = 3 scaffold_11 - intron 8192814-8192980 asmbl_6832 scaffold_11 - retained_intron 8192814-8192980 asmbl_6834 // Retained and Spliced Intron # retained_intron 8330044-8330165 (orient:-) max_ev_support = 3 # spliced_intron 8330044-8330165 (orient:-) max_ev_support = 3 scaffold_11 - intron 8330044-8330165 asmbl_6838 scaffold_11 - retained_intron 8330044-8330165 asmbl_6839 // Retained and Spliced Intron # retained_intron 8716691-8716938 (orient:-) max_ev_support = 2 # spliced_intron 8716691-8716938 (orient:-) max_ev_support = 2 scaffold_11 - intron 8716691-8716938 asmbl_6853,asmbl_6858 scaffold_11 - retained_intron 8716691-8716938 asmbl_6854 // Retained and Spliced Intron # retained_intron 8719314-8719523 (orient:-) max_ev_support = 2 # spliced_intron 8719314-8719523 (orient:-) max_ev_support = 2 scaffold_11 - intron 8719314-8719523 asmbl_6857 scaffold_11 - retained_intron 8719314-8719523 asmbl_6856 // Retained and Spliced Intron # retained_intron 8716123-8716595 (orient:-) max_ev_support = 1 # spliced_intron 8716123-8716595 (orient:-) max_ev_support = 2 scaffold_11 - intron 8716123-8716595 asmbl_6853 scaffold_11 - retained_intron 8716123-8716595 asmbl_6858 // Retained and Spliced Intron # retained_intron 8790267-8790289 (orient:-) max_ev_support = 1 # spliced_intron 8790267-8790289 (orient:-) max_ev_support = 1 scaffold_11 - intron 8790267-8790289 asmbl_6860 scaffold_11 - retained_intron 8790267-8790289 asmbl_6859 // Retained and Spliced Intron # retained_intron 8790313-8790358 (orient:-) max_ev_support = 1 # spliced_intron 8790313-8790358 (orient:-) max_ev_support = 1 scaffold_11 - intron 8790313-8790358 asmbl_6859 scaffold_11 - retained_intron 8790313-8790358 asmbl_6860 // Exon Skipping and Retention # skipped_exon 8896235-8898169 (orient:-) max_ev_support = 1 # retained_exon 8896441-8896553 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 8896441-8896553 asmbl_6866 scaffold_11 - intron_skips_exon 8896235-8898169 asmbl_6867 // Exon Skipping and Retention # skipped_exon 8896554-8898836 (orient:-) max_ev_support = 1 # retained_exon 8898170-8898282 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 8898170-8898282 asmbl_6867 scaffold_11 - intron_skips_exon 8896554-8898836 asmbl_6866 // Retained and Spliced Intron # retained_intron 9018053-9018198 (orient:-) max_ev_support = 2 # spliced_intron 9018053-9018198 (orient:-) max_ev_support = 1 scaffold_11 - intron 9018053-9018198 asmbl_6886,asmbl_6888 scaffold_11 - retained_intron 9018053-9018198 asmbl_6885 // Retained and Spliced Intron # retained_intron 9018627-9018713 (orient:-) max_ev_support = 2 # spliced_intron 9018627-9018713 (orient:-) max_ev_support = 2 scaffold_11 - intron 9018627-9018713 asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6889,asmbl_6890 scaffold_11 - retained_intron 9018627-9018713 asmbl_6887 // Retained and Spliced Intron # retained_intron 9018786-9019232 (orient:-) max_ev_support = 2 # spliced_intron 9018786-9019232 (orient:-) max_ev_support = 2 scaffold_11 - intron 9018786-9019232 asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6889,asmbl_6890 scaffold_11 - retained_intron 9018786-9019232 asmbl_6887 // Retained and Spliced Intron # retained_intron 9021079-9021443 (orient:-) max_ev_support = 1 # spliced_intron 9021079-9021443 (orient:-) max_ev_support = 2 scaffold_11 - intron 9021079-9021443 asmbl_6885,asmbl_6886,asmbl_6889,asmbl_6890 scaffold_11 - retained_intron 9021079-9021443 asmbl_6888 // Retained and Spliced Intron # retained_intron 9020369-9020489 (orient:-) max_ev_support = 1 # spliced_intron 9020369-9020489 (orient:-) max_ev_support = 2 scaffold_11 - intron 9020369-9020489 asmbl_6885,asmbl_6886,asmbl_6888,asmbl_6890 scaffold_11 - retained_intron 9020369-9020489 asmbl_6889 // Retained and Spliced Intron # retained_intron 9083178-9083266 (orient:-) max_ev_support = 3 # spliced_intron 9083178-9083266 (orient:-) max_ev_support = 1 scaffold_11 - intron 9083178-9083266 asmbl_6895,asmbl_6896 scaffold_11 - retained_intron 9083178-9083266 asmbl_6894 // Retained and Spliced Intron # retained_intron 9185416-9185879 (orient:-) max_ev_support = 2 # spliced_intron 9185416-9185879 (orient:-) max_ev_support = 3 scaffold_11 - intron 9185416-9185879 asmbl_6903 scaffold_11 - retained_intron 9185416-9185879 asmbl_6904 // Exon Skipping and Retention # skipped_exon 9652425-9653452 (orient:-) max_ev_support = 1 # retained_exon 9652909-9652941 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 9652909-9652941 asmbl_6925,asmbl_6927 scaffold_11 - intron_skips_exon 9652425-9653452 asmbl_6926 // Retained and Spliced Intron # retained_intron 9680424-9680534 (orient:-) max_ev_support = 2 # spliced_intron 9680424-9680534 (orient:-) max_ev_support = 2 scaffold_11 - intron 9680424-9680534 asmbl_6930 scaffold_11 - retained_intron 9680424-9680534 asmbl_6929 // Exon Skipping and Retention # skipped_exon 9699517-9700110 (orient:-) max_ev_support = 3 # retained_exon 9699752-9699802 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 9699752-9699802 asmbl_6936 scaffold_11 - intron_skips_exon 9699517-9700110 asmbl_6934 // Retained and Spliced Intron # retained_intron 9950767-9950860 (orient:-) max_ev_support = 1 # spliced_intron 9950767-9950860 (orient:-) max_ev_support = 1 scaffold_11 - intron 9950767-9950860 asmbl_6950 scaffold_11 - retained_intron 9950767-9950860 asmbl_6949 // Retained and Spliced Intron # retained_intron 9950772-9950860 (orient:-) max_ev_support = 1 # spliced_intron 9950772-9950860 (orient:-) max_ev_support = 2 scaffold_11 - intron 9950772-9950860 asmbl_6948 scaffold_11 - retained_intron 9950772-9950860 asmbl_6949 // Retained and Spliced Intron # retained_intron 10144217-10144522 (orient:-) max_ev_support = 1 # spliced_intron 10144217-10144522 (orient:-) max_ev_support = 1 scaffold_11 - intron 10144217-10144522 asmbl_6962 scaffold_11 - retained_intron 10144217-10144522 asmbl_6961,asmbl_6963 // Retained and Spliced Intron # retained_intron 10145073-10145116 (orient:-) max_ev_support = 1 # spliced_intron 10145073-10145116 (orient:-) max_ev_support = 1 scaffold_11 - intron 10145073-10145116 asmbl_6962,asmbl_6963 scaffold_11 - retained_intron 10145073-10145116 asmbl_6961 // Retained and Spliced Intron # retained_intron 10981902-10982289 (orient:-) max_ev_support = 3 # spliced_intron 10981902-10982289 (orient:-) max_ev_support = 1 scaffold_11 - intron 10981902-10982289 asmbl_6988 scaffold_11 - retained_intron 10981902-10982289 asmbl_6987 // Retained and Spliced Intron # retained_intron 10981968-10982289 (orient:-) max_ev_support = 3 # spliced_intron 10981968-10982289 (orient:-) max_ev_support = 1 scaffold_11 - intron 10981968-10982289 asmbl_6989 scaffold_11 - retained_intron 10981968-10982289 asmbl_6987 // Retained and Spliced Intron # retained_intron 11069659-11070082 (orient:-) max_ev_support = 1 # spliced_intron 11069659-11070082 (orient:-) max_ev_support = 2 scaffold_11 - intron 11069659-11070082 asmbl_6994 scaffold_11 - retained_intron 11069659-11070082 asmbl_6995 // Exon Skipping and Retention # skipped_exon 11930763-11931395 (orient:-) max_ev_support = 1 # retained_exon 11931003-11931261 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11931003-11931047,11931220-11931261 asmbl_7019,asmbl_7022,asmbl_7023 scaffold_11 - intron_skips_exon 11930763-11931395 asmbl_7021 // Exon Skipping and Retention # skipped_exon 11936507-11937127 (orient:-) max_ev_support = 1 # retained_exon 11936634-11936714 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11936634-11936714 asmbl_7019,asmbl_7022 scaffold_11 - intron_skips_exon 11936507-11937127 asmbl_7021 // Exon Skipping and Retention # skipped_exon 11936610-11936927 (orient:-) max_ev_support = 1 # retained_exon 11936634-11936714 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11936634-11936714 asmbl_7019,asmbl_7022 scaffold_11 - intron_skips_exon 11936610-11936927 asmbl_7023 // Exon Skipping and Retention # skipped_exon 11936610-11938201 (orient:-) max_ev_support = 1 # retained_exon 11936634-11937722 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 11936634-11936714,11937033-11937350,11937510-11937722 asmbl_7019 scaffold_11 - retained_exons 11936634-11936714,11937033-11937191,11937510-11937722 asmbl_7022 scaffold_11 - intron_skips_exon 11936610-11938201 asmbl_7020 // Exon Skipping and Retention # skipped_exon 11943634-11944952 (orient:-) max_ev_support = 1 # retained_exon 11943840-11944315 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 11943840-11943938,11944172-11944315 asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029 scaffold_11 - intron_skips_exon 11943634-11944952 asmbl_7020 // Retained and Spliced Intron # retained_intron 11930763-11931002 (orient:-) max_ev_support = 1 # spliced_intron 11930763-11931002 (orient:-) max_ev_support = 1 scaffold_11 - intron 11930763-11931002 asmbl_7019,asmbl_7022,asmbl_7023 scaffold_11 - retained_intron 11930763-11931002 asmbl_7020,asmbl_7031 // Retained and Spliced Intron # retained_intron 11943939-11944171 (orient:-) max_ev_support = 2 # spliced_intron 11943939-11944171 (orient:-) max_ev_support = 2 scaffold_11 - intron 11943939-11944171 asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029 scaffold_11 - retained_intron 11943939-11944171 asmbl_7026 // Retained and Spliced Intron # retained_intron 11943634-11943839 (orient:-) max_ev_support = 2 # spliced_intron 11943634-11943839 (orient:-) max_ev_support = 2 scaffold_11 - intron 11943634-11943839 asmbl_7019,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029 scaffold_11 - retained_intron 11943634-11943839 asmbl_7027 // Retained and Spliced Intron # retained_intron 11943331-11943516 (orient:-) max_ev_support = 2 # spliced_intron 11943331-11943516 (orient:-) max_ev_support = 2 scaffold_11 - intron 11943331-11943516 asmbl_7019,asmbl_7020,asmbl_7021,asmbl_7022,asmbl_7023,asmbl_7029 scaffold_11 - retained_intron 11943331-11943516 asmbl_7028 // Retained and Spliced Intron # retained_intron 11996973-11997304 (orient:-) max_ev_support = 3 # spliced_intron 11996973-11997304 (orient:-) max_ev_support = 3 scaffold_11 - intron 11996973-11997304 asmbl_7036,asmbl_7037,asmbl_7038,asmbl_7039 scaffold_11 - retained_intron 11996973-11997304 asmbl_7035 // Retained and Spliced Intron # retained_intron 11997492-11997906 (orient:-) max_ev_support = 3 # spliced_intron 11997492-11997906 (orient:-) max_ev_support = 3 scaffold_11 - intron 11997492-11997906 asmbl_7036,asmbl_7037,asmbl_7038,asmbl_7039 scaffold_11 - retained_intron 11997492-11997906 asmbl_7035 // Retained and Spliced Intron # retained_intron 11999468-11999662 (orient:-) max_ev_support = 3 # spliced_intron 11999468-11999662 (orient:-) max_ev_support = 2 scaffold_11 - intron 11999468-11999662 asmbl_7039 scaffold_11 - retained_intron 11999468-11999662 asmbl_7037 // Retained and Spliced Intron # retained_intron 12377973-12378067 (orient:-) max_ev_support = 1 # spliced_intron 12377973-12378067 (orient:-) max_ev_support = 2 scaffold_11 - intron 12377973-12378067 asmbl_7063 scaffold_11 - retained_intron 12377973-12378067 asmbl_7064 // Exon Skipping and Retention # skipped_exon 12904181-12904897 (orient:-) max_ev_support = 1 # retained_exon 12904599-12904706 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 12904599-12904706 asmbl_7082 scaffold_11 - intron_skips_exon 12904181-12904897 asmbl_7081,asmbl_7085 // Retained and Spliced Intron # retained_intron 13035297-13035575 (orient:-) max_ev_support = 3 # spliced_intron 13035297-13035575 (orient:-) max_ev_support = 1 scaffold_11 - intron 13035297-13035575 asmbl_7095,asmbl_7097 scaffold_11 - retained_intron 13035297-13035575 asmbl_7092 // Retained and Spliced Intron # retained_intron 13035297-13036295 (orient:-) max_ev_support = 3 # spliced_intron 13035297-13036295 (orient:-) max_ev_support = 2 scaffold_11 - intron 13035297-13036295 asmbl_7094,asmbl_7096 scaffold_11 - retained_intron 13035297-13036295 asmbl_7092 // Retained and Spliced Intron # retained_intron 13035748-13036295 (orient:-) max_ev_support = 3 # spliced_intron 13035748-13036295 (orient:-) max_ev_support = 1 scaffold_11 - intron 13035748-13036295 asmbl_7095 scaffold_11 - retained_intron 13035748-13036295 asmbl_7092,asmbl_7097 // Exon Skipping and Retention # skipped_exon 13035297-13036295 (orient:-) max_ev_support = 2 # retained_exon 13035576-13035747 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 13035576-13035747 asmbl_7095 scaffold_11 - intron_skips_exon 13035297-13036295 asmbl_7094,asmbl_7096 // Retained and Spliced Intron # retained_intron 13033062-13033309 (orient:-) max_ev_support = 1 # spliced_intron 13033062-13033309 (orient:-) max_ev_support = 2 scaffold_11 - intron 13033062-13033309 asmbl_7092,asmbl_7093,asmbl_7094,asmbl_7095,asmbl_7097 scaffold_11 - retained_intron 13033062-13033309 asmbl_7096 // Retained and Spliced Intron # retained_intron 13252736-13252829 (orient:-) max_ev_support = 3 # spliced_intron 13252736-13252829 (orient:-) max_ev_support = 2 scaffold_11 - intron 13252736-13252829 asmbl_7104,asmbl_7105,asmbl_7106 scaffold_11 - retained_intron 13252736-13252829 asmbl_7103 // Retained and Spliced Intron # retained_intron 13252911-13254374 (orient:-) max_ev_support = 2 # spliced_intron 13252911-13254374 (orient:-) max_ev_support = 2 scaffold_11 - intron 13252911-13254374 asmbl_7104 scaffold_11 - retained_intron 13252911-13254374 asmbl_7105 // Retained and Spliced Intron # retained_intron 13254292-13254374 (orient:-) max_ev_support = 2 # spliced_intron 13254292-13254374 (orient:-) max_ev_support = 1 scaffold_11 - intron 13254292-13254374 asmbl_7103,asmbl_7106 scaffold_11 - retained_intron 13254292-13254374 asmbl_7105 // Retained and Spliced Intron # retained_intron 13462843-13463131 (orient:-) max_ev_support = 3 # spliced_intron 13462843-13463131 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462843-13463131 asmbl_7107 scaffold_11 - retained_intron 13462843-13463131 asmbl_7108,asmbl_7109 // Retained and Spliced Intron # retained_intron 13462527-13462704 (orient:-) max_ev_support = 2 # spliced_intron 13462527-13462704 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462527-13462704 asmbl_7107,asmbl_7108 scaffold_11 - retained_intron 13462527-13462704 asmbl_7109 // Retained and Spliced Intron # retained_intron 13462735-13462822 (orient:-) max_ev_support = 2 # spliced_intron 13462735-13462822 (orient:-) max_ev_support = 3 scaffold_11 - intron 13462735-13462822 asmbl_7107,asmbl_7108 scaffold_11 - retained_intron 13462735-13462822 asmbl_7109 // Exon Skipping and Retention # skipped_exon 13576442-13579141 (orient:-) max_ev_support = 2 # retained_exon 13578959-13579057 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 13578959-13579057 asmbl_7122 scaffold_11 - intron_skips_exon 13576442-13579141 asmbl_7119,asmbl_7120 // Retained and Spliced Intron # retained_intron 13593204-13593300 (orient:-) max_ev_support = 3 # spliced_intron 13593204-13593300 (orient:-) max_ev_support = 1 scaffold_11 - intron 13593204-13593300 asmbl_7125 scaffold_11 - retained_intron 13593204-13593300 asmbl_7124,asmbl_7126 // Retained and Spliced Intron # retained_intron 13593399-13593726 (orient:-) max_ev_support = 3 # spliced_intron 13593399-13593726 (orient:-) max_ev_support = 1 scaffold_11 - intron 13593399-13593726 asmbl_7125,asmbl_7126 scaffold_11 - retained_intron 13593399-13593726 asmbl_7124 // Retained and Spliced Intron # retained_intron 14119106-14119141 (orient:-) max_ev_support = 1 # spliced_intron 14119106-14119141 (orient:-) max_ev_support = 1 scaffold_11 - intron 14119106-14119141 asmbl_7133,asmbl_7134 scaffold_11 - retained_intron 14119106-14119141 asmbl_7135 // Retained and Spliced Intron # retained_intron 15653309-15653408 (orient:-) max_ev_support = 4 # spliced_intron 15653309-15653408 (orient:-) max_ev_support = 2 scaffold_11 - intron 15653309-15653408 asmbl_7178,asmbl_7179,asmbl_7181,asmbl_7182 scaffold_11 - retained_intron 15653309-15653408 asmbl_7176,asmbl_7177 // Retained and Spliced Intron # retained_intron 15655831-15655930 (orient:-) max_ev_support = 1 # spliced_intron 15655831-15655930 (orient:-) max_ev_support = 2 scaffold_11 - intron 15655831-15655930 asmbl_7176,asmbl_7177,asmbl_7179,asmbl_7181,asmbl_7182,asmbl_7183 scaffold_11 - retained_intron 15655831-15655930 asmbl_7178 // Retained and Spliced Intron # retained_intron 15656260-15657450 (orient:-) max_ev_support = 3 # spliced_intron 15656260-15657450 (orient:-) max_ev_support = 2 scaffold_11 - intron 15656260-15657450 asmbl_7176,asmbl_7177,asmbl_7179,asmbl_7181,asmbl_7182,asmbl_7183 scaffold_11 - retained_intron 15656260-15657450 asmbl_7178 // Retained and Spliced Intron # retained_intron 15653766-15653915 (orient:-) max_ev_support = 1 # spliced_intron 15653766-15653915 (orient:-) max_ev_support = 2 scaffold_11 - intron 15653766-15653915 asmbl_7176,asmbl_7177,asmbl_7178,asmbl_7179,asmbl_7181,asmbl_7182 scaffold_11 - retained_intron 15653766-15653915 asmbl_7183 // Retained and Spliced Intron # retained_intron 15687955-15688379 (orient:-) max_ev_support = 4 # spliced_intron 15687955-15688379 (orient:-) max_ev_support = 2 scaffold_11 - intron 15687955-15688379 asmbl_7189 scaffold_11 - retained_intron 15687955-15688379 asmbl_7188 // Exon Skipping and Retention # skipped_exon 16484013-16486899 (orient:-) max_ev_support = 1 # retained_exon 16485120-16485279 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 16485120-16485279 asmbl_7206 scaffold_11 - intron_skips_exon 16484013-16486899 asmbl_7205 // Retained and Spliced Intron # retained_intron 17084164-17084320 (orient:-) max_ev_support = 2 # spliced_intron 17084164-17084320 (orient:-) max_ev_support = 1 scaffold_11 - intron 17084164-17084320 asmbl_7228,asmbl_7229 scaffold_11 - retained_intron 17084164-17084320 asmbl_7224,asmbl_7225,asmbl_7226,asmbl_7227 // Retained and Spliced Intron # retained_intron 17084606-17085018 (orient:-) max_ev_support = 3 # spliced_intron 17084606-17085018 (orient:-) max_ev_support = 2 scaffold_11 - intron 17084606-17085018 asmbl_7225,asmbl_7226,asmbl_7227,asmbl_7228,asmbl_7229 scaffold_11 - retained_intron 17084606-17085018 asmbl_7224 // Exon Skipping and Retention # skipped_exon 17085466-17087549 (orient:-) max_ev_support = 2 # retained_exon 17086462-17086527 (orient:-) max_ev_support = 1 scaffold_11 - retained_exons 17086462-17086527 asmbl_7224,asmbl_7229 scaffold_11 - intron_skips_exon 17085466-17087549 asmbl_7226,asmbl_7228 // Retained and Spliced Intron # retained_intron 17086528-17087549 (orient:-) max_ev_support = 1 # spliced_intron 17086528-17087549 (orient:-) max_ev_support = 2 scaffold_11 - intron 17086528-17087549 asmbl_7224,asmbl_7225,asmbl_7229 scaffold_11 - retained_intron 17086528-17087549 asmbl_7230 // Retained and Spliced Intron # retained_intron 17277488-17277700 (orient:-) max_ev_support = 2 # spliced_intron 17277488-17277700 (orient:-) max_ev_support = 1 scaffold_11 - intron 17277488-17277700 asmbl_7238 scaffold_11 - retained_intron 17277488-17277700 asmbl_7237 // Exon Skipping and Retention # skipped_exon 17293563-17294318 (orient:-) max_ev_support = 2 # retained_exon 17293756-17293837 (orient:-) max_ev_support = 2 scaffold_11 - retained_exons 17293756-17293837 asmbl_7241 scaffold_11 - intron_skips_exon 17293563-17294318 asmbl_7240 // Exon Skipping and Retention # skipped_exon 6874-7192 (orient:+) max_ev_support = 4 # retained_exon 7050-7115 (orient:+) max_ev_support = 3 scaffold_111 + retained_exons 7050-7115 asmbl_7365 scaffold_111 + intron_skips_exon 6874-7192 asmbl_7364 // Exon Skipping and Retention # skipped_exon 1785-2828 (orient:+) max_ev_support = 1 # retained_exon 2143-2244 (orient:+) max_ev_support = 2 scaffold_114 + retained_exons 2143-2244 asmbl_7378 scaffold_114 + intron_skips_exon 1785-2828 asmbl_7379 // Exon Skipping and Retention # skipped_exon 12177-13245 (orient:+) max_ev_support = 1 # retained_exon 12561-12662 (orient:+) max_ev_support = 1 scaffold_114 + retained_exons 12561-12662 asmbl_7381 scaffold_114 + intron_skips_exon 12177-13245 asmbl_7380 // Exon Skipping and Retention # skipped_exon 1346-2564 (orient:+) max_ev_support = 2 # retained_exon 2277-2370 (orient:+) max_ev_support = 1 scaffold_1150 + retained_exons 2277-2370 asmbl_7386 scaffold_1150 + intron_skips_exon 1346-2564 asmbl_7385 // Exon Skipping and Retention # skipped_exon 26480-28451 (orient:-) max_ev_support = 1 # retained_exon 26756-26881 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 26756-26881 asmbl_7400 scaffold_12 - intron_skips_exon 26480-28451 asmbl_7401 // Retained and Spliced Intron # retained_intron 101136-101235 (orient:-) max_ev_support = 1 # spliced_intron 101136-101235 (orient:-) max_ev_support = 2 scaffold_12 - intron 101136-101235 asmbl_7409 scaffold_12 - retained_intron 101136-101235 asmbl_7410 // Retained and Spliced Intron # retained_intron 110425-111191 (orient:-) max_ev_support = 2 # spliced_intron 110425-111191 (orient:-) max_ev_support = 2 scaffold_12 - intron 110425-111191 asmbl_7411 scaffold_12 - retained_intron 110425-111191 asmbl_7412 // Retained and Spliced Intron # retained_intron 1066676-1067984 (orient:-) max_ev_support = 2 # spliced_intron 1066676-1067984 (orient:-) max_ev_support = 2 scaffold_12 - intron 1066676-1067984 asmbl_7426 scaffold_12 - retained_intron 1066676-1067984 asmbl_7427,asmbl_7428 // Retained and Spliced Intron # retained_intron 1973797-1973924 (orient:-) max_ev_support = 2 # spliced_intron 1973797-1973924 (orient:-) max_ev_support = 1 scaffold_12 - intron 1973797-1973924 asmbl_7448 scaffold_12 - retained_intron 1973797-1973924 asmbl_7447 // Exon Skipping and Retention # skipped_exon 2921802-2922708 (orient:-) max_ev_support = 1 # retained_exon 2922179-2922352 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 2922179-2922352 asmbl_7465 scaffold_12 - intron_skips_exon 2921802-2922708 asmbl_7467 // Exon Skipping and Retention # skipped_exon 2926206-2928443 (orient:-) max_ev_support = 1 # retained_exon 2926610-2926726 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 2926610-2926726 asmbl_7465 scaffold_12 - intron_skips_exon 2926206-2928443 asmbl_7467 // Exon Skipping and Retention # skipped_exon 2926727-2928950 (orient:-) max_ev_support = 1 # retained_exon 2928444-2928560 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 2928444-2928560 asmbl_7467 scaffold_12 - intron_skips_exon 2926727-2928950 asmbl_7465 // Retained and Spliced Intron # retained_intron 2965837-2965925 (orient:-) max_ev_support = 2 # spliced_intron 2965837-2965925 (orient:-) max_ev_support = 2 scaffold_12 - intron 2965837-2965925 asmbl_7472 scaffold_12 - retained_intron 2965837-2965925 asmbl_7471 // Retained and Spliced Intron # retained_intron 2987278-2987365 (orient:-) max_ev_support = 2 # spliced_intron 2987278-2987365 (orient:-) max_ev_support = 1 scaffold_12 - intron 2987278-2987365 asmbl_7475 scaffold_12 - retained_intron 2987278-2987365 asmbl_7474 // Retained and Spliced Intron # retained_intron 2984860-2985625 (orient:-) max_ev_support = 2 # spliced_intron 2984860-2985625 (orient:-) max_ev_support = 2 scaffold_12 - intron 2984860-2985625 asmbl_7474,asmbl_7475 scaffold_12 - retained_intron 2984860-2985625 asmbl_7476 // Exon Skipping and Retention # skipped_exon 3008296-3009494 (orient:-) max_ev_support = 1 # retained_exon 3008647-3008798 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 3008647-3008798 asmbl_7479 scaffold_12 - intron_skips_exon 3008296-3009494 asmbl_7480 // Exon Skipping and Retention # skipped_exon 3008799-3009809 (orient:-) max_ev_support = 2 # retained_exon 3009495-3009646 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 3009495-3009646 asmbl_7480 scaffold_12 - intron_skips_exon 3008799-3009809 asmbl_7479 // Exon Skipping and Retention # skipped_exon 3215826-3218027 (orient:-) max_ev_support = 2 # retained_exon 3216288-3216509 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 3216288-3216509 asmbl_7484 scaffold_12 - intron_skips_exon 3215826-3218027 asmbl_7485 // Retained and Spliced Intron # retained_intron 3326235-3326361 (orient:-) max_ev_support = 2 # spliced_intron 3326235-3326361 (orient:-) max_ev_support = 2 scaffold_12 - intron 3326235-3326361 asmbl_7487 scaffold_12 - retained_intron 3326235-3326361 asmbl_7488 // Exon Skipping and Retention # skipped_exon 4201205-4201733 (orient:-) max_ev_support = 1 # retained_exon 4201513-4201605 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4201513-4201605 asmbl_7516 scaffold_12 - intron_skips_exon 4201205-4201733 asmbl_7518 // Retained and Spliced Intron # retained_intron 4290876-4291432 (orient:-) max_ev_support = 1 # spliced_intron 4290876-4291432 (orient:-) max_ev_support = 2 scaffold_12 - intron 4290876-4291432 asmbl_7519 scaffold_12 - retained_intron 4290876-4291432 asmbl_7520,asmbl_7522 // Retained and Spliced Intron # retained_intron 4549036-4549126 (orient:-) max_ev_support = 1 # spliced_intron 4549036-4549126 (orient:-) max_ev_support = 2 scaffold_12 - intron 4549036-4549126 asmbl_7534 scaffold_12 - retained_intron 4549036-4549126 asmbl_7535 // Exon Skipping and Retention # skipped_exon 4558127-4560176 (orient:-) max_ev_support = 1 # retained_exon 4559127-4559150 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4559127-4559150 asmbl_7536 scaffold_12 - intron_skips_exon 4558127-4560176 asmbl_7537 // Exon Skipping and Retention # skipped_exon 4609577-4610289 (orient:-) max_ev_support = 1 # retained_exon 4610037-4610122 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4610037-4610122 asmbl_7547,asmbl_7548,asmbl_7550 scaffold_12 - intron_skips_exon 4609577-4610289 asmbl_7549,asmbl_7551 // Retained and Spliced Intron # retained_intron 4617396-4617716 (orient:-) max_ev_support = 2 # spliced_intron 4617396-4617716 (orient:-) max_ev_support = 3 scaffold_12 - intron 4617396-4617716 asmbl_7556,asmbl_7557,asmbl_7559 scaffold_12 - retained_intron 4617396-4617716 asmbl_7558 // Retained and Spliced Intron # retained_intron 4623882-4625218 (orient:-) max_ev_support = 5 # spliced_intron 4623882-4625218 (orient:-) max_ev_support = 1 scaffold_12 - intron 4623882-4625218 asmbl_7561,asmbl_7562 scaffold_12 - retained_intron 4623882-4625218 asmbl_7560 // Retained and Spliced Intron # retained_intron 4720907-4720996 (orient:-) max_ev_support = 2 # spliced_intron 4720907-4720996 (orient:-) max_ev_support = 1 scaffold_12 - intron 4720907-4720996 asmbl_7566,asmbl_7567,asmbl_7568,asmbl_7569 scaffold_12 - retained_intron 4720907-4720996 asmbl_7565 // Retained and Spliced Intron # retained_intron 4721064-4721689 (orient:-) max_ev_support = 1 # spliced_intron 4721064-4721689 (orient:-) max_ev_support = 1 scaffold_12 - intron 4721064-4721689 asmbl_7569 scaffold_12 - retained_intron 4721064-4721689 asmbl_7566,asmbl_7567,asmbl_7568 // Retained and Spliced Intron # retained_intron 4721793-4722413 (orient:-) max_ev_support = 1 # spliced_intron 4721793-4722413 (orient:-) max_ev_support = 1 scaffold_12 - intron 4721793-4722413 asmbl_7568,asmbl_7569 scaffold_12 - retained_intron 4721793-4722413 asmbl_7566,asmbl_7567 // Retained and Spliced Intron # retained_intron 4722673-4722768 (orient:-) max_ev_support = 1 # spliced_intron 4722673-4722768 (orient:-) max_ev_support = 1 scaffold_12 - intron 4722673-4722768 asmbl_7566 scaffold_12 - retained_intron 4722673-4722768 asmbl_7567,asmbl_7568 // Retained and Spliced Intron # retained_intron 4783952-4784097 (orient:-) max_ev_support = 3 # spliced_intron 4783952-4784097 (orient:-) max_ev_support = 2 scaffold_12 - intron 4783952-4784097 asmbl_7581,asmbl_7582,asmbl_7583,asmbl_7586,asmbl_7587 scaffold_12 - retained_intron 4783952-4784097 asmbl_7579,asmbl_7585,asmbl_7588,asmbl_7589 // Retained and Spliced Intron # retained_intron 4784262-4784513 (orient:-) max_ev_support = 3 # spliced_intron 4784262-4784513 (orient:-) max_ev_support = 2 scaffold_12 - intron 4784262-4784513 asmbl_7581,asmbl_7582,asmbl_7583,asmbl_7585,asmbl_7586,asmbl_7587,asmbl_7588,asmbl_7589 scaffold_12 - retained_intron 4784262-4784513 asmbl_7579 // Retained and Spliced Intron # retained_intron 4788054-4789011 (orient:-) max_ev_support = 3 # spliced_intron 4788054-4789011 (orient:-) max_ev_support = 2 scaffold_12 - intron 4788054-4789011 asmbl_7582 scaffold_12 - retained_intron 4788054-4789011 asmbl_7579,asmbl_7580 // Retained and Spliced Intron # retained_intron 4787739-4787935 (orient:-) max_ev_support = 1 # spliced_intron 4787739-4787935 (orient:-) max_ev_support = 2 scaffold_12 - intron 4787739-4787935 asmbl_7579,asmbl_7582,asmbl_7584 scaffold_12 - retained_intron 4787739-4787935 asmbl_7580,asmbl_7586 // Retained and Spliced Intron # retained_intron 4784663-4785218 (orient:-) max_ev_support = 1 # spliced_intron 4784663-4785218 (orient:-) max_ev_support = 2 scaffold_12 - intron 4784663-4785218 asmbl_7581,asmbl_7589 scaffold_12 - retained_intron 4784663-4785218 asmbl_7585,asmbl_7587 // Exon Skipping and Retention # skipped_exon 4952039-4953568 (orient:-) max_ev_support = 1 # retained_exon 4952498-4952570 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 4952498-4952570 asmbl_7598 scaffold_12 - intron_skips_exon 4952039-4953568 asmbl_7599,asmbl_7600 // Retained and Spliced Intron # retained_intron 5039289-5039416 (orient:-) max_ev_support = 1 # spliced_intron 5039289-5039416 (orient:-) max_ev_support = 2 scaffold_12 - intron 5039289-5039416 asmbl_7604,asmbl_7605 scaffold_12 - retained_intron 5039289-5039416 asmbl_7607 // Retained and Spliced Intron # retained_intron 5140448-5141695 (orient:-) max_ev_support = 4 # spliced_intron 5140448-5141695 (orient:-) max_ev_support = 1 scaffold_12 - intron 5140448-5141695 asmbl_7618 scaffold_12 - retained_intron 5140448-5141695 asmbl_7617 // Retained and Spliced Intron # retained_intron 5452318-5452775 (orient:-) max_ev_support = 1 # spliced_intron 5452318-5452775 (orient:-) max_ev_support = 1 scaffold_12 - intron 5452318-5452775 asmbl_7625 scaffold_12 - retained_intron 5452318-5452775 asmbl_7626 // Retained and Spliced Intron # retained_intron 5635890-5636032 (orient:-) max_ev_support = 1 # spliced_intron 5635890-5636032 (orient:-) max_ev_support = 2 scaffold_12 - intron 5635890-5636032 asmbl_7645,asmbl_7647,asmbl_7648 scaffold_12 - retained_intron 5635890-5636032 asmbl_7646 // Retained and Spliced Intron # retained_intron 5636130-5636448 (orient:-) max_ev_support = 1 # spliced_intron 5636130-5636448 (orient:-) max_ev_support = 1 scaffold_12 - intron 5636130-5636448 asmbl_7646,asmbl_7647 scaffold_12 - retained_intron 5636130-5636448 asmbl_7648 // Retained and Spliced Intron # retained_intron 5636130-5637493 (orient:-) max_ev_support = 1 # spliced_intron 5636130-5637493 (orient:-) max_ev_support = 2 scaffold_12 - intron 5636130-5637493 asmbl_7645 scaffold_12 - retained_intron 5636130-5637493 asmbl_7648 // Retained and Spliced Intron # retained_intron 6396998-6397091 (orient:-) max_ev_support = 1 # spliced_intron 6396998-6397091 (orient:-) max_ev_support = 2 scaffold_12 - intron 6396998-6397091 asmbl_7660 scaffold_12 - retained_intron 6396998-6397091 asmbl_7662 // Retained and Spliced Intron # retained_intron 6426744-6427106 (orient:-) max_ev_support = 3 # spliced_intron 6426744-6427106 (orient:-) max_ev_support = 1 scaffold_12 - intron 6426744-6427106 asmbl_7669 scaffold_12 - retained_intron 6426744-6427106 asmbl_7664 // Retained and Spliced Intron # retained_intron 6424684-6424834 (orient:-) max_ev_support = 2 # spliced_intron 6424684-6424834 (orient:-) max_ev_support = 2 scaffold_12 - intron 6424684-6424834 asmbl_7665 scaffold_12 - retained_intron 6424684-6424834 asmbl_7666,asmbl_7667,asmbl_7668,asmbl_7669 // Retained and Spliced Intron # retained_intron 6421547-6421719 (orient:-) max_ev_support = 1 # spliced_intron 6421547-6421719 (orient:-) max_ev_support = 2 scaffold_12 - intron 6421547-6421719 asmbl_7665,asmbl_7666,asmbl_7668,asmbl_7669 scaffold_12 - retained_intron 6421547-6421719 asmbl_7667 // Exon Skipping and Retention # skipped_exon 6426744-6429219 (orient:-) max_ev_support = 2 # retained_exon 6427107-6428070 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 6427107-6428070 asmbl_7669 scaffold_12 - intron_skips_exon 6426744-6429219 asmbl_7665,asmbl_7666,asmbl_7667,asmbl_7668 // Retained and Spliced Intron # retained_intron 6526646-6526749 (orient:-) max_ev_support = 1 # spliced_intron 6526646-6526749 (orient:-) max_ev_support = 2 scaffold_12 - intron 6526646-6526749 asmbl_7673,asmbl_7675 scaffold_12 - retained_intron 6526646-6526749 asmbl_7674 // Retained and Spliced Intron # retained_intron 6943372-6943864 (orient:-) max_ev_support = 4 # spliced_intron 6943372-6943864 (orient:-) max_ev_support = 1 scaffold_12 - intron 6943372-6943864 asmbl_7681 scaffold_12 - retained_intron 6943372-6943864 asmbl_7679,asmbl_7680 // Retained and Spliced Intron # retained_intron 6943917-6944472 (orient:-) max_ev_support = 4 # spliced_intron 6943917-6944472 (orient:-) max_ev_support = 2 scaffold_12 - intron 6943917-6944472 asmbl_7680,asmbl_7681 scaffold_12 - retained_intron 6943917-6944472 asmbl_7679 // Retained and Spliced Intron # retained_intron 7275468-7275640 (orient:-) max_ev_support = 2 # spliced_intron 7275468-7275640 (orient:-) max_ev_support = 3 scaffold_12 - intron 7275468-7275640 asmbl_7692,asmbl_7693,asmbl_7697 scaffold_12 - retained_intron 7275468-7275640 asmbl_7694 // Retained and Spliced Intron # retained_intron 7275750-7275862 (orient:-) max_ev_support = 2 # spliced_intron 7275750-7275862 (orient:-) max_ev_support = 3 scaffold_12 - intron 7275750-7275862 asmbl_7692,asmbl_7693,asmbl_7695,asmbl_7697 scaffold_12 - retained_intron 7275750-7275862 asmbl_7694 // Retained and Spliced Intron # retained_intron 7392698-7392862 (orient:-) max_ev_support = 1 # spliced_intron 7392698-7392862 (orient:-) max_ev_support = 2 scaffold_12 - intron 7392698-7392862 asmbl_7705 scaffold_12 - retained_intron 7392698-7392862 asmbl_7706 // Exon Skipping and Retention # skipped_exon 7422321-7422854 (orient:-) max_ev_support = 2 # retained_exon 7422560-7422595 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7422560-7422595 asmbl_7712 scaffold_12 - intron_skips_exon 7422321-7422854 asmbl_7713 // Retained and Spliced Intron # retained_intron 7422596-7422854 (orient:-) max_ev_support = 1 # spliced_intron 7422596-7422854 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422596-7422854 asmbl_7712 scaffold_12 - retained_intron 7422596-7422854 asmbl_7715,asmbl_7716 // Retained and Spliced Intron # retained_intron 7422321-7422559 (orient:-) max_ev_support = 1 # spliced_intron 7422321-7422559 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422321-7422559 asmbl_7712,asmbl_7715 scaffold_12 - retained_intron 7422321-7422559 asmbl_7716 // Retained and Spliced Intron # retained_intron 7422321-7422854 (orient:-) max_ev_support = 1 # spliced_intron 7422321-7422854 (orient:-) max_ev_support = 2 scaffold_12 - intron 7422321-7422854 asmbl_7713 scaffold_12 - retained_intron 7422321-7422854 asmbl_7716 // Retained and Spliced Intron # retained_intron 7499766-7499934 (orient:-) max_ev_support = 2 # spliced_intron 7499766-7499934 (orient:-) max_ev_support = 2 scaffold_12 - intron 7499766-7499934 asmbl_7718 scaffold_12 - retained_intron 7499766-7499934 asmbl_7717 // Exon Skipping and Retention # skipped_exon 7540862-7541225 (orient:-) max_ev_support = 2 # retained_exon 7541007-7541102 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7541007-7541102 asmbl_7723 scaffold_12 - intron_skips_exon 7540862-7541225 asmbl_7724 // Exon Skipping and Retention # skipped_exon 7591172-7592710 (orient:-) max_ev_support = 2 # retained_exon 7591312-7591701 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7591312-7591701 asmbl_7726 scaffold_12 - intron_skips_exon 7591172-7592710 asmbl_7727 // Exon Skipping and Retention # skipped_exon 7617691-7618187 (orient:-) max_ev_support = 1 # retained_exon 7617818-7617898 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 7617818-7617898 asmbl_7730,asmbl_7731,asmbl_7733,asmbl_7736 scaffold_12 - intron_skips_exon 7617691-7618187 asmbl_7732,asmbl_7734,asmbl_7735 // Exon Skipping and Retention # skipped_exon 7617899-7618496 (orient:-) max_ev_support = 2 # retained_exon 7618188-7618268 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 7618188-7618268 asmbl_7732,asmbl_7734,asmbl_7735 scaffold_12 - intron_skips_exon 7617899-7618496 asmbl_7730,asmbl_7731,asmbl_7733,asmbl_7736 // Retained and Spliced Intron # retained_intron 9002159-9002285 (orient:-) max_ev_support = 1 # spliced_intron 9002159-9002285 (orient:-) max_ev_support = 1 scaffold_12 - intron 9002159-9002285 asmbl_7764 scaffold_12 - retained_intron 9002159-9002285 asmbl_7763 // Retained and Spliced Intron # retained_intron 9236297-9236367 (orient:-) max_ev_support = 2 # spliced_intron 9236297-9236367 (orient:-) max_ev_support = 1 scaffold_12 - intron 9236297-9236367 asmbl_7792,asmbl_7795,asmbl_7796,asmbl_7797 scaffold_12 - retained_intron 9236297-9236367 asmbl_7787,asmbl_7789,asmbl_7793,asmbl_7798 // Exon Skipping and Retention # skipped_exon 9235345-9236367 (orient:-) max_ev_support = 1 # retained_exon 9236184-9236296 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 9236184-9236296 asmbl_7792,asmbl_7795,asmbl_7796,asmbl_7797 scaffold_12 - intron_skips_exon 9235345-9236367 asmbl_7788,asmbl_7791,asmbl_7794,asmbl_7799 // Retained and Spliced Intron # retained_intron 9687346-9687437 (orient:-) max_ev_support = 2 # spliced_intron 9687346-9687437 (orient:-) max_ev_support = 2 scaffold_12 - intron 9687346-9687437 asmbl_7820,asmbl_7822,asmbl_7823 scaffold_12 - retained_intron 9687346-9687437 asmbl_7819 // Exon Skipping and Retention # skipped_exon 9687346-9690020 (orient:-) max_ev_support = 3 # retained_exon 9687438-9687595 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 9687438-9687595 asmbl_7820,asmbl_7822 scaffold_12 - intron_skips_exon 9687346-9690020 asmbl_7817,asmbl_7818 // Retained and Spliced Intron # retained_intron 9855571-9855735 (orient:-) max_ev_support = 2 # spliced_intron 9855571-9855735 (orient:-) max_ev_support = 1 scaffold_12 - intron 9855571-9855735 asmbl_7827 scaffold_12 - retained_intron 9855571-9855735 asmbl_7826 // Retained and Spliced Intron # retained_intron 9972719-9972921 (orient:-) max_ev_support = 2 # spliced_intron 9972719-9972921 (orient:-) max_ev_support = 3 scaffold_12 - intron 9972719-9972921 asmbl_7832 scaffold_12 - retained_intron 9972719-9972921 asmbl_7834 // Retained and Spliced Intron # retained_intron 9972719-9972986 (orient:-) max_ev_support = 2 # spliced_intron 9972719-9972986 (orient:-) max_ev_support = 3 scaffold_12 - intron 9972719-9972986 asmbl_7833 scaffold_12 - retained_intron 9972719-9972986 asmbl_7834 // Retained and Spliced Intron # retained_intron 9987993-9988214 (orient:-) max_ev_support = 1 # spliced_intron 9987993-9988214 (orient:-) max_ev_support = 2 scaffold_12 - intron 9987993-9988214 asmbl_7838,asmbl_7840 scaffold_12 - retained_intron 9987993-9988214 asmbl_7839 // Exon Skipping and Retention # skipped_exon 10003814-10004420 (orient:-) max_ev_support = 1 # retained_exon 10003911-10004093 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10003911-10004093 asmbl_7841,asmbl_7842 scaffold_12 - intron_skips_exon 10003814-10004420 asmbl_7843 // Exon Skipping and Retention # skipped_exon 10004094-10004735 (orient:-) max_ev_support = 2 # retained_exon 10004225-10004603 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 10004225-10004603 asmbl_7842 scaffold_12 - intron_skips_exon 10004094-10004735 asmbl_7841 // Exon Skipping and Retention # skipped_exon 10187619-10188527 (orient:-) max_ev_support = 2 # retained_exon 10187771-10187904 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10187771-10187904 asmbl_7858,asmbl_7861 scaffold_12 - intron_skips_exon 10187619-10188527 asmbl_7859,asmbl_7865 // Exon Skipping and Retention # skipped_exon 10187619-10188436 (orient:-) max_ev_support = 2 # retained_exon 10187771-10187904 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 10187771-10187904 asmbl_7858,asmbl_7861 scaffold_12 - intron_skips_exon 10187619-10188436 asmbl_7860 // Retained and Spliced Intron # retained_intron 10187619-10187770 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10187770 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10187770 asmbl_7858 scaffold_12 - retained_intron 10187619-10187770 asmbl_7862,asmbl_7863,asmbl_7864 // Retained and Spliced Intron # retained_intron 10187622-10187770 (orient:-) max_ev_support = 1 # spliced_intron 10187622-10187770 (orient:-) max_ev_support = 1 scaffold_12 - intron 10187622-10187770 asmbl_7861 scaffold_12 - retained_intron 10187622-10187770 asmbl_7862,asmbl_7863,asmbl_7864 // Retained and Spliced Intron # retained_intron 10186262-10186424 (orient:-) max_ev_support = 1 # spliced_intron 10186262-10186424 (orient:-) max_ev_support = 2 scaffold_12 - intron 10186262-10186424 asmbl_7858,asmbl_7859,asmbl_7860,asmbl_7861,asmbl_7862,asmbl_7864,asmbl_7866 scaffold_12 - retained_intron 10186262-10186424 asmbl_7863,asmbl_7865 // Retained and Spliced Intron # retained_intron 10187619-10188436 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10188436 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10188436 asmbl_7860 scaffold_12 - retained_intron 10187619-10188436 asmbl_7863,asmbl_7864 // Retained and Spliced Intron # retained_intron 10187619-10188527 (orient:-) max_ev_support = 1 # spliced_intron 10187619-10188527 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187619-10188527 asmbl_7859,asmbl_7865 scaffold_12 - retained_intron 10187619-10188527 asmbl_7863,asmbl_7864 // Retained and Spliced Intron # retained_intron 10187905-10188527 (orient:-) max_ev_support = 1 # spliced_intron 10187905-10188527 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187905-10188527 asmbl_7858,asmbl_7861,asmbl_7862 scaffold_12 - retained_intron 10187905-10188527 asmbl_7863,asmbl_7864 // Retained and Spliced Intron # retained_intron 10187010-10187126 (orient:-) max_ev_support = 2 # spliced_intron 10187010-10187126 (orient:-) max_ev_support = 2 scaffold_12 - intron 10187010-10187126 asmbl_7858,asmbl_7859,asmbl_7860,asmbl_7861,asmbl_7862,asmbl_7863,asmbl_7864,asmbl_7865,asmbl_7866 scaffold_12 - retained_intron 10187010-10187126 asmbl_7867 // Retained and Spliced Intron # retained_intron 10341771-10341927 (orient:-) max_ev_support = 2 # spliced_intron 10341771-10341927 (orient:-) max_ev_support = 2 scaffold_12 - intron 10341771-10341927 asmbl_7874 scaffold_12 - retained_intron 10341771-10341927 asmbl_7873,asmbl_7875 // Retained and Spliced Intron # retained_intron 11315720-11315814 (orient:-) max_ev_support = 2 # spliced_intron 11315720-11315814 (orient:-) max_ev_support = 2 scaffold_12 - intron 11315720-11315814 asmbl_7925 scaffold_12 - retained_intron 11315720-11315814 asmbl_7926 // Retained and Spliced Intron # retained_intron 11690593-11690936 (orient:-) max_ev_support = 2 # spliced_intron 11690593-11690936 (orient:-) max_ev_support = 2 scaffold_12 - intron 11690593-11690936 asmbl_7955 scaffold_12 - retained_intron 11690593-11690936 asmbl_7954 // Exon Skipping and Retention # skipped_exon 11915465-11917767 (orient:-) max_ev_support = 3 # retained_exon 11915921-11916018 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 11915921-11916018 asmbl_7967 scaffold_12 - intron_skips_exon 11915465-11917767 asmbl_7966 // Retained and Spliced Intron # retained_intron 12003833-12004558 (orient:-) max_ev_support = 2 # spliced_intron 12003833-12004558 (orient:-) max_ev_support = 3 scaffold_12 - intron 12003833-12004558 asmbl_7976 scaffold_12 - retained_intron 12003833-12004558 asmbl_7977,asmbl_7978 // Retained and Spliced Intron # retained_intron 12005072-12005349 (orient:-) max_ev_support = 2 # spliced_intron 12005072-12005349 (orient:-) max_ev_support = 3 scaffold_12 - intron 12005072-12005349 asmbl_7976,asmbl_7978 scaffold_12 - retained_intron 12005072-12005349 asmbl_7977 // Retained and Spliced Intron # retained_intron 12285468-12285562 (orient:-) max_ev_support = 1 # spliced_intron 12285468-12285562 (orient:-) max_ev_support = 1 scaffold_12 - intron 12285468-12285562 asmbl_7983 scaffold_12 - retained_intron 12285468-12285562 asmbl_7984 // Retained and Spliced Intron # retained_intron 12285468-12285624 (orient:-) max_ev_support = 1 # spliced_intron 12285468-12285624 (orient:-) max_ev_support = 3 scaffold_12 - intron 12285468-12285624 asmbl_7982 scaffold_12 - retained_intron 12285468-12285624 asmbl_7984 // Retained and Spliced Intron # retained_intron 12287220-12287724 (orient:-) max_ev_support = 2 # spliced_intron 12287220-12287724 (orient:-) max_ev_support = 1 scaffold_12 - intron 12287220-12287724 asmbl_7986,asmbl_7988 scaffold_12 - retained_intron 12287220-12287724 asmbl_7985,asmbl_7987,asmbl_7989,asmbl_7990,asmbl_7991 // Exon Skipping and Retention # skipped_exon 12288119-12290941 (orient:-) max_ev_support = 1 # retained_exon 12288533-12288574 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 12288533-12288574 asmbl_7985,asmbl_7989 scaffold_12 - intron_skips_exon 12288119-12290941 asmbl_7990 // Retained and Spliced Intron # retained_intron 12291136-12292234 (orient:-) max_ev_support = 5 # spliced_intron 12291136-12292234 (orient:-) max_ev_support = 1 scaffold_12 - intron 12291136-12292234 asmbl_7988 scaffold_12 - retained_intron 12291136-12292234 asmbl_7985,asmbl_7986 // Retained and Spliced Intron # retained_intron 12291139-12292234 (orient:-) max_ev_support = 5 # spliced_intron 12291139-12292234 (orient:-) max_ev_support = 1 scaffold_12 - intron 12291139-12292234 asmbl_7989,asmbl_7990,asmbl_7991 scaffold_12 - retained_intron 12291139-12292234 asmbl_7985,asmbl_7986 // Retained and Spliced Intron # retained_intron 12288119-12288532 (orient:-) max_ev_support = 1 # spliced_intron 12288119-12288532 (orient:-) max_ev_support = 1 scaffold_12 - intron 12288119-12288532 asmbl_7985,asmbl_7988,asmbl_7989,asmbl_7991 scaffold_12 - retained_intron 12288119-12288532 asmbl_7986 // Retained and Spliced Intron # retained_intron 12288119-12290941 (orient:-) max_ev_support = 3 # spliced_intron 12288119-12290941 (orient:-) max_ev_support = 1 scaffold_12 - intron 12288119-12290941 asmbl_7990 scaffold_12 - retained_intron 12288119-12290941 asmbl_7986 // Retained and Spliced Intron # retained_intron 12288575-12288996 (orient:-) max_ev_support = 1 # spliced_intron 12288575-12288996 (orient:-) max_ev_support = 1 scaffold_12 - intron 12288575-12288996 asmbl_7985,asmbl_7989 scaffold_12 - retained_intron 12288575-12288996 asmbl_7986,asmbl_7988,asmbl_7991 // Retained and Spliced Intron # retained_intron 12287762-12287963 (orient:-) max_ev_support = 2 # spliced_intron 12287762-12287963 (orient:-) max_ev_support = 1 scaffold_12 - intron 12287762-12287963 asmbl_7985,asmbl_7986,asmbl_7988,asmbl_7991 scaffold_12 - retained_intron 12287762-12287963 asmbl_7987,asmbl_7989,asmbl_7990 // Retained and Spliced Intron # retained_intron 12341400-12341510 (orient:-) max_ev_support = 2 # spliced_intron 12341400-12341510 (orient:-) max_ev_support = 2 scaffold_12 - intron 12341400-12341510 asmbl_8006,asmbl_8008 scaffold_12 - retained_intron 12341400-12341510 asmbl_8007 // Retained and Spliced Intron # retained_intron 12836971-12837042 (orient:-) max_ev_support = 1 # spliced_intron 12836971-12837042 (orient:-) max_ev_support = 1 scaffold_12 - intron 12836971-12837042 asmbl_8025 scaffold_12 - retained_intron 12836971-12837042 asmbl_8024 // Exon Skipping and Retention # skipped_exon 13030042-13031704 (orient:-) max_ev_support = 2 # retained_exon 13031511-13031581 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13031511-13031581 asmbl_8034 scaffold_12 - intron_skips_exon 13030042-13031704 asmbl_8033 // Exon Skipping and Retention # skipped_exon 13030949-13031704 (orient:-) max_ev_support = 1 # retained_exon 13031511-13031581 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13031511-13031581 asmbl_8034 scaffold_12 - intron_skips_exon 13030949-13031704 asmbl_8035,asmbl_8036 // Exon Skipping and Retention # skipped_exon 13030042-13031510 (orient:-) max_ev_support = 1 # retained_exon 13030878-13030948 (orient:-) max_ev_support = 1 scaffold_12 - retained_exons 13030878-13030948 asmbl_8035,asmbl_8036 scaffold_12 - intron_skips_exon 13030042-13031510 asmbl_8034 // Retained and Spliced Intron # retained_intron 14045126-14045217 (orient:-) max_ev_support = 2 # spliced_intron 14045126-14045217 (orient:-) max_ev_support = 2 scaffold_12 - intron 14045126-14045217 asmbl_8092,asmbl_8095 scaffold_12 - retained_intron 14045126-14045217 asmbl_8091,asmbl_8093 // Retained and Spliced Intron # retained_intron 14045126-14045229 (orient:-) max_ev_support = 2 # spliced_intron 14045126-14045229 (orient:-) max_ev_support = 1 scaffold_12 - intron 14045126-14045229 asmbl_8094,asmbl_8096 scaffold_12 - retained_intron 14045126-14045229 asmbl_8091,asmbl_8093 // Retained and Spliced Intron # retained_intron 14100589-14100679 (orient:-) max_ev_support = 2 # spliced_intron 14100589-14100679 (orient:-) max_ev_support = 1 scaffold_12 - intron 14100589-14100679 asmbl_8106 scaffold_12 - retained_intron 14100589-14100679 asmbl_8104 // Retained and Spliced Intron # retained_intron 14100592-14100679 (orient:-) max_ev_support = 2 # spliced_intron 14100592-14100679 (orient:-) max_ev_support = 2 scaffold_12 - intron 14100592-14100679 asmbl_8105 scaffold_12 - retained_intron 14100592-14100679 asmbl_8104 // Exon Skipping and Retention # skipped_exon 14107246-14107823 (orient:-) max_ev_support = 2 # retained_exon 14107535-14107552 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14107535-14107552 asmbl_8107,asmbl_8113,asmbl_8114 scaffold_12 - intron_skips_exon 14107246-14107823 asmbl_8108,asmbl_8111,asmbl_8112 // Retained and Spliced Intron # retained_intron 14104565-14104838 (orient:-) max_ev_support = 2 # spliced_intron 14104565-14104838 (orient:-) max_ev_support = 2 scaffold_12 - intron 14104565-14104838 asmbl_8111,asmbl_8112,asmbl_8113,asmbl_8114 scaffold_12 - retained_intron 14104565-14104838 asmbl_8109 // Exon Skipping and Retention # skipped_exon 14104032-14104838 (orient:-) max_ev_support = 4 # retained_exon 14104459-14104564 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14104459-14104564 asmbl_8111,asmbl_8114 scaffold_12 - intron_skips_exon 14104032-14104838 asmbl_8107,asmbl_8108 // Exon Skipping and Retention # skipped_exon 14104032-14104838 (orient:-) max_ev_support = 4 # retained_exon 14104510-14104564 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 14104510-14104564 asmbl_8112,asmbl_8113 scaffold_12 - intron_skips_exon 14104032-14104838 asmbl_8107,asmbl_8108 // Retained and Spliced Intron # retained_intron 14123203-14123414 (orient:-) max_ev_support = 3 # spliced_intron 14123203-14123414 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123203-14123414 asmbl_8120,asmbl_8122 scaffold_12 - retained_intron 14123203-14123414 asmbl_8117,asmbl_8118,asmbl_8119,asmbl_8121 // Retained and Spliced Intron # retained_intron 14123567-14123697 (orient:-) max_ev_support = 3 # spliced_intron 14123567-14123697 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123567-14123697 asmbl_8119,asmbl_8120,asmbl_8122 scaffold_12 - retained_intron 14123567-14123697 asmbl_8117,asmbl_8118,asmbl_8121 // Retained and Spliced Intron # retained_intron 14123813-14123946 (orient:-) max_ev_support = 3 # spliced_intron 14123813-14123946 (orient:-) max_ev_support = 2 scaffold_12 - intron 14123813-14123946 asmbl_8119,asmbl_8120,asmbl_8122 scaffold_12 - retained_intron 14123813-14123946 asmbl_8117,asmbl_8118,asmbl_8121 // Retained and Spliced Intron # retained_intron 14124654-14124874 (orient:-) max_ev_support = 2 # spliced_intron 14124654-14124874 (orient:-) max_ev_support = 1 scaffold_12 - intron 14124654-14124874 asmbl_8117 scaffold_12 - retained_intron 14124654-14124874 asmbl_8121 // Retained and Spliced Intron # retained_intron 14124654-14125258 (orient:-) max_ev_support = 2 # spliced_intron 14124654-14125258 (orient:-) max_ev_support = 2 scaffold_12 - intron 14124654-14125258 asmbl_8118,asmbl_8119,asmbl_8120,asmbl_8122 scaffold_12 - retained_intron 14124654-14125258 asmbl_8121 // Retained and Spliced Intron # retained_intron 14184773-14185070 (orient:-) max_ev_support = 1 # spliced_intron 14184773-14185070 (orient:-) max_ev_support = 2 scaffold_12 - intron 14184773-14185070 asmbl_8123,asmbl_8124 scaffold_12 - retained_intron 14184773-14185070 asmbl_8127 // Retained and Spliced Intron # retained_intron 14289988-14290450 (orient:-) max_ev_support = 2 # spliced_intron 14289988-14290450 (orient:-) max_ev_support = 2 scaffold_12 - intron 14289988-14290450 asmbl_8133 scaffold_12 - retained_intron 14289988-14290450 asmbl_8132,asmbl_8134 // Retained and Spliced Intron # retained_intron 14289469-14289681 (orient:-) max_ev_support = 2 # spliced_intron 14289469-14289681 (orient:-) max_ev_support = 2 scaffold_12 - intron 14289469-14289681 asmbl_8132,asmbl_8133,asmbl_8136 scaffold_12 - retained_intron 14289469-14289681 asmbl_8134 // Retained and Spliced Intron # retained_intron 14944862-14945190 (orient:-) max_ev_support = 2 # spliced_intron 14944862-14945190 (orient:-) max_ev_support = 3 scaffold_12 - intron 14944862-14945190 asmbl_8146,asmbl_8147 scaffold_12 - retained_intron 14944862-14945190 asmbl_8148 // Retained and Spliced Intron # retained_intron 14962338-14962439 (orient:-) max_ev_support = 2 # spliced_intron 14962338-14962439 (orient:-) max_ev_support = 2 scaffold_12 - intron 14962338-14962439 asmbl_8149 scaffold_12 - retained_intron 14962338-14962439 asmbl_8150,asmbl_8151 // Retained and Spliced Intron # retained_intron 14990698-14991070 (orient:-) max_ev_support = 3 # spliced_intron 14990698-14991070 (orient:-) max_ev_support = 3 scaffold_12 - intron 14990698-14991070 asmbl_8158 scaffold_12 - retained_intron 14990698-14991070 asmbl_8155,asmbl_8156 // Exon Skipping and Retention # skipped_exon 14989527-14991070 (orient:-) max_ev_support = 3 # retained_exon 14990638-14990697 (orient:-) max_ev_support = 3 scaffold_12 - retained_exons 14990638-14990697 asmbl_8158 scaffold_12 - intron_skips_exon 14989527-14991070 asmbl_8157 // Retained and Spliced Intron # retained_intron 14989527-14989630 (orient:-) max_ev_support = 2 # spliced_intron 14989527-14989630 (orient:-) max_ev_support = 1 scaffold_12 - intron 14989527-14989630 asmbl_8156 scaffold_12 - retained_intron 14989527-14989630 asmbl_8159 // Retained and Spliced Intron # retained_intron 14989527-14989688 (orient:-) max_ev_support = 2 # spliced_intron 14989527-14989688 (orient:-) max_ev_support = 3 scaffold_12 - intron 14989527-14989688 asmbl_8155 scaffold_12 - retained_intron 14989527-14989688 asmbl_8159 // Retained and Spliced Intron # retained_intron 14988995-14989423 (orient:-) max_ev_support = 2 # spliced_intron 14988995-14989423 (orient:-) max_ev_support = 3 scaffold_12 - intron 14988995-14989423 asmbl_8155,asmbl_8156,asmbl_8157,asmbl_8158,asmbl_8159 scaffold_12 - retained_intron 14988995-14989423 asmbl_8160 // Retained and Spliced Intron # retained_intron 15014286-15014615 (orient:-) max_ev_support = 2 # spliced_intron 15014286-15014615 (orient:-) max_ev_support = 2 scaffold_12 - intron 15014286-15014615 asmbl_8166,asmbl_8167 scaffold_12 - retained_intron 15014286-15014615 asmbl_8165,asmbl_8168 // Retained and Spliced Intron # retained_intron 15012722-15012846 (orient:-) max_ev_support = 2 # spliced_intron 15012722-15012846 (orient:-) max_ev_support = 2 scaffold_12 - intron 15012722-15012846 asmbl_8165,asmbl_8167 scaffold_12 - retained_intron 15012722-15012846 asmbl_8166,asmbl_8168,asmbl_8169 // Retained and Spliced Intron # retained_intron 15013574-15013828 (orient:-) max_ev_support = 1 # spliced_intron 15013574-15013828 (orient:-) max_ev_support = 2 scaffold_12 - intron 15013574-15013828 asmbl_8165,asmbl_8166,asmbl_8167,asmbl_8168 scaffold_12 - retained_intron 15013574-15013828 asmbl_8169 // Retained and Spliced Intron # retained_intron 15094938-15096253 (orient:-) max_ev_support = 3 # spliced_intron 15094938-15096253 (orient:-) max_ev_support = 2 scaffold_12 - intron 15094938-15096253 asmbl_8182 scaffold_12 - retained_intron 15094938-15096253 asmbl_8179 // Exon Skipping and Retention # skipped_exon 15094938-15097184 (orient:-) max_ev_support = 1 # retained_exon 15096254-15096945 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 15096254-15096310,15096865-15096945 asmbl_8182 scaffold_12 - intron_skips_exon 15094938-15097184 asmbl_8178 // Retained and Spliced Intron # retained_intron 15425104-15425462 (orient:-) max_ev_support = 1 # spliced_intron 15425104-15425462 (orient:-) max_ev_support = 2 scaffold_12 - intron 15425104-15425462 asmbl_8217,asmbl_8219,asmbl_8220 scaffold_12 - retained_intron 15425104-15425462 asmbl_8218 // Retained and Spliced Intron # retained_intron 15425487-15425594 (orient:-) max_ev_support = 1 # spliced_intron 15425487-15425594 (orient:-) max_ev_support = 2 scaffold_12 - intron 15425487-15425594 asmbl_8217,asmbl_8220 scaffold_12 - retained_intron 15425487-15425594 asmbl_8219 // Exon Skipping and Retention # skipped_exon 15678646-15679640 (orient:-) max_ev_support = 1 # retained_exon 15678771-15678890 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 15678771-15678890 asmbl_8231,asmbl_8236 scaffold_12 - intron_skips_exon 15678646-15679640 asmbl_8234,asmbl_8235 // Exon Skipping and Retention # skipped_exon 15678894-15680570 (orient:-) max_ev_support = 2 # retained_exon 15679641-15679763 (orient:-) max_ev_support = 2 scaffold_12 - retained_exons 15679641-15679763 asmbl_8231,asmbl_8232,asmbl_8234,asmbl_8235,asmbl_8236 scaffold_12 - intron_skips_exon 15678894-15680570 asmbl_8233 // Retained and Spliced Intron # retained_intron 15773119-15773403 (orient:-) max_ev_support = 2 # spliced_intron 15773119-15773403 (orient:-) max_ev_support = 2 scaffold_12 - intron 15773119-15773403 asmbl_8241 scaffold_12 - retained_intron 15773119-15773403 asmbl_8242 // Retained and Spliced Intron # retained_intron 16182802-16183019 (orient:-) max_ev_support = 1 # spliced_intron 16182802-16183019 (orient:-) max_ev_support = 3 scaffold_12 - intron 16182802-16183019 asmbl_8244,asmbl_8245 scaffold_12 - retained_intron 16182802-16183019 asmbl_8246 // Retained and Spliced Intron # retained_intron 16721517-16721700 (orient:-) max_ev_support = 2 # spliced_intron 16721517-16721700 (orient:-) max_ev_support = 2 scaffold_12 - intron 16721517-16721700 asmbl_8277 scaffold_12 - retained_intron 16721517-16721700 asmbl_8276 // Exon Skipping and Retention # skipped_exon 1056128-1056993 (orient:+) max_ev_support = 1 # retained_exon 1056754-1056810 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 1056754-1056810 asmbl_8418,asmbl_8421 scaffold_12 + intron_skips_exon 1056128-1056993 asmbl_8419 // Exon Skipping and Retention # skipped_exon 1056407-1057445 (orient:+) max_ev_support = 1 # retained_exon 1056754-1057091 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 1056754-1056810,1056994-1057091 asmbl_8418,asmbl_8421 scaffold_12 + intron_skips_exon 1056407-1057445 asmbl_8420 // Retained and Spliced Intron # retained_intron 1059560-1059598 (orient:+) max_ev_support = 2 # spliced_intron 1059560-1059598 (orient:+) max_ev_support = 1 scaffold_12 + intron 1059560-1059598 asmbl_8421 scaffold_12 + retained_intron 1059560-1059598 asmbl_8418,asmbl_8419,asmbl_8420 // Exon Skipping and Retention # skipped_exon 1055100-1056753 (orient:+) max_ev_support = 2 # retained_exon 1056071-1056127 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1056071-1056127 asmbl_8419 scaffold_12 + intron_skips_exon 1055100-1056753 asmbl_8418,asmbl_8421 // Exon Skipping and Retention # skipped_exon 1055100-1056753 (orient:+) max_ev_support = 2 # retained_exon 1056071-1056406 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1056071-1056127,1056309-1056406 asmbl_8420 scaffold_12 + intron_skips_exon 1055100-1056753 asmbl_8418,asmbl_8421 // Exon Skipping and Retention # skipped_exon 1339354-1341285 (orient:+) max_ev_support = 2 # retained_exon 1340044-1340157 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 1340044-1340157 asmbl_8433,asmbl_8434 scaffold_12 + intron_skips_exon 1339354-1341285 asmbl_8432 // Retained and Spliced Intron # retained_intron 1383649-1383801 (orient:+) max_ev_support = 1 # spliced_intron 1383649-1383801 (orient:+) max_ev_support = 2 scaffold_12 + intron 1383649-1383801 asmbl_8435 scaffold_12 + retained_intron 1383649-1383801 asmbl_8436 // Exon Skipping and Retention # skipped_exon 2576972-2578181 (orient:+) max_ev_support = 3 # retained_exon 2577724-2577884 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 2577724-2577884 asmbl_8462 scaffold_12 + intron_skips_exon 2576972-2578181 asmbl_8463 // Retained and Spliced Intron # retained_intron 2662471-2662567 (orient:+) max_ev_support = 2 # spliced_intron 2662471-2662567 (orient:+) max_ev_support = 2 scaffold_12 + intron 2662471-2662567 asmbl_8467 scaffold_12 + retained_intron 2662471-2662567 asmbl_8468 // Retained and Spliced Intron # retained_intron 2721443-2721926 (orient:+) max_ev_support = 2 # spliced_intron 2721443-2721926 (orient:+) max_ev_support = 1 scaffold_12 + intron 2721443-2721926 asmbl_8481 scaffold_12 + retained_intron 2721443-2721926 asmbl_8480 // Exon Skipping and Retention # skipped_exon 2721443-2722927 (orient:+) max_ev_support = 2 # retained_exon 2721927-2721995 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 2721927-2721995 asmbl_8481 scaffold_12 + intron_skips_exon 2721443-2722927 asmbl_8479 // Retained and Spliced Intron # retained_intron 3331444-3331469 (orient:+) max_ev_support = 2 # spliced_intron 3331444-3331469 (orient:+) max_ev_support = 1 scaffold_12 + intron 3331444-3331469 asmbl_8510 scaffold_12 + retained_intron 3331444-3331469 asmbl_8507,asmbl_8508 // Exon Skipping and Retention # skipped_exon 3330306-3331370 (orient:+) max_ev_support = 2 # retained_exon 3330692-3330742 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 3330692-3330742 asmbl_8508,asmbl_8510 scaffold_12 + intron_skips_exon 3330306-3331370 asmbl_8507 // Retained and Spliced Intron # retained_intron 3352547-3352645 (orient:+) max_ev_support = 1 # spliced_intron 3352547-3352645 (orient:+) max_ev_support = 1 scaffold_12 + intron 3352547-3352645 asmbl_8513 scaffold_12 + retained_intron 3352547-3352645 asmbl_8512 // Retained and Spliced Intron # retained_intron 3400110-3400288 (orient:+) max_ev_support = 1 # spliced_intron 3400110-3400288 (orient:+) max_ev_support = 1 scaffold_12 + intron 3400110-3400288 asmbl_8520 scaffold_12 + retained_intron 3400110-3400288 asmbl_8519 // Retained and Spliced Intron # retained_intron 4204687-4204911 (orient:+) max_ev_support = 3 # spliced_intron 4204687-4204911 (orient:+) max_ev_support = 3 scaffold_12 + intron 4204687-4204911 asmbl_8545 scaffold_12 + retained_intron 4204687-4204911 asmbl_8546 // Retained and Spliced Intron # retained_intron 4204687-4205332 (orient:+) max_ev_support = 3 # spliced_intron 4204687-4205332 (orient:+) max_ev_support = 1 scaffold_12 + intron 4204687-4205332 asmbl_8547 scaffold_12 + retained_intron 4204687-4205332 asmbl_8546 // Retained and Spliced Intron # retained_intron 4753264-4753369 (orient:+) max_ev_support = 2 # spliced_intron 4753264-4753369 (orient:+) max_ev_support = 1 scaffold_12 + intron 4753264-4753369 asmbl_8579 scaffold_12 + retained_intron 4753264-4753369 asmbl_8578 // Retained and Spliced Intron # retained_intron 4983043-4983368 (orient:+) max_ev_support = 4 # spliced_intron 4983043-4983368 (orient:+) max_ev_support = 1 scaffold_12 + intron 4983043-4983368 asmbl_8587 scaffold_12 + retained_intron 4983043-4983368 asmbl_8585 // Retained and Spliced Intron # retained_intron 4984361-4984577 (orient:+) max_ev_support = 1 # spliced_intron 4984361-4984577 (orient:+) max_ev_support = 2 scaffold_12 + intron 4984361-4984577 asmbl_8585,asmbl_8586,asmbl_8590,asmbl_8591 scaffold_12 + retained_intron 4984361-4984577 asmbl_8592 // Retained and Spliced Intron # retained_intron 4984474-4984577 (orient:+) max_ev_support = 1 # spliced_intron 4984474-4984577 (orient:+) max_ev_support = 1 scaffold_12 + intron 4984474-4984577 asmbl_8593 scaffold_12 + retained_intron 4984474-4984577 asmbl_8592 // Exon Skipping and Retention # skipped_exon 6417045-6417345 (orient:+) max_ev_support = 1 # retained_exon 6417131-6417247 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 6417131-6417247 asmbl_8639,asmbl_8640,asmbl_8642,asmbl_8644 scaffold_12 + intron_skips_exon 6417045-6417345 asmbl_8643,asmbl_8645 // Retained and Spliced Intron # retained_intron 6429911-6430170 (orient:+) max_ev_support = 1 # spliced_intron 6429911-6430170 (orient:+) max_ev_support = 2 scaffold_12 + intron 6429911-6430170 asmbl_8647 scaffold_12 + retained_intron 6429911-6430170 asmbl_8648 // Retained and Spliced Intron # retained_intron 6544970-6545003 (orient:+) max_ev_support = 3 # spliced_intron 6544970-6545003 (orient:+) max_ev_support = 1 scaffold_12 + intron 6544970-6545003 asmbl_8661 scaffold_12 + retained_intron 6544970-6545003 asmbl_8660,asmbl_8662 // Retained and Spliced Intron # retained_intron 6545038-6545105 (orient:+) max_ev_support = 1 # spliced_intron 6545038-6545105 (orient:+) max_ev_support = 2 scaffold_12 + intron 6545038-6545105 asmbl_8660 scaffold_12 + retained_intron 6545038-6545105 asmbl_8661 // Retained and Spliced Intron # retained_intron 6542586-6543063 (orient:+) max_ev_support = 2 # spliced_intron 6542586-6543063 (orient:+) max_ev_support = 3 scaffold_12 + intron 6542586-6543063 asmbl_8660,asmbl_8661 scaffold_12 + retained_intron 6542586-6543063 asmbl_8662 // Retained and Spliced Intron # retained_intron 7113789-7113837 (orient:+) max_ev_support = 2 # spliced_intron 7113789-7113837 (orient:+) max_ev_support = 1 scaffold_12 + intron 7113789-7113837 asmbl_8676 scaffold_12 + retained_intron 7113789-7113837 asmbl_8675,asmbl_8677 // Exon Skipping and Retention # skipped_exon 7172399-7173215 (orient:+) max_ev_support = 1 # retained_exon 7172721-7172892 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7172721-7172892 asmbl_8683,asmbl_8686 scaffold_12 + intron_skips_exon 7172399-7173215 asmbl_8684 // Retained and Spliced Intron # retained_intron 7172399-7172720 (orient:+) max_ev_support = 1 # spliced_intron 7172399-7172720 (orient:+) max_ev_support = 2 scaffold_12 + intron 7172399-7172720 asmbl_8683,asmbl_8686 scaffold_12 + retained_intron 7172399-7172720 asmbl_8685,asmbl_8687 // Retained and Spliced Intron # retained_intron 7172399-7173215 (orient:+) max_ev_support = 1 # spliced_intron 7172399-7173215 (orient:+) max_ev_support = 1 scaffold_12 + intron 7172399-7173215 asmbl_8684 scaffold_12 + retained_intron 7172399-7173215 asmbl_8687 // Retained and Spliced Intron # retained_intron 7172893-7173215 (orient:+) max_ev_support = 1 # spliced_intron 7172893-7173215 (orient:+) max_ev_support = 2 scaffold_12 + intron 7172893-7173215 asmbl_8683,asmbl_8685,asmbl_8686 scaffold_12 + retained_intron 7172893-7173215 asmbl_8687 // Retained and Spliced Intron # retained_intron 7534953-7535423 (orient:+) max_ev_support = 2 # spliced_intron 7534953-7535423 (orient:+) max_ev_support = 3 scaffold_12 + intron 7534953-7535423 asmbl_8728 scaffold_12 + retained_intron 7534953-7535423 asmbl_8729 // Retained and Spliced Intron # retained_intron 7643813-7644059 (orient:+) max_ev_support = 2 # spliced_intron 7643813-7644059 (orient:+) max_ev_support = 3 scaffold_12 + intron 7643813-7644059 asmbl_8737 scaffold_12 + retained_intron 7643813-7644059 asmbl_8738 // Exon Skipping and Retention # skipped_exon 7650035-7651198 (orient:+) max_ev_support = 3 # retained_exon 7650909-7650974 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 7650909-7650974 asmbl_8742 scaffold_12 + intron_skips_exon 7650035-7651198 asmbl_8739 // Retained and Spliced Intron # retained_intron 7670363-7670489 (orient:+) max_ev_support = 2 # spliced_intron 7670363-7670489 (orient:+) max_ev_support = 3 scaffold_12 + intron 7670363-7670489 asmbl_8749,asmbl_8751 scaffold_12 + retained_intron 7670363-7670489 asmbl_8750,asmbl_8752 // Retained and Spliced Intron # retained_intron 7669932-7670077 (orient:+) max_ev_support = 2 # spliced_intron 7669932-7670077 (orient:+) max_ev_support = 3 scaffold_12 + intron 7669932-7670077 asmbl_8749,asmbl_8750 scaffold_12 + retained_intron 7669932-7670077 asmbl_8751,asmbl_8752 // Retained and Spliced Intron # retained_intron 7773480-7773656 (orient:+) max_ev_support = 2 # spliced_intron 7773480-7773656 (orient:+) max_ev_support = 2 scaffold_12 + intron 7773480-7773656 asmbl_8759 scaffold_12 + retained_intron 7773480-7773656 asmbl_8760 // Exon Skipping and Retention # skipped_exon 7958547-7958938 (orient:+) max_ev_support = 2 # retained_exon 7958741-7958822 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7958741-7958822 asmbl_8762 scaffold_12 + intron_skips_exon 7958547-7958938 asmbl_8763,asmbl_8766 // Exon Skipping and Retention # skipped_exon 7962352-7963104 (orient:+) max_ev_support = 1 # retained_exon 7962714-7962843 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 7962714-7962843 asmbl_8762,asmbl_8763 scaffold_12 + intron_skips_exon 7962352-7963104 asmbl_8766 // Retained and Spliced Intron # retained_intron 7974105-7974222 (orient:+) max_ev_support = 1 # spliced_intron 7974105-7974222 (orient:+) max_ev_support = 3 scaffold_12 + intron 7974105-7974222 asmbl_8769,asmbl_8771 scaffold_12 + retained_intron 7974105-7974222 asmbl_8772 // Exon Skipping and Retention # skipped_exon 8824736-8825679 (orient:+) max_ev_support = 2 # retained_exon 8825193-8825578 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 8825193-8825295,8825454-8825578 asmbl_8792,asmbl_8795,asmbl_8796 scaffold_12 + intron_skips_exon 8824736-8825679 asmbl_8794 // Retained and Spliced Intron # retained_intron 8828274-8828345 (orient:+) max_ev_support = 1 # spliced_intron 8828274-8828345 (orient:+) max_ev_support = 2 scaffold_12 + intron 8828274-8828345 asmbl_8797 scaffold_12 + retained_intron 8828274-8828345 asmbl_8798 // Exon Skipping and Retention # skipped_exon 8915537-8916290 (orient:+) max_ev_support = 1 # retained_exon 8915968-8916065 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 8915968-8916065 asmbl_8804 scaffold_12 + intron_skips_exon 8915537-8916290 asmbl_8805 // Retained and Spliced Intron # retained_intron 9071332-9071490 (orient:+) max_ev_support = 2 # spliced_intron 9071332-9071490 (orient:+) max_ev_support = 3 scaffold_12 + intron 9071332-9071490 asmbl_8816 scaffold_12 + retained_intron 9071332-9071490 asmbl_8817 // Retained and Spliced Intron # retained_intron 9152051-9152228 (orient:+) max_ev_support = 1 # spliced_intron 9152051-9152228 (orient:+) max_ev_support = 3 scaffold_12 + intron 9152051-9152228 asmbl_8820,asmbl_8821 scaffold_12 + retained_intron 9152051-9152228 asmbl_8824 // Retained and Spliced Intron # retained_intron 9505734-9505871 (orient:+) max_ev_support = 3 # spliced_intron 9505734-9505871 (orient:+) max_ev_support = 3 scaffold_12 + intron 9505734-9505871 asmbl_8827 scaffold_12 + retained_intron 9505734-9505871 asmbl_8828,asmbl_8829 // Retained and Spliced Intron # retained_intron 9506497-9506614 (orient:+) max_ev_support = 1 # spliced_intron 9506497-9506614 (orient:+) max_ev_support = 2 scaffold_12 + intron 9506497-9506614 asmbl_8830 scaffold_12 + retained_intron 9506497-9506614 asmbl_8831 // Exon Skipping and Retention # skipped_exon 9667623-9668731 (orient:+) max_ev_support = 1 # retained_exon 9667999-9668104 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9667999-9668104 asmbl_8832,asmbl_8833 scaffold_12 + intron_skips_exon 9667623-9668731 asmbl_8836 // Exon Skipping and Retention # skipped_exon 9668105-9671050 (orient:+) max_ev_support = 2 # retained_exon 9669326-9669967 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9669326-9669437,9669874-9669967 asmbl_8832 scaffold_12 + intron_skips_exon 9668105-9671050 asmbl_8833 // Exon Skipping and Retention # skipped_exon 9668105-9669325 (orient:+) max_ev_support = 3 # retained_exon 9668732-9668837 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 9668732-9668837 asmbl_8836 scaffold_12 + intron_skips_exon 9668105-9669325 asmbl_8832 // Exon Skipping and Retention # skipped_exon 9797605-9799301 (orient:+) max_ev_support = 1 # retained_exon 9798633-9798739 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 9798633-9798739 asmbl_8843 scaffold_12 + intron_skips_exon 9797605-9799301 asmbl_8844 // Exon Skipping and Retention # skipped_exon 9827222-9828926 (orient:+) max_ev_support = 3 # retained_exon 9827830-9827884 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 9827830-9827884 asmbl_8847 scaffold_12 + intron_skips_exon 9827222-9828926 asmbl_8846 // Retained and Spliced Intron # retained_intron 9861352-9861459 (orient:+) max_ev_support = 1 # spliced_intron 9861352-9861459 (orient:+) max_ev_support = 2 scaffold_12 + intron 9861352-9861459 asmbl_8851 scaffold_12 + retained_intron 9861352-9861459 asmbl_8852 // Exon Skipping and Retention # skipped_exon 9889062-9890217 (orient:+) max_ev_support = 2 # retained_exon 9889568-9889672 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 9889568-9889672 asmbl_8856 scaffold_12 + intron_skips_exon 9889062-9890217 asmbl_8857 // Retained and Spliced Intron # retained_intron 10175034-10175126 (orient:+) max_ev_support = 3 # spliced_intron 10175034-10175126 (orient:+) max_ev_support = 1 scaffold_12 + intron 10175034-10175126 asmbl_8873 scaffold_12 + retained_intron 10175034-10175126 asmbl_8872 // Retained and Spliced Intron # retained_intron 10190123-10190194 (orient:+) max_ev_support = 1 # spliced_intron 10190123-10190194 (orient:+) max_ev_support = 1 scaffold_12 + intron 10190123-10190194 asmbl_8877 scaffold_12 + retained_intron 10190123-10190194 asmbl_8876 // Retained and Spliced Intron # retained_intron 10384453-10384526 (orient:+) max_ev_support = 1 # spliced_intron 10384453-10384526 (orient:+) max_ev_support = 2 scaffold_12 + intron 10384453-10384526 asmbl_8887 scaffold_12 + retained_intron 10384453-10384526 asmbl_8888 // Exon Skipping and Retention # skipped_exon 10532534-10534377 (orient:+) max_ev_support = 3 # retained_exon 10533666-10533775 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 10533666-10533775 asmbl_8892 scaffold_12 + intron_skips_exon 10532534-10534377 asmbl_8891 // Retained and Spliced Intron # retained_intron 10584344-10584440 (orient:+) max_ev_support = 1 # spliced_intron 10584344-10584440 (orient:+) max_ev_support = 1 scaffold_12 + intron 10584344-10584440 asmbl_8905 scaffold_12 + retained_intron 10584344-10584440 asmbl_8906 // Exon Skipping and Retention # skipped_exon 10604821-10607034 (orient:+) max_ev_support = 2 # retained_exon 10605600-10605683 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10605600-10605683 asmbl_8910 scaffold_12 + intron_skips_exon 10604821-10607034 asmbl_8911 // Exon Skipping and Retention # skipped_exon 10604821-10606018 (orient:+) max_ev_support = 2 # retained_exon 10605600-10605683 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10605600-10605683 asmbl_8910 scaffold_12 + intron_skips_exon 10604821-10606018 asmbl_8913 // Exon Skipping and Retention # skipped_exon 10605684-10607034 (orient:+) max_ev_support = 2 # retained_exon 10606019-10606058 (orient:+) max_ev_support = 2 scaffold_12 + retained_exons 10606019-10606058 asmbl_8913 scaffold_12 + intron_skips_exon 10605684-10607034 asmbl_8910,asmbl_8912 // Retained and Spliced Intron # retained_intron 11324172-11324264 (orient:+) max_ev_support = 3 # spliced_intron 11324172-11324264 (orient:+) max_ev_support = 3 scaffold_12 + intron 11324172-11324264 asmbl_8925 scaffold_12 + retained_intron 11324172-11324264 asmbl_8926 // Retained and Spliced Intron # retained_intron 12018186-12018385 (orient:+) max_ev_support = 1 # spliced_intron 12018186-12018385 (orient:+) max_ev_support = 4 scaffold_12 + intron 12018186-12018385 asmbl_8935,asmbl_8936,asmbl_8937 scaffold_12 + retained_intron 12018186-12018385 asmbl_8938 // Retained and Spliced Intron # retained_intron 12307824-12308257 (orient:+) max_ev_support = 2 # spliced_intron 12307824-12308257 (orient:+) max_ev_support = 1 scaffold_12 + intron 12307824-12308257 asmbl_8953 scaffold_12 + retained_intron 12307824-12308257 asmbl_8949 // Retained and Spliced Intron # retained_intron 12307824-12308727 (orient:+) max_ev_support = 2 # spliced_intron 12307824-12308727 (orient:+) max_ev_support = 1 scaffold_12 + intron 12307824-12308727 asmbl_8951,asmbl_8954,asmbl_8955 scaffold_12 + retained_intron 12307824-12308727 asmbl_8949 // Retained and Spliced Intron # retained_intron 12307824-12309134 (orient:+) max_ev_support = 2 # spliced_intron 12307824-12309134 (orient:+) max_ev_support = 2 scaffold_12 + intron 12307824-12309134 asmbl_8950,asmbl_8952 scaffold_12 + retained_intron 12307824-12309134 asmbl_8949 // Retained and Spliced Intron # retained_intron 12308782-12309134 (orient:+) max_ev_support = 2 # spliced_intron 12308782-12309134 (orient:+) max_ev_support = 1 scaffold_12 + intron 12308782-12309134 asmbl_8951,asmbl_8954,asmbl_8955 scaffold_12 + retained_intron 12308782-12309134 asmbl_8949,asmbl_8953 // Exon Skipping and Retention # skipped_exon 12307824-12309134 (orient:+) max_ev_support = 2 # retained_exon 12308728-12308781 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 12308728-12308781 asmbl_8951,asmbl_8954,asmbl_8955 scaffold_12 + intron_skips_exon 12307824-12309134 asmbl_8950,asmbl_8952 // Retained and Spliced Intron # retained_intron 12349498-12349762 (orient:+) max_ev_support = 2 # spliced_intron 12349498-12349762 (orient:+) max_ev_support = 3 scaffold_12 + intron 12349498-12349762 asmbl_8959,asmbl_8962 scaffold_12 + retained_intron 12349498-12349762 asmbl_8961 // Retained and Spliced Intron # retained_intron 12349852-12350033 (orient:+) max_ev_support = 2 # spliced_intron 12349852-12350033 (orient:+) max_ev_support = 3 scaffold_12 + intron 12349852-12350033 asmbl_8959,asmbl_8962 scaffold_12 + retained_intron 12349852-12350033 asmbl_8961 // Retained and Spliced Intron # retained_intron 12348871-12349011 (orient:+) max_ev_support = 1 # spliced_intron 12348871-12349011 (orient:+) max_ev_support = 3 scaffold_12 + intron 12348871-12349011 asmbl_8959 scaffold_12 + retained_intron 12348871-12349011 asmbl_8962 // Exon Skipping and Retention # skipped_exon 12449299-12450134 (orient:+) max_ev_support = 1 # retained_exon 12449683-12449811 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 12449683-12449811 asmbl_8969,asmbl_8971,asmbl_8972 scaffold_12 + intron_skips_exon 12449299-12450134 asmbl_8973 // Retained and Spliced Intron # retained_intron 12451819-12451938 (orient:+) max_ev_support = 1 # spliced_intron 12451819-12451938 (orient:+) max_ev_support = 1 scaffold_12 + intron 12451819-12451938 asmbl_8972 scaffold_12 + retained_intron 12451819-12451938 asmbl_8971 // Exon Skipping and Retention # skipped_exon 12451859-12451997 (orient:+) max_ev_support = 1 # retained_exon 12451939-12451978 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 12451939-12451978 asmbl_8972 scaffold_12 + intron_skips_exon 12451859-12451997 asmbl_8969 // Retained and Spliced Intron # retained_intron 12802383-12802469 (orient:+) max_ev_support = 3 # spliced_intron 12802383-12802469 (orient:+) max_ev_support = 2 scaffold_12 + intron 12802383-12802469 asmbl_8988,asmbl_8989,asmbl_8990 scaffold_12 + retained_intron 12802383-12802469 asmbl_8986 // Exon Skipping and Retention # skipped_exon 14041166-14041584 (orient:+) max_ev_support = 2 # retained_exon 14041360-14041409 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 14041360-14041409 asmbl_9010 scaffold_12 + intron_skips_exon 14041166-14041584 asmbl_9011 // Exon Skipping and Retention # skipped_exon 14041156-14041584 (orient:+) max_ev_support = 1 # retained_exon 14041360-14041409 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 14041360-14041409 asmbl_9010 scaffold_12 + intron_skips_exon 14041156-14041584 asmbl_9012 // Retained and Spliced Intron # retained_intron 14173452-14173745 (orient:+) max_ev_support = 2 # spliced_intron 14173452-14173745 (orient:+) max_ev_support = 1 scaffold_12 + intron 14173452-14173745 asmbl_9033 scaffold_12 + retained_intron 14173452-14173745 asmbl_9030,asmbl_9031,asmbl_9032 // Retained and Spliced Intron # retained_intron 14173452-14174310 (orient:+) max_ev_support = 3 # spliced_intron 14173452-14174310 (orient:+) max_ev_support = 1 scaffold_12 + intron 14173452-14174310 asmbl_9034 scaffold_12 + retained_intron 14173452-14174310 asmbl_9030,asmbl_9031,asmbl_9032 // Retained and Spliced Intron # retained_intron 14171917-14172236 (orient:+) max_ev_support = 2 # spliced_intron 14171917-14172236 (orient:+) max_ev_support = 2 scaffold_12 + intron 14171917-14172236 asmbl_9030 scaffold_12 + retained_intron 14171917-14172236 asmbl_9032 // Exon Skipping and Retention # skipped_exon 14224107-14226458 (orient:+) max_ev_support = 1 # retained_exon 14225620-14225625 (orient:+) max_ev_support = 1 scaffold_12 + retained_exons 14225620-14225625 asmbl_9037 scaffold_12 + intron_skips_exon 14224107-14226458 asmbl_9038 // Retained and Spliced Intron # retained_intron 14256759-14257074 (orient:+) max_ev_support = 2 # spliced_intron 14256759-14257074 (orient:+) max_ev_support = 1 scaffold_12 + intron 14256759-14257074 asmbl_9043 scaffold_12 + retained_intron 14256759-14257074 asmbl_9041 // Retained and Spliced Intron # retained_intron 15048311-15048677 (orient:+) max_ev_support = 1 # spliced_intron 15048311-15048677 (orient:+) max_ev_support = 3 scaffold_12 + intron 15048311-15048677 asmbl_9069 scaffold_12 + retained_intron 15048311-15048677 asmbl_9070 // Retained and Spliced Intron # retained_intron 15204227-15204314 (orient:+) max_ev_support = 3 # spliced_intron 15204227-15204314 (orient:+) max_ev_support = 3 scaffold_12 + intron 15204227-15204314 asmbl_9074 scaffold_12 + retained_intron 15204227-15204314 asmbl_9075 // Exon Skipping and Retention # skipped_exon 15212283-15213043 (orient:+) max_ev_support = 3 # retained_exon 15212685-15212743 (orient:+) max_ev_support = 3 scaffold_12 + retained_exons 15212685-15212743 asmbl_9076,asmbl_9077 scaffold_12 + intron_skips_exon 15212283-15213043 asmbl_9078 // Retained and Spliced Intron # retained_intron 15213364-15213677 (orient:+) max_ev_support = 3 # spliced_intron 15213364-15213677 (orient:+) max_ev_support = 3 scaffold_12 + intron 15213364-15213677 asmbl_9077,asmbl_9078,asmbl_9079 scaffold_12 + retained_intron 15213364-15213677 asmbl_9076 // Retained and Spliced Intron # retained_intron 15212744-15213043 (orient:+) max_ev_support = 2 # spliced_intron 15212744-15213043 (orient:+) max_ev_support = 3 scaffold_12 + intron 15212744-15213043 asmbl_9076,asmbl_9077 scaffold_12 + retained_intron 15212744-15213043 asmbl_9079 // Retained and Spliced Intron # retained_intron 15694711-15694787 (orient:+) max_ev_support = 1 # spliced_intron 15694711-15694787 (orient:+) max_ev_support = 2 scaffold_12 + intron 15694711-15694787 asmbl_9098 scaffold_12 + retained_intron 15694711-15694787 asmbl_9099 // Retained and Spliced Intron # retained_intron 16247233-16247319 (orient:+) max_ev_support = 2 # spliced_intron 16247233-16247319 (orient:+) max_ev_support = 2 scaffold_12 + intron 16247233-16247319 asmbl_9119,asmbl_9121 scaffold_12 + retained_intron 16247233-16247319 asmbl_9120,asmbl_9122 // Retained and Spliced Intron # retained_intron 16247233-16247328 (orient:+) max_ev_support = 2 # spliced_intron 16247233-16247328 (orient:+) max_ev_support = 3 scaffold_12 + intron 16247233-16247328 asmbl_9118 scaffold_12 + retained_intron 16247233-16247328 asmbl_9120,asmbl_9122 // Retained and Spliced Intron # retained_intron 16338941-16339103 (orient:+) max_ev_support = 1 # spliced_intron 16338941-16339103 (orient:+) max_ev_support = 2 scaffold_12 + intron 16338941-16339103 asmbl_9126 scaffold_12 + retained_intron 16338941-16339103 asmbl_9127 // Retained and Spliced Intron # retained_intron 16338959-16339103 (orient:+) max_ev_support = 1 # spliced_intron 16338959-16339103 (orient:+) max_ev_support = 2 scaffold_12 + intron 16338959-16339103 asmbl_9125 scaffold_12 + retained_intron 16338959-16339103 asmbl_9127 // Retained and Spliced Intron # retained_intron 16399852-16401627 (orient:+) max_ev_support = 5 # spliced_intron 16399852-16401627 (orient:+) max_ev_support = 3 scaffold_12 + intron 16399852-16401627 asmbl_9134,asmbl_9136 scaffold_12 + retained_intron 16399852-16401627 asmbl_9131,asmbl_9132,asmbl_9133 // Retained and Spliced Intron # retained_intron 16399852-16401681 (orient:+) max_ev_support = 5 # spliced_intron 16399852-16401681 (orient:+) max_ev_support = 1 scaffold_12 + intron 16399852-16401681 asmbl_9135 scaffold_12 + retained_intron 16399852-16401681 asmbl_9131,asmbl_9132,asmbl_9133 // Retained and Spliced Intron # retained_intron 16401775-16403321 (orient:+) max_ev_support = 5 # spliced_intron 16401775-16403321 (orient:+) max_ev_support = 3 scaffold_12 + intron 16401775-16403321 asmbl_9136 scaffold_12 + retained_intron 16401775-16403321 asmbl_9131,asmbl_9132,asmbl_9134,asmbl_9135 // Retained and Spliced Intron # retained_intron 16402135-16403321 (orient:+) max_ev_support = 5 # spliced_intron 16402135-16403321 (orient:+) max_ev_support = 1 scaffold_12 + intron 16402135-16403321 asmbl_9133,asmbl_9137 scaffold_12 + retained_intron 16402135-16403321 asmbl_9131,asmbl_9132,asmbl_9134,asmbl_9135 // Retained and Spliced Intron # retained_intron 16403693-16404417 (orient:+) max_ev_support = 3 # spliced_intron 16403693-16404417 (orient:+) max_ev_support = 3 scaffold_12 + intron 16403693-16404417 asmbl_9131,asmbl_9134,asmbl_9136,asmbl_9137 scaffold_12 + retained_intron 16403693-16404417 asmbl_9132,asmbl_9133,asmbl_9135 // Retained and Spliced Intron # retained_intron 1529-1643 (orient:+) max_ev_support = 1 # spliced_intron 1529-1643 (orient:+) max_ev_support = 2 scaffold_1295 + intron 1529-1643 asmbl_9258,asmbl_9261 scaffold_1295 + retained_intron 1529-1643 asmbl_9260 // Retained and Spliced Intron # retained_intron 352039-352293 (orient:-) max_ev_support = 2 # spliced_intron 352039-352293 (orient:-) max_ev_support = 3 scaffold_13 - intron 352039-352293 asmbl_9268,asmbl_9270,asmbl_9271,asmbl_9273,asmbl_9274 scaffold_13 - retained_intron 352039-352293 asmbl_9269,asmbl_9272 // Retained and Spliced Intron # retained_intron 350724-350855 (orient:-) max_ev_support = 2 # spliced_intron 350724-350855 (orient:-) max_ev_support = 3 scaffold_13 - intron 350724-350855 asmbl_9268,asmbl_9269,asmbl_9271,asmbl_9272,asmbl_9273,asmbl_9274 scaffold_13 - retained_intron 350724-350855 asmbl_9270 // Retained and Spliced Intron # retained_intron 352660-353097 (orient:-) max_ev_support = 2 # spliced_intron 352660-353097 (orient:-) max_ev_support = 3 scaffold_13 - intron 352660-353097 asmbl_9268,asmbl_9269,asmbl_9270,asmbl_9271,asmbl_9272,asmbl_9273 scaffold_13 - retained_intron 352660-353097 asmbl_9274 // Exon Skipping and Retention # skipped_exon 366181-366931 (orient:-) max_ev_support = 1 # retained_exon 366291-366561 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 366291-366561 asmbl_9275 scaffold_13 - intron_skips_exon 366181-366931 asmbl_9287 // Retained and Spliced Intron # retained_intron 360693-360785 (orient:-) max_ev_support = 3 # spliced_intron 360693-360785 (orient:-) max_ev_support = 3 scaffold_13 - intron 360693-360785 asmbl_9275,asmbl_9276,asmbl_9283,asmbl_9284,asmbl_9285,asmbl_9287,asmbl_9288 scaffold_13 - retained_intron 360693-360785 asmbl_9277,asmbl_9282 // Retained and Spliced Intron # retained_intron 381828-381913 (orient:-) max_ev_support = 1 # spliced_intron 381828-381913 (orient:-) max_ev_support = 2 scaffold_13 - intron 381828-381913 asmbl_9292 scaffold_13 - retained_intron 381828-381913 asmbl_9293,asmbl_9294 // Retained and Spliced Intron # retained_intron 381874-382053 (orient:-) max_ev_support = 1 # spliced_intron 381874-382053 (orient:-) max_ev_support = 2 scaffold_13 - intron 381874-382053 asmbl_9291,asmbl_9295 scaffold_13 - retained_intron 381874-382053 asmbl_9293,asmbl_9294 // Retained and Spliced Intron # retained_intron 400473-401576 (orient:-) max_ev_support = 2 # spliced_intron 400473-401576 (orient:-) max_ev_support = 2 scaffold_13 - intron 400473-401576 asmbl_9305,asmbl_9312,asmbl_9313,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - retained_intron 400473-401576 asmbl_9303,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311 // Retained and Spliced Intron # retained_intron 394206-394756 (orient:-) max_ev_support = 2 # spliced_intron 394206-394756 (orient:-) max_ev_support = 2 scaffold_13 - intron 394206-394756 asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317 scaffold_13 - retained_intron 394206-394756 asmbl_9305,asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 394206-395582 (orient:-) max_ev_support = 2 # spliced_intron 394206-395582 (orient:-) max_ev_support = 2 scaffold_13 - intron 394206-395582 asmbl_9310,asmbl_9311,asmbl_9318 scaffold_13 - retained_intron 394206-395582 asmbl_9305,asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 394778-395582 (orient:-) max_ev_support = 2 # spliced_intron 394778-395582 (orient:-) max_ev_support = 2 scaffold_13 - intron 394778-395582 asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317 scaffold_13 - retained_intron 394778-395582 asmbl_9305,asmbl_9312,asmbl_9313 // Exon Skipping and Retention # skipped_exon 398875-400388 (orient:-) max_ev_support = 2 # retained_exon 400050-400121 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 400050-400121 asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - intron_skips_exon 398875-400388 asmbl_9303 // Retained and Spliced Intron # retained_intron 393652-393774 (orient:-) max_ev_support = 2 # spliced_intron 393652-393774 (orient:-) max_ev_support = 2 scaffold_13 - intron 393652-393774 asmbl_9310,asmbl_9311,asmbl_9312,asmbl_9313,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - retained_intron 393652-393774 asmbl_9306,asmbl_9307,asmbl_9308,asmbl_9309 // Exon Skipping and Retention # skipped_exon 394206-395582 (orient:-) max_ev_support = 2 # retained_exon 394757-394777 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 394757-394777 asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9316,asmbl_9317 scaffold_13 - intron_skips_exon 394206-395582 asmbl_9310,asmbl_9311,asmbl_9318 // Exon Skipping and Retention # skipped_exon 405375-406892 (orient:-) max_ev_support = 2 # retained_exon 405973-406064 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 405973-406064 asmbl_9309,asmbl_9310,asmbl_9315,asmbl_9318 scaffold_13 - intron_skips_exon 405375-406892 asmbl_9305,asmbl_9308,asmbl_9311,asmbl_9312,asmbl_9314,asmbl_9316 // Retained and Spliced Intron # retained_intron 398875-400049 (orient:-) max_ev_support = 2 # spliced_intron 398875-400049 (orient:-) max_ev_support = 2 scaffold_13 - intron 398875-400049 asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - retained_intron 398875-400049 asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 398875-400388 (orient:-) max_ev_support = 2 # spliced_intron 398875-400388 (orient:-) max_ev_support = 2 scaffold_13 - intron 398875-400388 asmbl_9303 scaffold_13 - retained_intron 398875-400388 asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 400122-400388 (orient:-) max_ev_support = 2 # spliced_intron 400122-400388 (orient:-) max_ev_support = 2 scaffold_13 - intron 400122-400388 asmbl_9305,asmbl_9307,asmbl_9308,asmbl_9309,asmbl_9310,asmbl_9311,asmbl_9314,asmbl_9315,asmbl_9316,asmbl_9317,asmbl_9318 scaffold_13 - retained_intron 400122-400388 asmbl_9312,asmbl_9313 // Retained and Spliced Intron # retained_intron 530723-531277 (orient:-) max_ev_support = 3 # spliced_intron 530723-531277 (orient:-) max_ev_support = 1 scaffold_13 - intron 530723-531277 asmbl_9321 scaffold_13 - retained_intron 530723-531277 asmbl_9320 // Retained and Spliced Intron # retained_intron 537327-537809 (orient:-) max_ev_support = 3 # spliced_intron 537327-537809 (orient:-) max_ev_support = 2 scaffold_13 - intron 537327-537809 asmbl_9324,asmbl_9325 scaffold_13 - retained_intron 537327-537809 asmbl_9322,asmbl_9323,asmbl_9326 // Retained and Spliced Intron # retained_intron 534534-534705 (orient:-) max_ev_support = 2 # spliced_intron 534534-534705 (orient:-) max_ev_support = 3 scaffold_13 - intron 534534-534705 asmbl_9322,asmbl_9324,asmbl_9325,asmbl_9326 scaffold_13 - retained_intron 534534-534705 asmbl_9323 // Retained and Spliced Intron # retained_intron 663297-663385 (orient:-) max_ev_support = 2 # spliced_intron 663297-663385 (orient:-) max_ev_support = 3 scaffold_13 - intron 663297-663385 asmbl_9327,asmbl_9328,asmbl_9329,asmbl_9330 scaffold_13 - retained_intron 663297-663385 asmbl_9331 // Retained and Spliced Intron # retained_intron 894021-894643 (orient:-) max_ev_support = 2 # spliced_intron 894021-894643 (orient:-) max_ev_support = 1 scaffold_13 - intron 894021-894643 asmbl_9337 scaffold_13 - retained_intron 894021-894643 asmbl_9338,asmbl_9339,asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9344,asmbl_9345,asmbl_9346,asmbl_9347 // Exon Skipping and Retention # skipped_exon 902810-904334 (orient:-) max_ev_support = 2 # retained_exon 903026-903309 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 903026-903309 asmbl_9347 scaffold_13 - intron_skips_exon 902810-904334 asmbl_9340,asmbl_9341,asmbl_9342,asmbl_9344,asmbl_9345,asmbl_9346 // Retained and Spliced Intron # retained_intron 925797-925912 (orient:-) max_ev_support = 1 # spliced_intron 925797-925912 (orient:-) max_ev_support = 2 scaffold_13 - intron 925797-925912 asmbl_9350 scaffold_13 - retained_intron 925797-925912 asmbl_9351 // Retained and Spliced Intron # retained_intron 989090-989193 (orient:-) max_ev_support = 1 # spliced_intron 989090-989193 (orient:-) max_ev_support = 2 scaffold_13 - intron 989090-989193 asmbl_9356 scaffold_13 - retained_intron 989090-989193 asmbl_9357 // Exon Skipping and Retention # skipped_exon 1361221-1361994 (orient:-) max_ev_support = 1 # retained_exon 1361665-1361791 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1361665-1361791 asmbl_9363 scaffold_13 - intron_skips_exon 1361221-1361994 asmbl_9365 // Exon Skipping and Retention # skipped_exon 1380070-1380423 (orient:-) max_ev_support = 1 # retained_exon 1380204-1380337 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1380204-1380337 asmbl_9366,asmbl_9369 scaffold_13 - intron_skips_exon 1380070-1380423 asmbl_9367,asmbl_9368 // Exon Skipping and Retention # skipped_exon 1378319-1378521 (orient:-) max_ev_support = 2 # retained_exon 1378408-1378452 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 1378408-1378452 asmbl_9367,asmbl_9369 scaffold_13 - intron_skips_exon 1378319-1378521 asmbl_9366,asmbl_9368,asmbl_9370 // Exon Skipping and Retention # skipped_exon 1524599-1526885 (orient:-) max_ev_support = 3 # retained_exon 1526310-1526387 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 1526310-1526387 asmbl_9377,asmbl_9378 scaffold_13 - intron_skips_exon 1524599-1526885 asmbl_9376,asmbl_9380 // Retained and Spliced Intron # retained_intron 2271926-2272065 (orient:-) max_ev_support = 2 # spliced_intron 2271926-2272065 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271926-2272065 asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406 scaffold_13 - retained_intron 2271926-2272065 asmbl_9399,asmbl_9403,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2274573-2274820 (orient:-) max_ev_support = 2 # spliced_intron 2274573-2274820 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274573-2274820 asmbl_9402,asmbl_9403 scaffold_13 - retained_intron 2274573-2274820 asmbl_9400,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2274573-2277261 (orient:-) max_ev_support = 2 # spliced_intron 2274573-2277261 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274573-2277261 asmbl_9401,asmbl_9406 scaffold_13 - retained_intron 2274573-2277261 asmbl_9400,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2274959-2277261 (orient:-) max_ev_support = 2 # spliced_intron 2274959-2277261 (orient:-) max_ev_support = 2 scaffold_13 - intron 2274959-2277261 asmbl_9402 scaffold_13 - retained_intron 2274959-2277261 asmbl_9400,asmbl_9403,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2270204-2270425 (orient:-) max_ev_support = 1 # spliced_intron 2270204-2270425 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270204-2270425 asmbl_9400,asmbl_9402,asmbl_9403 scaffold_13 - retained_intron 2270204-2270425 asmbl_9401,asmbl_9404,asmbl_9405 // Exon Skipping and Retention # skipped_exon 2274573-2277261 (orient:-) max_ev_support = 2 # retained_exon 2274821-2274958 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 2274821-2274958 asmbl_9402 scaffold_13 - intron_skips_exon 2274573-2277261 asmbl_9401,asmbl_9406 // Retained and Spliced Intron # retained_intron 2271676-2271815 (orient:-) max_ev_support = 1 # spliced_intron 2271676-2271815 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271676-2271815 asmbl_9400,asmbl_9401,asmbl_9402 scaffold_13 - retained_intron 2271676-2271815 asmbl_9403,asmbl_9404,asmbl_9405,asmbl_9406 // Retained and Spliced Intron # retained_intron 2272160-2272772 (orient:-) max_ev_support = 1 # spliced_intron 2272160-2272772 (orient:-) max_ev_support = 2 scaffold_13 - intron 2272160-2272772 asmbl_9399,asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406 scaffold_13 - retained_intron 2272160-2272772 asmbl_9403,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2272879-2273221 (orient:-) max_ev_support = 1 # spliced_intron 2272879-2273221 (orient:-) max_ev_support = 2 scaffold_13 - intron 2272879-2273221 asmbl_9399,asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9406 scaffold_13 - retained_intron 2272879-2273221 asmbl_9403,asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2270481-2270608 (orient:-) max_ev_support = 1 # spliced_intron 2270481-2270608 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270481-2270608 asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403,asmbl_9405 scaffold_13 - retained_intron 2270481-2270608 asmbl_9404 // Retained and Spliced Intron # retained_intron 2270688-2270802 (orient:-) max_ev_support = 1 # spliced_intron 2270688-2270802 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270688-2270802 asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403 scaffold_13 - retained_intron 2270688-2270802 asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2270956-2271084 (orient:-) max_ev_support = 1 # spliced_intron 2270956-2271084 (orient:-) max_ev_support = 2 scaffold_13 - intron 2270956-2271084 asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403 scaffold_13 - retained_intron 2270956-2271084 asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2271214-2271358 (orient:-) max_ev_support = 1 # spliced_intron 2271214-2271358 (orient:-) max_ev_support = 2 scaffold_13 - intron 2271214-2271358 asmbl_9400,asmbl_9401,asmbl_9402,asmbl_9403 scaffold_13 - retained_intron 2271214-2271358 asmbl_9404,asmbl_9405 // Retained and Spliced Intron # retained_intron 2653329-2653423 (orient:-) max_ev_support = 1 # spliced_intron 2653329-2653423 (orient:-) max_ev_support = 1 scaffold_13 - intron 2653329-2653423 asmbl_9429 scaffold_13 - retained_intron 2653329-2653423 asmbl_9427 // Retained and Spliced Intron # retained_intron 2653343-2653584 (orient:-) max_ev_support = 1 # spliced_intron 2653343-2653584 (orient:-) max_ev_support = 2 scaffold_13 - intron 2653343-2653584 asmbl_9425,asmbl_9428 scaffold_13 - retained_intron 2653343-2653584 asmbl_9427 // Retained and Spliced Intron # retained_intron 2652683-2652800 (orient:-) max_ev_support = 1 # spliced_intron 2652683-2652800 (orient:-) max_ev_support = 2 scaffold_13 - intron 2652683-2652800 asmbl_9425,asmbl_9427,asmbl_9429 scaffold_13 - retained_intron 2652683-2652800 asmbl_9428 // Exon Skipping and Retention # skipped_exon 2660618-2662993 (orient:-) max_ev_support = 2 # retained_exon 2662068-2662117 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 2662068-2662117 asmbl_9431 scaffold_13 - intron_skips_exon 2660618-2662993 asmbl_9430 // Exon Skipping and Retention # skipped_exon 2976996-2977755 (orient:-) max_ev_support = 1 # retained_exon 2977431-2977565 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 2977431-2977565 asmbl_9457 scaffold_13 - intron_skips_exon 2976996-2977755 asmbl_9459 // Retained and Spliced Intron # retained_intron 3021498-3021692 (orient:-) max_ev_support = 1 # spliced_intron 3021498-3021692 (orient:-) max_ev_support = 2 scaffold_13 - intron 3021498-3021692 asmbl_9464 scaffold_13 - retained_intron 3021498-3021692 asmbl_9465 // Retained and Spliced Intron # retained_intron 3027963-3028113 (orient:-) max_ev_support = 2 # spliced_intron 3027963-3028113 (orient:-) max_ev_support = 1 scaffold_13 - intron 3027963-3028113 asmbl_9468 scaffold_13 - retained_intron 3027963-3028113 asmbl_9467 // Retained and Spliced Intron # retained_intron 3054628-3054794 (orient:-) max_ev_support = 4 # spliced_intron 3054628-3054794 (orient:-) max_ev_support = 1 scaffold_13 - intron 3054628-3054794 asmbl_9472 scaffold_13 - retained_intron 3054628-3054794 asmbl_9470,asmbl_9471 // Retained and Spliced Intron # retained_intron 3055042-3055287 (orient:-) max_ev_support = 1 # spliced_intron 3055042-3055287 (orient:-) max_ev_support = 2 scaffold_13 - intron 3055042-3055287 asmbl_9470,asmbl_9472 scaffold_13 - retained_intron 3055042-3055287 asmbl_9471 // Retained and Spliced Intron # retained_intron 3092016-3092119 (orient:-) max_ev_support = 1 # spliced_intron 3092016-3092119 (orient:-) max_ev_support = 1 scaffold_13 - intron 3092016-3092119 asmbl_9474 scaffold_13 - retained_intron 3092016-3092119 asmbl_9475 // Retained and Spliced Intron # retained_intron 3322991-3323068 (orient:-) max_ev_support = 2 # spliced_intron 3322991-3323068 (orient:-) max_ev_support = 3 scaffold_13 - intron 3322991-3323068 asmbl_9489,asmbl_9491 scaffold_13 - retained_intron 3322991-3323068 asmbl_9490 // Retained and Spliced Intron # retained_intron 3352875-3353012 (orient:-) max_ev_support = 1 # spliced_intron 3352875-3353012 (orient:-) max_ev_support = 2 scaffold_13 - intron 3352875-3353012 asmbl_9495 scaffold_13 - retained_intron 3352875-3353012 asmbl_9496 // Retained and Spliced Intron # retained_intron 3352902-3353012 (orient:-) max_ev_support = 1 # spliced_intron 3352902-3353012 (orient:-) max_ev_support = 1 scaffold_13 - intron 3352902-3353012 asmbl_9497 scaffold_13 - retained_intron 3352902-3353012 asmbl_9496 // Retained and Spliced Intron # retained_intron 3585540-3585773 (orient:-) max_ev_support = 3 # spliced_intron 3585540-3585773 (orient:-) max_ev_support = 2 scaffold_13 - intron 3585540-3585773 asmbl_9515 scaffold_13 - retained_intron 3585540-3585773 asmbl_9514 // Exon Skipping and Retention # skipped_exon 3613014-3614593 (orient:-) max_ev_support = 2 # retained_exon 3613390-3613446 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 3613390-3613446 asmbl_9520 scaffold_13 - intron_skips_exon 3613014-3614593 asmbl_9518 // Retained and Spliced Intron # retained_intron 3704686-3704754 (orient:-) max_ev_support = 2 # spliced_intron 3704686-3704754 (orient:-) max_ev_support = 1 scaffold_13 - intron 3704686-3704754 asmbl_9526 scaffold_13 - retained_intron 3704686-3704754 asmbl_9523,asmbl_9524,asmbl_9525,asmbl_9527 // Exon Skipping and Retention # skipped_exon 3705037-3707221 (orient:-) max_ev_support = 1 # retained_exon 3705325-3705935 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 3705325-3705935 asmbl_9523 scaffold_13 - intron_skips_exon 3705037-3707221 asmbl_9527 // Retained and Spliced Intron # retained_intron 3704479-3704514 (orient:-) max_ev_support = 1 # spliced_intron 3704479-3704514 (orient:-) max_ev_support = 1 scaffold_13 - intron 3704479-3704514 asmbl_9523,asmbl_9525,asmbl_9526,asmbl_9527 scaffold_13 - retained_intron 3704479-3704514 asmbl_9524 // Retained and Spliced Intron # retained_intron 3777369-3777440 (orient:-) max_ev_support = 2 # spliced_intron 3777369-3777440 (orient:-) max_ev_support = 2 scaffold_13 - intron 3777369-3777440 asmbl_9537 scaffold_13 - retained_intron 3777369-3777440 asmbl_9538 // Retained and Spliced Intron # retained_intron 3810685-3810836 (orient:-) max_ev_support = 1 # spliced_intron 3810685-3810836 (orient:-) max_ev_support = 2 scaffold_13 - intron 3810685-3810836 asmbl_9545,asmbl_9547 scaffold_13 - retained_intron 3810685-3810836 asmbl_9548,asmbl_9549 // Retained and Spliced Intron # retained_intron 3811189-3811295 (orient:-) max_ev_support = 1 # spliced_intron 3811189-3811295 (orient:-) max_ev_support = 2 scaffold_13 - intron 3811189-3811295 asmbl_9545,asmbl_9549 scaffold_13 - retained_intron 3811189-3811295 asmbl_9548 // Retained and Spliced Intron # retained_intron 3999070-3999310 (orient:-) max_ev_support = 1 # spliced_intron 3999070-3999310 (orient:-) max_ev_support = 2 scaffold_13 - intron 3999070-3999310 asmbl_9563,asmbl_9564 scaffold_13 - retained_intron 3999070-3999310 asmbl_9565 // Exon Skipping and Retention # skipped_exon 4243305-4244305 (orient:-) max_ev_support = 2 # retained_exon 4243881-4243955 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 4243881-4243955 asmbl_9573,asmbl_9575,asmbl_9578 scaffold_13 - intron_skips_exon 4243305-4244305 asmbl_9574,asmbl_9576,asmbl_9577 // Retained and Spliced Intron # retained_intron 4239686-4240251 (orient:-) max_ev_support = 2 # spliced_intron 4239686-4240251 (orient:-) max_ev_support = 2 scaffold_13 - intron 4239686-4240251 asmbl_9573,asmbl_9576,asmbl_9577 scaffold_13 - retained_intron 4239686-4240251 asmbl_9574,asmbl_9575 // Retained and Spliced Intron # retained_intron 4461177-4462126 (orient:-) max_ev_support = 4 # spliced_intron 4461177-4462126 (orient:-) max_ev_support = 1 scaffold_13 - intron 4461177-4462126 asmbl_9596 scaffold_13 - retained_intron 4461177-4462126 asmbl_9594 // Retained and Spliced Intron # retained_intron 4462344-4462579 (orient:-) max_ev_support = 2 # spliced_intron 4462344-4462579 (orient:-) max_ev_support = 2 scaffold_13 - intron 4462344-4462579 asmbl_9594,asmbl_9596 scaffold_13 - retained_intron 4462344-4462579 asmbl_9595 // Retained and Spliced Intron # retained_intron 4602251-4602712 (orient:-) max_ev_support = 2 # spliced_intron 4602251-4602712 (orient:-) max_ev_support = 1 scaffold_13 - intron 4602251-4602712 asmbl_9606 scaffold_13 - retained_intron 4602251-4602712 asmbl_9602,asmbl_9609 // Retained and Spliced Intron # retained_intron 4602269-4602712 (orient:-) max_ev_support = 2 # spliced_intron 4602269-4602712 (orient:-) max_ev_support = 2 scaffold_13 - intron 4602269-4602712 asmbl_9610 scaffold_13 - retained_intron 4602269-4602712 asmbl_9602,asmbl_9609 // Retained and Spliced Intron # retained_intron 4602805-4604926 (orient:-) max_ev_support = 3 # spliced_intron 4602805-4604926 (orient:-) max_ev_support = 2 scaffold_13 - intron 4602805-4604926 asmbl_9606,asmbl_9610 scaffold_13 - retained_intron 4602805-4604926 asmbl_9602 // Retained and Spliced Intron # retained_intron 4601282-4601369 (orient:-) max_ev_support = 2 # spliced_intron 4601282-4601369 (orient:-) max_ev_support = 2 scaffold_13 - intron 4601282-4601369 asmbl_9602,asmbl_9604,asmbl_9605,asmbl_9606 scaffold_13 - retained_intron 4601282-4601369 asmbl_9603 // Exon Skipping and Retention # skipped_exon 4601442-4602712 (orient:-) max_ev_support = 1 # retained_exon 4602224-4602250 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 4602224-4602250 asmbl_9606 scaffold_13 - intron_skips_exon 4601442-4602712 asmbl_9605 // Retained and Spliced Intron # retained_intron 5106775-5107098 (orient:-) max_ev_support = 2 # spliced_intron 5106775-5107098 (orient:-) max_ev_support = 2 scaffold_13 - intron 5106775-5107098 asmbl_9633 scaffold_13 - retained_intron 5106775-5107098 asmbl_9632 // Retained and Spliced Intron # retained_intron 5575373-5575506 (orient:-) max_ev_support = 2 # spliced_intron 5575373-5575506 (orient:-) max_ev_support = 1 scaffold_13 - intron 5575373-5575506 asmbl_9659 scaffold_13 - retained_intron 5575373-5575506 asmbl_9657,asmbl_9658 // Exon Skipping and Retention # skipped_exon 5598978-5599604 (orient:-) max_ev_support = 1 # retained_exon 5599202-5599305 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 5599202-5599305 asmbl_9661 scaffold_13 - intron_skips_exon 5598978-5599604 asmbl_9660 // Retained and Spliced Intron # retained_intron 5701364-5701646 (orient:-) max_ev_support = 3 # spliced_intron 5701364-5701646 (orient:-) max_ev_support = 2 scaffold_13 - intron 5701364-5701646 asmbl_9669,asmbl_9670 scaffold_13 - retained_intron 5701364-5701646 asmbl_9668 // Exon Skipping and Retention # skipped_exon 5736319-5737303 (orient:-) max_ev_support = 2 # retained_exon 5736655-5736750 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 5736655-5736750 asmbl_9680 scaffold_13 - intron_skips_exon 5736319-5737303 asmbl_9679 // Retained and Spliced Intron # retained_intron 5841697-5842514 (orient:-) max_ev_support = 1 # spliced_intron 5841697-5842514 (orient:-) max_ev_support = 2 scaffold_13 - intron 5841697-5842514 asmbl_9692 scaffold_13 - retained_intron 5841697-5842514 asmbl_9696,asmbl_9697 // Exon Skipping and Retention # skipped_exon 5919688-5920404 (orient:-) max_ev_support = 3 # retained_exon 5920103-5920192 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 5920103-5920192 asmbl_9708 scaffold_13 - intron_skips_exon 5919688-5920404 asmbl_9709 // Retained and Spliced Intron # retained_intron 5949932-5950148 (orient:-) max_ev_support = 1 # spliced_intron 5949932-5950148 (orient:-) max_ev_support = 2 scaffold_13 - intron 5949932-5950148 asmbl_9716,asmbl_9718,asmbl_9719,asmbl_9720 scaffold_13 - retained_intron 5949932-5950148 asmbl_9717,asmbl_9721 // Exon Skipping and Retention # skipped_exon 6046307-6048622 (orient:-) max_ev_support = 2 # retained_exon 6047140-6047202 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 6047140-6047202 asmbl_9726 scaffold_13 - intron_skips_exon 6046307-6048622 asmbl_9728,asmbl_9729 // Exon Skipping and Retention # skipped_exon 6047203-6049582 (orient:-) max_ev_support = 2 # retained_exon 6048623-6048724 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 6048623-6048724 asmbl_9728,asmbl_9729 scaffold_13 - intron_skips_exon 6047203-6049582 asmbl_9726 // Retained and Spliced Intron # retained_intron 6431003-6431154 (orient:-) max_ev_support = 4 # spliced_intron 6431003-6431154 (orient:-) max_ev_support = 1 scaffold_13 - intron 6431003-6431154 asmbl_9752,asmbl_9753 scaffold_13 - retained_intron 6431003-6431154 asmbl_9745,asmbl_9749,asmbl_9750,asmbl_9751 // Retained and Spliced Intron # retained_intron 6434028-6434177 (orient:-) max_ev_support = 2 # spliced_intron 6434028-6434177 (orient:-) max_ev_support = 2 scaffold_13 - intron 6434028-6434177 asmbl_9750,asmbl_9751,asmbl_9752,asmbl_9753 scaffold_13 - retained_intron 6434028-6434177 asmbl_9749 // Retained and Spliced Intron # retained_intron 6602967-6603353 (orient:-) max_ev_support = 2 # spliced_intron 6602967-6603353 (orient:-) max_ev_support = 2 scaffold_13 - intron 6602967-6603353 asmbl_9763 scaffold_13 - retained_intron 6602967-6603353 asmbl_9762 // Retained and Spliced Intron # retained_intron 6619004-6619115 (orient:-) max_ev_support = 2 # spliced_intron 6619004-6619115 (orient:-) max_ev_support = 3 scaffold_13 - intron 6619004-6619115 asmbl_9766 scaffold_13 - retained_intron 6619004-6619115 asmbl_9767 // Retained and Spliced Intron # retained_intron 6628167-6628496 (orient:-) max_ev_support = 2 # spliced_intron 6628167-6628496 (orient:-) max_ev_support = 3 scaffold_13 - intron 6628167-6628496 asmbl_9768 scaffold_13 - retained_intron 6628167-6628496 asmbl_9769 // Retained and Spliced Intron # retained_intron 6949076-6950695 (orient:-) max_ev_support = 2 # spliced_intron 6949076-6950695 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949076-6950695 asmbl_9777 scaffold_13 - retained_intron 6949076-6950695 asmbl_9775,asmbl_9776 // Retained and Spliced Intron # retained_intron 6949079-6949233 (orient:-) max_ev_support = 2 # spliced_intron 6949079-6949233 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949079-6949233 asmbl_9778 scaffold_13 - retained_intron 6949079-6949233 asmbl_9775,asmbl_9776 // Retained and Spliced Intron # retained_intron 6949079-6950695 (orient:-) max_ev_support = 2 # spliced_intron 6949079-6950695 (orient:-) max_ev_support = 1 scaffold_13 - intron 6949079-6950695 asmbl_9779,asmbl_9780 scaffold_13 - retained_intron 6949079-6950695 asmbl_9775,asmbl_9776 // Retained and Spliced Intron # retained_intron 6950776-6951096 (orient:-) max_ev_support = 2 # spliced_intron 6950776-6951096 (orient:-) max_ev_support = 1 scaffold_13 - intron 6950776-6951096 asmbl_9779 scaffold_13 - retained_intron 6950776-6951096 asmbl_9775 // Retained and Spliced Intron # retained_intron 6950776-6951100 (orient:-) max_ev_support = 2 # spliced_intron 6950776-6951100 (orient:-) max_ev_support = 1 scaffold_13 - intron 6950776-6951100 asmbl_9776,asmbl_9777,asmbl_9778,asmbl_9780 scaffold_13 - retained_intron 6950776-6951100 asmbl_9775 // Retained and Spliced Intron # retained_intron 7002522-7002602 (orient:-) max_ev_support = 1 # spliced_intron 7002522-7002602 (orient:-) max_ev_support = 2 scaffold_13 - intron 7002522-7002602 asmbl_9787 scaffold_13 - retained_intron 7002522-7002602 asmbl_9788 // Retained and Spliced Intron # retained_intron 7085089-7085351 (orient:-) max_ev_support = 1 # spliced_intron 7085089-7085351 (orient:-) max_ev_support = 2 scaffold_13 - intron 7085089-7085351 asmbl_9807 scaffold_13 - retained_intron 7085089-7085351 asmbl_9808 // Retained and Spliced Intron # retained_intron 7085246-7085351 (orient:-) max_ev_support = 1 # spliced_intron 7085246-7085351 (orient:-) max_ev_support = 1 scaffold_13 - intron 7085246-7085351 asmbl_9809 scaffold_13 - retained_intron 7085246-7085351 asmbl_9808 // Retained and Spliced Intron # retained_intron 7192850-7192955 (orient:-) max_ev_support = 2 # spliced_intron 7192850-7192955 (orient:-) max_ev_support = 1 scaffold_13 - intron 7192850-7192955 asmbl_9826,asmbl_9827 scaffold_13 - retained_intron 7192850-7192955 asmbl_9821 // Retained and Spliced Intron # retained_intron 7192853-7192955 (orient:-) max_ev_support = 2 # spliced_intron 7192853-7192955 (orient:-) max_ev_support = 2 scaffold_13 - intron 7192853-7192955 asmbl_9818,asmbl_9819,asmbl_9820,asmbl_9825,asmbl_9828 scaffold_13 - retained_intron 7192853-7192955 asmbl_9821 // Exon Skipping and Retention # skipped_exon 7268676-7269850 (orient:-) max_ev_support = 1 # retained_exon 7269334-7269452 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7269334-7269452 asmbl_9829,asmbl_9833 scaffold_13 - intron_skips_exon 7268676-7269850 asmbl_9830,asmbl_9831 // Retained and Spliced Intron # retained_intron 7266430-7266595 (orient:-) max_ev_support = 1 # spliced_intron 7266430-7266595 (orient:-) max_ev_support = 2 scaffold_13 - intron 7266430-7266595 asmbl_9829,asmbl_9830,asmbl_9831 scaffold_13 - retained_intron 7266430-7266595 asmbl_9833 // Retained and Spliced Intron # retained_intron 7501582-7501940 (orient:-) max_ev_support = 5 # spliced_intron 7501582-7501940 (orient:-) max_ev_support = 5 scaffold_13 - intron 7501582-7501940 asmbl_9843,asmbl_9846,asmbl_9847,asmbl_9849,asmbl_9850,asmbl_9851 scaffold_13 - retained_intron 7501582-7501940 asmbl_9844,asmbl_9845,asmbl_9848 // Exon Skipping and Retention # skipped_exon 7504347-7506710 (orient:-) max_ev_support = 2 # retained_exon 7504556-7504603 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7504556-7504603 asmbl_9845,asmbl_9846,asmbl_9851 scaffold_13 - intron_skips_exon 7504347-7506710 asmbl_9844 // Exon Skipping and Retention # skipped_exon 7504604-7506710 (orient:-) max_ev_support = 2 # retained_exon 7505395-7506114 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7505395-7506114 asmbl_9848,asmbl_9850 scaffold_13 - intron_skips_exon 7504604-7506710 asmbl_9845,asmbl_9846,asmbl_9851 // Retained and Spliced Intron # retained_intron 7507453-7507966 (orient:-) max_ev_support = 1 # spliced_intron 7507453-7507966 (orient:-) max_ev_support = 2 scaffold_13 - intron 7507453-7507966 asmbl_9844,asmbl_9845,asmbl_9846,asmbl_9850 scaffold_13 - retained_intron 7507453-7507966 asmbl_9848,asmbl_9851 // Exon Skipping and Retention # skipped_exon 7717856-7718307 (orient:-) max_ev_support = 2 # retained_exon 7718019-7718107 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7718019-7718107 asmbl_9864 scaffold_13 - intron_skips_exon 7717856-7718307 asmbl_9863 // Retained and Spliced Intron # retained_intron 7717718-7717809 (orient:-) max_ev_support = 1 # spliced_intron 7717718-7717809 (orient:-) max_ev_support = 2 scaffold_13 - intron 7717718-7717809 asmbl_9863,asmbl_9864,asmbl_9866 scaffold_13 - retained_intron 7717718-7717809 asmbl_9865 // Retained and Spliced Intron # retained_intron 7717856-7718018 (orient:-) max_ev_support = 1 # spliced_intron 7717856-7718018 (orient:-) max_ev_support = 2 scaffold_13 - intron 7717856-7718018 asmbl_9864,asmbl_9865 scaffold_13 - retained_intron 7717856-7718018 asmbl_9866 // Retained and Spliced Intron # retained_intron 7719414-7719504 (orient:-) max_ev_support = 1 # spliced_intron 7719414-7719504 (orient:-) max_ev_support = 3 scaffold_13 - intron 7719414-7719504 asmbl_9863,asmbl_9864 scaffold_13 - retained_intron 7719414-7719504 asmbl_9867 // Retained and Spliced Intron # retained_intron 7935394-7935495 (orient:-) max_ev_support = 2 # spliced_intron 7935394-7935495 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935394-7935495 asmbl_9874,asmbl_9875,asmbl_9876,asmbl_9877 scaffold_13 - retained_intron 7935394-7935495 asmbl_9873 // Retained and Spliced Intron # retained_intron 7935604-7935878 (orient:-) max_ev_support = 2 # spliced_intron 7935604-7935878 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935604-7935878 asmbl_9874,asmbl_9877 scaffold_13 - retained_intron 7935604-7935878 asmbl_9875,asmbl_9876 // Retained and Spliced Intron # retained_intron 7936040-7936337 (orient:-) max_ev_support = 2 # spliced_intron 7936040-7936337 (orient:-) max_ev_support = 2 scaffold_13 - intron 7936040-7936337 asmbl_9874,asmbl_9877 scaffold_13 - retained_intron 7936040-7936337 asmbl_9875,asmbl_9876 // Retained and Spliced Intron # retained_intron 7934786-7934861 (orient:-) max_ev_support = 2 # spliced_intron 7934786-7934861 (orient:-) max_ev_support = 2 scaffold_13 - intron 7934786-7934861 asmbl_9874,asmbl_9875 scaffold_13 - retained_intron 7934786-7934861 asmbl_9876,asmbl_9877 // Retained and Spliced Intron # retained_intron 7935012-7935165 (orient:-) max_ev_support = 2 # spliced_intron 7935012-7935165 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935012-7935165 asmbl_9873 scaffold_13 - retained_intron 7935012-7935165 asmbl_9876,asmbl_9877 // Retained and Spliced Intron # retained_intron 7935012-7935207 (orient:-) max_ev_support = 2 # spliced_intron 7935012-7935207 (orient:-) max_ev_support = 2 scaffold_13 - intron 7935012-7935207 asmbl_9874,asmbl_9875 scaffold_13 - retained_intron 7935012-7935207 asmbl_9876,asmbl_9877 // Exon Skipping and Retention # skipped_exon 7942059-7942628 (orient:-) max_ev_support = 2 # retained_exon 7942303-7942323 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 7942303-7942323 asmbl_9879 scaffold_13 - intron_skips_exon 7942059-7942628 asmbl_9878 // Retained and Spliced Intron # retained_intron 7965217-7965352 (orient:-) max_ev_support = 1 # spliced_intron 7965217-7965352 (orient:-) max_ev_support = 2 scaffold_13 - intron 7965217-7965352 asmbl_9882 scaffold_13 - retained_intron 7965217-7965352 asmbl_9883 // Retained and Spliced Intron # retained_intron 7991437-7991929 (orient:-) max_ev_support = 2 # spliced_intron 7991437-7991929 (orient:-) max_ev_support = 2 scaffold_13 - intron 7991437-7991929 asmbl_9885,asmbl_9891 scaffold_13 - retained_intron 7991437-7991929 asmbl_9886,asmbl_9887 // Retained and Spliced Intron # retained_intron 8022246-8022334 (orient:-) max_ev_support = 2 # spliced_intron 8022246-8022334 (orient:-) max_ev_support = 1 scaffold_13 - intron 8022246-8022334 asmbl_9894,asmbl_9895 scaffold_13 - retained_intron 8022246-8022334 asmbl_9893 // Retained and Spliced Intron # retained_intron 8166668-8166859 (orient:-) max_ev_support = 1 # spliced_intron 8166668-8166859 (orient:-) max_ev_support = 1 scaffold_13 - intron 8166668-8166859 asmbl_9903 scaffold_13 - retained_intron 8166668-8166859 asmbl_9901 // Retained and Spliced Intron # retained_intron 8163692-8164029 (orient:-) max_ev_support = 1 # spliced_intron 8163692-8164029 (orient:-) max_ev_support = 1 scaffold_13 - intron 8163692-8164029 asmbl_9901,asmbl_9903 scaffold_13 - retained_intron 8163692-8164029 asmbl_9902 // Retained and Spliced Intron # retained_intron 8237557-8237860 (orient:-) max_ev_support = 1 # spliced_intron 8237557-8237860 (orient:-) max_ev_support = 2 scaffold_13 - intron 8237557-8237860 asmbl_9918,asmbl_9921 scaffold_13 - retained_intron 8237557-8237860 asmbl_9919 // Retained and Spliced Intron # retained_intron 8237956-8238073 (orient:-) max_ev_support = 1 # spliced_intron 8237956-8238073 (orient:-) max_ev_support = 2 scaffold_13 - intron 8237956-8238073 asmbl_9918,asmbl_9921 scaffold_13 - retained_intron 8237956-8238073 asmbl_9919 // Retained and Spliced Intron # retained_intron 8235692-8236213 (orient:-) max_ev_support = 1 # spliced_intron 8235692-8236213 (orient:-) max_ev_support = 2 scaffold_13 - intron 8235692-8236213 asmbl_9918,asmbl_9919,asmbl_9920 scaffold_13 - retained_intron 8235692-8236213 asmbl_9921 // Retained and Spliced Intron # retained_intron 8715359-8715468 (orient:-) max_ev_support = 2 # spliced_intron 8715359-8715468 (orient:-) max_ev_support = 2 scaffold_13 - intron 8715359-8715468 asmbl_9929 scaffold_13 - retained_intron 8715359-8715468 asmbl_9928 // Exon Skipping and Retention # skipped_exon 8809211-8810964 (orient:-) max_ev_support = 1 # retained_exon 8810472-8810521 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 8810472-8810521 asmbl_9940,asmbl_9943,asmbl_9944 scaffold_13 - intron_skips_exon 8809211-8810964 asmbl_9945 // Exon Skipping and Retention # skipped_exon 8805240-8806347 (orient:-) max_ev_support = 1 # retained_exon 8805849-8805902 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 8805849-8805902 asmbl_9943,asmbl_9944,asmbl_9945 scaffold_13 - intron_skips_exon 8805240-8806347 asmbl_9946 // Retained and Spliced Intron # retained_intron 8831245-8831460 (orient:-) max_ev_support = 2 # spliced_intron 8831245-8831460 (orient:-) max_ev_support = 2 scaffold_13 - intron 8831245-8831460 asmbl_9952 scaffold_13 - retained_intron 8831245-8831460 asmbl_9951 // Retained and Spliced Intron # retained_intron 8831597-8831757 (orient:-) max_ev_support = 2 # spliced_intron 8831597-8831757 (orient:-) max_ev_support = 2 scaffold_13 - intron 8831597-8831757 asmbl_9952 scaffold_13 - retained_intron 8831597-8831757 asmbl_9951 // Retained and Spliced Intron # retained_intron 8951830-8951935 (orient:-) max_ev_support = 1 # spliced_intron 8951830-8951935 (orient:-) max_ev_support = 2 scaffold_13 - intron 8951830-8951935 asmbl_9960,asmbl_9962 scaffold_13 - retained_intron 8951830-8951935 asmbl_9961 // Retained and Spliced Intron # retained_intron 8952103-8952193 (orient:-) max_ev_support = 1 # spliced_intron 8952103-8952193 (orient:-) max_ev_support = 2 scaffold_13 - intron 8952103-8952193 asmbl_9960,asmbl_9962 scaffold_13 - retained_intron 8952103-8952193 asmbl_9961 // Exon Skipping and Retention # skipped_exon 9180594-9180908 (orient:-) max_ev_support = 2 # retained_exon 9180704-9180801 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 9180704-9180801 asmbl_9965 scaffold_13 - intron_skips_exon 9180594-9180908 asmbl_9964 // Exon Skipping and Retention # skipped_exon 9337018-9337432 (orient:-) max_ev_support = 1 # retained_exon 9337243-9337322 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 9337243-9337322 asmbl_9982,asmbl_9983,asmbl_9984 scaffold_13 - intron_skips_exon 9337018-9337432 asmbl_9985 // Retained and Spliced Intron # retained_intron 9535986-9536192 (orient:-) max_ev_support = 2 # spliced_intron 9535986-9536192 (orient:-) max_ev_support = 1 scaffold_13 - intron 9535986-9536192 asmbl_9994 scaffold_13 - retained_intron 9535986-9536192 asmbl_9991,asmbl_9993 // Retained and Spliced Intron # retained_intron 9535986-9536300 (orient:-) max_ev_support = 2 # spliced_intron 9535986-9536300 (orient:-) max_ev_support = 2 scaffold_13 - intron 9535986-9536300 asmbl_9990,asmbl_9992 scaffold_13 - retained_intron 9535986-9536300 asmbl_9991,asmbl_9993 // Exon Skipping and Retention # skipped_exon 9552494-9553613 (orient:-) max_ev_support = 2 # retained_exon 9553262-9553299 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 9553262-9553299 asmbl_9997 scaffold_13 - intron_skips_exon 9552494-9553613 asmbl_9996 // Retained and Spliced Intron # retained_intron 9896483-9896567 (orient:-) max_ev_support = 1 # spliced_intron 9896483-9896567 (orient:-) max_ev_support = 2 scaffold_13 - intron 9896483-9896567 asmbl_10004 scaffold_13 - retained_intron 9896483-9896567 asmbl_10005 // Retained and Spliced Intron # retained_intron 9997163-9997360 (orient:-) max_ev_support = 2 # spliced_intron 9997163-9997360 (orient:-) max_ev_support = 2 scaffold_13 - intron 9997163-9997360 asmbl_10008 scaffold_13 - retained_intron 9997163-9997360 asmbl_10009 // Retained and Spliced Intron # retained_intron 10226230-10226249 (orient:-) max_ev_support = 1 # spliced_intron 10226230-10226249 (orient:-) max_ev_support = 1 scaffold_13 - intron 10226230-10226249 asmbl_10014 scaffold_13 - retained_intron 10226230-10226249 asmbl_10015,asmbl_10016,asmbl_10017 // Exon Skipping and Retention # skipped_exon 11376844-11378131 (orient:-) max_ev_support = 3 # retained_exon 11377478-11377534 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 11377478-11377534 asmbl_10041,asmbl_10042,asmbl_10043,asmbl_10045,asmbl_10046,asmbl_10047,asmbl_10048,asmbl_10050,asmbl_10052,asmbl_10053 scaffold_13 - intron_skips_exon 11376844-11378131 asmbl_10044 // Exon Skipping and Retention # skipped_exon 11376844-11379297 (orient:-) max_ev_support = 1 # retained_exon 11377478-11378203 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 11377478-11377534,11378132-11378203 asmbl_10041,asmbl_10042 scaffold_13 - intron_skips_exon 11376844-11379297 asmbl_10054 // Exon Skipping and Retention # skipped_exon 11377535-11379297 (orient:-) max_ev_support = 3 # retained_exon 11378132-11378203 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 11378132-11378203 asmbl_10041,asmbl_10042,asmbl_10044 scaffold_13 - intron_skips_exon 11377535-11379297 asmbl_10043,asmbl_10045,asmbl_10047,asmbl_10048,asmbl_10050,asmbl_10052,asmbl_10053 // Exon Skipping and Retention # skipped_exon 11379478-11382289 (orient:-) max_ev_support = 2 # retained_exon 11381832-11381855 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 11381832-11381855 asmbl_10043,asmbl_10053,asmbl_10054 scaffold_13 - intron_skips_exon 11379478-11382289 asmbl_10042,asmbl_10050 // Exon Skipping and Retention # skipped_exon 11379416-11382289 (orient:-) max_ev_support = 3 # retained_exon 11381832-11381855 (orient:-) max_ev_support = 3 scaffold_13 - retained_exons 11381832-11381855 asmbl_10043,asmbl_10053,asmbl_10054 scaffold_13 - intron_skips_exon 11379416-11382289 asmbl_10045 // Retained and Spliced Intron # retained_intron 11379478-11379627 (orient:-) max_ev_support = 2 # spliced_intron 11379478-11379627 (orient:-) max_ev_support = 2 scaffold_13 - intron 11379478-11379627 asmbl_10041 scaffold_13 - retained_intron 11379478-11379627 asmbl_10044,asmbl_10047 // Exon Skipping and Retention # skipped_exon 11379416-11381831 (orient:-) max_ev_support = 3 # retained_exon 11380238-11380872 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11380238-11380872 asmbl_10052 scaffold_13 - intron_skips_exon 11379416-11381831 asmbl_10043 // Exon Skipping and Retention # skipped_exon 11379478-11381831 (orient:-) max_ev_support = 2 # retained_exon 11380238-11380872 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11380238-11380872 asmbl_10052 scaffold_13 - intron_skips_exon 11379478-11381831 asmbl_10053,asmbl_10054 // Exon Skipping and Retention # skipped_exon 11379416-11382289 (orient:-) max_ev_support = 3 # retained_exon 11380238-11381855 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11380238-11380872,11381832-11381855 asmbl_10052 scaffold_13 - intron_skips_exon 11379416-11382289 asmbl_10045 // Exon Skipping and Retention # skipped_exon 11379478-11382289 (orient:-) max_ev_support = 2 # retained_exon 11380238-11381855 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 11380238-11380872,11381832-11381855 asmbl_10052 scaffold_13 - intron_skips_exon 11379478-11382289 asmbl_10042,asmbl_10050 // Exon Skipping and Retention # skipped_exon 12460703-12461376 (orient:-) max_ev_support = 1 # retained_exon 12460893-12460942 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 12460893-12460942 asmbl_10102,asmbl_10103 scaffold_13 - intron_skips_exon 12460703-12461376 asmbl_10104 // Exon Skipping and Retention # skipped_exon 13692310-13694203 (orient:-) max_ev_support = 2 # retained_exon 13692944-13692988 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 13692944-13692988 asmbl_10120 scaffold_13 - intron_skips_exon 13692310-13694203 asmbl_10119 // Retained and Spliced Intron # retained_intron 14015268-14015390 (orient:-) max_ev_support = 1 # spliced_intron 14015268-14015390 (orient:-) max_ev_support = 2 scaffold_13 - intron 14015268-14015390 asmbl_10134 scaffold_13 - retained_intron 14015268-14015390 asmbl_10135 // Exon Skipping and Retention # skipped_exon 14561036-14563633 (orient:-) max_ev_support = 2 # retained_exon 14561660-14561718 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14561660-14561718 asmbl_10164 scaffold_13 - intron_skips_exon 14561036-14563633 asmbl_10163,asmbl_10166 // Exon Skipping and Retention # skipped_exon 14561036-14563619 (orient:-) max_ev_support = 1 # retained_exon 14561660-14561718 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14561660-14561718 asmbl_10164 scaffold_13 - intron_skips_exon 14561036-14563619 asmbl_10167,asmbl_10171 // Exon Skipping and Retention # skipped_exon 14561036-14563633 (orient:-) max_ev_support = 2 # retained_exon 14561660-14563480 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14561660-14561718,14563424-14563480 asmbl_10165 scaffold_13 - intron_skips_exon 14561036-14563633 asmbl_10163,asmbl_10166 // Exon Skipping and Retention # skipped_exon 14561036-14563619 (orient:-) max_ev_support = 1 # retained_exon 14561660-14563480 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14561660-14561718,14563424-14563480 asmbl_10165 scaffold_13 - intron_skips_exon 14561036-14563619 asmbl_10167,asmbl_10171 // Exon Skipping and Retention # skipped_exon 14561719-14563633 (orient:-) max_ev_support = 1 # retained_exon 14563424-14563480 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 14563424-14563480 asmbl_10165 scaffold_13 - intron_skips_exon 14561719-14563633 asmbl_10164 // Retained and Spliced Intron # retained_intron 14982062-14982116 (orient:-) max_ev_support = 1 # spliced_intron 14982062-14982116 (orient:-) max_ev_support = 1 scaffold_13 - intron 14982062-14982116 asmbl_10185 scaffold_13 - retained_intron 14982062-14982116 asmbl_10184 // Exon Skipping and Retention # skipped_exon 15037437-15039366 (orient:-) max_ev_support = 2 # retained_exon 15037855-15037979 (orient:-) max_ev_support = 2 scaffold_13 - retained_exons 15037855-15037979 asmbl_10188 scaffold_13 - intron_skips_exon 15037437-15039366 asmbl_10187 // Retained and Spliced Intron # retained_intron 15244277-15244789 (orient:-) max_ev_support = 1 # spliced_intron 15244277-15244789 (orient:-) max_ev_support = 3 scaffold_13 - intron 15244277-15244789 asmbl_10198 scaffold_13 - retained_intron 15244277-15244789 asmbl_10199 // Exon Skipping and Retention # skipped_exon 15732519-15733840 (orient:-) max_ev_support = 1 # retained_exon 15733278-15733376 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 15733278-15733376 asmbl_10220 scaffold_13 - intron_skips_exon 15732519-15733840 asmbl_10221 // Retained and Spliced Intron # retained_intron 16006876-16007020 (orient:-) max_ev_support = 2 # spliced_intron 16006876-16007020 (orient:-) max_ev_support = 1 scaffold_13 - intron 16006876-16007020 asmbl_10228 scaffold_13 - retained_intron 16006876-16007020 asmbl_10229 // Exon Skipping and Retention # skipped_exon 16150170-16152408 (orient:-) max_ev_support = 1 # retained_exon 16151466-16151528 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 16151466-16151528 asmbl_10239 scaffold_13 - intron_skips_exon 16150170-16152408 asmbl_10238 // Exon Skipping and Retention # skipped_exon 16150173-16152408 (orient:-) max_ev_support = 1 # retained_exon 16151466-16151528 (orient:-) max_ev_support = 1 scaffold_13 - retained_exons 16151466-16151528 asmbl_10239 scaffold_13 - intron_skips_exon 16150173-16152408 asmbl_10240 // Retained and Spliced Intron # retained_intron 16190374-16190412 (orient:-) max_ev_support = 2 # spliced_intron 16190374-16190412 (orient:-) max_ev_support = 1 scaffold_13 - intron 16190374-16190412 asmbl_10251 scaffold_13 - retained_intron 16190374-16190412 asmbl_10250 // Retained and Spliced Intron # retained_intron 16326282-16327028 (orient:-) max_ev_support = 2 # spliced_intron 16326282-16327028 (orient:-) max_ev_support = 2 scaffold_13 - intron 16326282-16327028 asmbl_10263 scaffold_13 - retained_intron 16326282-16327028 asmbl_10264,asmbl_10265 // Retained and Spliced Intron # retained_intron 16460477-16460808 (orient:-) max_ev_support = 2 # spliced_intron 16460477-16460808 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460477-16460808 asmbl_10273,asmbl_10274,asmbl_10276,asmbl_10277 scaffold_13 - retained_intron 16460477-16460808 asmbl_10275 // Retained and Spliced Intron # retained_intron 16460509-16460808 (orient:-) max_ev_support = 2 # spliced_intron 16460509-16460808 (orient:-) max_ev_support = 1 scaffold_13 - intron 16460509-16460808 asmbl_10278 scaffold_13 - retained_intron 16460509-16460808 asmbl_10275 // Retained and Spliced Intron # retained_intron 16460036-16460303 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460303 (orient:-) max_ev_support = 1 scaffold_13 - intron 16460036-16460303 asmbl_10278 scaffold_13 - retained_intron 16460036-16460303 asmbl_10277 // Retained and Spliced Intron # retained_intron 16460036-16460320 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460320 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460036-16460320 asmbl_10274,asmbl_10275 scaffold_13 - retained_intron 16460036-16460320 asmbl_10277 // Retained and Spliced Intron # retained_intron 16460036-16460350 (orient:-) max_ev_support = 2 # spliced_intron 16460036-16460350 (orient:-) max_ev_support = 3 scaffold_13 - intron 16460036-16460350 asmbl_10273 scaffold_13 - retained_intron 16460036-16460350 asmbl_10277 // Retained and Spliced Intron # retained_intron 16460089-16460350 (orient:-) max_ev_support = 2 # spliced_intron 16460089-16460350 (orient:-) max_ev_support = 2 scaffold_13 - intron 16460089-16460350 asmbl_10276 scaffold_13 - retained_intron 16460089-16460350 asmbl_10277 // Retained and Spliced Intron # retained_intron 4803-5026 (orient:+) max_ev_support = 3 # spliced_intron 4803-5026 (orient:+) max_ev_support = 3 scaffold_13 + intron 4803-5026 asmbl_10415 scaffold_13 + retained_intron 4803-5026 asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421,asmbl_10422,asmbl_10423 // Retained and Spliced Intron # retained_intron 4803-5031 (orient:+) max_ev_support = 3 # spliced_intron 4803-5031 (orient:+) max_ev_support = 2 scaffold_13 + intron 4803-5031 asmbl_10419 scaffold_13 + retained_intron 4803-5031 asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421,asmbl_10422,asmbl_10423 // Retained and Spliced Intron # retained_intron 5136-5411 (orient:+) max_ev_support = 3 # spliced_intron 5136-5411 (orient:+) max_ev_support = 3 scaffold_13 + intron 5136-5411 asmbl_10415,asmbl_10422,asmbl_10423 scaffold_13 + retained_intron 5136-5411 asmbl_10416,asmbl_10418,asmbl_10420,asmbl_10421 // Retained and Spliced Intron # retained_intron 4351-4448 (orient:+) max_ev_support = 2 # spliced_intron 4351-4448 (orient:+) max_ev_support = 3 scaffold_13 + intron 4351-4448 asmbl_10415,asmbl_10416,asmbl_10421,asmbl_10422 scaffold_13 + retained_intron 4351-4448 asmbl_10420,asmbl_10423 // Retained and Spliced Intron # retained_intron 87817-88104 (orient:+) max_ev_support = 3 # spliced_intron 87817-88104 (orient:+) max_ev_support = 2 scaffold_13 + intron 87817-88104 asmbl_10428 scaffold_13 + retained_intron 87817-88104 asmbl_10426,asmbl_10427 // Retained and Spliced Intron # retained_intron 87947-88104 (orient:+) max_ev_support = 3 # spliced_intron 87947-88104 (orient:+) max_ev_support = 2 scaffold_13 + intron 87947-88104 asmbl_10429 scaffold_13 + retained_intron 87947-88104 asmbl_10426,asmbl_10427 // Retained and Spliced Intron # retained_intron 220491-221239 (orient:+) max_ev_support = 1 # spliced_intron 220491-221239 (orient:+) max_ev_support = 2 scaffold_13 + intron 220491-221239 asmbl_10431 scaffold_13 + retained_intron 220491-221239 asmbl_10433,asmbl_10434 // Retained and Spliced Intron # retained_intron 222006-222122 (orient:+) max_ev_support = 1 # spliced_intron 222006-222122 (orient:+) max_ev_support = 2 scaffold_13 + intron 222006-222122 asmbl_10431,asmbl_10434 scaffold_13 + retained_intron 222006-222122 asmbl_10433 // Retained and Spliced Intron # retained_intron 221295-221368 (orient:+) max_ev_support = 1 # spliced_intron 221295-221368 (orient:+) max_ev_support = 2 scaffold_13 + intron 221295-221368 asmbl_10431,asmbl_10433 scaffold_13 + retained_intron 221295-221368 asmbl_10434 // Retained and Spliced Intron # retained_intron 272420-275404 (orient:+) max_ev_support = 2 # spliced_intron 272420-275404 (orient:+) max_ev_support = 1 scaffold_13 + intron 272420-275404 asmbl_10439 scaffold_13 + retained_intron 272420-275404 asmbl_10436 // Retained and Spliced Intron # retained_intron 272653-275404 (orient:+) max_ev_support = 2 # spliced_intron 272653-275404 (orient:+) max_ev_support = 1 scaffold_13 + intron 272653-275404 asmbl_10438 scaffold_13 + retained_intron 272653-275404 asmbl_10436 // Retained and Spliced Intron # retained_intron 274732-275404 (orient:+) max_ev_support = 2 # spliced_intron 274732-275404 (orient:+) max_ev_support = 2 scaffold_13 + intron 274732-275404 asmbl_10435 scaffold_13 + retained_intron 274732-275404 asmbl_10436 // Retained and Spliced Intron # retained_intron 278905-279237 (orient:+) max_ev_support = 2 # spliced_intron 278905-279237 (orient:+) max_ev_support = 3 scaffold_13 + intron 278905-279237 asmbl_10435,asmbl_10436,asmbl_10438,asmbl_10439,asmbl_10443 scaffold_13 + retained_intron 278905-279237 asmbl_10440 // Exon Skipping and Retention # skipped_exon 517905-520155 (orient:+) max_ev_support = 3 # retained_exon 519725-519848 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 519725-519848 asmbl_10453 scaffold_13 + intron_skips_exon 517905-520155 asmbl_10454 // Exon Skipping and Retention # skipped_exon 521688-522226 (orient:+) max_ev_support = 2 # retained_exon 521956-522039 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 521956-522039 asmbl_10454,asmbl_10456,asmbl_10457,asmbl_10458,asmbl_10459,asmbl_10460,asmbl_10461 scaffold_13 + intron_skips_exon 521688-522226 asmbl_10453 // Retained and Spliced Intron # retained_intron 517905-518333 (orient:+) max_ev_support = 2 # spliced_intron 517905-518333 (orient:+) max_ev_support = 1 scaffold_13 + intron 517905-518333 asmbl_10458,asmbl_10460 scaffold_13 + retained_intron 517905-518333 asmbl_10457 // Retained and Spliced Intron # retained_intron 517905-518487 (orient:+) max_ev_support = 2 # spliced_intron 517905-518487 (orient:+) max_ev_support = 2 scaffold_13 + intron 517905-518487 asmbl_10456,asmbl_10461 scaffold_13 + retained_intron 517905-518487 asmbl_10457 // Retained and Spliced Intron # retained_intron 517905-519724 (orient:+) max_ev_support = 2 # spliced_intron 517905-519724 (orient:+) max_ev_support = 2 scaffold_13 + intron 517905-519724 asmbl_10453 scaffold_13 + retained_intron 517905-519724 asmbl_10457 // Retained and Spliced Intron # retained_intron 517905-520155 (orient:+) max_ev_support = 2 # spliced_intron 517905-520155 (orient:+) max_ev_support = 3 scaffold_13 + intron 517905-520155 asmbl_10454 scaffold_13 + retained_intron 517905-520155 asmbl_10457 // Retained and Spliced Intron # retained_intron 518381-518487 (orient:+) max_ev_support = 2 # spliced_intron 518381-518487 (orient:+) max_ev_support = 1 scaffold_13 + intron 518381-518487 asmbl_10458,asmbl_10460 scaffold_13 + retained_intron 518381-518487 asmbl_10457,asmbl_10459 // Retained and Spliced Intron # retained_intron 519849-520155 (orient:+) max_ev_support = 2 # spliced_intron 519849-520155 (orient:+) max_ev_support = 2 scaffold_13 + intron 519849-520155 asmbl_10453,asmbl_10456,asmbl_10458 scaffold_13 + retained_intron 519849-520155 asmbl_10457,asmbl_10459,asmbl_10460,asmbl_10461 // Exon Skipping and Retention # skipped_exon 517905-519724 (orient:+) max_ev_support = 2 # retained_exon 518334-518380 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 518334-518380 asmbl_10458,asmbl_10460 scaffold_13 + intron_skips_exon 517905-519724 asmbl_10453 // Exon Skipping and Retention # skipped_exon 517905-518487 (orient:+) max_ev_support = 2 # retained_exon 518334-518380 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 518334-518380 asmbl_10458,asmbl_10460 scaffold_13 + intron_skips_exon 517905-518487 asmbl_10456,asmbl_10461 // Retained and Spliced Intron # retained_intron 738856-739000 (orient:+) max_ev_support = 2 # spliced_intron 738856-739000 (orient:+) max_ev_support = 1 scaffold_13 + intron 738856-739000 asmbl_10485 scaffold_13 + retained_intron 738856-739000 asmbl_10483 // Retained and Spliced Intron # retained_intron 738856-739027 (orient:+) max_ev_support = 2 # spliced_intron 738856-739027 (orient:+) max_ev_support = 2 scaffold_13 + intron 738856-739027 asmbl_10482 scaffold_13 + retained_intron 738856-739027 asmbl_10483 // Retained and Spliced Intron # retained_intron 1013360-1013456 (orient:+) max_ev_support = 3 # spliced_intron 1013360-1013456 (orient:+) max_ev_support = 1 scaffold_13 + intron 1013360-1013456 asmbl_10489 scaffold_13 + retained_intron 1013360-1013456 asmbl_10488 // Retained and Spliced Intron # retained_intron 1229434-1229825 (orient:+) max_ev_support = 5 # spliced_intron 1229434-1229825 (orient:+) max_ev_support = 1 scaffold_13 + intron 1229434-1229825 asmbl_10518 scaffold_13 + retained_intron 1229434-1229825 asmbl_10514,asmbl_10519 // Retained and Spliced Intron # retained_intron 1230177-1230306 (orient:+) max_ev_support = 3 # spliced_intron 1230177-1230306 (orient:+) max_ev_support = 1 scaffold_13 + intron 1230177-1230306 asmbl_10519 scaffold_13 + retained_intron 1230177-1230306 asmbl_10514,asmbl_10518,asmbl_10522 // Retained and Spliced Intron # retained_intron 1238835-1239623 (orient:+) max_ev_support = 6 # spliced_intron 1238835-1239623 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238835-1239623 asmbl_10514,asmbl_10517,asmbl_10518,asmbl_10520,asmbl_10521,asmbl_10524,asmbl_10525,asmbl_10526 scaffold_13 + retained_intron 1238835-1239623 asmbl_10515,asmbl_10516 // Retained and Spliced Intron # retained_intron 1238200-1238338 (orient:+) max_ev_support = 1 # spliced_intron 1238200-1238338 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238200-1238338 asmbl_10514,asmbl_10515,asmbl_10517,asmbl_10518,asmbl_10520,asmbl_10521,asmbl_10526 scaffold_13 + retained_intron 1238200-1238338 asmbl_10524,asmbl_10525 // Retained and Spliced Intron # retained_intron 1238377-1238489 (orient:+) max_ev_support = 1 # spliced_intron 1238377-1238489 (orient:+) max_ev_support = 1 scaffold_13 + intron 1238377-1238489 asmbl_10520 scaffold_13 + retained_intron 1238377-1238489 asmbl_10524 // Retained and Spliced Intron # retained_intron 1238377-1238503 (orient:+) max_ev_support = 1 # spliced_intron 1238377-1238503 (orient:+) max_ev_support = 3 scaffold_13 + intron 1238377-1238503 asmbl_10514,asmbl_10515,asmbl_10517,asmbl_10518,asmbl_10521,asmbl_10525,asmbl_10526 scaffold_13 + retained_intron 1238377-1238503 asmbl_10524 // Retained and Spliced Intron # retained_intron 1532474-1532709 (orient:+) max_ev_support = 2 # spliced_intron 1532474-1532709 (orient:+) max_ev_support = 3 scaffold_13 + intron 1532474-1532709 asmbl_10535 scaffold_13 + retained_intron 1532474-1532709 asmbl_10536 // Retained and Spliced Intron # retained_intron 2295238-2295321 (orient:+) max_ev_support = 1 # spliced_intron 2295238-2295321 (orient:+) max_ev_support = 2 scaffold_13 + intron 2295238-2295321 asmbl_10556,asmbl_10558 scaffold_13 + retained_intron 2295238-2295321 asmbl_10561 // Retained and Spliced Intron # retained_intron 2334729-2334832 (orient:+) max_ev_support = 3 # spliced_intron 2334729-2334832 (orient:+) max_ev_support = 2 scaffold_13 + intron 2334729-2334832 asmbl_10571,asmbl_10589,asmbl_10591 scaffold_13 + retained_intron 2334729-2334832 asmbl_10564 // Retained and Spliced Intron # retained_intron 2334729-2334862 (orient:+) max_ev_support = 3 # spliced_intron 2334729-2334862 (orient:+) max_ev_support = 2 scaffold_13 + intron 2334729-2334862 asmbl_10569 scaffold_13 + retained_intron 2334729-2334862 asmbl_10564 // Retained and Spliced Intron # retained_intron 2359851-2360242 (orient:+) max_ev_support = 2 # spliced_intron 2359851-2360242 (orient:+) max_ev_support = 1 scaffold_13 + intron 2359851-2360242 asmbl_10563,asmbl_10575,asmbl_10576,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10590,asmbl_10591 scaffold_13 + retained_intron 2359851-2360242 asmbl_10566 // Exon Skipping and Retention # skipped_exon 2338672-2340365 (orient:+) max_ev_support = 1 # retained_exon 2339179-2340134 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 2339179-2339457,2339877-2340134 asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10582,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591 scaffold_13 + intron_skips_exon 2338672-2340365 asmbl_10577,asmbl_10578 // Retained and Spliced Intron # retained_intron 2340633-2340911 (orient:+) max_ev_support = 2 # spliced_intron 2340633-2340911 (orient:+) max_ev_support = 1 scaffold_13 + intron 2340633-2340911 asmbl_10591 scaffold_13 + retained_intron 2340633-2340911 asmbl_10574,asmbl_10577,asmbl_10586 // Retained and Spliced Intron # retained_intron 2340633-2341002 (orient:+) max_ev_support = 2 # spliced_intron 2340633-2341002 (orient:+) max_ev_support = 1 scaffold_13 + intron 2340633-2341002 asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590 scaffold_13 + retained_intron 2340633-2341002 asmbl_10574,asmbl_10577,asmbl_10586 // Retained and Spliced Intron # retained_intron 2338672-2339178 (orient:+) max_ev_support = 1 # spliced_intron 2338672-2339178 (orient:+) max_ev_support = 2 scaffold_13 + intron 2338672-2339178 asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10582,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591 scaffold_13 + retained_intron 2338672-2339178 asmbl_10575,asmbl_10580,asmbl_10581,asmbl_10583,asmbl_10586 // Retained and Spliced Intron # retained_intron 2338672-2340365 (orient:+) max_ev_support = 1 # spliced_intron 2338672-2340365 (orient:+) max_ev_support = 1 scaffold_13 + intron 2338672-2340365 asmbl_10577,asmbl_10578 scaffold_13 + retained_intron 2338672-2340365 asmbl_10575,asmbl_10580 // Retained and Spliced Intron # retained_intron 2339458-2339876 (orient:+) max_ev_support = 1 # spliced_intron 2339458-2339876 (orient:+) max_ev_support = 2 scaffold_13 + intron 2339458-2339876 asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10585,asmbl_10586,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591 scaffold_13 + retained_intron 2339458-2339876 asmbl_10575,asmbl_10580,asmbl_10584 // Retained and Spliced Intron # retained_intron 2340135-2340365 (orient:+) max_ev_support = 1 # spliced_intron 2340135-2340365 (orient:+) max_ev_support = 2 scaffold_13 + intron 2340135-2340365 asmbl_10574,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10585,asmbl_10586,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591 scaffold_13 + retained_intron 2340135-2340365 asmbl_10575,asmbl_10580,asmbl_10584 // Exon Skipping and Retention # skipped_exon 2340952-2343859 (orient:+) max_ev_support = 1 # retained_exon 2341003-2341275 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2341003-2341275 asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590 scaffold_13 + intron_skips_exon 2340952-2343859 asmbl_10591 // Exon Skipping and Retention # skipped_exon 2352642-2354606 (orient:+) max_ev_support = 1 # retained_exon 2353532-2353588 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2353532-2353588 asmbl_10580,asmbl_10583 scaffold_13 + intron_skips_exon 2352642-2354606 asmbl_10575,asmbl_10576,asmbl_10579,asmbl_10581,asmbl_10582,asmbl_10584,asmbl_10585,asmbl_10591 // Exon Skipping and Retention # skipped_exon 2352642-2354609 (orient:+) max_ev_support = 1 # retained_exon 2353532-2353588 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2353532-2353588 asmbl_10580,asmbl_10583 scaffold_13 + intron_skips_exon 2352642-2354609 asmbl_10588,asmbl_10590 // Exon Skipping and Retention # skipped_exon 2333469-2335810 (orient:+) max_ev_support = 1 # retained_exon 2334117-2334931 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2334117-2334728,2334833-2334931 asmbl_10589,asmbl_10591 scaffold_13 + intron_skips_exon 2333469-2335810 asmbl_10576,asmbl_10588,asmbl_10590 // Exon Skipping and Retention # skipped_exon 2340633-2341002 (orient:+) max_ev_support = 1 # retained_exon 2340912-2340951 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 2340912-2340951 asmbl_10591 scaffold_13 + intron_skips_exon 2340633-2341002 asmbl_10575,asmbl_10576,asmbl_10578,asmbl_10579,asmbl_10580,asmbl_10581,asmbl_10582,asmbl_10583,asmbl_10584,asmbl_10585,asmbl_10588,asmbl_10589,asmbl_10590 // Retained and Spliced Intron # retained_intron 2321236-2321329 (orient:+) max_ev_support = 1 # spliced_intron 2321236-2321329 (orient:+) max_ev_support = 2 scaffold_13 + intron 2321236-2321329 asmbl_10564,asmbl_10569,asmbl_10571,asmbl_10573,asmbl_10576,asmbl_10588,asmbl_10589,asmbl_10590,asmbl_10591,asmbl_10592 scaffold_13 + retained_intron 2321236-2321329 asmbl_10593 // Retained and Spliced Intron # retained_intron 2506963-2507489 (orient:+) max_ev_support = 3 # spliced_intron 2506963-2507489 (orient:+) max_ev_support = 2 scaffold_13 + intron 2506963-2507489 asmbl_10604,asmbl_10606 scaffold_13 + retained_intron 2506963-2507489 asmbl_10602,asmbl_10605 // Retained and Spliced Intron # retained_intron 2507240-2507489 (orient:+) max_ev_support = 3 # spliced_intron 2507240-2507489 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507240-2507489 asmbl_10603 scaffold_13 + retained_intron 2507240-2507489 asmbl_10602,asmbl_10605 // Retained and Spliced Intron # retained_intron 2507878-2508092 (orient:+) max_ev_support = 2 # spliced_intron 2507878-2508092 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507878-2508092 asmbl_10602,asmbl_10603,asmbl_10606 scaffold_13 + retained_intron 2507878-2508092 asmbl_10604,asmbl_10605 // Retained and Spliced Intron # retained_intron 2507577-2507742 (orient:+) max_ev_support = 2 # spliced_intron 2507577-2507742 (orient:+) max_ev_support = 3 scaffold_13 + intron 2507577-2507742 asmbl_10602,asmbl_10603,asmbl_10604,asmbl_10606 scaffold_13 + retained_intron 2507577-2507742 asmbl_10605 // Retained and Spliced Intron # retained_intron 2569792-2570318 (orient:+) max_ev_support = 4 # spliced_intron 2569792-2570318 (orient:+) max_ev_support = 3 scaffold_13 + intron 2569792-2570318 asmbl_10609,asmbl_10610,asmbl_10611,asmbl_10612,asmbl_10613,asmbl_10614 scaffold_13 + retained_intron 2569792-2570318 asmbl_10607,asmbl_10608 // Retained and Spliced Intron # retained_intron 2570469-2570603 (orient:+) max_ev_support = 2 # spliced_intron 2570469-2570603 (orient:+) max_ev_support = 3 scaffold_13 + intron 2570469-2570603 asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10614 scaffold_13 + retained_intron 2570469-2570603 asmbl_10607,asmbl_10608,asmbl_10611,asmbl_10613 // Retained and Spliced Intron # retained_intron 2570778-2570949 (orient:+) max_ev_support = 2 # spliced_intron 2570778-2570949 (orient:+) max_ev_support = 3 scaffold_13 + intron 2570778-2570949 asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10614 scaffold_13 + retained_intron 2570778-2570949 asmbl_10607,asmbl_10608,asmbl_10611,asmbl_10613 // Retained and Spliced Intron # retained_intron 2571028-2571173 (orient:+) max_ev_support = 2 # spliced_intron 2571028-2571173 (orient:+) max_ev_support = 3 scaffold_13 + intron 2571028-2571173 asmbl_10608,asmbl_10609,asmbl_10610,asmbl_10612,asmbl_10613,asmbl_10614 scaffold_13 + retained_intron 2571028-2571173 asmbl_10607,asmbl_10611 // Retained and Spliced Intron # retained_intron 2571207-2571311 (orient:+) max_ev_support = 2 # spliced_intron 2571207-2571311 (orient:+) max_ev_support = 3 scaffold_13 + intron 2571207-2571311 asmbl_10609,asmbl_10612 scaffold_13 + retained_intron 2571207-2571311 asmbl_10607,asmbl_10608,asmbl_10610,asmbl_10611,asmbl_10613,asmbl_10614 // Retained and Spliced Intron # retained_intron 2568046-2569763 (orient:+) max_ev_support = 1 # spliced_intron 2568046-2569763 (orient:+) max_ev_support = 3 scaffold_13 + intron 2568046-2569763 asmbl_10609,asmbl_10610 scaffold_13 + retained_intron 2568046-2569763 asmbl_10611,asmbl_10612,asmbl_10613,asmbl_10614 // Retained and Spliced Intron # retained_intron 2636936-2637161 (orient:+) max_ev_support = 2 # spliced_intron 2636936-2637161 (orient:+) max_ev_support = 4 scaffold_13 + intron 2636936-2637161 asmbl_10615 scaffold_13 + retained_intron 2636936-2637161 asmbl_10616 // Retained and Spliced Intron # retained_intron 2637243-2637508 (orient:+) max_ev_support = 2 # spliced_intron 2637243-2637508 (orient:+) max_ev_support = 4 scaffold_13 + intron 2637243-2637508 asmbl_10615 scaffold_13 + retained_intron 2637243-2637508 asmbl_10616 // Exon Skipping and Retention # skipped_exon 2969960-2972943 (orient:+) max_ev_support = 2 # retained_exon 2972401-2972535 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 2972401-2972535 asmbl_10629 scaffold_13 + intron_skips_exon 2969960-2972943 asmbl_10628 // Retained and Spliced Intron # retained_intron 3264232-3264348 (orient:+) max_ev_support = 1 # spliced_intron 3264232-3264348 (orient:+) max_ev_support = 2 scaffold_13 + intron 3264232-3264348 asmbl_10658 scaffold_13 + retained_intron 3264232-3264348 asmbl_10659,asmbl_10660 // Retained and Spliced Intron # retained_intron 3264401-3264477 (orient:+) max_ev_support = 1 # spliced_intron 3264401-3264477 (orient:+) max_ev_support = 2 scaffold_13 + intron 3264401-3264477 asmbl_10658,asmbl_10660 scaffold_13 + retained_intron 3264401-3264477 asmbl_10659 // Retained and Spliced Intron # retained_intron 3371276-3371709 (orient:+) max_ev_support = 2 # spliced_intron 3371276-3371709 (orient:+) max_ev_support = 2 scaffold_13 + intron 3371276-3371709 asmbl_10669 scaffold_13 + retained_intron 3371276-3371709 asmbl_10670 // Retained and Spliced Intron # retained_intron 3430642-3430833 (orient:+) max_ev_support = 2 # spliced_intron 3430642-3430833 (orient:+) max_ev_support = 1 scaffold_13 + intron 3430642-3430833 asmbl_10675 scaffold_13 + retained_intron 3430642-3430833 asmbl_10673,asmbl_10674 // Retained and Spliced Intron # retained_intron 3430216-3430310 (orient:+) max_ev_support = 2 # spliced_intron 3430216-3430310 (orient:+) max_ev_support = 2 scaffold_13 + intron 3430216-3430310 asmbl_10673,asmbl_10675 scaffold_13 + retained_intron 3430216-3430310 asmbl_10674 // Retained and Spliced Intron # retained_intron 3529047-3529149 (orient:+) max_ev_support = 1 # spliced_intron 3529047-3529149 (orient:+) max_ev_support = 2 scaffold_13 + intron 3529047-3529149 asmbl_10684,asmbl_10685,asmbl_10687 scaffold_13 + retained_intron 3529047-3529149 asmbl_10686 // Retained and Spliced Intron # retained_intron 3530974-3531292 (orient:+) max_ev_support = 1 # spliced_intron 3530974-3531292 (orient:+) max_ev_support = 2 scaffold_13 + intron 3530974-3531292 asmbl_10684,asmbl_10685,asmbl_10686,asmbl_10688 scaffold_13 + retained_intron 3530974-3531292 asmbl_10687 // Retained and Spliced Intron # retained_intron 3529936-3530025 (orient:+) max_ev_support = 1 # spliced_intron 3529936-3530025 (orient:+) max_ev_support = 2 scaffold_13 + intron 3529936-3530025 asmbl_10684,asmbl_10685,asmbl_10686,asmbl_10687 scaffold_13 + retained_intron 3529936-3530025 asmbl_10688 // Retained and Spliced Intron # retained_intron 3570908-3571205 (orient:+) max_ev_support = 3 # spliced_intron 3570908-3571205 (orient:+) max_ev_support = 2 scaffold_13 + intron 3570908-3571205 asmbl_10694,asmbl_10695 scaffold_13 + retained_intron 3570908-3571205 asmbl_10692,asmbl_10693 // Retained and Spliced Intron # retained_intron 3568630-3568756 (orient:+) max_ev_support = 1 # spliced_intron 3568630-3568756 (orient:+) max_ev_support = 2 scaffold_13 + intron 3568630-3568756 asmbl_10694 scaffold_13 + retained_intron 3568630-3568756 asmbl_10693 // Retained and Spliced Intron # retained_intron 3735623-3735769 (orient:+) max_ev_support = 2 # spliced_intron 3735623-3735769 (orient:+) max_ev_support = 3 scaffold_13 + intron 3735623-3735769 asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717 scaffold_13 + retained_intron 3735623-3735769 asmbl_10710 // Retained and Spliced Intron # retained_intron 3734461-3734554 (orient:+) max_ev_support = 3 # spliced_intron 3734461-3734554 (orient:+) max_ev_support = 2 scaffold_13 + intron 3734461-3734554 asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717 scaffold_13 + retained_intron 3734461-3734554 asmbl_10712 // Retained and Spliced Intron # retained_intron 3734461-3734631 (orient:+) max_ev_support = 3 # spliced_intron 3734461-3734631 (orient:+) max_ev_support = 2 scaffold_13 + intron 3734461-3734631 asmbl_10710,asmbl_10711 scaffold_13 + retained_intron 3734461-3734631 asmbl_10712 // Retained and Spliced Intron # retained_intron 3736104-3736197 (orient:+) max_ev_support = 2 # spliced_intron 3736104-3736197 (orient:+) max_ev_support = 3 scaffold_13 + intron 3736104-3736197 asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717,asmbl_10718 scaffold_13 + retained_intron 3736104-3736197 asmbl_10715 // Retained and Spliced Intron # retained_intron 3733773-3733964 (orient:+) max_ev_support = 1 # spliced_intron 3733773-3733964 (orient:+) max_ev_support = 2 scaffold_13 + intron 3733773-3733964 asmbl_10714 scaffold_13 + retained_intron 3733773-3733964 asmbl_10716,asmbl_10717 // Retained and Spliced Intron # retained_intron 3733822-3733964 (orient:+) max_ev_support = 1 # spliced_intron 3733822-3733964 (orient:+) max_ev_support = 2 scaffold_13 + intron 3733822-3733964 asmbl_10710,asmbl_10711,asmbl_10713 scaffold_13 + retained_intron 3733822-3733964 asmbl_10716,asmbl_10717 // Retained and Spliced Intron # retained_intron 3734866-3734962 (orient:+) max_ev_support = 1 # spliced_intron 3734866-3734962 (orient:+) max_ev_support = 3 scaffold_13 + intron 3734866-3734962 asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10717 scaffold_13 + retained_intron 3734866-3734962 asmbl_10716 // Retained and Spliced Intron # retained_intron 3735854-3736052 (orient:+) max_ev_support = 1 # spliced_intron 3735854-3736052 (orient:+) max_ev_support = 3 scaffold_13 + intron 3735854-3736052 asmbl_10710,asmbl_10711,asmbl_10712,asmbl_10713,asmbl_10714,asmbl_10716,asmbl_10717 scaffold_13 + retained_intron 3735854-3736052 asmbl_10718 // Retained and Spliced Intron # retained_intron 3747652-3747803 (orient:+) max_ev_support = 2 # spliced_intron 3747652-3747803 (orient:+) max_ev_support = 2 scaffold_13 + intron 3747652-3747803 asmbl_10721,asmbl_10723,asmbl_10724 scaffold_13 + retained_intron 3747652-3747803 asmbl_10722 // Retained and Spliced Intron # retained_intron 4077097-4077213 (orient:+) max_ev_support = 3 # spliced_intron 4077097-4077213 (orient:+) max_ev_support = 2 scaffold_13 + intron 4077097-4077213 asmbl_10736 scaffold_13 + retained_intron 4077097-4077213 asmbl_10735,asmbl_10737 // Retained and Spliced Intron # retained_intron 4078795-4078887 (orient:+) max_ev_support = 2 # spliced_intron 4078795-4078887 (orient:+) max_ev_support = 2 scaffold_13 + intron 4078795-4078887 asmbl_10739,asmbl_10741 scaffold_13 + retained_intron 4078795-4078887 asmbl_10740 // Retained and Spliced Intron # retained_intron 4254874-4255488 (orient:+) max_ev_support = 2 # spliced_intron 4254874-4255488 (orient:+) max_ev_support = 2 scaffold_13 + intron 4254874-4255488 asmbl_10750 scaffold_13 + retained_intron 4254874-4255488 asmbl_10749 // Retained and Spliced Intron # retained_intron 4378784-4378885 (orient:+) max_ev_support = 2 # spliced_intron 4378784-4378885 (orient:+) max_ev_support = 1 scaffold_13 + intron 4378784-4378885 asmbl_10766,asmbl_10767,asmbl_10768,asmbl_10770 scaffold_13 + retained_intron 4378784-4378885 asmbl_10765 // Retained and Spliced Intron # retained_intron 4457825-4458511 (orient:+) max_ev_support = 4 # spliced_intron 4457825-4458511 (orient:+) max_ev_support = 2 scaffold_13 + intron 4457825-4458511 asmbl_10774,asmbl_10775 scaffold_13 + retained_intron 4457825-4458511 asmbl_10773 // Retained and Spliced Intron # retained_intron 4457825-4458799 (orient:+) max_ev_support = 4 # spliced_intron 4457825-4458799 (orient:+) max_ev_support = 2 scaffold_13 + intron 4457825-4458799 asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780,asmbl_10781 scaffold_13 + retained_intron 4457825-4458799 asmbl_10773 // Retained and Spliced Intron # retained_intron 4458561-4458799 (orient:+) max_ev_support = 2 # spliced_intron 4458561-4458799 (orient:+) max_ev_support = 2 scaffold_13 + intron 4458561-4458799 asmbl_10774,asmbl_10775 scaffold_13 + retained_intron 4458561-4458799 asmbl_10773 // Exon Skipping and Retention # skipped_exon 4457825-4458799 (orient:+) max_ev_support = 2 # retained_exon 4458512-4458560 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 4458512-4458560 asmbl_10774,asmbl_10775 scaffold_13 + intron_skips_exon 4457825-4458799 asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780,asmbl_10781 // Retained and Spliced Intron # retained_intron 4459323-4459424 (orient:+) max_ev_support = 2 # spliced_intron 4459323-4459424 (orient:+) max_ev_support = 2 scaffold_13 + intron 4459323-4459424 asmbl_10773,asmbl_10775,asmbl_10778,asmbl_10779 scaffold_13 + retained_intron 4459323-4459424 asmbl_10774,asmbl_10776,asmbl_10780,asmbl_10781 // Retained and Spliced Intron # retained_intron 4458969-4459061 (orient:+) max_ev_support = 2 # spliced_intron 4458969-4459061 (orient:+) max_ev_support = 2 scaffold_13 + intron 4458969-4459061 asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10778,asmbl_10780 scaffold_13 + retained_intron 4458969-4459061 asmbl_10776,asmbl_10779,asmbl_10781 // Retained and Spliced Intron # retained_intron 4459134-4459215 (orient:+) max_ev_support = 2 # spliced_intron 4459134-4459215 (orient:+) max_ev_support = 2 scaffold_13 + intron 4459134-4459215 asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10778 scaffold_13 + retained_intron 4459134-4459215 asmbl_10776,asmbl_10779,asmbl_10780,asmbl_10781 // Retained and Spliced Intron # retained_intron 4457659-4457733 (orient:+) max_ev_support = 2 # spliced_intron 4457659-4457733 (orient:+) max_ev_support = 3 scaffold_13 + intron 4457659-4457733 asmbl_10773,asmbl_10774,asmbl_10775,asmbl_10776,asmbl_10778,asmbl_10779,asmbl_10780 scaffold_13 + retained_intron 4457659-4457733 asmbl_10777,asmbl_10781 // Retained and Spliced Intron # retained_intron 4532541-4532619 (orient:+) max_ev_support = 3 # spliced_intron 4532541-4532619 (orient:+) max_ev_support = 3 scaffold_13 + intron 4532541-4532619 asmbl_10792 scaffold_13 + retained_intron 4532541-4532619 asmbl_10791 // Retained and Spliced Intron # retained_intron 4656102-4656354 (orient:+) max_ev_support = 1 # spliced_intron 4656102-4656354 (orient:+) max_ev_support = 2 scaffold_13 + intron 4656102-4656354 asmbl_10800,asmbl_10802 scaffold_13 + retained_intron 4656102-4656354 asmbl_10801,asmbl_10803 // Retained and Spliced Intron # retained_intron 5208212-5208649 (orient:+) max_ev_support = 3 # spliced_intron 5208212-5208649 (orient:+) max_ev_support = 3 scaffold_13 + intron 5208212-5208649 asmbl_10811 scaffold_13 + retained_intron 5208212-5208649 asmbl_10812 // Retained and Spliced Intron # retained_intron 5208212-5208652 (orient:+) max_ev_support = 3 # spliced_intron 5208212-5208652 (orient:+) max_ev_support = 1 scaffold_13 + intron 5208212-5208652 asmbl_10813 scaffold_13 + retained_intron 5208212-5208652 asmbl_10812 // Exon Skipping and Retention # skipped_exon 5334067-5336246 (orient:+) max_ev_support = 1 # retained_exon 5335012-5335101 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 5335012-5335101 asmbl_10818,asmbl_10820 scaffold_13 + intron_skips_exon 5334067-5336246 asmbl_10821,asmbl_10822 // Exon Skipping and Retention # skipped_exon 5389961-5391342 (orient:+) max_ev_support = 2 # retained_exon 5390824-5390840 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 5390824-5390840 asmbl_10829 scaffold_13 + intron_skips_exon 5389961-5391342 asmbl_10826 // Retained and Spliced Intron # retained_intron 5459898-5460075 (orient:+) max_ev_support = 1 # spliced_intron 5459898-5460075 (orient:+) max_ev_support = 2 scaffold_13 + intron 5459898-5460075 asmbl_10830,asmbl_10831 scaffold_13 + retained_intron 5459898-5460075 asmbl_10833,asmbl_10834 // Retained and Spliced Intron # retained_intron 5506761-5506941 (orient:+) max_ev_support = 3 # spliced_intron 5506761-5506941 (orient:+) max_ev_support = 3 scaffold_13 + intron 5506761-5506941 asmbl_10838 scaffold_13 + retained_intron 5506761-5506941 asmbl_10840,asmbl_10841 // Retained and Spliced Intron # retained_intron 5506444-5506736 (orient:+) max_ev_support = 3 # spliced_intron 5506444-5506736 (orient:+) max_ev_support = 3 scaffold_13 + intron 5506444-5506736 asmbl_10838,asmbl_10839,asmbl_10840 scaffold_13 + retained_intron 5506444-5506736 asmbl_10841 // Exon Skipping and Retention # skipped_exon 5804903-5806487 (orient:+) max_ev_support = 1 # retained_exon 5805415-5805510 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 5805415-5805510 asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10886 scaffold_13 + intron_skips_exon 5804903-5806487 asmbl_10882 // Exon Skipping and Retention # skipped_exon 5812558-5814216 (orient:+) max_ev_support = 1 # retained_exon 5813476-5813553 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 5813476-5813553 asmbl_10880 scaffold_13 + intron_skips_exon 5812558-5814216 asmbl_10881,asmbl_10882 // Retained and Spliced Intron # retained_intron 5822786-5823442 (orient:+) max_ev_support = 1 # spliced_intron 5822786-5823442 (orient:+) max_ev_support = 2 scaffold_13 + intron 5822786-5823442 asmbl_10880,asmbl_10882,asmbl_10884 scaffold_13 + retained_intron 5822786-5823442 asmbl_10881 // Retained and Spliced Intron # retained_intron 5804903-5805414 (orient:+) max_ev_support = 1 # spliced_intron 5804903-5805414 (orient:+) max_ev_support = 2 scaffold_13 + intron 5804903-5805414 asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10886 scaffold_13 + retained_intron 5804903-5805414 asmbl_10885 // Retained and Spliced Intron # retained_intron 5802919-5803440 (orient:+) max_ev_support = 1 # spliced_intron 5802919-5803440 (orient:+) max_ev_support = 2 scaffold_13 + intron 5802919-5803440 asmbl_10879,asmbl_10880,asmbl_10881,asmbl_10882,asmbl_10885 scaffold_13 + retained_intron 5802919-5803440 asmbl_10886 // Exon Skipping and Retention # skipped_exon 6290886-6293319 (orient:+) max_ev_support = 2 # retained_exon 6291541-6291693 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6291541-6291693 asmbl_10901,asmbl_10906 scaffold_13 + intron_skips_exon 6290886-6293319 asmbl_10902,asmbl_10905 // Exon Skipping and Retention # skipped_exon 6291694-6294471 (orient:+) max_ev_support = 2 # retained_exon 6293320-6293472 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6293320-6293472 asmbl_10902,asmbl_10905 scaffold_13 + intron_skips_exon 6291694-6294471 asmbl_10901,asmbl_10906 // Retained and Spliced Intron # retained_intron 6396106-6396402 (orient:+) max_ev_support = 5 # spliced_intron 6396106-6396402 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396106-6396402 asmbl_10908,asmbl_10915 scaffold_13 + retained_intron 6396106-6396402 asmbl_10907 // Retained and Spliced Intron # retained_intron 6396106-6396423 (orient:+) max_ev_support = 5 # spliced_intron 6396106-6396423 (orient:+) max_ev_support = 2 scaffold_13 + intron 6396106-6396423 asmbl_10910 scaffold_13 + retained_intron 6396106-6396423 asmbl_10907 // Exon Skipping and Retention # skipped_exon 6396903-6397368 (orient:+) max_ev_support = 3 # retained_exon 6397184-6397232 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 6397184-6397232 asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916 scaffold_13 + intron_skips_exon 6396903-6397368 asmbl_10909,asmbl_10912,asmbl_10915 // Exon Skipping and Retention # skipped_exon 6396106-6396589 (orient:+) max_ev_support = 3 # retained_exon 6396403-6396467 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 6396403-6396467 asmbl_10908,asmbl_10915 scaffold_13 + intron_skips_exon 6396106-6396589 asmbl_10909,asmbl_10916 // Retained and Spliced Intron # retained_intron 6396903-6397183 (orient:+) max_ev_support = 2 # spliced_intron 6396903-6397183 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396903-6397183 asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916 scaffold_13 + retained_intron 6396903-6397183 asmbl_10911 // Retained and Spliced Intron # retained_intron 6396903-6397368 (orient:+) max_ev_support = 2 # spliced_intron 6396903-6397368 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396903-6397368 asmbl_10909,asmbl_10912,asmbl_10915 scaffold_13 + retained_intron 6396903-6397368 asmbl_10911 // Retained and Spliced Intron # retained_intron 6397233-6397368 (orient:+) max_ev_support = 2 # spliced_intron 6397233-6397368 (orient:+) max_ev_support = 3 scaffold_13 + intron 6397233-6397368 asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10913,asmbl_10916 scaffold_13 + retained_intron 6397233-6397368 asmbl_10911 // Retained and Spliced Intron # retained_intron 6396468-6396589 (orient:+) max_ev_support = 2 # spliced_intron 6396468-6396589 (orient:+) max_ev_support = 3 scaffold_13 + intron 6396468-6396589 asmbl_10907,asmbl_10908,asmbl_10910,asmbl_10911,asmbl_10915 scaffold_13 + retained_intron 6396468-6396589 asmbl_10912,asmbl_10913 // Retained and Spliced Intron # retained_intron 6398067-6398296 (orient:+) max_ev_support = 1 # spliced_intron 6398067-6398296 (orient:+) max_ev_support = 3 scaffold_13 + intron 6398067-6398296 asmbl_10907,asmbl_10908,asmbl_10909,asmbl_10910,asmbl_10911,asmbl_10912,asmbl_10913,asmbl_10915,asmbl_10916 scaffold_13 + retained_intron 6398067-6398296 asmbl_10914 // Retained and Spliced Intron # retained_intron 6616931-6617079 (orient:+) max_ev_support = 2 # spliced_intron 6616931-6617079 (orient:+) max_ev_support = 1 scaffold_13 + intron 6616931-6617079 asmbl_10938 scaffold_13 + retained_intron 6616931-6617079 asmbl_10937,asmbl_10940 // Retained and Spliced Intron # retained_intron 6615541-6615731 (orient:+) max_ev_support = 1 # spliced_intron 6615541-6615731 (orient:+) max_ev_support = 2 scaffold_13 + intron 6615541-6615731 asmbl_10937,asmbl_10938 scaffold_13 + retained_intron 6615541-6615731 asmbl_10939 // Retained and Spliced Intron # retained_intron 6623425-6623614 (orient:+) max_ev_support = 2 # spliced_intron 6623425-6623614 (orient:+) max_ev_support = 2 scaffold_13 + intron 6623425-6623614 asmbl_10943,asmbl_10945 scaffold_13 + retained_intron 6623425-6623614 asmbl_10942,asmbl_10944 // Retained and Spliced Intron # retained_intron 6686158-6686374 (orient:+) max_ev_support = 1 # spliced_intron 6686158-6686374 (orient:+) max_ev_support = 3 scaffold_13 + intron 6686158-6686374 asmbl_10947 scaffold_13 + retained_intron 6686158-6686374 asmbl_10949 // Retained and Spliced Intron # retained_intron 6761797-6761991 (orient:+) max_ev_support = 3 # spliced_intron 6761797-6761991 (orient:+) max_ev_support = 1 scaffold_13 + intron 6761797-6761991 asmbl_10956,asmbl_10957 scaffold_13 + retained_intron 6761797-6761991 asmbl_10955,asmbl_10958 // Retained and Spliced Intron # retained_intron 6762160-6762916 (orient:+) max_ev_support = 3 # spliced_intron 6762160-6762916 (orient:+) max_ev_support = 1 scaffold_13 + intron 6762160-6762916 asmbl_10957 scaffold_13 + retained_intron 6762160-6762916 asmbl_10955,asmbl_10956,asmbl_10958 // Exon Skipping and Retention # skipped_exon 6803745-6804588 (orient:+) max_ev_support = 1 # retained_exon 6804014-6804145 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6804014-6804145 asmbl_10961,asmbl_10965 scaffold_13 + intron_skips_exon 6803745-6804588 asmbl_10962,asmbl_10964 // Retained and Spliced Intron # retained_intron 6852392-6852680 (orient:+) max_ev_support = 2 # spliced_intron 6852392-6852680 (orient:+) max_ev_support = 2 scaffold_13 + intron 6852392-6852680 asmbl_10972,asmbl_10974 scaffold_13 + retained_intron 6852392-6852680 asmbl_10973 // Exon Skipping and Retention # skipped_exon 6884220-6885660 (orient:+) max_ev_support = 2 # retained_exon 6884888-6885037 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6884888-6885037 asmbl_10978,asmbl_10980 scaffold_13 + intron_skips_exon 6884220-6885660 asmbl_10979 // Exon Skipping and Retention # skipped_exon 6885038-6885978 (orient:+) max_ev_support = 2 # retained_exon 6885661-6885747 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 6885661-6885747 asmbl_10979,asmbl_10980 scaffold_13 + intron_skips_exon 6885038-6885978 asmbl_10978 // Retained and Spliced Intron # retained_intron 6985069-6985291 (orient:+) max_ev_support = 1 # spliced_intron 6985069-6985291 (orient:+) max_ev_support = 1 scaffold_13 + intron 6985069-6985291 asmbl_10988 scaffold_13 + retained_intron 6985069-6985291 asmbl_10989 // Retained and Spliced Intron # retained_intron 7109446-7110796 (orient:+) max_ev_support = 3 # spliced_intron 7109446-7110796 (orient:+) max_ev_support = 1 scaffold_13 + intron 7109446-7110796 asmbl_11000 scaffold_13 + retained_intron 7109446-7110796 asmbl_10997,asmbl_11001 // Retained and Spliced Intron # retained_intron 7109506-7110796 (orient:+) max_ev_support = 3 # spliced_intron 7109506-7110796 (orient:+) max_ev_support = 2 scaffold_13 + intron 7109506-7110796 asmbl_10998 scaffold_13 + retained_intron 7109506-7110796 asmbl_10997,asmbl_11001 // Retained and Spliced Intron # retained_intron 7216203-7216365 (orient:+) max_ev_support = 1 # spliced_intron 7216203-7216365 (orient:+) max_ev_support = 2 scaffold_13 + intron 7216203-7216365 asmbl_11007,asmbl_11009,asmbl_11011,asmbl_11012 scaffold_13 + retained_intron 7216203-7216365 asmbl_11006,asmbl_11008,asmbl_11010 // Retained and Spliced Intron # retained_intron 7216462-7216557 (orient:+) max_ev_support = 1 # spliced_intron 7216462-7216557 (orient:+) max_ev_support = 2 scaffold_13 + intron 7216462-7216557 asmbl_11007,asmbl_11008,asmbl_11009,asmbl_11011,asmbl_11012,asmbl_11013 scaffold_13 + retained_intron 7216462-7216557 asmbl_11006,asmbl_11010 // Retained and Spliced Intron # retained_intron 7217965-7218245 (orient:+) max_ev_support = 3 # spliced_intron 7217965-7218245 (orient:+) max_ev_support = 1 scaffold_13 + intron 7217965-7218245 asmbl_11009,asmbl_11013 scaffold_13 + retained_intron 7217965-7218245 asmbl_11006 // Retained and Spliced Intron # retained_intron 7217965-7219584 (orient:+) max_ev_support = 3 # spliced_intron 7217965-7219584 (orient:+) max_ev_support = 2 scaffold_13 + intron 7217965-7219584 asmbl_11007,asmbl_11008,asmbl_11010,asmbl_11011,asmbl_11012 scaffold_13 + retained_intron 7217965-7219584 asmbl_11006 // Retained and Spliced Intron # retained_intron 7217234-7217677 (orient:+) max_ev_support = 1 # spliced_intron 7217234-7217677 (orient:+) max_ev_support = 2 scaffold_13 + intron 7217234-7217677 asmbl_11007,asmbl_11008,asmbl_11009,asmbl_11010 scaffold_13 + retained_intron 7217234-7217677 asmbl_11012,asmbl_11013 // Retained and Spliced Intron # retained_intron 7217234-7217779 (orient:+) max_ev_support = 1 # spliced_intron 7217234-7217779 (orient:+) max_ev_support = 1 scaffold_13 + intron 7217234-7217779 asmbl_11006,asmbl_11011 scaffold_13 + retained_intron 7217234-7217779 asmbl_11012,asmbl_11013 // Retained and Spliced Intron # retained_intron 7371132-7371249 (orient:+) max_ev_support = 1 # spliced_intron 7371132-7371249 (orient:+) max_ev_support = 3 scaffold_13 + intron 7371132-7371249 asmbl_11027 scaffold_13 + retained_intron 7371132-7371249 asmbl_11029 // Retained and Spliced Intron # retained_intron 7655418-7655568 (orient:+) max_ev_support = 3 # spliced_intron 7655418-7655568 (orient:+) max_ev_support = 2 scaffold_13 + intron 7655418-7655568 asmbl_11046,asmbl_11048,asmbl_11049 scaffold_13 + retained_intron 7655418-7655568 asmbl_11045 // Retained and Spliced Intron # retained_intron 7655940-7656087 (orient:+) max_ev_support = 1 # spliced_intron 7655940-7656087 (orient:+) max_ev_support = 2 scaffold_13 + intron 7655940-7656087 asmbl_11045,asmbl_11046,asmbl_11049,asmbl_11050 scaffold_13 + retained_intron 7655940-7656087 asmbl_11048 // Retained and Spliced Intron # retained_intron 7655808-7655891 (orient:+) max_ev_support = 1 # spliced_intron 7655808-7655891 (orient:+) max_ev_support = 2 scaffold_13 + intron 7655808-7655891 asmbl_11045,asmbl_11046,asmbl_11048,asmbl_11049 scaffold_13 + retained_intron 7655808-7655891 asmbl_11050 // Retained and Spliced Intron # retained_intron 7668097-7668467 (orient:+) max_ev_support = 3 # spliced_intron 7668097-7668467 (orient:+) max_ev_support = 1 scaffold_13 + intron 7668097-7668467 asmbl_11054 scaffold_13 + retained_intron 7668097-7668467 asmbl_11053 // Retained and Spliced Intron # retained_intron 7911717-7911794 (orient:+) max_ev_support = 1 # spliced_intron 7911717-7911794 (orient:+) max_ev_support = 2 scaffold_13 + intron 7911717-7911794 asmbl_11065 scaffold_13 + retained_intron 7911717-7911794 asmbl_11066 // Retained and Spliced Intron # retained_intron 8013982-8014196 (orient:+) max_ev_support = 2 # spliced_intron 8013982-8014196 (orient:+) max_ev_support = 2 scaffold_13 + intron 8013982-8014196 asmbl_11073,asmbl_11075,asmbl_11077,asmbl_11078 scaffold_13 + retained_intron 8013982-8014196 asmbl_11076 // Retained and Spliced Intron # retained_intron 8013555-8013678 (orient:+) max_ev_support = 1 # spliced_intron 8013555-8013678 (orient:+) max_ev_support = 2 scaffold_13 + intron 8013555-8013678 asmbl_11073,asmbl_11075,asmbl_11077 scaffold_13 + retained_intron 8013555-8013678 asmbl_11078 // Retained and Spliced Intron # retained_intron 8103489-8103578 (orient:+) max_ev_support = 1 # spliced_intron 8103489-8103578 (orient:+) max_ev_support = 2 scaffold_13 + intron 8103489-8103578 asmbl_11084 scaffold_13 + retained_intron 8103489-8103578 asmbl_11085 // Retained and Spliced Intron # retained_intron 8112220-8112754 (orient:+) max_ev_support = 3 # spliced_intron 8112220-8112754 (orient:+) max_ev_support = 2 scaffold_13 + intron 8112220-8112754 asmbl_11089 scaffold_13 + retained_intron 8112220-8112754 asmbl_11088 // Exon Skipping and Retention # skipped_exon 8348099-8348676 (orient:+) max_ev_support = 2 # retained_exon 8348306-8348586 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 8348306-8348396,8348536-8348586 asmbl_11108 scaffold_13 + intron_skips_exon 8348099-8348676 asmbl_11109 // Retained and Spliced Intron # retained_intron 8357971-8358153 (orient:+) max_ev_support = 4 # spliced_intron 8357971-8358153 (orient:+) max_ev_support = 1 scaffold_13 + intron 8357971-8358153 asmbl_11116 scaffold_13 + retained_intron 8357971-8358153 asmbl_11110,asmbl_11111,asmbl_11112,asmbl_11113,asmbl_11114,asmbl_11115 // Retained and Spliced Intron # retained_intron 8353056-8353540 (orient:+) max_ev_support = 1 # spliced_intron 8353056-8353540 (orient:+) max_ev_support = 1 scaffold_13 + intron 8353056-8353540 asmbl_11114 scaffold_13 + retained_intron 8353056-8353540 asmbl_11113 // Retained and Spliced Intron # retained_intron 8353056-8353594 (orient:+) max_ev_support = 1 # spliced_intron 8353056-8353594 (orient:+) max_ev_support = 2 scaffold_13 + intron 8353056-8353594 asmbl_11110,asmbl_11116 scaffold_13 + retained_intron 8353056-8353594 asmbl_11113 // Retained and Spliced Intron # retained_intron 8518137-8518344 (orient:+) max_ev_support = 1 # spliced_intron 8518137-8518344 (orient:+) max_ev_support = 2 scaffold_13 + intron 8518137-8518344 asmbl_11120 scaffold_13 + retained_intron 8518137-8518344 asmbl_11119 // Retained and Spliced Intron # retained_intron 8518420-8518604 (orient:+) max_ev_support = 3 # spliced_intron 8518420-8518604 (orient:+) max_ev_support = 2 scaffold_13 + intron 8518420-8518604 asmbl_11120 scaffold_13 + retained_intron 8518420-8518604 asmbl_11119 // Retained and Spliced Intron # retained_intron 8683729-8683824 (orient:+) max_ev_support = 5 # spliced_intron 8683729-8683824 (orient:+) max_ev_support = 2 scaffold_13 + intron 8683729-8683824 asmbl_11124 scaffold_13 + retained_intron 8683729-8683824 asmbl_11123 // Exon Skipping and Retention # skipped_exon 8699211-8700085 (orient:+) max_ev_support = 2 # retained_exon 8699291-8699329 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 8699291-8699329 asmbl_11126,asmbl_11127 scaffold_13 + intron_skips_exon 8699211-8700085 asmbl_11125 // Retained and Spliced Intron # retained_intron 8721343-8721448 (orient:+) max_ev_support = 3 # spliced_intron 8721343-8721448 (orient:+) max_ev_support = 3 scaffold_13 + intron 8721343-8721448 asmbl_11129 scaffold_13 + retained_intron 8721343-8721448 asmbl_11130 // Exon Skipping and Retention # skipped_exon 8909268-8912067 (orient:+) max_ev_support = 2 # retained_exon 8909678-8909835 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 8909678-8909835 asmbl_11140 scaffold_13 + intron_skips_exon 8909268-8912067 asmbl_11141 // Retained and Spliced Intron # retained_intron 8955171-8955239 (orient:+) max_ev_support = 2 # spliced_intron 8955171-8955239 (orient:+) max_ev_support = 2 scaffold_13 + intron 8955171-8955239 asmbl_11147,asmbl_11148,asmbl_11149,asmbl_11150 scaffold_13 + retained_intron 8955171-8955239 asmbl_11146 // Retained and Spliced Intron # retained_intron 8955171-8955244 (orient:+) max_ev_support = 2 # spliced_intron 8955171-8955244 (orient:+) max_ev_support = 1 scaffold_13 + intron 8955171-8955244 asmbl_11151 scaffold_13 + retained_intron 8955171-8955244 asmbl_11146 // Retained and Spliced Intron # retained_intron 8955354-8955451 (orient:+) max_ev_support = 1 # spliced_intron 8955354-8955451 (orient:+) max_ev_support = 2 scaffold_13 + intron 8955354-8955451 asmbl_11146,asmbl_11147,asmbl_11150,asmbl_11151 scaffold_13 + retained_intron 8955354-8955451 asmbl_11148,asmbl_11149 // Retained and Spliced Intron # retained_intron 9223165-9223239 (orient:+) max_ev_support = 2 # spliced_intron 9223165-9223239 (orient:+) max_ev_support = 1 scaffold_13 + intron 9223165-9223239 asmbl_11161 scaffold_13 + retained_intron 9223165-9223239 asmbl_11160 // Exon Skipping and Retention # skipped_exon 9237133-9239582 (orient:+) max_ev_support = 1 # retained_exon 9238672-9238827 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 9238672-9238827 asmbl_11164,asmbl_11165 scaffold_13 + intron_skips_exon 9237133-9239582 asmbl_11166 // Retained and Spliced Intron # retained_intron 9254392-9254501 (orient:+) max_ev_support = 2 # spliced_intron 9254392-9254501 (orient:+) max_ev_support = 3 scaffold_13 + intron 9254392-9254501 asmbl_11170 scaffold_13 + retained_intron 9254392-9254501 asmbl_11171 // Retained and Spliced Intron # retained_intron 9254576-9254748 (orient:+) max_ev_support = 2 # spliced_intron 9254576-9254748 (orient:+) max_ev_support = 3 scaffold_13 + intron 9254576-9254748 asmbl_11170 scaffold_13 + retained_intron 9254576-9254748 asmbl_11171 // Retained and Spliced Intron # retained_intron 9553953-9554101 (orient:+) max_ev_support = 3 # spliced_intron 9553953-9554101 (orient:+) max_ev_support = 2 scaffold_13 + intron 9553953-9554101 asmbl_11195 scaffold_13 + retained_intron 9553953-9554101 asmbl_11194 // Exon Skipping and Retention # skipped_exon 9558041-9558424 (orient:+) max_ev_support = 2 # retained_exon 9558209-9558300 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 9558209-9558300 asmbl_11197 scaffold_13 + intron_skips_exon 9558041-9558424 asmbl_11196 // Retained and Spliced Intron # retained_intron 9608243-9608361 (orient:+) max_ev_support = 1 # spliced_intron 9608243-9608361 (orient:+) max_ev_support = 3 scaffold_13 + intron 9608243-9608361 asmbl_11198 scaffold_13 + retained_intron 9608243-9608361 asmbl_11199 // Retained and Spliced Intron # retained_intron 9957806-9957985 (orient:+) max_ev_support = 2 # spliced_intron 9957806-9957985 (orient:+) max_ev_support = 1 scaffold_13 + intron 9957806-9957985 asmbl_11204 scaffold_13 + retained_intron 9957806-9957985 asmbl_11203 // Exon Skipping and Retention # skipped_exon 10433500-10435476 (orient:+) max_ev_support = 2 # retained_exon 10434518-10434625 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 10434518-10434625 asmbl_11224 scaffold_13 + intron_skips_exon 10433500-10435476 asmbl_11222,asmbl_11223,asmbl_11225 // Retained and Spliced Intron # retained_intron 11581870-11581964 (orient:+) max_ev_support = 1 # spliced_intron 11581870-11581964 (orient:+) max_ev_support = 2 scaffold_13 + intron 11581870-11581964 asmbl_11264,asmbl_11265,asmbl_11266,asmbl_11268 scaffold_13 + retained_intron 11581870-11581964 asmbl_11267 // Retained and Spliced Intron # retained_intron 11598971-11599668 (orient:+) max_ev_support = 2 # spliced_intron 11598971-11599668 (orient:+) max_ev_support = 2 scaffold_13 + intron 11598971-11599668 asmbl_11270,asmbl_11275,asmbl_11278,asmbl_11279 scaffold_13 + retained_intron 11598971-11599668 asmbl_11271 // Retained and Spliced Intron # retained_intron 11601420-11601630 (orient:+) max_ev_support = 2 # spliced_intron 11601420-11601630 (orient:+) max_ev_support = 2 scaffold_13 + intron 11601420-11601630 asmbl_11273,asmbl_11274,asmbl_11275,asmbl_11276,asmbl_11277,asmbl_11278,asmbl_11279 scaffold_13 + retained_intron 11601420-11601630 asmbl_11272 // Exon Skipping and Retention # skipped_exon 11585750-11588600 (orient:+) max_ev_support = 2 # retained_exon 11586690-11586913 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 11586690-11586913 asmbl_11275,asmbl_11276 scaffold_13 + intron_skips_exon 11585750-11588600 asmbl_11274,asmbl_11279 // Exon Skipping and Retention # skipped_exon 11598971-11600009 (orient:+) max_ev_support = 2 # retained_exon 11599669-11599743 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 11599669-11599743 asmbl_11275,asmbl_11278,asmbl_11279 scaffold_13 + intron_skips_exon 11598971-11600009 asmbl_11274,asmbl_11276,asmbl_11277,asmbl_11280 // Exon Skipping and Retention # skipped_exon 11585750-11588600 (orient:+) max_ev_support = 2 # retained_exon 11586717-11586913 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 11586717-11586913 asmbl_11277,asmbl_11278,asmbl_11280 scaffold_13 + intron_skips_exon 11585750-11588600 asmbl_11274,asmbl_11279 // Exon Skipping and Retention # skipped_exon 11615251-11616123 (orient:+) max_ev_support = 2 # retained_exon 11615375-11615516 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 11615375-11615516 asmbl_11284 scaffold_13 + intron_skips_exon 11615251-11616123 asmbl_11283 // Retained and Spliced Intron # retained_intron 12039370-12039399 (orient:+) max_ev_support = 1 # spliced_intron 12039370-12039399 (orient:+) max_ev_support = 1 scaffold_13 + intron 12039370-12039399 asmbl_11307 scaffold_13 + retained_intron 12039370-12039399 asmbl_11306 // Retained and Spliced Intron # retained_intron 12104495-12104834 (orient:+) max_ev_support = 3 # spliced_intron 12104495-12104834 (orient:+) max_ev_support = 2 scaffold_13 + intron 12104495-12104834 asmbl_11316 scaffold_13 + retained_intron 12104495-12104834 asmbl_11314 // Retained and Spliced Intron # retained_intron 12104495-12104907 (orient:+) max_ev_support = 3 # spliced_intron 12104495-12104907 (orient:+) max_ev_support = 3 scaffold_13 + intron 12104495-12104907 asmbl_11315 scaffold_13 + retained_intron 12104495-12104907 asmbl_11314 // Retained and Spliced Intron # retained_intron 12105019-12105196 (orient:+) max_ev_support = 1 # spliced_intron 12105019-12105196 (orient:+) max_ev_support = 3 scaffold_13 + intron 12105019-12105196 asmbl_11315 scaffold_13 + retained_intron 12105019-12105196 asmbl_11314 // Exon Skipping and Retention # skipped_exon 12251472-12253769 (orient:+) max_ev_support = 3 # retained_exon 12253535-12253612 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 12253535-12253612 asmbl_11329 scaffold_13 + intron_skips_exon 12251472-12253769 asmbl_11328 // Exon Skipping and Retention # skipped_exon 12251472-12253713 (orient:+) max_ev_support = 1 # retained_exon 12253535-12253612 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 12253535-12253612 asmbl_11329 scaffold_13 + intron_skips_exon 12251472-12253713 asmbl_11334 // Retained and Spliced Intron # retained_intron 12253613-12253769 (orient:+) max_ev_support = 1 # spliced_intron 12253613-12253769 (orient:+) max_ev_support = 3 scaffold_13 + intron 12253613-12253769 asmbl_11329 scaffold_13 + retained_intron 12253613-12253769 asmbl_11333 // Retained and Spliced Intron # retained_intron 13570435-13570458 (orient:+) max_ev_support = 3 # spliced_intron 13570435-13570458 (orient:+) max_ev_support = 1 scaffold_13 + intron 13570435-13570458 asmbl_11379 scaffold_13 + retained_intron 13570435-13570458 asmbl_11376 // Retained and Spliced Intron # retained_intron 13868019-13868068 (orient:+) max_ev_support = 2 # spliced_intron 13868019-13868068 (orient:+) max_ev_support = 1 scaffold_13 + intron 13868019-13868068 asmbl_11394 scaffold_13 + retained_intron 13868019-13868068 asmbl_11393 // Exon Skipping and Retention # skipped_exon 13973928-13974878 (orient:+) max_ev_support = 1 # retained_exon 13974489-13974623 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 13974489-13974623 asmbl_11397,asmbl_11398 scaffold_13 + intron_skips_exon 13973928-13974878 asmbl_11396 // Retained and Spliced Intron # retained_intron 14155681-14155792 (orient:+) max_ev_support = 2 # spliced_intron 14155681-14155792 (orient:+) max_ev_support = 1 scaffold_13 + intron 14155681-14155792 asmbl_11405 scaffold_13 + retained_intron 14155681-14155792 asmbl_11404 // Retained and Spliced Intron # retained_intron 14174306-14174488 (orient:+) max_ev_support = 2 # spliced_intron 14174306-14174488 (orient:+) max_ev_support = 3 scaffold_13 + intron 14174306-14174488 asmbl_11414 scaffold_13 + retained_intron 14174306-14174488 asmbl_11415 // Retained and Spliced Intron # retained_intron 14716696-14716771 (orient:+) max_ev_support = 1 # spliced_intron 14716696-14716771 (orient:+) max_ev_support = 1 scaffold_13 + intron 14716696-14716771 asmbl_11452 scaffold_13 + retained_intron 14716696-14716771 asmbl_11453 // Retained and Spliced Intron # retained_intron 14964496-14964531 (orient:+) max_ev_support = 2 # spliced_intron 14964496-14964531 (orient:+) max_ev_support = 1 scaffold_13 + intron 14964496-14964531 asmbl_11462 scaffold_13 + retained_intron 14964496-14964531 asmbl_11461 // Exon Skipping and Retention # skipped_exon 15100579-15102303 (orient:+) max_ev_support = 2 # retained_exon 15101050-15101105 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15101050-15101105 asmbl_11469 scaffold_13 + intron_skips_exon 15100579-15102303 asmbl_11468 // Exon Skipping and Retention # skipped_exon 15362462-15364730 (orient:+) max_ev_support = 2 # retained_exon 15363483-15363547 (orient:+) max_ev_support = 3 scaffold_13 + retained_exons 15363483-15363547 asmbl_11475 scaffold_13 + intron_skips_exon 15362462-15364730 asmbl_11477 // Exon Skipping and Retention # skipped_exon 15511199-15512431 (orient:+) max_ev_support = 1 # retained_exon 15512103-15512242 (orient:+) max_ev_support = 2 scaffold_13 + retained_exons 15512103-15512242 asmbl_11490,asmbl_11491 scaffold_13 + intron_skips_exon 15511199-15512431 asmbl_11492,asmbl_11493 // Exon Skipping and Retention # skipped_exon 15510436-15512102 (orient:+) max_ev_support = 2 # retained_exon 15511059-15511198 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15511059-15511198 asmbl_11492 scaffold_13 + intron_skips_exon 15510436-15512102 asmbl_11490,asmbl_11491 // Exon Skipping and Retention # skipped_exon 15511199-15512431 (orient:+) max_ev_support = 1 # retained_exon 15512026-15512242 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15512026-15512242 asmbl_11494 scaffold_13 + intron_skips_exon 15511199-15512431 asmbl_11492,asmbl_11493 // Exon Skipping and Retention # skipped_exon 15636177-15637930 (orient:+) max_ev_support = 1 # retained_exon 15637557-15637697 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15637557-15637697 asmbl_11501 scaffold_13 + intron_skips_exon 15636177-15637930 asmbl_11502 // Exon Skipping and Retention # skipped_exon 15635633-15637556 (orient:+) max_ev_support = 1 # retained_exon 15636036-15636176 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15636036-15636176 asmbl_11502 scaffold_13 + intron_skips_exon 15635633-15637556 asmbl_11501 // Retained and Spliced Intron # retained_intron 15672407-15672426 (orient:+) max_ev_support = 1 # spliced_intron 15672407-15672426 (orient:+) max_ev_support = 1 scaffold_13 + intron 15672407-15672426 asmbl_11507 scaffold_13 + retained_intron 15672407-15672426 asmbl_11505 // Exon Skipping and Retention # skipped_exon 15672407-15672506 (orient:+) max_ev_support = 1 # retained_exon 15672427-15672466 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 15672427-15672466 asmbl_11507 scaffold_13 + intron_skips_exon 15672407-15672506 asmbl_11506 // Retained and Spliced Intron # retained_intron 15814218-15814405 (orient:+) max_ev_support = 1 # spliced_intron 15814218-15814405 (orient:+) max_ev_support = 1 scaffold_13 + intron 15814218-15814405 asmbl_11520 scaffold_13 + retained_intron 15814218-15814405 asmbl_11519 // Retained and Spliced Intron # retained_intron 16048795-16048914 (orient:+) max_ev_support = 1 # spliced_intron 16048795-16048914 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048795-16048914 asmbl_11523 scaffold_13 + retained_intron 16048795-16048914 asmbl_11524 // Retained and Spliced Intron # retained_intron 16048875-16048914 (orient:+) max_ev_support = 1 # spliced_intron 16048875-16048914 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048875-16048914 asmbl_11526 scaffold_13 + retained_intron 16048875-16048914 asmbl_11524 // Retained and Spliced Intron # retained_intron 16048875-16048994 (orient:+) max_ev_support = 1 # spliced_intron 16048875-16048994 (orient:+) max_ev_support = 1 scaffold_13 + intron 16048875-16048994 asmbl_11525 scaffold_13 + retained_intron 16048875-16048994 asmbl_11524 // Retained and Spliced Intron # retained_intron 16138003-16138117 (orient:+) max_ev_support = 2 # spliced_intron 16138003-16138117 (orient:+) max_ev_support = 1 scaffold_13 + intron 16138003-16138117 asmbl_11533 scaffold_13 + retained_intron 16138003-16138117 asmbl_11532 // Retained and Spliced Intron # retained_intron 16138073-16138097 (orient:+) max_ev_support = 1 # spliced_intron 16138073-16138097 (orient:+) max_ev_support = 1 scaffold_13 + intron 16138073-16138097 asmbl_11531 scaffold_13 + retained_intron 16138073-16138097 asmbl_11532 // Retained and Spliced Intron # retained_intron 16250502-16250639 (orient:+) max_ev_support = 4 # spliced_intron 16250502-16250639 (orient:+) max_ev_support = 4 scaffold_13 + intron 16250502-16250639 asmbl_11543 scaffold_13 + retained_intron 16250502-16250639 asmbl_11542 // Retained and Spliced Intron # retained_intron 16250502-16250688 (orient:+) max_ev_support = 4 # spliced_intron 16250502-16250688 (orient:+) max_ev_support = 2 scaffold_13 + intron 16250502-16250688 asmbl_11544 scaffold_13 + retained_intron 16250502-16250688 asmbl_11542 // Retained and Spliced Intron # retained_intron 16284302-16284439 (orient:+) max_ev_support = 3 # spliced_intron 16284302-16284439 (orient:+) max_ev_support = 2 scaffold_13 + intron 16284302-16284439 asmbl_11546 scaffold_13 + retained_intron 16284302-16284439 asmbl_11545 // Retained and Spliced Intron # retained_intron 16434082-16434150 (orient:+) max_ev_support = 2 # spliced_intron 16434082-16434150 (orient:+) max_ev_support = 1 scaffold_13 + intron 16434082-16434150 asmbl_11552 scaffold_13 + retained_intron 16434082-16434150 asmbl_11551 // Retained and Spliced Intron # retained_intron 16437382-16437484 (orient:+) max_ev_support = 2 # spliced_intron 16437382-16437484 (orient:+) max_ev_support = 1 scaffold_13 + intron 16437382-16437484 asmbl_11558 scaffold_13 + retained_intron 16437382-16437484 asmbl_11555 // Retained and Spliced Intron # retained_intron 16436550-16436943 (orient:+) max_ev_support = 1 # spliced_intron 16436550-16436943 (orient:+) max_ev_support = 3 scaffold_13 + intron 16436550-16436943 asmbl_11553,asmbl_11554 scaffold_13 + retained_intron 16436550-16436943 asmbl_11557,asmbl_11558 // Exon Skipping and Retention # skipped_exon 16437030-16437484 (orient:+) max_ev_support = 3 # retained_exon 16437298-16437381 (orient:+) max_ev_support = 1 scaffold_13 + retained_exons 16437298-16437381 asmbl_11558 scaffold_13 + intron_skips_exon 16437030-16437484 asmbl_11553,asmbl_11557 // Retained and Spliced Intron # retained_intron 16515276-16515326 (orient:+) max_ev_support = 2 # spliced_intron 16515276-16515326 (orient:+) max_ev_support = 1 scaffold_13 + intron 16515276-16515326 asmbl_11560 scaffold_13 + retained_intron 16515276-16515326 asmbl_11559 // Retained and Spliced Intron # retained_intron 2091-2231 (orient:+) max_ev_support = 3 # spliced_intron 2091-2231 (orient:+) max_ev_support = 1 scaffold_1325 + intron 2091-2231 asmbl_11685,asmbl_11686,asmbl_11687 scaffold_1325 + retained_intron 2091-2231 asmbl_11684 // Retained and Spliced Intron # retained_intron 1914-2398 (orient:+) max_ev_support = 1 # spliced_intron 1914-2398 (orient:+) max_ev_support = 1 scaffold_1352 + intron 1914-2398 asmbl_11695 scaffold_1352 + retained_intron 1914-2398 asmbl_11694 // Retained and Spliced Intron # retained_intron 8309-8646 (orient:-) max_ev_support = 3 # spliced_intron 8309-8646 (orient:-) max_ev_support = 1 scaffold_137 - intron 8309-8646 asmbl_11706 scaffold_137 - retained_intron 8309-8646 asmbl_11705 // Exon Skipping and Retention # skipped_exon 404659-405204 (orient:+) max_ev_support = 1 # retained_exon 404838-405058 (orient:+) max_ev_support = 4 scaffold_14 + retained_exons 404838-405058 asmbl_11720,asmbl_11721,asmbl_11722,asmbl_11723 scaffold_14 + intron_skips_exon 404659-405204 asmbl_11726,asmbl_11727,asmbl_11728,asmbl_11729,asmbl_11730 // Retained and Spliced Intron # retained_intron 405268-405492 (orient:+) max_ev_support = 3 # spliced_intron 405268-405492 (orient:+) max_ev_support = 3 scaffold_14 + intron 405268-405492 asmbl_11722,asmbl_11726,asmbl_11730 scaffold_14 + retained_intron 405268-405492 asmbl_11720,asmbl_11721,asmbl_11724,asmbl_11729 // Retained and Spliced Intron # retained_intron 405268-405642 (orient:+) max_ev_support = 3 # spliced_intron 405268-405642 (orient:+) max_ev_support = 3 scaffold_14 + intron 405268-405642 asmbl_11723,asmbl_11725,asmbl_11727,asmbl_11728 scaffold_14 + retained_intron 405268-405642 asmbl_11720,asmbl_11721,asmbl_11724,asmbl_11729 // Retained and Spliced Intron # retained_intron 399142-399238 (orient:+) max_ev_support = 1 # spliced_intron 399142-399238 (orient:+) max_ev_support = 1 scaffold_14 + intron 399142-399238 asmbl_11721,asmbl_11723,asmbl_11726,asmbl_11731 scaffold_14 + retained_intron 399142-399238 asmbl_11722 // Retained and Spliced Intron # retained_intron 399142-399368 (orient:+) max_ev_support = 1 # spliced_intron 399142-399368 (orient:+) max_ev_support = 2 scaffold_14 + intron 399142-399368 asmbl_11720,asmbl_11725,asmbl_11729 scaffold_14 + retained_intron 399142-399368 asmbl_11722 // Retained and Spliced Intron # retained_intron 399142-399371 (orient:+) max_ev_support = 1 # spliced_intron 399142-399371 (orient:+) max_ev_support = 1 scaffold_14 + intron 399142-399371 asmbl_11728,asmbl_11730 scaffold_14 + retained_intron 399142-399371 asmbl_11722 // Retained and Spliced Intron # retained_intron 405059-405204 (orient:+) max_ev_support = 3 # spliced_intron 405059-405204 (orient:+) max_ev_support = 3 scaffold_14 + intron 405059-405204 asmbl_11720,asmbl_11721,asmbl_11722,asmbl_11723 scaffold_14 + retained_intron 405059-405204 asmbl_11724 // Retained and Spliced Intron # retained_intron 405082-405204 (orient:+) max_ev_support = 3 # spliced_intron 405082-405204 (orient:+) max_ev_support = 1 scaffold_14 + intron 405082-405204 asmbl_11725 scaffold_14 + retained_intron 405082-405204 asmbl_11724 // Retained and Spliced Intron # retained_intron 583074-583762 (orient:+) max_ev_support = 3 # spliced_intron 583074-583762 (orient:+) max_ev_support = 2 scaffold_14 + intron 583074-583762 asmbl_11742,asmbl_11745 scaffold_14 + retained_intron 583074-583762 asmbl_11741 // Retained and Spliced Intron # retained_intron 583521-583652 (orient:+) max_ev_support = 3 # spliced_intron 583521-583652 (orient:+) max_ev_support = 1 scaffold_14 + intron 583521-583652 asmbl_11746 scaffold_14 + retained_intron 583521-583652 asmbl_11741 // Exon Skipping and Retention # skipped_exon 868522-868972 (orient:+) max_ev_support = 1 # retained_exon 868708-868738 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 868708-868738 asmbl_11747 scaffold_14 + intron_skips_exon 868522-868972 asmbl_11748,asmbl_11749,asmbl_11750,asmbl_11751 // Exon Skipping and Retention # skipped_exon 869132-871148 (orient:+) max_ev_support = 1 # retained_exon 870397-870450 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 870397-870450 asmbl_11748,asmbl_11749,asmbl_11750 scaffold_14 + intron_skips_exon 869132-871148 asmbl_11751 // Retained and Spliced Intron # retained_intron 1069987-1070084 (orient:+) max_ev_support = 2 # spliced_intron 1069987-1070084 (orient:+) max_ev_support = 1 scaffold_14 + intron 1069987-1070084 asmbl_11764,asmbl_11765,asmbl_11767,asmbl_11768,asmbl_11769,asmbl_11770,asmbl_11771,asmbl_11772,asmbl_11773 scaffold_14 + retained_intron 1069987-1070084 asmbl_11762,asmbl_11763 // Retained and Spliced Intron # retained_intron 1069987-1070949 (orient:+) max_ev_support = 2 # spliced_intron 1069987-1070949 (orient:+) max_ev_support = 1 scaffold_14 + intron 1069987-1070949 asmbl_11766 scaffold_14 + retained_intron 1069987-1070949 asmbl_11762 // Retained and Spliced Intron # retained_intron 1070202-1070398 (orient:+) max_ev_support = 2 # spliced_intron 1070202-1070398 (orient:+) max_ev_support = 1 scaffold_14 + intron 1070202-1070398 asmbl_11764 scaffold_14 + retained_intron 1070202-1070398 asmbl_11762,asmbl_11765,asmbl_11769,asmbl_11770,asmbl_11773 // Retained and Spliced Intron # retained_intron 1070202-1070949 (orient:+) max_ev_support = 2 # spliced_intron 1070202-1070949 (orient:+) max_ev_support = 2 scaffold_14 + intron 1070202-1070949 asmbl_11763,asmbl_11767,asmbl_11768,asmbl_11771,asmbl_11772 scaffold_14 + retained_intron 1070202-1070949 asmbl_11762,asmbl_11765,asmbl_11769,asmbl_11770,asmbl_11773 // Retained and Spliced Intron # retained_intron 1067639-1067750 (orient:+) max_ev_support = 1 # spliced_intron 1067639-1067750 (orient:+) max_ev_support = 1 scaffold_14 + intron 1067639-1067750 asmbl_11767,asmbl_11769,asmbl_11770,asmbl_11771 scaffold_14 + retained_intron 1067639-1067750 asmbl_11764,asmbl_11765,asmbl_11766,asmbl_11768,asmbl_11772,asmbl_11773 // Exon Skipping and Retention # skipped_exon 1069987-1070949 (orient:+) max_ev_support = 1 # retained_exon 1070085-1070201 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 1070085-1070201 asmbl_11764,asmbl_11767,asmbl_11768,asmbl_11771,asmbl_11772 scaffold_14 + intron_skips_exon 1069987-1070949 asmbl_11766 // Retained and Spliced Intron # retained_intron 1069783-1069872 (orient:+) max_ev_support = 1 # spliced_intron 1069783-1069872 (orient:+) max_ev_support = 1 scaffold_14 + intron 1069783-1069872 asmbl_11764,asmbl_11765,asmbl_11766,asmbl_11771,asmbl_11772 scaffold_14 + retained_intron 1069783-1069872 asmbl_11769 // Retained and Spliced Intron # retained_intron 1069783-1069875 (orient:+) max_ev_support = 1 # spliced_intron 1069783-1069875 (orient:+) max_ev_support = 1 scaffold_14 + intron 1069783-1069875 asmbl_11767,asmbl_11768,asmbl_11770,asmbl_11773 scaffold_14 + retained_intron 1069783-1069875 asmbl_11769 // Retained and Spliced Intron # retained_intron 1094343-1094586 (orient:+) max_ev_support = 2 # spliced_intron 1094343-1094586 (orient:+) max_ev_support = 2 scaffold_14 + intron 1094343-1094586 asmbl_11777 scaffold_14 + retained_intron 1094343-1094586 asmbl_11776 // Retained and Spliced Intron # retained_intron 1094470-1094586 (orient:+) max_ev_support = 2 # spliced_intron 1094470-1094586 (orient:+) max_ev_support = 2 scaffold_14 + intron 1094470-1094586 asmbl_11775 scaffold_14 + retained_intron 1094470-1094586 asmbl_11776 // Retained and Spliced Intron # retained_intron 1127545-1127620 (orient:+) max_ev_support = 3 # spliced_intron 1127545-1127620 (orient:+) max_ev_support = 3 scaffold_14 + intron 1127545-1127620 asmbl_11783 scaffold_14 + retained_intron 1127545-1127620 asmbl_11782 // Retained and Spliced Intron # retained_intron 1178420-1178543 (orient:+) max_ev_support = 3 # spliced_intron 1178420-1178543 (orient:+) max_ev_support = 3 scaffold_14 + intron 1178420-1178543 asmbl_11787 scaffold_14 + retained_intron 1178420-1178543 asmbl_11788 // Retained and Spliced Intron # retained_intron 1325764-1325879 (orient:+) max_ev_support = 2 # spliced_intron 1325764-1325879 (orient:+) max_ev_support = 2 scaffold_14 + intron 1325764-1325879 asmbl_11791 scaffold_14 + retained_intron 1325764-1325879 asmbl_11792 // Retained and Spliced Intron # retained_intron 1614630-1615932 (orient:+) max_ev_support = 5 # spliced_intron 1614630-1615932 (orient:+) max_ev_support = 1 scaffold_14 + intron 1614630-1615932 asmbl_11806 scaffold_14 + retained_intron 1614630-1615932 asmbl_11803,asmbl_11804,asmbl_11805 // Exon Skipping and Retention # skipped_exon 1721037-1721580 (orient:+) max_ev_support = 3 # retained_exon 1721212-1721487 (orient:+) max_ev_support = 3 scaffold_14 + retained_exons 1721212-1721286,1721407-1721487 asmbl_11808 scaffold_14 + intron_skips_exon 1721037-1721580 asmbl_11807 // Exon Skipping and Retention # skipped_exon 2297643-2298415 (orient:+) max_ev_support = 1 # retained_exon 2298111-2298222 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 2298111-2298222 asmbl_11828,asmbl_11832 scaffold_14 + intron_skips_exon 2297643-2298415 asmbl_11829 // Retained and Spliced Intron # retained_intron 2301569-2301796 (orient:+) max_ev_support = 3 # spliced_intron 2301569-2301796 (orient:+) max_ev_support = 1 scaffold_14 + intron 2301569-2301796 asmbl_11827 scaffold_14 + retained_intron 2301569-2301796 asmbl_11828 // Retained and Spliced Intron # retained_intron 2573325-2573401 (orient:+) max_ev_support = 4 # spliced_intron 2573325-2573401 (orient:+) max_ev_support = 3 scaffold_14 + intron 2573325-2573401 asmbl_11850 scaffold_14 + retained_intron 2573325-2573401 asmbl_11851 // Retained and Spliced Intron # retained_intron 2895797-2895880 (orient:+) max_ev_support = 2 # spliced_intron 2895797-2895880 (orient:+) max_ev_support = 2 scaffold_14 + intron 2895797-2895880 asmbl_11862 scaffold_14 + retained_intron 2895797-2895880 asmbl_11863 // Retained and Spliced Intron # retained_intron 2899140-2899275 (orient:+) max_ev_support = 3 # spliced_intron 2899140-2899275 (orient:+) max_ev_support = 3 scaffold_14 + intron 2899140-2899275 asmbl_11865 scaffold_14 + retained_intron 2899140-2899275 asmbl_11864 // Retained and Spliced Intron # retained_intron 2898639-2898894 (orient:+) max_ev_support = 2 # spliced_intron 2898639-2898894 (orient:+) max_ev_support = 3 scaffold_14 + intron 2898639-2898894 asmbl_11864,asmbl_11865 scaffold_14 + retained_intron 2898639-2898894 asmbl_11866 // Retained and Spliced Intron # retained_intron 3097650-3097893 (orient:+) max_ev_support = 1 # spliced_intron 3097650-3097893 (orient:+) max_ev_support = 2 scaffold_14 + intron 3097650-3097893 asmbl_11872 scaffold_14 + retained_intron 3097650-3097893 asmbl_11873 // Exon Skipping and Retention # skipped_exon 3159205-3159866 (orient:+) max_ev_support = 2 # retained_exon 3159316-3159468 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3159316-3159468 asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11891,asmbl_11892,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898 scaffold_14 + intron_skips_exon 3159205-3159866 asmbl_11882,asmbl_11893 // Retained and Spliced Intron # retained_intron 3161368-3162176 (orient:+) max_ev_support = 1 # spliced_intron 3161368-3162176 (orient:+) max_ev_support = 1 scaffold_14 + intron 3161368-3162176 asmbl_11880,asmbl_11883,asmbl_11885,asmbl_11890,asmbl_11892,asmbl_11895,asmbl_11898 scaffold_14 + retained_intron 3161368-3162176 asmbl_11881,asmbl_11886,asmbl_11894,asmbl_11896,asmbl_11897 // Exon Skipping and Retention # skipped_exon 3156204-3157076 (orient:+) max_ev_support = 2 # retained_exon 3156649-3156720 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 3156649-3156720 asmbl_11883,asmbl_11886,asmbl_11891,asmbl_11892,asmbl_11894,asmbl_11898 scaffold_14 + intron_skips_exon 3156204-3157076 asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11885,asmbl_11889,asmbl_11890,asmbl_11893,asmbl_11895,asmbl_11896,asmbl_11897 // Retained and Spliced Intron # retained_intron 3165584-3165934 (orient:+) max_ev_support = 2 # spliced_intron 3165584-3165934 (orient:+) max_ev_support = 1 scaffold_14 + intron 3165584-3165934 asmbl_11888 scaffold_14 + retained_intron 3165584-3165934 asmbl_11884,asmbl_11885,asmbl_11898 // Retained and Spliced Intron # retained_intron 3161005-3161274 (orient:+) max_ev_support = 1 # spliced_intron 3161005-3161274 (orient:+) max_ev_support = 1 scaffold_14 + intron 3161005-3161274 asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11895,asmbl_11896,asmbl_11897,asmbl_11898 scaffold_14 + retained_intron 3161005-3161274 asmbl_11889 // Retained and Spliced Intron # retained_intron 3152638-3152817 (orient:+) max_ev_support = 1 # spliced_intron 3152638-3152817 (orient:+) max_ev_support = 2 scaffold_14 + intron 3152638-3152817 asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11893,asmbl_11895,asmbl_11896,asmbl_11898 scaffold_14 + retained_intron 3152638-3152817 asmbl_11894,asmbl_11897 // Retained and Spliced Intron # retained_intron 3159934-3160025 (orient:+) max_ev_support = 1 # spliced_intron 3159934-3160025 (orient:+) max_ev_support = 2 scaffold_14 + intron 3159934-3160025 asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11882,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11897,asmbl_11898 scaffold_14 + retained_intron 3159934-3160025 asmbl_11895,asmbl_11896 // Retained and Spliced Intron # retained_intron 3160065-3160251 (orient:+) max_ev_support = 1 # spliced_intron 3160065-3160251 (orient:+) max_ev_support = 2 scaffold_14 + intron 3160065-3160251 asmbl_11879,asmbl_11880,asmbl_11881,asmbl_11882,asmbl_11883,asmbl_11885,asmbl_11886,asmbl_11889,asmbl_11890,asmbl_11892,asmbl_11894,asmbl_11897,asmbl_11898 scaffold_14 + retained_intron 3160065-3160251 asmbl_11895,asmbl_11896 // Exon Skipping and Retention # skipped_exon 3225324-3226535 (orient:+) max_ev_support = 1 # retained_exon 3225735-3225851 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 3225735-3225851 asmbl_11900 scaffold_14 + intron_skips_exon 3225324-3226535 asmbl_11899,asmbl_11901 // Retained and Spliced Intron # retained_intron 3244204-3244521 (orient:+) max_ev_support = 2 # spliced_intron 3244204-3244521 (orient:+) max_ev_support = 2 scaffold_14 + intron 3244204-3244521 asmbl_11903,asmbl_11907,asmbl_11909 scaffold_14 + retained_intron 3244204-3244521 asmbl_11902,asmbl_11905 // Retained and Spliced Intron # retained_intron 3243702-3243805 (orient:+) max_ev_support = 2 # spliced_intron 3243702-3243805 (orient:+) max_ev_support = 2 scaffold_14 + intron 3243702-3243805 asmbl_11902,asmbl_11903,asmbl_11907 scaffold_14 + retained_intron 3243702-3243805 asmbl_11905,asmbl_11906,asmbl_11909 // Retained and Spliced Intron # retained_intron 3240126-3240355 (orient:+) max_ev_support = 1 # spliced_intron 3240126-3240355 (orient:+) max_ev_support = 2 scaffold_14 + intron 3240126-3240355 asmbl_11902,asmbl_11903,asmbl_11908 scaffold_14 + retained_intron 3240126-3240355 asmbl_11907 // Retained and Spliced Intron # retained_intron 3388662-3389749 (orient:+) max_ev_support = 2 # spliced_intron 3388662-3389749 (orient:+) max_ev_support = 2 scaffold_14 + intron 3388662-3389749 asmbl_11916 scaffold_14 + retained_intron 3388662-3389749 asmbl_11915 // Retained and Spliced Intron # retained_intron 3418982-3419012 (orient:+) max_ev_support = 2 # spliced_intron 3418982-3419012 (orient:+) max_ev_support = 1 scaffold_14 + intron 3418982-3419012 asmbl_11922 scaffold_14 + retained_intron 3418982-3419012 asmbl_11921 // Retained and Spliced Intron # retained_intron 3588641-3588755 (orient:+) max_ev_support = 2 # spliced_intron 3588641-3588755 (orient:+) max_ev_support = 1 scaffold_14 + intron 3588641-3588755 asmbl_11927 scaffold_14 + retained_intron 3588641-3588755 asmbl_11926,asmbl_11928 // Retained and Spliced Intron # retained_intron 3588641-3588784 (orient:+) max_ev_support = 2 # spliced_intron 3588641-3588784 (orient:+) max_ev_support = 1 scaffold_14 + intron 3588641-3588784 asmbl_11929,asmbl_11930 scaffold_14 + retained_intron 3588641-3588784 asmbl_11926,asmbl_11928 // Retained and Spliced Intron # retained_intron 3590570-3591023 (orient:+) max_ev_support = 3 # spliced_intron 3590570-3591023 (orient:+) max_ev_support = 1 scaffold_14 + intron 3590570-3591023 asmbl_11932 scaffold_14 + retained_intron 3590570-3591023 asmbl_11931 // Exon Skipping and Retention # skipped_exon 3796395-3797745 (orient:+) max_ev_support = 2 # retained_exon 3797031-3797066 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 3797031-3797066 asmbl_11940 scaffold_14 + intron_skips_exon 3796395-3797745 asmbl_11939 // Retained and Spliced Intron # retained_intron 4116419-4116564 (orient:+) max_ev_support = 3 # spliced_intron 4116419-4116564 (orient:+) max_ev_support = 3 scaffold_14 + intron 4116419-4116564 asmbl_11946 scaffold_14 + retained_intron 4116419-4116564 asmbl_11947,asmbl_11948,asmbl_11949 // Retained and Spliced Intron # retained_intron 4116590-4116724 (orient:+) max_ev_support = 3 # spliced_intron 4116590-4116724 (orient:+) max_ev_support = 3 scaffold_14 + intron 4116590-4116724 asmbl_11946,asmbl_11947,asmbl_11950 scaffold_14 + retained_intron 4116590-4116724 asmbl_11948,asmbl_11949 // Retained and Spliced Intron # retained_intron 4116785-4116951 (orient:+) max_ev_support = 3 # spliced_intron 4116785-4116951 (orient:+) max_ev_support = 3 scaffold_14 + intron 4116785-4116951 asmbl_11946,asmbl_11947,asmbl_11949,asmbl_11950 scaffold_14 + retained_intron 4116785-4116951 asmbl_11948 // Exon Skipping and Retention # skipped_exon 4153501-4154454 (orient:+) max_ev_support = 1 # retained_exon 4154138-4154261 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 4154138-4154261 asmbl_11956 scaffold_14 + intron_skips_exon 4153501-4154454 asmbl_11955,asmbl_11957 // Retained and Spliced Intron # retained_intron 5161976-5162170 (orient:+) max_ev_support = 1 # spliced_intron 5161976-5162170 (orient:+) max_ev_support = 3 scaffold_14 + intron 5161976-5162170 asmbl_11983 scaffold_14 + retained_intron 5161976-5162170 asmbl_11984 // Retained and Spliced Intron # retained_intron 5451274-5451514 (orient:+) max_ev_support = 2 # spliced_intron 5451274-5451514 (orient:+) max_ev_support = 2 scaffold_14 + intron 5451274-5451514 asmbl_11991 scaffold_14 + retained_intron 5451274-5451514 asmbl_11992 // Retained and Spliced Intron # retained_intron 5451413-5451514 (orient:+) max_ev_support = 2 # spliced_intron 5451413-5451514 (orient:+) max_ev_support = 3 scaffold_14 + intron 5451413-5451514 asmbl_11990 scaffold_14 + retained_intron 5451413-5451514 asmbl_11992 // Retained and Spliced Intron # retained_intron 5597398-5598031 (orient:+) max_ev_support = 1 # spliced_intron 5597398-5598031 (orient:+) max_ev_support = 2 scaffold_14 + intron 5597398-5598031 asmbl_12008 scaffold_14 + retained_intron 5597398-5598031 asmbl_12009 // Retained and Spliced Intron # retained_intron 5597207-5597301 (orient:+) max_ev_support = 2 # spliced_intron 5597207-5597301 (orient:+) max_ev_support = 2 scaffold_14 + intron 5597207-5597301 asmbl_12008,asmbl_12009 scaffold_14 + retained_intron 5597207-5597301 asmbl_12010 // Retained and Spliced Intron # retained_intron 6281800-6282048 (orient:+) max_ev_support = 3 # spliced_intron 6281800-6282048 (orient:+) max_ev_support = 2 scaffold_14 + intron 6281800-6282048 asmbl_12037 scaffold_14 + retained_intron 6281800-6282048 asmbl_12034,asmbl_12035,asmbl_12036,asmbl_12040 // Exon Skipping and Retention # skipped_exon 6282250-6283420 (orient:+) max_ev_support = 2 # retained_exon 6282857-6282910 (orient:+) max_ev_support = 3 scaffold_14 + retained_exons 6282857-6282910 asmbl_12034,asmbl_12035,asmbl_12037,asmbl_12040 scaffold_14 + intron_skips_exon 6282250-6283420 asmbl_12036 // Retained and Spliced Intron # retained_intron 6283532-6283649 (orient:+) max_ev_support = 2 # spliced_intron 6283532-6283649 (orient:+) max_ev_support = 3 scaffold_14 + intron 6283532-6283649 asmbl_12034,asmbl_12035,asmbl_12039 scaffold_14 + retained_intron 6283532-6283649 asmbl_12036,asmbl_12037,asmbl_12038,asmbl_12040 // Retained and Spliced Intron # retained_intron 6291638-6291779 (orient:+) max_ev_support = 2 # spliced_intron 6291638-6291779 (orient:+) max_ev_support = 2 scaffold_14 + intron 6291638-6291779 asmbl_12043 scaffold_14 + retained_intron 6291638-6291779 asmbl_12045 // Retained and Spliced Intron # retained_intron 6412534-6412614 (orient:+) max_ev_support = 1 # spliced_intron 6412534-6412614 (orient:+) max_ev_support = 2 scaffold_14 + intron 6412534-6412614 asmbl_12055 scaffold_14 + retained_intron 6412534-6412614 asmbl_12056 // Retained and Spliced Intron # retained_intron 6582351-6582780 (orient:+) max_ev_support = 2 # spliced_intron 6582351-6582780 (orient:+) max_ev_support = 2 scaffold_14 + intron 6582351-6582780 asmbl_12064 scaffold_14 + retained_intron 6582351-6582780 asmbl_12065 // Retained and Spliced Intron # retained_intron 6596360-6596436 (orient:+) max_ev_support = 2 # spliced_intron 6596360-6596436 (orient:+) max_ev_support = 2 scaffold_14 + intron 6596360-6596436 asmbl_12069 scaffold_14 + retained_intron 6596360-6596436 asmbl_12070 // Exon Skipping and Retention # skipped_exon 6901549-6902436 (orient:+) max_ev_support = 2 # retained_exon 6901924-6901956 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 6901924-6901956 asmbl_12091 scaffold_14 + intron_skips_exon 6901549-6902436 asmbl_12090 // Retained and Spliced Intron # retained_intron 6938531-6938657 (orient:+) max_ev_support = 1 # spliced_intron 6938531-6938657 (orient:+) max_ev_support = 2 scaffold_14 + intron 6938531-6938657 asmbl_12097 scaffold_14 + retained_intron 6938531-6938657 asmbl_12098 // Exon Skipping and Retention # skipped_exon 7027503-7029081 (orient:+) max_ev_support = 1 # retained_exon 7028469-7028528 (orient:+) max_ev_support = 4 scaffold_14 + retained_exons 7028469-7028528 asmbl_12103 scaffold_14 + intron_skips_exon 7027503-7029081 asmbl_12104 // Retained and Spliced Intron # retained_intron 7215130-7215744 (orient:+) max_ev_support = 2 # spliced_intron 7215130-7215744 (orient:+) max_ev_support = 3 scaffold_14 + intron 7215130-7215744 asmbl_12112 scaffold_14 + retained_intron 7215130-7215744 asmbl_12113,asmbl_12114 // Retained and Spliced Intron # retained_intron 7215812-7216426 (orient:+) max_ev_support = 2 # spliced_intron 7215812-7216426 (orient:+) max_ev_support = 3 scaffold_14 + intron 7215812-7216426 asmbl_12112,asmbl_12114 scaffold_14 + retained_intron 7215812-7216426 asmbl_12113 // Retained and Spliced Intron # retained_intron 7216560-7216831 (orient:+) max_ev_support = 2 # spliced_intron 7216560-7216831 (orient:+) max_ev_support = 3 scaffold_14 + intron 7216560-7216831 asmbl_12112,asmbl_12114 scaffold_14 + retained_intron 7216560-7216831 asmbl_12113 // Retained and Spliced Intron # retained_intron 7216942-7217143 (orient:+) max_ev_support = 2 # spliced_intron 7216942-7217143 (orient:+) max_ev_support = 3 scaffold_14 + intron 7216942-7217143 asmbl_12112,asmbl_12114 scaffold_14 + retained_intron 7216942-7217143 asmbl_12113 // Exon Skipping and Retention # skipped_exon 7294285-7295260 (orient:+) max_ev_support = 2 # retained_exon 7295149-7295226 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7295149-7295226 asmbl_12124,asmbl_12127 scaffold_14 + intron_skips_exon 7294285-7295260 asmbl_12125 // Exon Skipping and Retention # skipped_exon 7295227-7295668 (orient:+) max_ev_support = 2 # retained_exon 7295261-7295362 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7295261-7295362 asmbl_12125 scaffold_14 + intron_skips_exon 7295227-7295668 asmbl_12124,asmbl_12127 // Retained and Spliced Intron # retained_intron 7297974-7298196 (orient:+) max_ev_support = 2 # spliced_intron 7297974-7298196 (orient:+) max_ev_support = 2 scaffold_14 + intron 7297974-7298196 asmbl_12124,asmbl_12125,asmbl_12127,asmbl_12128,asmbl_12129,asmbl_12130 scaffold_14 + retained_intron 7297974-7298196 asmbl_12126 // Retained and Spliced Intron # retained_intron 7298351-7298744 (orient:+) max_ev_support = 1 # spliced_intron 7298351-7298744 (orient:+) max_ev_support = 2 scaffold_14 + intron 7298351-7298744 asmbl_12124,asmbl_12125,asmbl_12128 scaffold_14 + retained_intron 7298351-7298744 asmbl_12127,asmbl_12129 // Retained and Spliced Intron # retained_intron 7298482-7298744 (orient:+) max_ev_support = 1 # spliced_intron 7298482-7298744 (orient:+) max_ev_support = 1 scaffold_14 + intron 7298482-7298744 asmbl_12130 scaffold_14 + retained_intron 7298482-7298744 asmbl_12127,asmbl_12129 // Exon Skipping and Retention # skipped_exon 7432572-7433301 (orient:+) max_ev_support = 2 # retained_exon 7432963-7432983 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 7432963-7432983 asmbl_12137 scaffold_14 + intron_skips_exon 7432572-7433301 asmbl_12138,asmbl_12139 // Exon Skipping and Retention # skipped_exon 7495217-7496741 (orient:+) max_ev_support = 1 # retained_exon 7495630-7496652 (orient:+) max_ev_support = 4 scaffold_14 + retained_exons 7495630-7495697,7495943-7496393,7496591-7496652 asmbl_12144 scaffold_14 + intron_skips_exon 7495217-7496741 asmbl_12148 // Retained and Spliced Intron # retained_intron 7495217-7495625 (orient:+) max_ev_support = 2 # spliced_intron 7495217-7495625 (orient:+) max_ev_support = 1 scaffold_14 + intron 7495217-7495625 asmbl_12145 scaffold_14 + retained_intron 7495217-7495625 asmbl_12146 // Retained and Spliced Intron # retained_intron 7495217-7495629 (orient:+) max_ev_support = 2 # spliced_intron 7495217-7495629 (orient:+) max_ev_support = 3 scaffold_14 + intron 7495217-7495629 asmbl_12144 scaffold_14 + retained_intron 7495217-7495629 asmbl_12146 // Retained and Spliced Intron # retained_intron 7525035-7525343 (orient:+) max_ev_support = 3 # spliced_intron 7525035-7525343 (orient:+) max_ev_support = 2 scaffold_14 + intron 7525035-7525343 asmbl_12151,asmbl_12153 scaffold_14 + retained_intron 7525035-7525343 asmbl_12150,asmbl_12152 // Retained and Spliced Intron # retained_intron 8002248-8002475 (orient:+) max_ev_support = 4 # spliced_intron 8002248-8002475 (orient:+) max_ev_support = 3 scaffold_14 + intron 8002248-8002475 asmbl_12164,asmbl_12165 scaffold_14 + retained_intron 8002248-8002475 asmbl_12162,asmbl_12163 // Exon Skipping and Retention # skipped_exon 8007446-8007816 (orient:+) max_ev_support = 1 # retained_exon 8007596-8007645 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 8007596-8007645 asmbl_12166 scaffold_14 + intron_skips_exon 8007446-8007816 asmbl_12170 // Retained and Spliced Intron # retained_intron 8007646-8007816 (orient:+) max_ev_support = 2 # spliced_intron 8007646-8007816 (orient:+) max_ev_support = 2 scaffold_14 + intron 8007646-8007816 asmbl_12166,asmbl_12169 scaffold_14 + retained_intron 8007646-8007816 asmbl_12168 // Exon Skipping and Retention # skipped_exon 8224202-8226095 (orient:+) max_ev_support = 2 # retained_exon 8224594-8224751 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 8224594-8224751 asmbl_12191 scaffold_14 + intron_skips_exon 8224202-8226095 asmbl_12190 // Retained and Spliced Intron # retained_intron 8278439-8279308 (orient:+) max_ev_support = 2 # spliced_intron 8278439-8279308 (orient:+) max_ev_support = 1 scaffold_14 + intron 8278439-8279308 asmbl_12196 scaffold_14 + retained_intron 8278439-8279308 asmbl_12193,asmbl_12194 // Exon Skipping and Retention # skipped_exon 8307389-8308665 (orient:+) max_ev_support = 1 # retained_exon 8307760-8307872 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 8307760-8307872 asmbl_12198 scaffold_14 + intron_skips_exon 8307389-8308665 asmbl_12201 // Retained and Spliced Intron # retained_intron 8415587-8415753 (orient:+) max_ev_support = 2 # spliced_intron 8415587-8415753 (orient:+) max_ev_support = 2 scaffold_14 + intron 8415587-8415753 asmbl_12222,asmbl_12225 scaffold_14 + retained_intron 8415587-8415753 asmbl_12223,asmbl_12224,asmbl_12226 // Retained and Spliced Intron # retained_intron 8416699-8416856 (orient:+) max_ev_support = 1 # spliced_intron 8416699-8416856 (orient:+) max_ev_support = 2 scaffold_14 + intron 8416699-8416856 asmbl_12222,asmbl_12226 scaffold_14 + retained_intron 8416699-8416856 asmbl_12223,asmbl_12225 // Retained and Spliced Intron # retained_intron 8589819-8590023 (orient:+) max_ev_support = 2 # spliced_intron 8589819-8590023 (orient:+) max_ev_support = 2 scaffold_14 + intron 8589819-8590023 asmbl_12234 scaffold_14 + retained_intron 8589819-8590023 asmbl_12235 // Retained and Spliced Intron # retained_intron 9475503-9475665 (orient:+) max_ev_support = 3 # spliced_intron 9475503-9475665 (orient:+) max_ev_support = 1 scaffold_14 + intron 9475503-9475665 asmbl_12267 scaffold_14 + retained_intron 9475503-9475665 asmbl_12265,asmbl_12266 // Retained and Spliced Intron # retained_intron 9475827-9475918 (orient:+) max_ev_support = 3 # spliced_intron 9475827-9475918 (orient:+) max_ev_support = 3 scaffold_14 + intron 9475827-9475918 asmbl_12266,asmbl_12267 scaffold_14 + retained_intron 9475827-9475918 asmbl_12265 // Retained and Spliced Intron # retained_intron 10479149-10479292 (orient:+) max_ev_support = 2 # spliced_intron 10479149-10479292 (orient:+) max_ev_support = 1 scaffold_14 + intron 10479149-10479292 asmbl_12305 scaffold_14 + retained_intron 10479149-10479292 asmbl_12302 // Retained and Spliced Intron # retained_intron 10479149-10479549 (orient:+) max_ev_support = 2 # spliced_intron 10479149-10479549 (orient:+) max_ev_support = 2 scaffold_14 + intron 10479149-10479549 asmbl_12303 scaffold_14 + retained_intron 10479149-10479549 asmbl_12302 // Retained and Spliced Intron # retained_intron 10717597-10717700 (orient:+) max_ev_support = 2 # spliced_intron 10717597-10717700 (orient:+) max_ev_support = 3 scaffold_14 + intron 10717597-10717700 asmbl_12324,asmbl_12326 scaffold_14 + retained_intron 10717597-10717700 asmbl_12325 // Retained and Spliced Intron # retained_intron 11513522-11513728 (orient:+) max_ev_support = 5 # spliced_intron 11513522-11513728 (orient:+) max_ev_support = 1 scaffold_14 + intron 11513522-11513728 asmbl_12364 scaffold_14 + retained_intron 11513522-11513728 asmbl_12363 // Retained and Spliced Intron # retained_intron 11550073-11550179 (orient:+) max_ev_support = 1 # spliced_intron 11550073-11550179 (orient:+) max_ev_support = 2 scaffold_14 + intron 11550073-11550179 asmbl_12368 scaffold_14 + retained_intron 11550073-11550179 asmbl_12369 // Retained and Spliced Intron # retained_intron 11944578-11944701 (orient:+) max_ev_support = 2 # spliced_intron 11944578-11944701 (orient:+) max_ev_support = 3 scaffold_14 + intron 11944578-11944701 asmbl_12388 scaffold_14 + retained_intron 11944578-11944701 asmbl_12389 // Retained and Spliced Intron # retained_intron 11945131-11945237 (orient:+) max_ev_support = 2 # spliced_intron 11945131-11945237 (orient:+) max_ev_support = 3 scaffold_14 + intron 11945131-11945237 asmbl_12388 scaffold_14 + retained_intron 11945131-11945237 asmbl_12390 // Retained and Spliced Intron # retained_intron 12014256-12014280 (orient:+) max_ev_support = 1 # spliced_intron 12014256-12014280 (orient:+) max_ev_support = 1 scaffold_14 + intron 12014256-12014280 asmbl_12395 scaffold_14 + retained_intron 12014256-12014280 asmbl_12396 // Retained and Spliced Intron # retained_intron 12154408-12154530 (orient:+) max_ev_support = 1 # spliced_intron 12154408-12154530 (orient:+) max_ev_support = 2 scaffold_14 + intron 12154408-12154530 asmbl_12397 scaffold_14 + retained_intron 12154408-12154530 asmbl_12399 // Retained and Spliced Intron # retained_intron 12351231-12351424 (orient:+) max_ev_support = 1 # spliced_intron 12351231-12351424 (orient:+) max_ev_support = 2 scaffold_14 + intron 12351231-12351424 asmbl_12406,asmbl_12407 scaffold_14 + retained_intron 12351231-12351424 asmbl_12408 // Retained and Spliced Intron # retained_intron 12351303-12351424 (orient:+) max_ev_support = 1 # spliced_intron 12351303-12351424 (orient:+) max_ev_support = 2 scaffold_14 + intron 12351303-12351424 asmbl_12405 scaffold_14 + retained_intron 12351303-12351424 asmbl_12408 // Exon Skipping and Retention # skipped_exon 12593720-12595920 (orient:+) max_ev_support = 2 # retained_exon 12594208-12595128 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 12594208-12595128 asmbl_12416 scaffold_14 + intron_skips_exon 12593720-12595920 asmbl_12414,asmbl_12415 // Retained and Spliced Intron # retained_intron 12593720-12594207 (orient:+) max_ev_support = 3 # spliced_intron 12593720-12594207 (orient:+) max_ev_support = 1 scaffold_14 + intron 12593720-12594207 asmbl_12416 scaffold_14 + retained_intron 12593720-12594207 asmbl_12417 // Retained and Spliced Intron # retained_intron 13217591-13219618 (orient:+) max_ev_support = 2 # spliced_intron 13217591-13219618 (orient:+) max_ev_support = 1 scaffold_14 + intron 13217591-13219618 asmbl_12442,asmbl_12443,asmbl_12444 scaffold_14 + retained_intron 13217591-13219618 asmbl_12441 // Retained and Spliced Intron # retained_intron 13223477-13223628 (orient:+) max_ev_support = 2 # spliced_intron 13223477-13223628 (orient:+) max_ev_support = 2 scaffold_14 + intron 13223477-13223628 asmbl_12445,asmbl_12450,asmbl_12451,asmbl_12453 scaffold_14 + retained_intron 13223477-13223628 asmbl_12447,asmbl_12449,asmbl_12452 // Retained and Spliced Intron # retained_intron 13223723-13223984 (orient:+) max_ev_support = 2 # spliced_intron 13223723-13223984 (orient:+) max_ev_support = 2 scaffold_14 + intron 13223723-13223984 asmbl_12445,asmbl_12447,asmbl_12450,asmbl_12451 scaffold_14 + retained_intron 13223723-13223984 asmbl_12449,asmbl_12452,asmbl_12453 // Retained and Spliced Intron # retained_intron 13882015-13882099 (orient:+) max_ev_support = 1 # spliced_intron 13882015-13882099 (orient:+) max_ev_support = 2 scaffold_14 + intron 13882015-13882099 asmbl_12492,asmbl_12494 scaffold_14 + retained_intron 13882015-13882099 asmbl_12493 // Retained and Spliced Intron # retained_intron 13899362-13899516 (orient:+) max_ev_support = 1 # spliced_intron 13899362-13899516 (orient:+) max_ev_support = 1 scaffold_14 + intron 13899362-13899516 asmbl_12497 scaffold_14 + retained_intron 13899362-13899516 asmbl_12499,asmbl_12500 // Retained and Spliced Intron # retained_intron 13897375-13897695 (orient:+) max_ev_support = 1 # spliced_intron 13897375-13897695 (orient:+) max_ev_support = 2 scaffold_14 + intron 13897375-13897695 asmbl_12496,asmbl_12497,asmbl_12499 scaffold_14 + retained_intron 13897375-13897695 asmbl_12501 // Retained and Spliced Intron # retained_intron 13897375-13897829 (orient:+) max_ev_support = 1 # spliced_intron 13897375-13897829 (orient:+) max_ev_support = 1 scaffold_14 + intron 13897375-13897829 asmbl_12498,asmbl_12500 scaffold_14 + retained_intron 13897375-13897829 asmbl_12501 // Retained and Spliced Intron # retained_intron 13897914-13898395 (orient:+) max_ev_support = 1 # spliced_intron 13897914-13898395 (orient:+) max_ev_support = 2 scaffold_14 + intron 13897914-13898395 asmbl_12496,asmbl_12497,asmbl_12498,asmbl_12499,asmbl_12500 scaffold_14 + retained_intron 13897914-13898395 asmbl_12501 // Exon Skipping and Retention # skipped_exon 14143576-14144727 (orient:+) max_ev_support = 1 # retained_exon 14144219-14144317 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14144219-14144317 asmbl_12509,asmbl_12512,asmbl_12515 scaffold_14 + intron_skips_exon 14143576-14144727 asmbl_12511,asmbl_12513,asmbl_12514 // Exon Skipping and Retention # skipped_exon 14147599-14148817 (orient:+) max_ev_support = 1 # retained_exon 14147748-14147954 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14147748-14147811,14147913-14147954 asmbl_12509,asmbl_12514 scaffold_14 + intron_skips_exon 14147599-14148817 asmbl_12512 // Exon Skipping and Retention # skipped_exon 14147812-14148982 (orient:+) max_ev_support = 1 # retained_exon 14147913-14147954 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 14147913-14147954 asmbl_12509,asmbl_12514 scaffold_14 + intron_skips_exon 14147812-14148982 asmbl_12511,asmbl_12515 // Exon Skipping and Retention # skipped_exon 14143142-14144218 (orient:+) max_ev_support = 2 # retained_exon 14143477-14143575 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14143477-14143575 asmbl_12511,asmbl_12513,asmbl_12514 scaffold_14 + intron_skips_exon 14143142-14144218 asmbl_12509,asmbl_12512,asmbl_12515 // Exon Skipping and Retention # skipped_exon 14147955-14149322 (orient:+) max_ev_support = 2 # retained_exon 14148983-14149024 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14148983-14149024 asmbl_12511,asmbl_12515 scaffold_14 + intron_skips_exon 14147955-14149322 asmbl_12509,asmbl_12514 // Exon Skipping and Retention # skipped_exon 14147955-14149322 (orient:+) max_ev_support = 2 # retained_exon 14148818-14149024 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14148818-14148881,14148983-14149024 asmbl_12512 scaffold_14 + intron_skips_exon 14147955-14149322 asmbl_12509,asmbl_12514 // Exon Skipping and Retention # skipped_exon 14386356-14387535 (orient:+) max_ev_support = 1 # retained_exon 14387178-14387238 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14387178-14387238 asmbl_12531 scaffold_14 + intron_skips_exon 14386356-14387535 asmbl_12532 // Exon Skipping and Retention # skipped_exon 14386053-14387177 (orient:+) max_ev_support = 1 # retained_exon 14386295-14386355 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 14386295-14386355 asmbl_12532 scaffold_14 + intron_skips_exon 14386053-14387177 asmbl_12531 // Retained and Spliced Intron # retained_intron 15247760-15247780 (orient:+) max_ev_support = 1 # spliced_intron 15247760-15247780 (orient:+) max_ev_support = 1 scaffold_14 + intron 15247760-15247780 asmbl_12568 scaffold_14 + retained_intron 15247760-15247780 asmbl_12567 // Retained and Spliced Intron # retained_intron 15464262-15464367 (orient:+) max_ev_support = 2 # spliced_intron 15464262-15464367 (orient:+) max_ev_support = 3 scaffold_14 + intron 15464262-15464367 asmbl_12584 scaffold_14 + retained_intron 15464262-15464367 asmbl_12585 // Retained and Spliced Intron # retained_intron 15468155-15468287 (orient:+) max_ev_support = 2 # spliced_intron 15468155-15468287 (orient:+) max_ev_support = 1 scaffold_14 + intron 15468155-15468287 asmbl_12587 scaffold_14 + retained_intron 15468155-15468287 asmbl_12586 // Retained and Spliced Intron # retained_intron 15469859-15470058 (orient:+) max_ev_support = 1 # spliced_intron 15469859-15470058 (orient:+) max_ev_support = 1 scaffold_14 + intron 15469859-15470058 asmbl_12589 scaffold_14 + retained_intron 15469859-15470058 asmbl_12588 // Retained and Spliced Intron # retained_intron 15470363-15470821 (orient:+) max_ev_support = 4 # spliced_intron 15470363-15470821 (orient:+) max_ev_support = 1 scaffold_14 + intron 15470363-15470821 asmbl_12589 scaffold_14 + retained_intron 15470363-15470821 asmbl_12588 // Exon Skipping and Retention # skipped_exon 15565811-15565918 (orient:+) max_ev_support = 1 # retained_exon 15565850-15565903 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15565850-15565903 asmbl_12606 scaffold_14 + intron_skips_exon 15565811-15565918 asmbl_12608 // Retained and Spliced Intron # retained_intron 15565823-15565849 (orient:+) max_ev_support = 1 # spliced_intron 15565823-15565849 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565823-15565849 asmbl_12606 scaffold_14 + retained_intron 15565823-15565849 asmbl_12607,asmbl_12609 // Retained and Spliced Intron # retained_intron 15565487-15565540 (orient:+) max_ev_support = 1 # spliced_intron 15565487-15565540 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565487-15565540 asmbl_12608 scaffold_14 + retained_intron 15565487-15565540 asmbl_12609 // Retained and Spliced Intron # retained_intron 15565493-15565735 (orient:+) max_ev_support = 1 # spliced_intron 15565493-15565735 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565493-15565735 asmbl_12607 scaffold_14 + retained_intron 15565493-15565735 asmbl_12609 // Retained and Spliced Intron # retained_intron 15565514-15565621 (orient:+) max_ev_support = 1 # spliced_intron 15565514-15565621 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565514-15565621 asmbl_12606 scaffold_14 + retained_intron 15565514-15565621 asmbl_12609 // Retained and Spliced Intron # retained_intron 15565811-15565918 (orient:+) max_ev_support = 1 # spliced_intron 15565811-15565918 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565811-15565918 asmbl_12608 scaffold_14 + retained_intron 15565811-15565918 asmbl_12609 // Retained and Spliced Intron # retained_intron 15565892-15565918 (orient:+) max_ev_support = 1 # spliced_intron 15565892-15565918 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565892-15565918 asmbl_12607 scaffold_14 + retained_intron 15565892-15565918 asmbl_12609 // Retained and Spliced Intron # retained_intron 15565904-15565930 (orient:+) max_ev_support = 1 # spliced_intron 15565904-15565930 (orient:+) max_ev_support = 1 scaffold_14 + intron 15565904-15565930 asmbl_12606 scaffold_14 + retained_intron 15565904-15565930 asmbl_12609 // Exon Skipping and Retention # skipped_exon 15584170-15585856 (orient:+) max_ev_support = 1 # retained_exon 15585637-15585678 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15585637-15585678 asmbl_12611 scaffold_14 + intron_skips_exon 15584170-15585856 asmbl_12612 // Exon Skipping and Retention # skipped_exon 15585029-15586492 (orient:+) max_ev_support = 1 # retained_exon 15585637-15585898 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15585637-15585678,15585857-15585898 asmbl_12611 scaffold_14 + intron_skips_exon 15585029-15586492 asmbl_12613,asmbl_12614 // Exon Skipping and Retention # skipped_exon 15584170-15585636 (orient:+) max_ev_support = 1 # retained_exon 15584987-15585028 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584987-15585028 asmbl_12613 scaffold_14 + intron_skips_exon 15584170-15585636 asmbl_12611 // Exon Skipping and Retention # skipped_exon 15584170-15584986 (orient:+) max_ev_support = 1 # retained_exon 15584767-15584808 (orient:+) max_ev_support = 1 scaffold_14 + retained_exons 15584767-15584808 asmbl_12614 scaffold_14 + intron_skips_exon 15584170-15584986 asmbl_12613 // Retained and Spliced Intron # retained_intron 15638709-15638796 (orient:+) max_ev_support = 1 # spliced_intron 15638709-15638796 (orient:+) max_ev_support = 3 scaffold_14 + intron 15638709-15638796 asmbl_12616 scaffold_14 + retained_intron 15638709-15638796 asmbl_12617 // Exon Skipping and Retention # skipped_exon 16030712-16033484 (orient:+) max_ev_support = 1 # retained_exon 16031969-16032016 (orient:+) max_ev_support = 2 scaffold_14 + retained_exons 16031969-16032016 asmbl_12640 scaffold_14 + intron_skips_exon 16030712-16033484 asmbl_12643 // Retained and Spliced Intron # retained_intron 148849-149079 (orient:-) max_ev_support = 3 # spliced_intron 148849-149079 (orient:-) max_ev_support = 1 scaffold_14 - intron 148849-149079 asmbl_12762 scaffold_14 - retained_intron 148849-149079 asmbl_12757,asmbl_12759,asmbl_12761 // Retained and Spliced Intron # retained_intron 151364-151716 (orient:-) max_ev_support = 2 # spliced_intron 151364-151716 (orient:-) max_ev_support = 1 scaffold_14 - intron 151364-151716 asmbl_12761,asmbl_12764,asmbl_12765 scaffold_14 - retained_intron 151364-151716 asmbl_12760,asmbl_12763 // Retained and Spliced Intron # retained_intron 151364-151904 (orient:-) max_ev_support = 2 # spliced_intron 151364-151904 (orient:-) max_ev_support = 3 scaffold_14 - intron 151364-151904 asmbl_12758,asmbl_12759,asmbl_12762 scaffold_14 - retained_intron 151364-151904 asmbl_12760,asmbl_12763 // Retained and Spliced Intron # retained_intron 151803-151904 (orient:-) max_ev_support = 2 # spliced_intron 151803-151904 (orient:-) max_ev_support = 1 scaffold_14 - intron 151803-151904 asmbl_12761,asmbl_12765 scaffold_14 - retained_intron 151803-151904 asmbl_12760,asmbl_12763,asmbl_12764 // Exon Skipping and Retention # skipped_exon 151364-151904 (orient:-) max_ev_support = 3 # retained_exon 151717-151802 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 151717-151802 asmbl_12761,asmbl_12765 scaffold_14 - intron_skips_exon 151364-151904 asmbl_12758,asmbl_12759,asmbl_12762 // Retained and Spliced Intron # retained_intron 150868-151276 (orient:-) max_ev_support = 1 # spliced_intron 150868-151276 (orient:-) max_ev_support = 3 scaffold_14 - intron 150868-151276 asmbl_12758,asmbl_12759,asmbl_12760,asmbl_12761,asmbl_12762 scaffold_14 - retained_intron 150868-151276 asmbl_12763,asmbl_12764,asmbl_12765 // Retained and Spliced Intron # retained_intron 176800-176929 (orient:-) max_ev_support = 1 # spliced_intron 176800-176929 (orient:-) max_ev_support = 2 scaffold_14 - intron 176800-176929 asmbl_12767,asmbl_12768 scaffold_14 - retained_intron 176800-176929 asmbl_12769 // Exon Skipping and Retention # skipped_exon 209003-210779 (orient:-) max_ev_support = 3 # retained_exon 209954-210056 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 209954-210056 asmbl_12778 scaffold_14 - intron_skips_exon 209003-210779 asmbl_12779 // Retained and Spliced Intron # retained_intron 208851-208933 (orient:-) max_ev_support = 2 # spliced_intron 208851-208933 (orient:-) max_ev_support = 3 scaffold_14 - intron 208851-208933 asmbl_12776,asmbl_12777,asmbl_12778,asmbl_12779 scaffold_14 - retained_intron 208851-208933 asmbl_12781 // Retained and Spliced Intron # retained_intron 217693-217891 (orient:-) max_ev_support = 2 # spliced_intron 217693-217891 (orient:-) max_ev_support = 2 scaffold_14 - intron 217693-217891 asmbl_12788 scaffold_14 - retained_intron 217693-217891 asmbl_12786,asmbl_12787,asmbl_12789,asmbl_12790 // Retained and Spliced Intron # retained_intron 218317-218775 (orient:-) max_ev_support = 2 # spliced_intron 218317-218775 (orient:-) max_ev_support = 2 scaffold_14 - intron 218317-218775 asmbl_12787,asmbl_12788 scaffold_14 - retained_intron 218317-218775 asmbl_12786,asmbl_12789,asmbl_12790 // Exon Skipping and Retention # skipped_exon 219174-220726 (orient:-) max_ev_support = 2 # retained_exon 219872-220576 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 219872-220576 asmbl_12786 scaffold_14 - intron_skips_exon 219174-220726 asmbl_12787,asmbl_12788,asmbl_12789,asmbl_12790 // Retained and Spliced Intron # retained_intron 218091-218231 (orient:-) max_ev_support = 1 # spliced_intron 218091-218231 (orient:-) max_ev_support = 2 scaffold_14 - intron 218091-218231 asmbl_12786,asmbl_12787,asmbl_12788,asmbl_12789 scaffold_14 - retained_intron 218091-218231 asmbl_12790 // Exon Skipping and Retention # skipped_exon 658583-660368 (orient:-) max_ev_support = 2 # retained_exon 659132-659204 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 659132-659204 asmbl_12820 scaffold_14 - intron_skips_exon 658583-660368 asmbl_12822 // Retained and Spliced Intron # retained_intron 1130983-1131079 (orient:-) max_ev_support = 2 # spliced_intron 1130983-1131079 (orient:-) max_ev_support = 3 scaffold_14 - intron 1130983-1131079 asmbl_12841,asmbl_12842 scaffold_14 - retained_intron 1130983-1131079 asmbl_12843 // Exon Skipping and Retention # skipped_exon 1375462-1376687 (orient:-) max_ev_support = 1 # retained_exon 1376332-1376480 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 1376332-1376480 asmbl_12855,asmbl_12856,asmbl_12858,asmbl_12859 scaffold_14 - intron_skips_exon 1375462-1376687 asmbl_12857 // Retained and Spliced Intron # retained_intron 1590384-1590520 (orient:-) max_ev_support = 1 # spliced_intron 1590384-1590520 (orient:-) max_ev_support = 1 scaffold_14 - intron 1590384-1590520 asmbl_12878 scaffold_14 - retained_intron 1590384-1590520 asmbl_12876 // Exon Skipping and Retention # skipped_exon 1590384-1591852 (orient:-) max_ev_support = 2 # retained_exon 1590521-1590858 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 1590521-1590858 asmbl_12878 scaffold_14 - intron_skips_exon 1590384-1591852 asmbl_12872,asmbl_12873,asmbl_12874 // Exon Skipping and Retention # skipped_exon 1590407-1591852 (orient:-) max_ev_support = 1 # retained_exon 1590521-1590858 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 1590521-1590858 asmbl_12878 scaffold_14 - intron_skips_exon 1590407-1591852 asmbl_12877 // Retained and Spliced Intron # retained_intron 1602723-1602820 (orient:-) max_ev_support = 3 # spliced_intron 1602723-1602820 (orient:-) max_ev_support = 3 scaffold_14 - intron 1602723-1602820 asmbl_12880 scaffold_14 - retained_intron 1602723-1602820 asmbl_12881 // Retained and Spliced Intron # retained_intron 1714923-1715056 (orient:-) max_ev_support = 2 # spliced_intron 1714923-1715056 (orient:-) max_ev_support = 3 scaffold_14 - intron 1714923-1715056 asmbl_12890 scaffold_14 - retained_intron 1714923-1715056 asmbl_12891 // Retained and Spliced Intron # retained_intron 1715156-1715260 (orient:-) max_ev_support = 2 # spliced_intron 1715156-1715260 (orient:-) max_ev_support = 3 scaffold_14 - intron 1715156-1715260 asmbl_12890 scaffold_14 - retained_intron 1715156-1715260 asmbl_12891 // Retained and Spliced Intron # retained_intron 1715347-1715448 (orient:-) max_ev_support = 2 # spliced_intron 1715347-1715448 (orient:-) max_ev_support = 3 scaffold_14 - intron 1715347-1715448 asmbl_12890 scaffold_14 - retained_intron 1715347-1715448 asmbl_12891 // Retained and Spliced Intron # retained_intron 2128876-2129082 (orient:-) max_ev_support = 2 # spliced_intron 2128876-2129082 (orient:-) max_ev_support = 3 scaffold_14 - intron 2128876-2129082 asmbl_12896,asmbl_12898,asmbl_12901 scaffold_14 - retained_intron 2128876-2129082 asmbl_12899 // Retained and Spliced Intron # retained_intron 2122954-2123146 (orient:-) max_ev_support = 1 # spliced_intron 2122954-2123146 (orient:-) max_ev_support = 3 scaffold_14 - intron 2122954-2123146 asmbl_12896,asmbl_12897,asmbl_12899 scaffold_14 - retained_intron 2122954-2123146 asmbl_12901 // Exon Skipping and Retention # skipped_exon 2247236-2247917 (orient:-) max_ev_support = 2 # retained_exon 2247331-2247578 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 2247331-2247578 asmbl_12903,asmbl_12905 scaffold_14 - intron_skips_exon 2247236-2247917 asmbl_12904,asmbl_12906 // Retained and Spliced Intron # retained_intron 2263195-2263335 (orient:-) max_ev_support = 1 # spliced_intron 2263195-2263335 (orient:-) max_ev_support = 2 scaffold_14 - intron 2263195-2263335 asmbl_12908 scaffold_14 - retained_intron 2263195-2263335 asmbl_12909 // Retained and Spliced Intron # retained_intron 2263794-2264034 (orient:-) max_ev_support = 1 # spliced_intron 2263794-2264034 (orient:-) max_ev_support = 2 scaffold_14 - intron 2263794-2264034 asmbl_12908 scaffold_14 - retained_intron 2263794-2264034 asmbl_12909 // Retained and Spliced Intron # retained_intron 2374225-2374349 (orient:-) max_ev_support = 1 # spliced_intron 2374225-2374349 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374225-2374349 asmbl_12916,asmbl_12918,asmbl_12919,asmbl_12920 scaffold_14 - retained_intron 2374225-2374349 asmbl_12913,asmbl_12917,asmbl_12921,asmbl_12922,asmbl_12923 // Retained and Spliced Intron # retained_intron 2374520-2375412 (orient:-) max_ev_support = 2 # spliced_intron 2374520-2375412 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374520-2375412 asmbl_12917,asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923 scaffold_14 - retained_intron 2374520-2375412 asmbl_12913,asmbl_12914,asmbl_12921,asmbl_12924 // Retained and Spliced Intron # retained_intron 2374520-2375890 (orient:-) max_ev_support = 2 # spliced_intron 2374520-2375890 (orient:-) max_ev_support = 1 scaffold_14 - intron 2374520-2375890 asmbl_12916,asmbl_12922 scaffold_14 - retained_intron 2374520-2375890 asmbl_12913,asmbl_12914,asmbl_12921 // Retained and Spliced Intron # retained_intron 2375443-2375890 (orient:-) max_ev_support = 2 # spliced_intron 2375443-2375890 (orient:-) max_ev_support = 1 scaffold_14 - intron 2375443-2375890 asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923,asmbl_12924 scaffold_14 - retained_intron 2375443-2375890 asmbl_12913,asmbl_12914,asmbl_12917,asmbl_12921 // Retained and Spliced Intron # retained_intron 2376089-2376796 (orient:-) max_ev_support = 2 # spliced_intron 2376089-2376796 (orient:-) max_ev_support = 2 scaffold_14 - intron 2376089-2376796 asmbl_12913,asmbl_12918,asmbl_12920,asmbl_12922 scaffold_14 - retained_intron 2376089-2376796 asmbl_12914,asmbl_12916,asmbl_12917,asmbl_12919,asmbl_12921,asmbl_12923,asmbl_12924 // Exon Skipping and Retention # skipped_exon 2374520-2375890 (orient:-) max_ev_support = 1 # retained_exon 2375413-2375442 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 2375413-2375442 asmbl_12918,asmbl_12919,asmbl_12920,asmbl_12923 scaffold_14 - intron_skips_exon 2374520-2375890 asmbl_12916,asmbl_12922 // Retained and Spliced Intron # retained_intron 2373729-2374187 (orient:-) max_ev_support = 1 # spliced_intron 2373729-2374187 (orient:-) max_ev_support = 1 scaffold_14 - intron 2373729-2374187 asmbl_12913,asmbl_12916,asmbl_12917,asmbl_12918,asmbl_12919,asmbl_12920 scaffold_14 - retained_intron 2373729-2374187 asmbl_12921,asmbl_12922 // Retained and Spliced Intron # retained_intron 2600144-2600258 (orient:-) max_ev_support = 3 # spliced_intron 2600144-2600258 (orient:-) max_ev_support = 1 scaffold_14 - intron 2600144-2600258 asmbl_12948 scaffold_14 - retained_intron 2600144-2600258 asmbl_12947 // Retained and Spliced Intron # retained_intron 2886580-2886644 (orient:-) max_ev_support = 2 # spliced_intron 2886580-2886644 (orient:-) max_ev_support = 3 scaffold_14 - intron 2886580-2886644 asmbl_12962 scaffold_14 - retained_intron 2886580-2886644 asmbl_12961,asmbl_12963,asmbl_12964 // Retained and Spliced Intron # retained_intron 2919342-2919421 (orient:-) max_ev_support = 1 # spliced_intron 2919342-2919421 (orient:-) max_ev_support = 2 scaffold_14 - intron 2919342-2919421 asmbl_12971 scaffold_14 - retained_intron 2919342-2919421 asmbl_12972 // Retained and Spliced Intron # retained_intron 2940933-2941376 (orient:-) max_ev_support = 2 # spliced_intron 2940933-2941376 (orient:-) max_ev_support = 2 scaffold_14 - intron 2940933-2941376 asmbl_12974,asmbl_12975 scaffold_14 - retained_intron 2940933-2941376 asmbl_12973,asmbl_12976 // Exon Skipping and Retention # skipped_exon 3172564-3173432 (orient:-) max_ev_support = 2 # retained_exon 3173132-3173282 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3173132-3173282 asmbl_12978 scaffold_14 - intron_skips_exon 3172564-3173432 asmbl_12979 // Retained and Spliced Intron # retained_intron 3364505-3364903 (orient:-) max_ev_support = 3 # spliced_intron 3364505-3364903 (orient:-) max_ev_support = 2 scaffold_14 - intron 3364505-3364903 asmbl_12985 scaffold_14 - retained_intron 3364505-3364903 asmbl_12984 // Exon Skipping and Retention # skipped_exon 3550295-3551903 (orient:-) max_ev_support = 2 # retained_exon 3551269-3551337 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3551269-3551337 asmbl_13002,asmbl_13004 scaffold_14 - intron_skips_exon 3550295-3551903 asmbl_13003 // Exon Skipping and Retention # skipped_exon 3551338-3552180 (orient:-) max_ev_support = 1 # retained_exon 3551904-3551989 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 3551904-3551989 asmbl_13002,asmbl_13003 scaffold_14 - intron_skips_exon 3551338-3552180 asmbl_13004 // Exon Skipping and Retention # skipped_exon 4112821-4113937 (orient:-) max_ev_support = 3 # retained_exon 4113488-4113544 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 4113488-4113544 asmbl_13016 scaffold_14 - intron_skips_exon 4112821-4113937 asmbl_13015 // Retained and Spliced Intron # retained_intron 4699179-4699324 (orient:-) max_ev_support = 3 # spliced_intron 4699179-4699324 (orient:-) max_ev_support = 1 scaffold_14 - intron 4699179-4699324 asmbl_13045 scaffold_14 - retained_intron 4699179-4699324 asmbl_13044 // Exon Skipping and Retention # skipped_exon 4781390-4782208 (orient:-) max_ev_support = 1 # retained_exon 4781520-4781580 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 4781520-4781580 asmbl_13051,asmbl_13052,asmbl_13053,asmbl_13054 scaffold_14 - intron_skips_exon 4781390-4782208 asmbl_13055 // Retained and Spliced Intron # retained_intron 4780275-4781266 (orient:-) max_ev_support = 1 # spliced_intron 4780275-4781266 (orient:-) max_ev_support = 2 scaffold_14 - intron 4780275-4781266 asmbl_13051,asmbl_13054 scaffold_14 - retained_intron 4780275-4781266 asmbl_13052,asmbl_13053,asmbl_13055 // Retained and Spliced Intron # retained_intron 4782236-4782441 (orient:-) max_ev_support = 1 # spliced_intron 4782236-4782441 (orient:-) max_ev_support = 2 scaffold_14 - intron 4782236-4782441 asmbl_13051,asmbl_13052,asmbl_13055 scaffold_14 - retained_intron 4782236-4782441 asmbl_13053,asmbl_13054 // Retained and Spliced Intron # retained_intron 5790758-5790843 (orient:-) max_ev_support = 2 # spliced_intron 5790758-5790843 (orient:-) max_ev_support = 2 scaffold_14 - intron 5790758-5790843 asmbl_13074,asmbl_13076 scaffold_14 - retained_intron 5790758-5790843 asmbl_13075 // Retained and Spliced Intron # retained_intron 5790911-5791036 (orient:-) max_ev_support = 1 # spliced_intron 5790911-5791036 (orient:-) max_ev_support = 2 scaffold_14 - intron 5790911-5791036 asmbl_13074,asmbl_13077 scaffold_14 - retained_intron 5790911-5791036 asmbl_13076 // Retained and Spliced Intron # retained_intron 5791100-5791212 (orient:-) max_ev_support = 2 # spliced_intron 5791100-5791212 (orient:-) max_ev_support = 2 scaffold_14 - intron 5791100-5791212 asmbl_13074 scaffold_14 - retained_intron 5791100-5791212 asmbl_13077 // Retained and Spliced Intron # retained_intron 6427617-6427975 (orient:-) max_ev_support = 1 # spliced_intron 6427617-6427975 (orient:-) max_ev_support = 2 scaffold_14 - intron 6427617-6427975 asmbl_13110 scaffold_14 - retained_intron 6427617-6427975 asmbl_13111 // Exon Skipping and Retention # skipped_exon 6435038-6437524 (orient:-) max_ev_support = 2 # retained_exon 6437202-6437324 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 6437202-6437324 asmbl_13113 scaffold_14 - intron_skips_exon 6435038-6437524 asmbl_13114 // Exon Skipping and Retention # skipped_exon 6449782-6450530 (orient:-) max_ev_support = 1 # retained_exon 6449925-6450069 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 6449925-6450069 asmbl_13116 scaffold_14 - intron_skips_exon 6449782-6450530 asmbl_13117 // Retained and Spliced Intron # retained_intron 6553331-6553641 (orient:-) max_ev_support = 1 # spliced_intron 6553331-6553641 (orient:-) max_ev_support = 1 scaffold_14 - intron 6553331-6553641 asmbl_13123 scaffold_14 - retained_intron 6553331-6553641 asmbl_13122 // Retained and Spliced Intron # retained_intron 6645283-6645363 (orient:-) max_ev_support = 1 # spliced_intron 6645283-6645363 (orient:-) max_ev_support = 1 scaffold_14 - intron 6645283-6645363 asmbl_13125,asmbl_13126 scaffold_14 - retained_intron 6645283-6645363 asmbl_13124 // Retained and Spliced Intron # retained_intron 6645463-6645615 (orient:-) max_ev_support = 1 # spliced_intron 6645463-6645615 (orient:-) max_ev_support = 1 scaffold_14 - intron 6645463-6645615 asmbl_13125,asmbl_13126 scaffold_14 - retained_intron 6645463-6645615 asmbl_13124 // Exon Skipping and Retention # skipped_exon 6646360-6648368 (orient:-) max_ev_support = 1 # retained_exon 6646625-6647230 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 6646625-6646732,6646888-6646992,6647132-6647230 asmbl_13126 scaffold_14 - intron_skips_exon 6646360-6648368 asmbl_13125 // Retained and Spliced Intron # retained_intron 6644100-6644388 (orient:-) max_ev_support = 1 # spliced_intron 6644100-6644388 (orient:-) max_ev_support = 1 scaffold_14 - intron 6644100-6644388 asmbl_13124,asmbl_13125,asmbl_13126 scaffold_14 - retained_intron 6644100-6644388 asmbl_13129 // Retained and Spliced Intron # retained_intron 6987427-6987843 (orient:-) max_ev_support = 1 # spliced_intron 6987427-6987843 (orient:-) max_ev_support = 2 scaffold_14 - intron 6987427-6987843 asmbl_13155 scaffold_14 - retained_intron 6987427-6987843 asmbl_13156 // Retained and Spliced Intron # retained_intron 7436268-7436358 (orient:-) max_ev_support = 2 # spliced_intron 7436268-7436358 (orient:-) max_ev_support = 2 scaffold_14 - intron 7436268-7436358 asmbl_13183,asmbl_13184,asmbl_13185 scaffold_14 - retained_intron 7436268-7436358 asmbl_13182 // Retained and Spliced Intron # retained_intron 7444437-7444909 (orient:-) max_ev_support = 3 # spliced_intron 7444437-7444909 (orient:-) max_ev_support = 2 scaffold_14 - intron 7444437-7444909 asmbl_13187,asmbl_13188 scaffold_14 - retained_intron 7444437-7444909 asmbl_13186 // Exon Skipping and Retention # skipped_exon 7460431-7460908 (orient:-) max_ev_support = 1 # retained_exon 7460506-7460602 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 7460506-7460602 asmbl_13194 scaffold_14 - intron_skips_exon 7460431-7460908 asmbl_13195 // Retained and Spliced Intron # retained_intron 7480485-7480705 (orient:-) max_ev_support = 4 # spliced_intron 7480485-7480705 (orient:-) max_ev_support = 1 scaffold_14 - intron 7480485-7480705 asmbl_13199 scaffold_14 - retained_intron 7480485-7480705 asmbl_13196,asmbl_13197 // Retained and Spliced Intron # retained_intron 7508898-7509085 (orient:-) max_ev_support = 2 # spliced_intron 7508898-7509085 (orient:-) max_ev_support = 2 scaffold_14 - intron 7508898-7509085 asmbl_13203,asmbl_13205 scaffold_14 - retained_intron 7508898-7509085 asmbl_13204,asmbl_13206 // Retained and Spliced Intron # retained_intron 7506677-7507029 (orient:-) max_ev_support = 1 # spliced_intron 7506677-7507029 (orient:-) max_ev_support = 2 scaffold_14 - intron 7506677-7507029 asmbl_13202,asmbl_13203,asmbl_13204,asmbl_13206 scaffold_14 - retained_intron 7506677-7507029 asmbl_13205,asmbl_13207 // Exon Skipping and Retention # skipped_exon 7564739-7566078 (orient:-) max_ev_support = 2 # retained_exon 7565593-7565729 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 7565593-7565729 asmbl_13212 scaffold_14 - intron_skips_exon 7564739-7566078 asmbl_13211 // Exon Skipping and Retention # skipped_exon 8215090-8216517 (orient:-) max_ev_support = 2 # retained_exon 8216075-8216119 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 8216075-8216119 asmbl_13238 scaffold_14 - intron_skips_exon 8215090-8216517 asmbl_13237,asmbl_13239,asmbl_13241 // Retained and Spliced Intron # retained_intron 8213726-8214121 (orient:-) max_ev_support = 2 # spliced_intron 8213726-8214121 (orient:-) max_ev_support = 2 scaffold_14 - intron 8213726-8214121 asmbl_13237,asmbl_13238,asmbl_13240,asmbl_13241,asmbl_13242 scaffold_14 - retained_intron 8213726-8214121 asmbl_13239 // Retained and Spliced Intron # retained_intron 8212830-8213288 (orient:-) max_ev_support = 1 # spliced_intron 8212830-8213288 (orient:-) max_ev_support = 2 scaffold_14 - intron 8212830-8213288 asmbl_13237,asmbl_13238,asmbl_13240,asmbl_13242 scaffold_14 - retained_intron 8212830-8213288 asmbl_13241 // Exon Skipping and Retention # skipped_exon 8231446-8232235 (orient:-) max_ev_support = 2 # retained_exon 8231791-8231817 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 8231791-8231817 asmbl_13247 scaffold_14 - intron_skips_exon 8231446-8232235 asmbl_13245,asmbl_13246 // Retained and Spliced Intron # retained_intron 8295304-8295419 (orient:-) max_ev_support = 2 # spliced_intron 8295304-8295419 (orient:-) max_ev_support = 1 scaffold_14 - intron 8295304-8295419 asmbl_13267 scaffold_14 - retained_intron 8295304-8295419 asmbl_13265,asmbl_13266 // Retained and Spliced Intron # retained_intron 8330057-8330148 (orient:-) max_ev_support = 1 # spliced_intron 8330057-8330148 (orient:-) max_ev_support = 2 scaffold_14 - intron 8330057-8330148 asmbl_13269 scaffold_14 - retained_intron 8330057-8330148 asmbl_13270 // Retained and Spliced Intron # retained_intron 8338998-8339359 (orient:-) max_ev_support = 1 # spliced_intron 8338998-8339359 (orient:-) max_ev_support = 2 scaffold_14 - intron 8338998-8339359 asmbl_13271 scaffold_14 - retained_intron 8338998-8339359 asmbl_13272 // Retained and Spliced Intron # retained_intron 8371335-8371512 (orient:-) max_ev_support = 1 # spliced_intron 8371335-8371512 (orient:-) max_ev_support = 3 scaffold_14 - intron 8371335-8371512 asmbl_13279 scaffold_14 - retained_intron 8371335-8371512 asmbl_13280 // Retained and Spliced Intron # retained_intron 8405603-8405746 (orient:-) max_ev_support = 2 # spliced_intron 8405603-8405746 (orient:-) max_ev_support = 1 scaffold_14 - intron 8405603-8405746 asmbl_13291,asmbl_13292 scaffold_14 - retained_intron 8405603-8405746 asmbl_13290,asmbl_13293 // Retained and Spliced Intron # retained_intron 8452011-8452120 (orient:-) max_ev_support = 1 # spliced_intron 8452011-8452120 (orient:-) max_ev_support = 1 scaffold_14 - intron 8452011-8452120 asmbl_13299 scaffold_14 - retained_intron 8452011-8452120 asmbl_13298 // Exon Skipping and Retention # skipped_exon 8451583-8452120 (orient:-) max_ev_support = 1 # retained_exon 8451918-8452010 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 8451918-8452010 asmbl_13299 scaffold_14 - intron_skips_exon 8451583-8452120 asmbl_13300 // Retained and Spliced Intron # retained_intron 8610516-8610600 (orient:-) max_ev_support = 2 # spliced_intron 8610516-8610600 (orient:-) max_ev_support = 2 scaffold_14 - intron 8610516-8610600 asmbl_13308,asmbl_13310 scaffold_14 - retained_intron 8610516-8610600 asmbl_13309 // Retained and Spliced Intron # retained_intron 8651388-8651714 (orient:-) max_ev_support = 1 # spliced_intron 8651388-8651714 (orient:-) max_ev_support = 2 scaffold_14 - intron 8651388-8651714 asmbl_13314 scaffold_14 - retained_intron 8651388-8651714 asmbl_13315 // Exon Skipping and Retention # skipped_exon 8695572-8696048 (orient:-) max_ev_support = 1 # retained_exon 8695771-8695878 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 8695771-8695878 asmbl_13318,asmbl_13321 scaffold_14 - intron_skips_exon 8695572-8696048 asmbl_13319,asmbl_13322 // Retained and Spliced Intron # retained_intron 8695572-8695770 (orient:-) max_ev_support = 1 # spliced_intron 8695572-8695770 (orient:-) max_ev_support = 2 scaffold_14 - intron 8695572-8695770 asmbl_13318,asmbl_13321 scaffold_14 - retained_intron 8695572-8695770 asmbl_13320 // Retained and Spliced Intron # retained_intron 8694420-8694707 (orient:-) max_ev_support = 1 # spliced_intron 8694420-8694707 (orient:-) max_ev_support = 2 scaffold_14 - intron 8694420-8694707 asmbl_13318,asmbl_13319,asmbl_13320 scaffold_14 - retained_intron 8694420-8694707 asmbl_13321,asmbl_13322 // Retained and Spliced Intron # retained_intron 8755233-8755448 (orient:-) max_ev_support = 1 # spliced_intron 8755233-8755448 (orient:-) max_ev_support = 1 scaffold_14 - intron 8755233-8755448 asmbl_13326 scaffold_14 - retained_intron 8755233-8755448 asmbl_13325,asmbl_13327 // Retained and Spliced Intron # retained_intron 9067614-9067868 (orient:-) max_ev_support = 2 # spliced_intron 9067614-9067868 (orient:-) max_ev_support = 1 scaffold_14 - intron 9067614-9067868 asmbl_13333 scaffold_14 - retained_intron 9067614-9067868 asmbl_13332 // Exon Skipping and Retention # skipped_exon 9271820-9273885 (orient:-) max_ev_support = 1 # retained_exon 9272349-9272763 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9272349-9272558,9272680-9272763 asmbl_13342 scaffold_14 - intron_skips_exon 9271820-9273885 asmbl_13344 // Exon Skipping and Retention # skipped_exon 9272764-9273885 (orient:-) max_ev_support = 1 # retained_exon 9273524-9273610 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9273524-9273610 asmbl_13343,asmbl_13345,asmbl_13348 scaffold_14 - intron_skips_exon 9272764-9273885 asmbl_13342 // Retained and Spliced Intron # retained_intron 9272764-9273523 (orient:-) max_ev_support = 1 # spliced_intron 9272764-9273523 (orient:-) max_ev_support = 2 scaffold_14 - intron 9272764-9273523 asmbl_13343,asmbl_13345,asmbl_13346,asmbl_13348 scaffold_14 - retained_intron 9272764-9273523 asmbl_13347,asmbl_13349 // Retained and Spliced Intron # retained_intron 9272764-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9272764-9273885 (orient:-) max_ev_support = 1 scaffold_14 - intron 9272764-9273885 asmbl_13342 scaffold_14 - retained_intron 9272764-9273885 asmbl_13347,asmbl_13349 // Retained and Spliced Intron # retained_intron 9273608-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9273608-9273885 (orient:-) max_ev_support = 1 scaffold_14 - intron 9273608-9273885 asmbl_13346 scaffold_14 - retained_intron 9273608-9273885 asmbl_13347,asmbl_13349 // Retained and Spliced Intron # retained_intron 9273611-9273885 (orient:-) max_ev_support = 1 # spliced_intron 9273611-9273885 (orient:-) max_ev_support = 2 scaffold_14 - intron 9273611-9273885 asmbl_13343,asmbl_13345,asmbl_13348 scaffold_14 - retained_intron 9273611-9273885 asmbl_13347,asmbl_13349 // Retained and Spliced Intron # retained_intron 9272559-9272679 (orient:-) max_ev_support = 1 # spliced_intron 9272559-9272679 (orient:-) max_ev_support = 2 scaffold_14 - intron 9272559-9272679 asmbl_13342,asmbl_13343,asmbl_13345,asmbl_13346,asmbl_13347,asmbl_13348 scaffold_14 - retained_intron 9272559-9272679 asmbl_13349 // Exon Skipping and Retention # skipped_exon 9287370-9288497 (orient:-) max_ev_support = 2 # retained_exon 9287989-9288015 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 9287989-9288015 asmbl_13352,asmbl_13353,asmbl_13355,asmbl_13357,asmbl_13358 scaffold_14 - intron_skips_exon 9287370-9288497 asmbl_13354,asmbl_13356 // Retained and Spliced Intron # retained_intron 9506808-9506827 (orient:-) max_ev_support = 1 # spliced_intron 9506808-9506827 (orient:-) max_ev_support = 2 scaffold_14 - intron 9506808-9506827 asmbl_13365 scaffold_14 - retained_intron 9506808-9506827 asmbl_13366 // Exon Skipping and Retention # skipped_exon 10017369-10019893 (orient:-) max_ev_support = 2 # retained_exon 10019033-10019103 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 10019033-10019103 asmbl_13388 scaffold_14 - intron_skips_exon 10017369-10019893 asmbl_13387 // Exon Skipping and Retention # skipped_exon 10371561-10372201 (orient:-) max_ev_support = 2 # retained_exon 10371698-10371735 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 10371698-10371735 asmbl_13401 scaffold_14 - intron_skips_exon 10371561-10372201 asmbl_13400 // Retained and Spliced Intron # retained_intron 10410634-10411783 (orient:-) max_ev_support = 5 # spliced_intron 10410634-10411783 (orient:-) max_ev_support = 1 scaffold_14 - intron 10410634-10411783 asmbl_13403 scaffold_14 - retained_intron 10410634-10411783 asmbl_13402,asmbl_13404 // Exon Skipping and Retention # skipped_exon 10424625-10426296 (orient:-) max_ev_support = 1 # retained_exon 10425045-10425086 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 10425045-10425086 asmbl_13405 scaffold_14 - intron_skips_exon 10424625-10426296 asmbl_13406 // Exon Skipping and Retention # skipped_exon 11139409-11139772 (orient:-) max_ev_support = 2 # retained_exon 11139487-11139590 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11139487-11139590 asmbl_13430 scaffold_14 - intron_skips_exon 11139409-11139772 asmbl_13429 // Retained and Spliced Intron # retained_intron 11139409-11139486 (orient:-) max_ev_support = 1 # spliced_intron 11139409-11139486 (orient:-) max_ev_support = 2 scaffold_14 - intron 11139409-11139486 asmbl_13430 scaffold_14 - retained_intron 11139409-11139486 asmbl_13433 // Exon Skipping and Retention # skipped_exon 11220457-11221809 (orient:-) max_ev_support = 2 # retained_exon 11221099-11221501 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 11221099-11221128,11221439-11221501 asmbl_13440 scaffold_14 - intron_skips_exon 11220457-11221809 asmbl_13439 // Retained and Spliced Intron # retained_intron 11391513-11391625 (orient:-) max_ev_support = 2 # spliced_intron 11391513-11391625 (orient:-) max_ev_support = 3 scaffold_14 - intron 11391513-11391625 asmbl_13460 scaffold_14 - retained_intron 11391513-11391625 asmbl_13461,asmbl_13462,asmbl_13464,asmbl_13465 // Retained and Spliced Intron # retained_intron 11386909-11387002 (orient:-) max_ev_support = 1 # spliced_intron 11386909-11387002 (orient:-) max_ev_support = 2 scaffold_14 - intron 11386909-11387002 asmbl_13460,asmbl_13462,asmbl_13464 scaffold_14 - retained_intron 11386909-11387002 asmbl_13463 // Retained and Spliced Intron # retained_intron 11386935-11387002 (orient:-) max_ev_support = 1 # spliced_intron 11386935-11387002 (orient:-) max_ev_support = 2 scaffold_14 - intron 11386935-11387002 asmbl_13461 scaffold_14 - retained_intron 11386935-11387002 asmbl_13463 // Retained and Spliced Intron # retained_intron 11388081-11388304 (orient:-) max_ev_support = 1 # spliced_intron 11388081-11388304 (orient:-) max_ev_support = 2 scaffold_14 - intron 11388081-11388304 asmbl_13460,asmbl_13461,asmbl_13462 scaffold_14 - retained_intron 11388081-11388304 asmbl_13464,asmbl_13465 // Retained and Spliced Intron # retained_intron 11569194-11569328 (orient:-) max_ev_support = 1 # spliced_intron 11569194-11569328 (orient:-) max_ev_support = 2 scaffold_14 - intron 11569194-11569328 asmbl_13477 scaffold_14 - retained_intron 11569194-11569328 asmbl_13479 // Exon Skipping and Retention # skipped_exon 11572188-11574063 (orient:-) max_ev_support = 2 # retained_exon 11573626-11573660 (orient:-) max_ev_support = 3 scaffold_14 - retained_exons 11573626-11573660 asmbl_13480 scaffold_14 - intron_skips_exon 11572188-11574063 asmbl_13481,asmbl_13485 // Retained and Spliced Intron # retained_intron 11572188-11573625 (orient:-) max_ev_support = 2 # spliced_intron 11572188-11573625 (orient:-) max_ev_support = 3 scaffold_14 - intron 11572188-11573625 asmbl_13480,asmbl_13487 scaffold_14 - retained_intron 11572188-11573625 asmbl_13482,asmbl_13486 // Retained and Spliced Intron # retained_intron 11572188-11574063 (orient:-) max_ev_support = 2 # spliced_intron 11572188-11574063 (orient:-) max_ev_support = 2 scaffold_14 - intron 11572188-11574063 asmbl_13481,asmbl_13485 scaffold_14 - retained_intron 11572188-11574063 asmbl_13482 // Retained and Spliced Intron # retained_intron 11573661-11574063 (orient:-) max_ev_support = 2 # spliced_intron 11573661-11574063 (orient:-) max_ev_support = 3 scaffold_14 - intron 11573661-11574063 asmbl_13480,asmbl_13486 scaffold_14 - retained_intron 11573661-11574063 asmbl_13482 // Retained and Spliced Intron # retained_intron 11573664-11574063 (orient:-) max_ev_support = 2 # spliced_intron 11573664-11574063 (orient:-) max_ev_support = 1 scaffold_14 - intron 11573664-11574063 asmbl_13487 scaffold_14 - retained_intron 11573664-11574063 asmbl_13482 // Retained and Spliced Intron # retained_intron 11574210-11574361 (orient:-) max_ev_support = 1 # spliced_intron 11574210-11574361 (orient:-) max_ev_support = 3 scaffold_14 - intron 11574210-11574361 asmbl_13480,asmbl_13481,asmbl_13482,asmbl_13486,asmbl_13487 scaffold_14 - retained_intron 11574210-11574361 asmbl_13485 // Exon Skipping and Retention # skipped_exon 11664176-11665506 (orient:-) max_ev_support = 1 # retained_exon 11664755-11665268 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11664755-11664826,11665230-11665268 asmbl_13497,asmbl_13498,asmbl_13500 scaffold_14 - intron_skips_exon 11664176-11665506 asmbl_13499 // Exon Skipping and Retention # skipped_exon 11663691-11664754 (orient:-) max_ev_support = 2 # retained_exon 11664104-11664175 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 11664104-11664175 asmbl_13499 scaffold_14 - intron_skips_exon 11663691-11664754 asmbl_13497,asmbl_13498,asmbl_13500 // Exon Skipping and Retention # skipped_exon 11676499-11677256 (orient:-) max_ev_support = 2 # retained_exon 11676860-11676921 (orient:-) max_ev_support = 2 scaffold_14 - retained_exons 11676860-11676921 asmbl_13504 scaffold_14 - intron_skips_exon 11676499-11677256 asmbl_13505 // Retained and Spliced Intron # retained_intron 11676499-11676859 (orient:-) max_ev_support = 2 # spliced_intron 11676499-11676859 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676499-11676859 asmbl_13504 scaffold_14 - retained_intron 11676499-11676859 asmbl_13506 // Retained and Spliced Intron # retained_intron 11676499-11677256 (orient:-) max_ev_support = 2 # spliced_intron 11676499-11677256 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676499-11677256 asmbl_13505 scaffold_14 - retained_intron 11676499-11677256 asmbl_13506 // Retained and Spliced Intron # retained_intron 11676922-11677256 (orient:-) max_ev_support = 2 # spliced_intron 11676922-11677256 (orient:-) max_ev_support = 2 scaffold_14 - intron 11676922-11677256 asmbl_13504 scaffold_14 - retained_intron 11676922-11677256 asmbl_13506 // Retained and Spliced Intron # retained_intron 11686951-11687213 (orient:-) max_ev_support = 1 # spliced_intron 11686951-11687213 (orient:-) max_ev_support = 3 scaffold_14 - intron 11686951-11687213 asmbl_13507,asmbl_13508,asmbl_13510 scaffold_14 - retained_intron 11686951-11687213 asmbl_13509 // Retained and Spliced Intron # retained_intron 11685485-11685674 (orient:-) max_ev_support = 1 # spliced_intron 11685485-11685674 (orient:-) max_ev_support = 2 scaffold_14 - intron 11685485-11685674 asmbl_13507,asmbl_13508,asmbl_13509 scaffold_14 - retained_intron 11685485-11685674 asmbl_13510 // Retained and Spliced Intron # retained_intron 11759003-11759212 (orient:-) max_ev_support = 3 # spliced_intron 11759003-11759212 (orient:-) max_ev_support = 3 scaffold_14 - intron 11759003-11759212 asmbl_13515 scaffold_14 - retained_intron 11759003-11759212 asmbl_13513,asmbl_13514 // Retained and Spliced Intron # retained_intron 11764873-11765001 (orient:-) max_ev_support = 1 # spliced_intron 11764873-11765001 (orient:-) max_ev_support = 2 scaffold_14 - intron 11764873-11765001 asmbl_13516 scaffold_14 - retained_intron 11764873-11765001 asmbl_13517 // Retained and Spliced Intron # retained_intron 11792025-11792322 (orient:-) max_ev_support = 3 # spliced_intron 11792025-11792322 (orient:-) max_ev_support = 2 scaffold_14 - intron 11792025-11792322 asmbl_13521 scaffold_14 - retained_intron 11792025-11792322 asmbl_13520 // Retained and Spliced Intron # retained_intron 12628130-12628260 (orient:-) max_ev_support = 1 # spliced_intron 12628130-12628260 (orient:-) max_ev_support = 2 scaffold_14 - intron 12628130-12628260 asmbl_13564,asmbl_13568,asmbl_13569,asmbl_13570,asmbl_13571,asmbl_13572 scaffold_14 - retained_intron 12628130-12628260 asmbl_13567 // Retained and Spliced Intron # retained_intron 12707267-12707317 (orient:-) max_ev_support = 1 # spliced_intron 12707267-12707317 (orient:-) max_ev_support = 1 scaffold_14 - intron 12707267-12707317 asmbl_13575 scaffold_14 - retained_intron 12707267-12707317 asmbl_13576 // Retained and Spliced Intron # retained_intron 12751805-12752771 (orient:-) max_ev_support = 4 # spliced_intron 12751805-12752771 (orient:-) max_ev_support = 2 scaffold_14 - intron 12751805-12752771 asmbl_13582,asmbl_13583 scaffold_14 - retained_intron 12751805-12752771 asmbl_13581,asmbl_13584 // Retained and Spliced Intron # retained_intron 12752822-12753014 (orient:-) max_ev_support = 2 # spliced_intron 12752822-12753014 (orient:-) max_ev_support = 2 scaffold_14 - intron 12752822-12753014 asmbl_13583 scaffold_14 - retained_intron 12752822-12753014 asmbl_13581,asmbl_13582,asmbl_13584 // Retained and Spliced Intron # retained_intron 12755086-12755745 (orient:-) max_ev_support = 3 # spliced_intron 12755086-12755745 (orient:-) max_ev_support = 2 scaffold_14 - intron 12755086-12755745 asmbl_13583,asmbl_13588,asmbl_13589 scaffold_14 - retained_intron 12755086-12755745 asmbl_13581,asmbl_13582,asmbl_13586 // Retained and Spliced Intron # retained_intron 12753400-12753507 (orient:-) max_ev_support = 1 # spliced_intron 12753400-12753507 (orient:-) max_ev_support = 2 scaffold_14 - intron 12753400-12753507 asmbl_13581,asmbl_13582,asmbl_13583 scaffold_14 - retained_intron 12753400-12753507 asmbl_13584 // Exon Skipping and Retention # skipped_exon 12807539-12807951 (orient:-) max_ev_support = 2 # retained_exon 12807676-12807719 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 12807676-12807719 asmbl_13593 scaffold_14 - intron_skips_exon 12807539-12807951 asmbl_13592 // Retained and Spliced Intron # retained_intron 12815903-12816062 (orient:-) max_ev_support = 2 # spliced_intron 12815903-12816062 (orient:-) max_ev_support = 3 scaffold_14 - intron 12815903-12816062 asmbl_13595 scaffold_14 - retained_intron 12815903-12816062 asmbl_13596 // Retained and Spliced Intron # retained_intron 12824418-12824705 (orient:-) max_ev_support = 1 # spliced_intron 12824418-12824705 (orient:-) max_ev_support = 2 scaffold_14 - intron 12824418-12824705 asmbl_13598,asmbl_13599,asmbl_13600 scaffold_14 - retained_intron 12824418-12824705 asmbl_13602 // Exon Skipping and Retention # skipped_exon 13262030-13262875 (orient:-) max_ev_support = 1 # retained_exon 13262702-13262758 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 13262702-13262758 asmbl_13616 scaffold_14 - intron_skips_exon 13262030-13262875 asmbl_13615 // Retained and Spliced Intron # retained_intron 14251277-14251622 (orient:-) max_ev_support = 4 # spliced_intron 14251277-14251622 (orient:-) max_ev_support = 2 scaffold_14 - intron 14251277-14251622 asmbl_13667 scaffold_14 - retained_intron 14251277-14251622 asmbl_13666 // Exon Skipping and Retention # skipped_exon 14536262-14536671 (orient:-) max_ev_support = 1 # retained_exon 14536527-14536584 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 14536527-14536584 asmbl_13674 scaffold_14 - intron_skips_exon 14536262-14536671 asmbl_13673 // Exon Skipping and Retention # skipped_exon 14536440-14536729 (orient:-) max_ev_support = 1 # retained_exon 14536527-14536584 (orient:-) max_ev_support = 1 scaffold_14 - retained_exons 14536527-14536584 asmbl_13674 scaffold_14 - intron_skips_exon 14536440-14536729 asmbl_13675 // Retained and Spliced Intron # retained_intron 14545904-14546225 (orient:-) max_ev_support = 3 # spliced_intron 14545904-14546225 (orient:-) max_ev_support = 2 scaffold_14 - intron 14545904-14546225 asmbl_13678 scaffold_14 - retained_intron 14545904-14546225 asmbl_13677 // Retained and Spliced Intron # retained_intron 15345450-15346208 (orient:-) max_ev_support = 2 # spliced_intron 15345450-15346208 (orient:-) max_ev_support = 2 scaffold_14 - intron 15345450-15346208 asmbl_13697 scaffold_14 - retained_intron 15345450-15346208 asmbl_13695 // Retained and Spliced Intron # retained_intron 15345450-15346296 (orient:-) max_ev_support = 2 # spliced_intron 15345450-15346296 (orient:-) max_ev_support = 2 scaffold_14 - intron 15345450-15346296 asmbl_13696 scaffold_14 - retained_intron 15345450-15346296 asmbl_13695 // Retained and Spliced Intron # retained_intron 15346342-15346877 (orient:-) max_ev_support = 2 # spliced_intron 15346342-15346877 (orient:-) max_ev_support = 2 scaffold_14 - intron 15346342-15346877 asmbl_13696,asmbl_13697 scaffold_14 - retained_intron 15346342-15346877 asmbl_13695 // Retained and Spliced Intron # retained_intron 15347218-15347549 (orient:-) max_ev_support = 1 # spliced_intron 15347218-15347549 (orient:-) max_ev_support = 2 scaffold_14 - intron 15347218-15347549 asmbl_13695,asmbl_13696,asmbl_13697 scaffold_14 - retained_intron 15347218-15347549 asmbl_13698 // Retained and Spliced Intron # retained_intron 15693711-15693818 (orient:-) max_ev_support = 1 # spliced_intron 15693711-15693818 (orient:-) max_ev_support = 1 scaffold_14 - intron 15693711-15693818 asmbl_13719 scaffold_14 - retained_intron 15693711-15693818 asmbl_13720 // Retained and Spliced Intron # retained_intron 15693741-15693887 (orient:-) max_ev_support = 1 # spliced_intron 15693741-15693887 (orient:-) max_ev_support = 1 scaffold_14 - intron 15693741-15693887 asmbl_13721 scaffold_14 - retained_intron 15693741-15693887 asmbl_13720 // Retained and Spliced Intron # retained_intron 15693744-15694154 (orient:-) max_ev_support = 1 # spliced_intron 15693744-15694154 (orient:-) max_ev_support = 1 scaffold_14 - intron 15693744-15694154 asmbl_13722 scaffold_14 - retained_intron 15693744-15694154 asmbl_13720 // Retained and Spliced Intron # retained_intron 15753825-15753858 (orient:-) max_ev_support = 3 # spliced_intron 15753825-15753858 (orient:-) max_ev_support = 1 scaffold_14 - intron 15753825-15753858 asmbl_13729 scaffold_14 - retained_intron 15753825-15753858 asmbl_13728 // Retained and Spliced Intron # retained_intron 15831084-15831226 (orient:-) max_ev_support = 1 # spliced_intron 15831084-15831226 (orient:-) max_ev_support = 1 scaffold_14 - intron 15831084-15831226 asmbl_13739 scaffold_14 - retained_intron 15831084-15831226 asmbl_13736 // Retained and Spliced Intron # retained_intron 333-442 (orient:+) max_ev_support = 3 # spliced_intron 333-442 (orient:+) max_ev_support = 1 scaffold_1445 + intron 333-442 asmbl_13870 scaffold_1445 + retained_intron 333-442 asmbl_13869 // Retained and Spliced Intron # retained_intron 113-1567 (orient:+) max_ev_support = 9 # spliced_intron 113-1567 (orient:+) max_ev_support = 1 scaffold_149 + intron 113-1567 asmbl_13883 scaffold_149 + retained_intron 113-1567 asmbl_13882 // Retained and Spliced Intron # retained_intron 181512-182202 (orient:+) max_ev_support = 3 # spliced_intron 181512-182202 (orient:+) max_ev_support = 2 scaffold_15 + intron 181512-182202 asmbl_13893 scaffold_15 + retained_intron 181512-182202 asmbl_13892 // Exon Skipping and Retention # skipped_exon 345797-347489 (orient:+) max_ev_support = 1 # retained_exon 346455-346550 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 346455-346550 asmbl_13900 scaffold_15 + intron_skips_exon 345797-347489 asmbl_13901 // Exon Skipping and Retention # skipped_exon 344496-346454 (orient:+) max_ev_support = 2 # retained_exon 345701-345796 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 345701-345796 asmbl_13901 scaffold_15 + intron_skips_exon 344496-346454 asmbl_13900 // Retained and Spliced Intron # retained_intron 389143-389240 (orient:+) max_ev_support = 3 # spliced_intron 389143-389240 (orient:+) max_ev_support = 2 scaffold_15 + intron 389143-389240 asmbl_13913 scaffold_15 + retained_intron 389143-389240 asmbl_13909,asmbl_13910,asmbl_13911 // Retained and Spliced Intron # retained_intron 389347-389455 (orient:+) max_ev_support = 3 # spliced_intron 389347-389455 (orient:+) max_ev_support = 3 scaffold_15 + intron 389347-389455 asmbl_13909,asmbl_13911,asmbl_13913 scaffold_15 + retained_intron 389347-389455 asmbl_13910,asmbl_13914 // Retained and Spliced Intron # retained_intron 400486-400509 (orient:+) max_ev_support = 3 # spliced_intron 400486-400509 (orient:+) max_ev_support = 1 scaffold_15 + intron 400486-400509 asmbl_13916 scaffold_15 + retained_intron 400486-400509 asmbl_13915 // Retained and Spliced Intron # retained_intron 1598964-1599034 (orient:+) max_ev_support = 1 # spliced_intron 1598964-1599034 (orient:+) max_ev_support = 2 scaffold_15 + intron 1598964-1599034 asmbl_13964 scaffold_15 + retained_intron 1598964-1599034 asmbl_13965 // Retained and Spliced Intron # retained_intron 1712462-1712546 (orient:+) max_ev_support = 1 # spliced_intron 1712462-1712546 (orient:+) max_ev_support = 2 scaffold_15 + intron 1712462-1712546 asmbl_13973,asmbl_13974,asmbl_13979 scaffold_15 + retained_intron 1712462-1712546 asmbl_13976,asmbl_13977,asmbl_13978 // Exon Skipping and Retention # skipped_exon 1962523-1963918 (orient:+) max_ev_support = 1 # retained_exon 1963609-1963689 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 1963609-1963689 asmbl_13980 scaffold_15 + intron_skips_exon 1962523-1963918 asmbl_13982,asmbl_13983 // Exon Skipping and Retention # skipped_exon 1961303-1961855 (orient:+) max_ev_support = 1 # retained_exon 1961658-1961770 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 1961658-1961770 asmbl_13982 scaffold_15 + intron_skips_exon 1961303-1961855 asmbl_13983 // Retained and Spliced Intron # retained_intron 2564009-2564591 (orient:+) max_ev_support = 1 # spliced_intron 2564009-2564591 (orient:+) max_ev_support = 1 scaffold_15 + intron 2564009-2564591 asmbl_14006,asmbl_14008 scaffold_15 + retained_intron 2564009-2564591 asmbl_14009 // Retained and Spliced Intron # retained_intron 2564142-2564591 (orient:+) max_ev_support = 1 # spliced_intron 2564142-2564591 (orient:+) max_ev_support = 2 scaffold_15 + intron 2564142-2564591 asmbl_14004 scaffold_15 + retained_intron 2564142-2564591 asmbl_14009 // Retained and Spliced Intron # retained_intron 2603301-2603322 (orient:+) max_ev_support = 3 # spliced_intron 2603301-2603322 (orient:+) max_ev_support = 1 scaffold_15 + intron 2603301-2603322 asmbl_14012 scaffold_15 + retained_intron 2603301-2603322 asmbl_14011,asmbl_14013 // Retained and Spliced Intron # retained_intron 2603367-2603410 (orient:+) max_ev_support = 3 # spliced_intron 2603367-2603410 (orient:+) max_ev_support = 1 scaffold_15 + intron 2603367-2603410 asmbl_14012,asmbl_14013 scaffold_15 + retained_intron 2603367-2603410 asmbl_14011 // Retained and Spliced Intron # retained_intron 2797848-2798115 (orient:+) max_ev_support = 2 # spliced_intron 2797848-2798115 (orient:+) max_ev_support = 1 scaffold_15 + intron 2797848-2798115 asmbl_14021 scaffold_15 + retained_intron 2797848-2798115 asmbl_14020 // Exon Skipping and Retention # skipped_exon 2797848-2798457 (orient:+) max_ev_support = 1 # retained_exon 2798116-2798143 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 2798116-2798143 asmbl_14021 scaffold_15 + intron_skips_exon 2797848-2798457 asmbl_14022,asmbl_14023 // Exon Skipping and Retention # skipped_exon 3898968-3900665 (orient:+) max_ev_support = 1 # retained_exon 3899298-3899355 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 3899298-3899355 asmbl_14053 scaffold_15 + intron_skips_exon 3898968-3900665 asmbl_14054 // Exon Skipping and Retention # skipped_exon 3917413-3919012 (orient:+) max_ev_support = 1 # retained_exon 3918068-3918098 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 3918068-3918098 asmbl_14056 scaffold_15 + intron_skips_exon 3917413-3919012 asmbl_14057 // Exon Skipping and Retention # skipped_exon 3916766-3918067 (orient:+) max_ev_support = 2 # retained_exon 3917382-3917412 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 3917382-3917412 asmbl_14057 scaffold_15 + intron_skips_exon 3916766-3918067 asmbl_14056 // Retained and Spliced Intron # retained_intron 4231185-4231387 (orient:+) max_ev_support = 2 # spliced_intron 4231185-4231387 (orient:+) max_ev_support = 2 scaffold_15 + intron 4231185-4231387 asmbl_14071,asmbl_14072 scaffold_15 + retained_intron 4231185-4231387 asmbl_14069 // Retained and Spliced Intron # retained_intron 4231266-4231387 (orient:+) max_ev_support = 2 # spliced_intron 4231266-4231387 (orient:+) max_ev_support = 1 scaffold_15 + intron 4231266-4231387 asmbl_14074 scaffold_15 + retained_intron 4231266-4231387 asmbl_14069 // Exon Skipping and Retention # skipped_exon 4230907-4231387 (orient:+) max_ev_support = 2 # retained_exon 4231073-4231184 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 4231073-4231184 asmbl_14071,asmbl_14072 scaffold_15 + intron_skips_exon 4230907-4231387 asmbl_14070,asmbl_14073,asmbl_14075,asmbl_14076 // Retained and Spliced Intron # retained_intron 4231931-4232179 (orient:+) max_ev_support = 1 # spliced_intron 4231931-4232179 (orient:+) max_ev_support = 2 scaffold_15 + intron 4231931-4232179 asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14074,asmbl_14076 scaffold_15 + retained_intron 4231931-4232179 asmbl_14073,asmbl_14075 // Retained and Spliced Intron # retained_intron 4232365-4232536 (orient:+) max_ev_support = 1 # spliced_intron 4232365-4232536 (orient:+) max_ev_support = 2 scaffold_15 + intron 4232365-4232536 asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14074,asmbl_14075 scaffold_15 + retained_intron 4232365-4232536 asmbl_14073,asmbl_14076 // Exon Skipping and Retention # skipped_exon 4230907-4231387 (orient:+) max_ev_support = 2 # retained_exon 4231073-4231265 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 4231073-4231265 asmbl_14074 scaffold_15 + intron_skips_exon 4230907-4231387 asmbl_14070,asmbl_14073,asmbl_14075,asmbl_14076 // Retained and Spliced Intron # retained_intron 4232612-4232777 (orient:+) max_ev_support = 2 # spliced_intron 4232612-4232777 (orient:+) max_ev_support = 2 scaffold_15 + intron 4232612-4232777 asmbl_14070,asmbl_14071,asmbl_14072,asmbl_14073,asmbl_14074,asmbl_14075,asmbl_14076 scaffold_15 + retained_intron 4232612-4232777 asmbl_14077 // Retained and Spliced Intron # retained_intron 4492518-4492646 (orient:+) max_ev_support = 1 # spliced_intron 4492518-4492646 (orient:+) max_ev_support = 2 scaffold_15 + intron 4492518-4492646 asmbl_14083,asmbl_14085,asmbl_14086,asmbl_14087,asmbl_14089 scaffold_15 + retained_intron 4492518-4492646 asmbl_14084 // Retained and Spliced Intron # retained_intron 4494181-4494312 (orient:+) max_ev_support = 1 # spliced_intron 4494181-4494312 (orient:+) max_ev_support = 2 scaffold_15 + intron 4494181-4494312 asmbl_14083,asmbl_14084,asmbl_14086,asmbl_14089 scaffold_15 + retained_intron 4494181-4494312 asmbl_14085,asmbl_14087 // Retained and Spliced Intron # retained_intron 4493112-4493215 (orient:+) max_ev_support = 1 # spliced_intron 4493112-4493215 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493112-4493215 asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089 scaffold_15 + retained_intron 4493112-4493215 asmbl_14086,asmbl_14087 // Retained and Spliced Intron # retained_intron 4493364-4493480 (orient:+) max_ev_support = 1 # spliced_intron 4493364-4493480 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493364-4493480 asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089 scaffold_15 + retained_intron 4493364-4493480 asmbl_14086,asmbl_14087 // Retained and Spliced Intron # retained_intron 4493750-4493846 (orient:+) max_ev_support = 1 # spliced_intron 4493750-4493846 (orient:+) max_ev_support = 2 scaffold_15 + intron 4493750-4493846 asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14089 scaffold_15 + retained_intron 4493750-4493846 asmbl_14086,asmbl_14087 // Retained and Spliced Intron # retained_intron 4491295-4491494 (orient:+) max_ev_support = 1 # spliced_intron 4491295-4491494 (orient:+) max_ev_support = 2 scaffold_15 + intron 4491295-4491494 asmbl_14083,asmbl_14084,asmbl_14085,asmbl_14086,asmbl_14087,asmbl_14088 scaffold_15 + retained_intron 4491295-4491494 asmbl_14089 // Retained and Spliced Intron # retained_intron 4500541-4500727 (orient:+) max_ev_support = 2 # spliced_intron 4500541-4500727 (orient:+) max_ev_support = 2 scaffold_15 + intron 4500541-4500727 asmbl_14090,asmbl_14093,asmbl_14094 scaffold_15 + retained_intron 4500541-4500727 asmbl_14092 // Retained and Spliced Intron # retained_intron 4497290-4497450 (orient:+) max_ev_support = 1 # spliced_intron 4497290-4497450 (orient:+) max_ev_support = 2 scaffold_15 + intron 4497290-4497450 asmbl_14090 scaffold_15 + retained_intron 4497290-4497450 asmbl_14093 // Exon Skipping and Retention # skipped_exon 4566359-4566986 (orient:+) max_ev_support = 3 # retained_exon 4566557-4566617 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 4566557-4566617 asmbl_14101 scaffold_15 + intron_skips_exon 4566359-4566986 asmbl_14100,asmbl_14104 // Exon Skipping and Retention # skipped_exon 4566359-4566986 (orient:+) max_ev_support = 3 # retained_exon 4566580-4566617 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 4566580-4566617 asmbl_14103,asmbl_14105 scaffold_15 + intron_skips_exon 4566359-4566986 asmbl_14100,asmbl_14104 // Retained and Spliced Intron # retained_intron 4753368-4753541 (orient:+) max_ev_support = 2 # spliced_intron 4753368-4753541 (orient:+) max_ev_support = 2 scaffold_15 + intron 4753368-4753541 asmbl_14111 scaffold_15 + retained_intron 4753368-4753541 asmbl_14110,asmbl_14112 // Retained and Spliced Intron # retained_intron 4753209-4753331 (orient:+) max_ev_support = 2 # spliced_intron 4753209-4753331 (orient:+) max_ev_support = 2 scaffold_15 + intron 4753209-4753331 asmbl_14110,asmbl_14111 scaffold_15 + retained_intron 4753209-4753331 asmbl_14112 // Retained and Spliced Intron # retained_intron 4964468-4964665 (orient:+) max_ev_support = 1 # spliced_intron 4964468-4964665 (orient:+) max_ev_support = 2 scaffold_15 + intron 4964468-4964665 asmbl_14118,asmbl_14120,asmbl_14121,asmbl_14126 scaffold_15 + retained_intron 4964468-4964665 asmbl_14124 // Retained and Spliced Intron # retained_intron 4964556-4964665 (orient:+) max_ev_support = 1 # spliced_intron 4964556-4964665 (orient:+) max_ev_support = 1 scaffold_15 + intron 4964556-4964665 asmbl_14123,asmbl_14125,asmbl_14127 scaffold_15 + retained_intron 4964556-4964665 asmbl_14124 // Retained and Spliced Intron # retained_intron 5144744-5144821 (orient:+) max_ev_support = 1 # spliced_intron 5144744-5144821 (orient:+) max_ev_support = 2 scaffold_15 + intron 5144744-5144821 asmbl_14133,asmbl_14135 scaffold_15 + retained_intron 5144744-5144821 asmbl_14134 // Retained and Spliced Intron # retained_intron 5144985-5145081 (orient:+) max_ev_support = 1 # spliced_intron 5144985-5145081 (orient:+) max_ev_support = 2 scaffold_15 + intron 5144985-5145081 asmbl_14133,asmbl_14134 scaffold_15 + retained_intron 5144985-5145081 asmbl_14135 // Retained and Spliced Intron # retained_intron 5835875-5836379 (orient:+) max_ev_support = 3 # spliced_intron 5835875-5836379 (orient:+) max_ev_support = 2 scaffold_15 + intron 5835875-5836379 asmbl_14170 scaffold_15 + retained_intron 5835875-5836379 asmbl_14169 // Retained and Spliced Intron # retained_intron 6190234-6190253 (orient:+) max_ev_support = 3 # spliced_intron 6190234-6190253 (orient:+) max_ev_support = 1 scaffold_15 + intron 6190234-6190253 asmbl_14188 scaffold_15 + retained_intron 6190234-6190253 asmbl_14187 // Retained and Spliced Intron # retained_intron 6794505-6794579 (orient:+) max_ev_support = 1 # spliced_intron 6794505-6794579 (orient:+) max_ev_support = 3 scaffold_15 + intron 6794505-6794579 asmbl_14206,asmbl_14207 scaffold_15 + retained_intron 6794505-6794579 asmbl_14208 // Retained and Spliced Intron # retained_intron 6961759-6962168 (orient:+) max_ev_support = 2 # spliced_intron 6961759-6962168 (orient:+) max_ev_support = 1 scaffold_15 + intron 6961759-6962168 asmbl_14212 scaffold_15 + retained_intron 6961759-6962168 asmbl_14211 // Exon Skipping and Retention # skipped_exon 6961151-6961829 (orient:+) max_ev_support = 1 # retained_exon 6961608-6961758 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 6961608-6961758 asmbl_14212 scaffold_15 + intron_skips_exon 6961151-6961829 asmbl_14213 // Exon Skipping and Retention # skipped_exon 7303308-7303635 (orient:+) max_ev_support = 2 # retained_exon 7303426-7303476 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 7303426-7303476 asmbl_14232 scaffold_15 + intron_skips_exon 7303308-7303635 asmbl_14231 // Exon Skipping and Retention # skipped_exon 7792749-7793647 (orient:+) max_ev_support = 2 # retained_exon 7793233-7793349 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 7793233-7793349 asmbl_14243 scaffold_15 + intron_skips_exon 7792749-7793647 asmbl_14244 // Retained and Spliced Intron # retained_intron 7840903-7841007 (orient:+) max_ev_support = 1 # spliced_intron 7840903-7841007 (orient:+) max_ev_support = 2 scaffold_15 + intron 7840903-7841007 asmbl_14249,asmbl_14251 scaffold_15 + retained_intron 7840903-7841007 asmbl_14250 // Retained and Spliced Intron # retained_intron 8620031-8620119 (orient:+) max_ev_support = 2 # spliced_intron 8620031-8620119 (orient:+) max_ev_support = 2 scaffold_15 + intron 8620031-8620119 asmbl_14285,asmbl_14287,asmbl_14288 scaffold_15 + retained_intron 8620031-8620119 asmbl_14286 // Retained and Spliced Intron # retained_intron 8828920-8829390 (orient:+) max_ev_support = 2 # spliced_intron 8828920-8829390 (orient:+) max_ev_support = 2 scaffold_15 + intron 8828920-8829390 asmbl_14301,asmbl_14303 scaffold_15 + retained_intron 8828920-8829390 asmbl_14302 // Retained and Spliced Intron # retained_intron 8829496-8829673 (orient:+) max_ev_support = 2 # spliced_intron 8829496-8829673 (orient:+) max_ev_support = 2 scaffold_15 + intron 8829496-8829673 asmbl_14301 scaffold_15 + retained_intron 8829496-8829673 asmbl_14302,asmbl_14303 // Exon Skipping and Retention # skipped_exon 8984400-8986848 (orient:+) max_ev_support = 1 # retained_exon 8986430-8986483 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 8986430-8986483 asmbl_14316 scaffold_15 + intron_skips_exon 8984400-8986848 asmbl_14318,asmbl_14319 // Retained and Spliced Intron # retained_intron 9289598-9289814 (orient:+) max_ev_support = 1 # spliced_intron 9289598-9289814 (orient:+) max_ev_support = 1 scaffold_15 + intron 9289598-9289814 asmbl_14327,asmbl_14328,asmbl_14329 scaffold_15 + retained_intron 9289598-9289814 asmbl_14330 // Exon Skipping and Retention # skipped_exon 9723365-9725629 (orient:+) max_ev_support = 1 # retained_exon 9724166-9724204 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 9724166-9724204 asmbl_14347 scaffold_15 + intron_skips_exon 9723365-9725629 asmbl_14349 // Retained and Spliced Intron # retained_intron 9818455-9818660 (orient:+) max_ev_support = 1 # spliced_intron 9818455-9818660 (orient:+) max_ev_support = 2 scaffold_15 + intron 9818455-9818660 asmbl_14358,asmbl_14362,asmbl_14364 scaffold_15 + retained_intron 9818455-9818660 asmbl_14361,asmbl_14363,asmbl_14365 // Retained and Spliced Intron # retained_intron 9819517-9819607 (orient:+) max_ev_support = 1 # spliced_intron 9819517-9819607 (orient:+) max_ev_support = 2 scaffold_15 + intron 9819517-9819607 asmbl_14358,asmbl_14361,asmbl_14364,asmbl_14365 scaffold_15 + retained_intron 9819517-9819607 asmbl_14362,asmbl_14363 // Retained and Spliced Intron # retained_intron 9817941-9818374 (orient:+) max_ev_support = 1 # spliced_intron 9817941-9818374 (orient:+) max_ev_support = 2 scaffold_15 + intron 9817941-9818374 asmbl_14358,asmbl_14361,asmbl_14362 scaffold_15 + retained_intron 9817941-9818374 asmbl_14363,asmbl_14364,asmbl_14365 // Retained and Spliced Intron # retained_intron 9873560-9873882 (orient:+) max_ev_support = 1 # spliced_intron 9873560-9873882 (orient:+) max_ev_support = 2 scaffold_15 + intron 9873560-9873882 asmbl_14371,asmbl_14373 scaffold_15 + retained_intron 9873560-9873882 asmbl_14375 // Retained and Spliced Intron # retained_intron 10633902-10633978 (orient:+) max_ev_support = 2 # spliced_intron 10633902-10633978 (orient:+) max_ev_support = 1 scaffold_15 + intron 10633902-10633978 asmbl_14404 scaffold_15 + retained_intron 10633902-10633978 asmbl_14402,asmbl_14403 // Retained and Spliced Intron # retained_intron 10768425-10768689 (orient:+) max_ev_support = 1 # spliced_intron 10768425-10768689 (orient:+) max_ev_support = 2 scaffold_15 + intron 10768425-10768689 asmbl_14405,asmbl_14406,asmbl_14409,asmbl_14410 scaffold_15 + retained_intron 10768425-10768689 asmbl_14407,asmbl_14408 // Retained and Spliced Intron # retained_intron 10766606-10766774 (orient:+) max_ev_support = 1 # spliced_intron 10766606-10766774 (orient:+) max_ev_support = 2 scaffold_15 + intron 10766606-10766774 asmbl_14405,asmbl_14406,asmbl_14408,asmbl_14409,asmbl_14410 scaffold_15 + retained_intron 10766606-10766774 asmbl_14411 // Retained and Spliced Intron # retained_intron 11304106-11304275 (orient:+) max_ev_support = 2 # spliced_intron 11304106-11304275 (orient:+) max_ev_support = 2 scaffold_15 + intron 11304106-11304275 asmbl_14435,asmbl_14438,asmbl_14439,asmbl_14440 scaffold_15 + retained_intron 11304106-11304275 asmbl_14437 // Retained and Spliced Intron # retained_intron 11301555-11302007 (orient:+) max_ev_support = 1 # spliced_intron 11301555-11302007 (orient:+) max_ev_support = 2 scaffold_15 + intron 11301555-11302007 asmbl_14435 scaffold_15 + retained_intron 11301555-11302007 asmbl_14439 // Exon Skipping and Retention # skipped_exon 12030067-12032794 (orient:+) max_ev_support = 3 # retained_exon 12032101-12032194 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 12032101-12032194 asmbl_14457 scaffold_15 + intron_skips_exon 12030067-12032794 asmbl_14456,asmbl_14459 // Exon Skipping and Retention # skipped_exon 12039034-12039793 (orient:+) max_ev_support = 1 # retained_exon 12039326-12039514 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 12039326-12039514 asmbl_14460,asmbl_14462 scaffold_15 + intron_skips_exon 12039034-12039793 asmbl_14463 // Exon Skipping and Retention # skipped_exon 12123673-12125251 (orient:+) max_ev_support = 1 # retained_exon 12123802-12123873 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 12123802-12123873 asmbl_14482 scaffold_15 + intron_skips_exon 12123673-12125251 asmbl_14483 // Retained and Spliced Intron # retained_intron 12422231-12422360 (orient:+) max_ev_support = 2 # spliced_intron 12422231-12422360 (orient:+) max_ev_support = 1 scaffold_15 + intron 12422231-12422360 asmbl_14505 scaffold_15 + retained_intron 12422231-12422360 asmbl_14501,asmbl_14504,asmbl_14506,asmbl_14507 // Retained and Spliced Intron # retained_intron 12422505-12422732 (orient:+) max_ev_support = 1 # spliced_intron 12422505-12422732 (orient:+) max_ev_support = 2 scaffold_15 + intron 12422505-12422732 asmbl_14501,asmbl_14505,asmbl_14506 scaffold_15 + retained_intron 12422505-12422732 asmbl_14504,asmbl_14507 // Retained and Spliced Intron # retained_intron 12421366-12421557 (orient:+) max_ev_support = 1 # spliced_intron 12421366-12421557 (orient:+) max_ev_support = 2 scaffold_15 + intron 12421366-12421557 asmbl_14501,asmbl_14504,asmbl_14505 scaffold_15 + retained_intron 12421366-12421557 asmbl_14506,asmbl_14507 // Retained and Spliced Intron # retained_intron 12421730-12421933 (orient:+) max_ev_support = 1 # spliced_intron 12421730-12421933 (orient:+) max_ev_support = 2 scaffold_15 + intron 12421730-12421933 asmbl_14501,asmbl_14504,asmbl_14505 scaffold_15 + retained_intron 12421730-12421933 asmbl_14506,asmbl_14507 // Retained and Spliced Intron # retained_intron 12434240-12434471 (orient:+) max_ev_support = 1 # spliced_intron 12434240-12434471 (orient:+) max_ev_support = 1 scaffold_15 + intron 12434240-12434471 asmbl_14509 scaffold_15 + retained_intron 12434240-12434471 asmbl_14508,asmbl_14510,asmbl_14511,asmbl_14512 // Retained and Spliced Intron # retained_intron 12435253-12435567 (orient:+) max_ev_support = 1 # spliced_intron 12435253-12435567 (orient:+) max_ev_support = 1 scaffold_15 + intron 12435253-12435567 asmbl_14509 scaffold_15 + retained_intron 12435253-12435567 asmbl_14508,asmbl_14510,asmbl_14511,asmbl_14512 // Retained and Spliced Intron # retained_intron 12525670-12525837 (orient:+) max_ev_support = 2 # spliced_intron 12525670-12525837 (orient:+) max_ev_support = 2 scaffold_15 + intron 12525670-12525837 asmbl_14520 scaffold_15 + retained_intron 12525670-12525837 asmbl_14521 // Retained and Spliced Intron # retained_intron 12621910-12622004 (orient:+) max_ev_support = 3 # spliced_intron 12621910-12622004 (orient:+) max_ev_support = 1 scaffold_15 + intron 12621910-12622004 asmbl_14529 scaffold_15 + retained_intron 12621910-12622004 asmbl_14528 // Retained and Spliced Intron # retained_intron 12748286-12748489 (orient:+) max_ev_support = 1 # spliced_intron 12748286-12748489 (orient:+) max_ev_support = 2 scaffold_15 + intron 12748286-12748489 asmbl_14540,asmbl_14541,asmbl_14544,asmbl_14545,asmbl_14546 scaffold_15 + retained_intron 12748286-12748489 asmbl_14543 // Retained and Spliced Intron # retained_intron 12748652-12748931 (orient:+) max_ev_support = 1 # spliced_intron 12748652-12748931 (orient:+) max_ev_support = 2 scaffold_15 + intron 12748652-12748931 asmbl_14540,asmbl_14541,asmbl_14544,asmbl_14545,asmbl_14546 scaffold_15 + retained_intron 12748652-12748931 asmbl_14543 // Retained and Spliced Intron # retained_intron 12742577-12743313 (orient:+) max_ev_support = 1 # spliced_intron 12742577-12743313 (orient:+) max_ev_support = 2 scaffold_15 + intron 12742577-12743313 asmbl_14540,asmbl_14543,asmbl_14545 scaffold_15 + retained_intron 12742577-12743313 asmbl_14546,asmbl_14547 // Retained and Spliced Intron # retained_intron 12742614-12743313 (orient:+) max_ev_support = 1 # spliced_intron 12742614-12743313 (orient:+) max_ev_support = 2 scaffold_15 + intron 12742614-12743313 asmbl_14541,asmbl_14544 scaffold_15 + retained_intron 12742614-12743313 asmbl_14546,asmbl_14547 // Retained and Spliced Intron # retained_intron 13041931-13042295 (orient:+) max_ev_support = 2 # spliced_intron 13041931-13042295 (orient:+) max_ev_support = 3 scaffold_15 + intron 13041931-13042295 asmbl_14559 scaffold_15 + retained_intron 13041931-13042295 asmbl_14560,asmbl_14563 // Retained and Spliced Intron # retained_intron 13325170-13325463 (orient:+) max_ev_support = 2 # spliced_intron 13325170-13325463 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325170-13325463 asmbl_14571,asmbl_14575,asmbl_14580,asmbl_14581 scaffold_15 + retained_intron 13325170-13325463 asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582 // Retained and Spliced Intron # retained_intron 13325591-13325794 (orient:+) max_ev_support = 2 # spliced_intron 13325591-13325794 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325591-13325794 asmbl_14571,asmbl_14575,asmbl_14580 scaffold_15 + retained_intron 13325591-13325794 asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14581,asmbl_14582 // Retained and Spliced Intron # retained_intron 13325950-13326951 (orient:+) max_ev_support = 2 # spliced_intron 13325950-13326951 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325950-13326951 asmbl_14571,asmbl_14575,asmbl_14580,asmbl_14581 scaffold_15 + retained_intron 13325950-13326951 asmbl_14573,asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582 // Retained and Spliced Intron # retained_intron 13327077-13327471 (orient:+) max_ev_support = 2 # spliced_intron 13327077-13327471 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327077-13327471 asmbl_14571 scaffold_15 + retained_intron 13327077-13327471 asmbl_14573,asmbl_14574,asmbl_14575,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14580,asmbl_14581,asmbl_14582 // Retained and Spliced Intron # retained_intron 13327570-13327726 (orient:+) max_ev_support = 2 # spliced_intron 13327570-13327726 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327570-13327726 asmbl_14571,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582 scaffold_15 + retained_intron 13327570-13327726 asmbl_14573,asmbl_14574 // Retained and Spliced Intron # retained_intron 13327877-13328035 (orient:+) max_ev_support = 2 # spliced_intron 13327877-13328035 (orient:+) max_ev_support = 1 scaffold_15 + intron 13327877-13328035 asmbl_14571,asmbl_14577,asmbl_14578,asmbl_14579,asmbl_14582 scaffold_15 + retained_intron 13327877-13328035 asmbl_14573,asmbl_14574 // Retained and Spliced Intron # retained_intron 13324142-13324642 (orient:+) max_ev_support = 2 # spliced_intron 13324142-13324642 (orient:+) max_ev_support = 2 scaffold_15 + intron 13324142-13324642 asmbl_14571,asmbl_14573,asmbl_14575,asmbl_14578,asmbl_14579,asmbl_14581,asmbl_14582 scaffold_15 + retained_intron 13324142-13324642 asmbl_14574,asmbl_14577,asmbl_14580 // Retained and Spliced Intron # retained_intron 13324710-13324894 (orient:+) max_ev_support = 2 # spliced_intron 13324710-13324894 (orient:+) max_ev_support = 2 scaffold_15 + intron 13324710-13324894 asmbl_14571,asmbl_14573,asmbl_14575,asmbl_14579,asmbl_14581,asmbl_14582 scaffold_15 + retained_intron 13324710-13324894 asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580 // Retained and Spliced Intron # retained_intron 13325003-13325087 (orient:+) max_ev_support = 2 # spliced_intron 13325003-13325087 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325003-13325087 asmbl_14571,asmbl_14575,asmbl_14579,asmbl_14581 scaffold_15 + retained_intron 13325003-13325087 asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580,asmbl_14582 // Retained and Spliced Intron # retained_intron 13325003-13325106 (orient:+) max_ev_support = 2 # spliced_intron 13325003-13325106 (orient:+) max_ev_support = 2 scaffold_15 + intron 13325003-13325106 asmbl_14573 scaffold_15 + retained_intron 13325003-13325106 asmbl_14574,asmbl_14577,asmbl_14578,asmbl_14580,asmbl_14582 // Retained and Spliced Intron # retained_intron 13725067-13725143 (orient:+) max_ev_support = 3 # spliced_intron 13725067-13725143 (orient:+) max_ev_support = 1 scaffold_15 + intron 13725067-13725143 asmbl_14598 scaffold_15 + retained_intron 13725067-13725143 asmbl_14597 // Retained and Spliced Intron # retained_intron 13972358-13972548 (orient:+) max_ev_support = 2 # spliced_intron 13972358-13972548 (orient:+) max_ev_support = 3 scaffold_15 + intron 13972358-13972548 asmbl_14606,asmbl_14609 scaffold_15 + retained_intron 13972358-13972548 asmbl_14608 // Retained and Spliced Intron # retained_intron 13972065-13972165 (orient:+) max_ev_support = 1 # spliced_intron 13972065-13972165 (orient:+) max_ev_support = 3 scaffold_15 + intron 13972065-13972165 asmbl_14606 scaffold_15 + retained_intron 13972065-13972165 asmbl_14609 // Exon Skipping and Retention # skipped_exon 14510889-14513245 (orient:+) max_ev_support = 2 # retained_exon 14511002-14511039 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 14511002-14511039 asmbl_14632,asmbl_14633 scaffold_15 + intron_skips_exon 14510889-14513245 asmbl_14631 // Retained and Spliced Intron # retained_intron 14663241-14663825 (orient:+) max_ev_support = 4 # spliced_intron 14663241-14663825 (orient:+) max_ev_support = 1 scaffold_15 + intron 14663241-14663825 asmbl_14644 scaffold_15 + retained_intron 14663241-14663825 asmbl_14640 // Retained and Spliced Intron # retained_intron 14663329-14663440 (orient:+) max_ev_support = 2 # spliced_intron 14663329-14663440 (orient:+) max_ev_support = 1 scaffold_15 + intron 14663329-14663440 asmbl_14641 scaffold_15 + retained_intron 14663329-14663440 asmbl_14640 // Retained and Spliced Intron # retained_intron 14678979-14679166 (orient:+) max_ev_support = 3 # spliced_intron 14678979-14679166 (orient:+) max_ev_support = 3 scaffold_15 + intron 14678979-14679166 asmbl_14647 scaffold_15 + retained_intron 14678979-14679166 asmbl_14646 // Retained and Spliced Intron # retained_intron 14893299-14893410 (orient:+) max_ev_support = 5 # spliced_intron 14893299-14893410 (orient:+) max_ev_support = 1 scaffold_15 + intron 14893299-14893410 asmbl_14655,asmbl_14656 scaffold_15 + retained_intron 14893299-14893410 asmbl_14653,asmbl_14654 // Retained and Spliced Intron # retained_intron 14891299-14891623 (orient:+) max_ev_support = 2 # spliced_intron 14891299-14891623 (orient:+) max_ev_support = 3 scaffold_15 + intron 14891299-14891623 asmbl_14653,asmbl_14656 scaffold_15 + retained_intron 14891299-14891623 asmbl_14654,asmbl_14655 // Retained and Spliced Intron # retained_intron 15158080-15158445 (orient:+) max_ev_support = 2 # spliced_intron 15158080-15158445 (orient:+) max_ev_support = 1 scaffold_15 + intron 15158080-15158445 asmbl_14667,asmbl_14668 scaffold_15 + retained_intron 15158080-15158445 asmbl_14665,asmbl_14666 // Exon Skipping and Retention # skipped_exon 15184589-15185470 (orient:+) max_ev_support = 1 # retained_exon 15184893-15185114 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15184893-15185114 asmbl_14674,asmbl_14675,asmbl_14676,asmbl_14677,asmbl_14682,asmbl_14683,asmbl_14684,asmbl_14685,asmbl_14689,asmbl_14690,asmbl_14691 scaffold_15 + intron_skips_exon 15184589-15185470 asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14686,asmbl_14688,asmbl_14692 // Retained and Spliced Intron # retained_intron 15188079-15188653 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15188653 (orient:+) max_ev_support = 1 scaffold_15 + intron 15188079-15188653 asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684,asmbl_14691,asmbl_14692 scaffold_15 + retained_intron 15188079-15188653 asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689 // Retained and Spliced Intron # retained_intron 15188079-15189128 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15189128 (orient:+) max_ev_support = 2 scaffold_15 + intron 15188079-15189128 asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14685,asmbl_14688 scaffold_15 + retained_intron 15188079-15189128 asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689 // Retained and Spliced Intron # retained_intron 15188079-15189525 (orient:+) max_ev_support = 2 # spliced_intron 15188079-15189525 (orient:+) max_ev_support = 1 scaffold_15 + intron 15188079-15189525 asmbl_14681,asmbl_14690 scaffold_15 + retained_intron 15188079-15189525 asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689 // Retained and Spliced Intron # retained_intron 15188738-15189128 (orient:+) max_ev_support = 2 # spliced_intron 15188738-15189128 (orient:+) max_ev_support = 1 scaffold_15 + intron 15188738-15189128 asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684 scaffold_15 + retained_intron 15188738-15189128 asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689,asmbl_14691 // Retained and Spliced Intron # retained_intron 15188738-15189525 (orient:+) max_ev_support = 2 # spliced_intron 15188738-15189525 (orient:+) max_ev_support = 1 scaffold_15 + intron 15188738-15189525 asmbl_14692 scaffold_15 + retained_intron 15188738-15189525 asmbl_14674,asmbl_14680,asmbl_14686,asmbl_14689 // Retained and Spliced Intron # retained_intron 15189220-15189525 (orient:+) max_ev_support = 2 # spliced_intron 15189220-15189525 (orient:+) max_ev_support = 2 scaffold_15 + intron 15189220-15189525 asmbl_14675,asmbl_14676,asmbl_14677,asmbl_14679,asmbl_14682,asmbl_14683,asmbl_14684,asmbl_14688,asmbl_14691 scaffold_15 + retained_intron 15189220-15189525 asmbl_14674,asmbl_14680,asmbl_14685,asmbl_14686,asmbl_14689 // Exon Skipping and Retention # skipped_exon 15188079-15189525 (orient:+) max_ev_support = 1 # retained_exon 15189129-15189219 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15189129-15189219 asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14688,asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684 scaffold_15 + intron_skips_exon 15188079-15189525 asmbl_14681,asmbl_14690 // Exon Skipping and Retention # skipped_exon 15188738-15189525 (orient:+) max_ev_support = 1 # retained_exon 15189129-15189219 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15189129-15189219 asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14688,asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684 scaffold_15 + intron_skips_exon 15188738-15189525 asmbl_14692 // Retained and Spliced Intron # retained_intron 15176771-15176878 (orient:+) max_ev_support = 1 # spliced_intron 15176771-15176878 (orient:+) max_ev_support = 2 scaffold_15 + intron 15176771-15176878 asmbl_14674,asmbl_14675,asmbl_14678,asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14684,asmbl_14685,asmbl_14688,asmbl_14690,asmbl_14691,asmbl_14692 scaffold_15 + retained_intron 15176771-15176878 asmbl_14676,asmbl_14683,asmbl_14686,asmbl_14689 // Retained and Spliced Intron # retained_intron 15179285-15179381 (orient:+) max_ev_support = 1 # spliced_intron 15179285-15179381 (orient:+) max_ev_support = 1 scaffold_15 + intron 15179285-15179381 asmbl_14678 scaffold_15 + retained_intron 15179285-15179381 asmbl_14677,asmbl_14682 // Exon Skipping and Retention # skipped_exon 15188079-15189128 (orient:+) max_ev_support = 2 # retained_exon 15188654-15188737 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15188654-15188737 asmbl_14677,asmbl_14679,asmbl_14683,asmbl_14684,asmbl_14692 scaffold_15 + intron_skips_exon 15188079-15189128 asmbl_14675,asmbl_14676,asmbl_14682,asmbl_14685,asmbl_14688 // Exon Skipping and Retention # skipped_exon 15179044-15179381 (orient:+) max_ev_support = 2 # retained_exon 15179226-15179284 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15179226-15179284 asmbl_14678 scaffold_15 + intron_skips_exon 15179044-15179381 asmbl_14674,asmbl_14675,asmbl_14676,asmbl_14679,asmbl_14680,asmbl_14681,asmbl_14683,asmbl_14684,asmbl_14685,asmbl_14686,asmbl_14688,asmbl_14689,asmbl_14690,asmbl_14691,asmbl_14692 // Exon Skipping and Retention # skipped_exon 15320751-15323082 (orient:+) max_ev_support = 1 # retained_exon 15321517-15321639 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15321517-15321639 asmbl_14697 scaffold_15 + intron_skips_exon 15320751-15323082 asmbl_14698 // Exon Skipping and Retention # skipped_exon 15321640-15324392 (orient:+) max_ev_support = 3 # retained_exon 15323083-15323205 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15323083-15323205 asmbl_14698 scaffold_15 + intron_skips_exon 15321640-15324392 asmbl_14697 // Exon Skipping and Retention # skipped_exon 15345818-15347791 (orient:+) max_ev_support = 1 # retained_exon 15345897-15346020 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15345897-15346020 asmbl_14703 scaffold_15 + intron_skips_exon 15345818-15347791 asmbl_14704 // Exon Skipping and Retention # skipped_exon 15346021-15347989 (orient:+) max_ev_support = 1 # retained_exon 15347792-15347915 (orient:+) max_ev_support = 1 scaffold_15 + retained_exons 15347792-15347915 asmbl_14704 scaffold_15 + intron_skips_exon 15346021-15347989 asmbl_14703 // Retained and Spliced Intron # retained_intron 15355010-15355115 (orient:+) max_ev_support = 2 # spliced_intron 15355010-15355115 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355010-15355115 asmbl_14708,asmbl_14710,asmbl_14712 scaffold_15 + retained_intron 15355010-15355115 asmbl_14706,asmbl_14707,asmbl_14709 // Retained and Spliced Intron # retained_intron 15355053-15355143 (orient:+) max_ev_support = 2 # spliced_intron 15355053-15355143 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355053-15355143 asmbl_14705,asmbl_14711 scaffold_15 + retained_intron 15355053-15355143 asmbl_14706,asmbl_14707,asmbl_14709 // Retained and Spliced Intron # retained_intron 15355271-15355388 (orient:+) max_ev_support = 2 # spliced_intron 15355271-15355388 (orient:+) max_ev_support = 2 scaffold_15 + intron 15355271-15355388 asmbl_14705 scaffold_15 + retained_intron 15355271-15355388 asmbl_14706,asmbl_14707,asmbl_14708,asmbl_14709,asmbl_14711,asmbl_14712 // Retained and Spliced Intron # retained_intron 15355271-15355426 (orient:+) max_ev_support = 2 # spliced_intron 15355271-15355426 (orient:+) max_ev_support = 1 scaffold_15 + intron 15355271-15355426 asmbl_14710 scaffold_15 + retained_intron 15355271-15355426 asmbl_14706,asmbl_14707,asmbl_14708,asmbl_14711,asmbl_14712 // Exon Skipping and Retention # skipped_exon 15409801-15410182 (orient:+) max_ev_support = 2 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_14717,asmbl_14718,asmbl_14725 scaffold_15 + intron_skips_exon 15409801-15410182 asmbl_14716 // Exon Skipping and Retention # skipped_exon 15409801-15410226 (orient:+) max_ev_support = 2 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_14717,asmbl_14718,asmbl_14725 scaffold_15 + intron_skips_exon 15409801-15410226 asmbl_14719 // Exon Skipping and Retention # skipped_exon 15409791-15410185 (orient:+) max_ev_support = 1 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_14717,asmbl_14718,asmbl_14725 scaffold_15 + intron_skips_exon 15409791-15410185 asmbl_14721 // Exon Skipping and Retention # skipped_exon 15409801-15410185 (orient:+) max_ev_support = 1 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_14717,asmbl_14718,asmbl_14725 scaffold_15 + intron_skips_exon 15409801-15410185 asmbl_14722 // Exon Skipping and Retention # skipped_exon 15409791-15410182 (orient:+) max_ev_support = 1 # retained_exon 15409904-15409992 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15409904-15409992 asmbl_14717,asmbl_14718,asmbl_14725 scaffold_15 + intron_skips_exon 15409791-15410182 asmbl_14723 // Retained and Spliced Intron # retained_intron 15409791-15409903 (orient:+) max_ev_support = 1 # spliced_intron 15409791-15409903 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409791-15409903 asmbl_14725 scaffold_15 + retained_intron 15409791-15409903 asmbl_14720,asmbl_14724,asmbl_14726 // Retained and Spliced Intron # retained_intron 15409791-15410182 (orient:+) max_ev_support = 1 # spliced_intron 15409791-15410182 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409791-15410182 asmbl_14723 scaffold_15 + retained_intron 15409791-15410182 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409791-15410185 (orient:+) max_ev_support = 1 # spliced_intron 15409791-15410185 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409791-15410185 asmbl_14721 scaffold_15 + retained_intron 15409791-15410185 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409801-15409903 (orient:+) max_ev_support = 1 # spliced_intron 15409801-15409903 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15409903 asmbl_14717,asmbl_14718 scaffold_15 + retained_intron 15409801-15409903 asmbl_14720,asmbl_14724,asmbl_14726 // Retained and Spliced Intron # retained_intron 15409801-15410182 (orient:+) max_ev_support = 1 # spliced_intron 15409801-15410182 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15410182 asmbl_14716 scaffold_15 + retained_intron 15409801-15410182 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409801-15410185 (orient:+) max_ev_support = 1 # spliced_intron 15409801-15410185 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409801-15410185 asmbl_14722 scaffold_15 + retained_intron 15409801-15410185 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409801-15410226 (orient:+) max_ev_support = 1 # spliced_intron 15409801-15410226 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409801-15410226 asmbl_14719 scaffold_15 + retained_intron 15409801-15410226 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409993-15410182 (orient:+) max_ev_support = 1 # spliced_intron 15409993-15410182 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409993-15410182 asmbl_14718,asmbl_14725 scaffold_15 + retained_intron 15409993-15410182 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409993-15410185 (orient:+) max_ev_support = 1 # spliced_intron 15409993-15410185 (orient:+) max_ev_support = 1 scaffold_15 + intron 15409993-15410185 asmbl_14724 scaffold_15 + retained_intron 15409993-15410185 asmbl_14720 // Retained and Spliced Intron # retained_intron 15409993-15410226 (orient:+) max_ev_support = 1 # spliced_intron 15409993-15410226 (orient:+) max_ev_support = 2 scaffold_15 + intron 15409993-15410226 asmbl_14717,asmbl_14726 scaffold_15 + retained_intron 15409993-15410226 asmbl_14720 // Retained and Spliced Intron # retained_intron 15412571-15412679 (orient:+) max_ev_support = 2 # spliced_intron 15412571-15412679 (orient:+) max_ev_support = 2 scaffold_15 + intron 15412571-15412679 asmbl_14729,asmbl_14737 scaffold_15 + retained_intron 15412571-15412679 asmbl_14727,asmbl_14728,asmbl_14730,asmbl_14731,asmbl_14732,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736 // Retained and Spliced Intron # retained_intron 15414145-15414258 (orient:+) max_ev_support = 2 # spliced_intron 15414145-15414258 (orient:+) max_ev_support = 2 scaffold_15 + intron 15414145-15414258 asmbl_14730,asmbl_14733,asmbl_14736 scaffold_15 + retained_intron 15414145-15414258 asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734 // Retained and Spliced Intron # retained_intron 15414145-15414264 (orient:+) max_ev_support = 2 # spliced_intron 15414145-15414264 (orient:+) max_ev_support = 2 scaffold_15 + intron 15414145-15414264 asmbl_14727 scaffold_15 + retained_intron 15414145-15414264 asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734 // Retained and Spliced Intron # retained_intron 15414145-15414286 (orient:+) max_ev_support = 2 # spliced_intron 15414145-15414286 (orient:+) max_ev_support = 1 scaffold_15 + intron 15414145-15414286 asmbl_14732,asmbl_14735,asmbl_14737 scaffold_15 + retained_intron 15414145-15414286 asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14734 // Retained and Spliced Intron # retained_intron 15414405-15414510 (orient:+) max_ev_support = 2 # spliced_intron 15414405-15414510 (orient:+) max_ev_support = 2 scaffold_15 + intron 15414405-15414510 asmbl_14727,asmbl_14730,asmbl_14732,asmbl_14735,asmbl_14737 scaffold_15 + retained_intron 15414405-15414510 asmbl_14728,asmbl_14729,asmbl_14731,asmbl_14733,asmbl_14734,asmbl_14736 // Retained and Spliced Intron # retained_intron 15413379-15413488 (orient:+) max_ev_support = 2 # spliced_intron 15413379-15413488 (orient:+) max_ev_support = 2 scaffold_15 + intron 15413379-15413488 asmbl_14727,asmbl_14728,asmbl_14732,asmbl_14736 scaffold_15 + retained_intron 15413379-15413488 asmbl_14729,asmbl_14730,asmbl_14731,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14737 // Retained and Spliced Intron # retained_intron 15413602-15413826 (orient:+) max_ev_support = 2 # spliced_intron 15413602-15413826 (orient:+) max_ev_support = 2 scaffold_15 + intron 15413602-15413826 asmbl_14727,asmbl_14728,asmbl_14731 scaffold_15 + retained_intron 15413602-15413826 asmbl_14729,asmbl_14730,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736 // Retained and Spliced Intron # retained_intron 15413654-15413826 (orient:+) max_ev_support = 2 # spliced_intron 15413654-15413826 (orient:+) max_ev_support = 1 scaffold_15 + intron 15413654-15413826 asmbl_14732,asmbl_14737 scaffold_15 + retained_intron 15413654-15413826 asmbl_14729,asmbl_14730,asmbl_14733,asmbl_14734,asmbl_14735,asmbl_14736 // Retained and Spliced Intron # retained_intron 15449482-15449702 (orient:+) max_ev_support = 4 # spliced_intron 15449482-15449702 (orient:+) max_ev_support = 2 scaffold_15 + intron 15449482-15449702 asmbl_14744,asmbl_14746,asmbl_14747 scaffold_15 + retained_intron 15449482-15449702 asmbl_14738 // Exon Skipping and Retention # skipped_exon 15450190-15450391 (orient:+) max_ev_support = 2 # retained_exon 15450277-15450340 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15450277-15450340 asmbl_14738,asmbl_14744,asmbl_14746,asmbl_14747 scaffold_15 + intron_skips_exon 15450190-15450391 asmbl_14740 // Exon Skipping and Retention # skipped_exon 15448589-15449160 (orient:+) max_ev_support = 2 # retained_exon 15448667-15449028 (orient:+) max_ev_support = 2 scaffold_15 + retained_exons 15448667-15448725,15448930-15449028 asmbl_14744,asmbl_14746,asmbl_14747 scaffold_15 + intron_skips_exon 15448589-15449160 asmbl_14738 // Retained and Spliced Intron # retained_intron 15502183-15502253 (orient:+) max_ev_support = 2 # spliced_intron 15502183-15502253 (orient:+) max_ev_support = 3 scaffold_15 + intron 15502183-15502253 asmbl_14751,asmbl_14754,asmbl_14755 scaffold_15 + retained_intron 15502183-15502253 asmbl_14752,asmbl_14753,asmbl_14756,asmbl_14757 // Retained and Spliced Intron # retained_intron 15502347-15502438 (orient:+) max_ev_support = 2 # spliced_intron 15502347-15502438 (orient:+) max_ev_support = 3 scaffold_15 + intron 15502347-15502438 asmbl_14751,asmbl_14753,asmbl_14754,asmbl_14755,asmbl_14756,asmbl_14757 scaffold_15 + retained_intron 15502347-15502438 asmbl_14752 // Retained and Spliced Intron # retained_intron 15501375-15501520 (orient:+) max_ev_support = 2 # spliced_intron 15501375-15501520 (orient:+) max_ev_support = 3 scaffold_15 + intron 15501375-15501520 asmbl_14751,asmbl_14752,asmbl_14753,asmbl_14755 scaffold_15 + retained_intron 15501375-15501520 asmbl_14754 // Retained and Spliced Intron # retained_intron 15501981-15502092 (orient:+) max_ev_support = 1 # spliced_intron 15501981-15502092 (orient:+) max_ev_support = 3 scaffold_15 + intron 15501981-15502092 asmbl_14751,asmbl_14752,asmbl_14753,asmbl_14754,asmbl_14755,asmbl_14756 scaffold_15 + retained_intron 15501981-15502092 asmbl_14757 // Exon Skipping and Retention # skipped_exon 15761181-15761965 (orient:+) max_ev_support = 3 # retained_exon 15761550-15761726 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15761550-15761726 asmbl_14770 scaffold_15 + intron_skips_exon 15761181-15761965 asmbl_14771 // Exon Skipping and Retention # skipped_exon 15855759-15857174 (orient:+) max_ev_support = 3 # retained_exon 15856434-15856547 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15856434-15856547 asmbl_14772,asmbl_14774,asmbl_14777,asmbl_14778,asmbl_14781 scaffold_15 + intron_skips_exon 15855759-15857174 asmbl_14773,asmbl_14775,asmbl_14776 // Exon Skipping and Retention # skipped_exon 15857347-15857984 (orient:+) max_ev_support = 3 # retained_exon 15857503-15857571 (orient:+) max_ev_support = 3 scaffold_15 + retained_exons 15857503-15857571 asmbl_14773,asmbl_14776,asmbl_14777,asmbl_14781 scaffold_15 + intron_skips_exon 15857347-15857984 asmbl_14772 // Retained and Spliced Intron # retained_intron 15857347-15857502 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857502 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857347-15857502 asmbl_14773,asmbl_14776,asmbl_14777,asmbl_14780,asmbl_14781 scaffold_15 + retained_intron 15857347-15857502 asmbl_14778,asmbl_14779 // Retained and Spliced Intron # retained_intron 15857347-15857505 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857505 (orient:+) max_ev_support = 1 scaffold_15 + intron 15857347-15857505 asmbl_14774,asmbl_14775 scaffold_15 + retained_intron 15857347-15857505 asmbl_14778,asmbl_14779 // Retained and Spliced Intron # retained_intron 15857347-15857984 (orient:+) max_ev_support = 2 # spliced_intron 15857347-15857984 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857347-15857984 asmbl_14772 scaffold_15 + retained_intron 15857347-15857984 asmbl_14778,asmbl_14779 // Retained and Spliced Intron # retained_intron 15857572-15857984 (orient:+) max_ev_support = 2 # spliced_intron 15857572-15857984 (orient:+) max_ev_support = 3 scaffold_15 + intron 15857572-15857984 asmbl_14773,asmbl_14774,asmbl_14775,asmbl_14776,asmbl_14777,asmbl_14781 scaffold_15 + retained_intron 15857572-15857984 asmbl_14778,asmbl_14779 // Retained and Spliced Intron # retained_intron 15856548-15857174 (orient:+) max_ev_support = 1 # spliced_intron 15856548-15857174 (orient:+) max_ev_support = 3 scaffold_15 + intron 15856548-15857174 asmbl_14772,asmbl_14774,asmbl_14777,asmbl_14778,asmbl_14781 scaffold_15 + retained_intron 15856548-15857174 asmbl_14779,asmbl_14780 // Retained and Spliced Intron # retained_intron 15914237-15914412 (orient:+) max_ev_support = 2 # spliced_intron 15914237-15914412 (orient:+) max_ev_support = 2 scaffold_15 + intron 15914237-15914412 asmbl_14793,asmbl_14797,asmbl_14798 scaffold_15 + retained_intron 15914237-15914412 asmbl_14794 // Retained and Spliced Intron # retained_intron 15917540-15917607 (orient:+) max_ev_support = 2 # spliced_intron 15917540-15917607 (orient:+) max_ev_support = 3 scaffold_15 + intron 15917540-15917607 asmbl_14792,asmbl_14797,asmbl_14798 scaffold_15 + retained_intron 15917540-15917607 asmbl_14796,asmbl_14799 // Exon Skipping and Retention # skipped_exon 144997-147178 (orient:-) max_ev_support = 1 # retained_exon 145339-145359 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 145339-145359 asmbl_14920,asmbl_14922 scaffold_15 - intron_skips_exon 144997-147178 asmbl_14921 // Exon Skipping and Retention # skipped_exon 149248-152081 (orient:-) max_ev_support = 1 # retained_exon 149590-149655 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 149590-149655 asmbl_14920,asmbl_14922 scaffold_15 - intron_skips_exon 149248-152081 asmbl_14921 // Retained and Spliced Intron # retained_intron 395669-395769 (orient:-) max_ev_support = 1 # spliced_intron 395669-395769 (orient:-) max_ev_support = 3 scaffold_15 - intron 395669-395769 asmbl_14931 scaffold_15 - retained_intron 395669-395769 asmbl_14932 // Retained and Spliced Intron # retained_intron 670210-670293 (orient:-) max_ev_support = 2 # spliced_intron 670210-670293 (orient:-) max_ev_support = 1 scaffold_15 - intron 670210-670293 asmbl_14954 scaffold_15 - retained_intron 670210-670293 asmbl_14952 // Retained and Spliced Intron # retained_intron 1504460-1504632 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1504632 (orient:-) max_ev_support = 1 scaffold_15 - intron 1504460-1504632 asmbl_14969 scaffold_15 - retained_intron 1504460-1504632 asmbl_14966 // Retained and Spliced Intron # retained_intron 1504460-1504656 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1504656 (orient:-) max_ev_support = 2 scaffold_15 - intron 1504460-1504656 asmbl_14968 scaffold_15 - retained_intron 1504460-1504656 asmbl_14966 // Retained and Spliced Intron # retained_intron 1504460-1505131 (orient:-) max_ev_support = 4 # spliced_intron 1504460-1505131 (orient:-) max_ev_support = 2 scaffold_15 - intron 1504460-1505131 asmbl_14967 scaffold_15 - retained_intron 1504460-1505131 asmbl_14966 // Retained and Spliced Intron # retained_intron 1797670-1797717 (orient:-) max_ev_support = 1 # spliced_intron 1797670-1797717 (orient:-) max_ev_support = 1 scaffold_15 - intron 1797670-1797717 asmbl_14984 scaffold_15 - retained_intron 1797670-1797717 asmbl_14985 // Retained and Spliced Intron # retained_intron 1965700-1966897 (orient:-) max_ev_support = 4 # spliced_intron 1965700-1966897 (orient:-) max_ev_support = 2 scaffold_15 - intron 1965700-1966897 asmbl_14988 scaffold_15 - retained_intron 1965700-1966897 asmbl_14987 // Exon Skipping and Retention # skipped_exon 2422714-2424597 (orient:-) max_ev_support = 2 # retained_exon 2423793-2423840 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2423793-2423840 asmbl_15006 scaffold_15 - intron_skips_exon 2422714-2424597 asmbl_15007 // Retained and Spliced Intron # retained_intron 2434220-2434241 (orient:-) max_ev_support = 1 # spliced_intron 2434220-2434241 (orient:-) max_ev_support = 1 scaffold_15 - intron 2434220-2434241 asmbl_15010 scaffold_15 - retained_intron 2434220-2434241 asmbl_15011 // Retained and Spliced Intron # retained_intron 2467971-2467990 (orient:-) max_ev_support = 1 # spliced_intron 2467971-2467990 (orient:-) max_ev_support = 1 scaffold_15 - intron 2467971-2467990 asmbl_15019 scaffold_15 - retained_intron 2467971-2467990 asmbl_15020 // Retained and Spliced Intron # retained_intron 2557700-2557737 (orient:-) max_ev_support = 1 # spliced_intron 2557700-2557737 (orient:-) max_ev_support = 1 scaffold_15 - intron 2557700-2557737 asmbl_15026 scaffold_15 - retained_intron 2557700-2557737 asmbl_15027 // Exon Skipping and Retention # skipped_exon 2565681-2566519 (orient:-) max_ev_support = 2 # retained_exon 2566028-2566120 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2566028-2566120 asmbl_15029,asmbl_15031,asmbl_15032 scaffold_15 - intron_skips_exon 2565681-2566519 asmbl_15030,asmbl_15033 // Exon Skipping and Retention # skipped_exon 2566797-2567481 (orient:-) max_ev_support = 1 # retained_exon 2567077-2567199 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2567077-2567199 asmbl_15029,asmbl_15030,asmbl_15031 scaffold_15 - intron_skips_exon 2566797-2567481 asmbl_15032,asmbl_15033 // Retained and Spliced Intron # retained_intron 2565306-2565577 (orient:-) max_ev_support = 2 # spliced_intron 2565306-2565577 (orient:-) max_ev_support = 2 scaffold_15 - intron 2565306-2565577 asmbl_15029,asmbl_15030 scaffold_15 - retained_intron 2565306-2565577 asmbl_15031,asmbl_15032,asmbl_15033 // Retained and Spliced Intron # retained_intron 2718469-2718646 (orient:-) max_ev_support = 3 # spliced_intron 2718469-2718646 (orient:-) max_ev_support = 2 scaffold_15 - intron 2718469-2718646 asmbl_15042 scaffold_15 - retained_intron 2718469-2718646 asmbl_15041 // Retained and Spliced Intron # retained_intron 2730568-2730589 (orient:-) max_ev_support = 3 # spliced_intron 2730568-2730589 (orient:-) max_ev_support = 2 scaffold_15 - intron 2730568-2730589 asmbl_15045 scaffold_15 - retained_intron 2730568-2730589 asmbl_15044 // Retained and Spliced Intron # retained_intron 2823948-2824025 (orient:-) max_ev_support = 1 # spliced_intron 2823948-2824025 (orient:-) max_ev_support = 4 scaffold_15 - intron 2823948-2824025 asmbl_15061,asmbl_15063 scaffold_15 - retained_intron 2823948-2824025 asmbl_15062 // Retained and Spliced Intron # retained_intron 2903698-2903915 (orient:-) max_ev_support = 2 # spliced_intron 2903698-2903915 (orient:-) max_ev_support = 2 scaffold_15 - intron 2903698-2903915 asmbl_15068 scaffold_15 - retained_intron 2903698-2903915 asmbl_15069,asmbl_15070 // Retained and Spliced Intron # retained_intron 2894311-2894447 (orient:-) max_ev_support = 3 # spliced_intron 2894311-2894447 (orient:-) max_ev_support = 1 scaffold_15 - intron 2894311-2894447 asmbl_15071 scaffold_15 - retained_intron 2894311-2894447 asmbl_15070 // Retained and Spliced Intron # retained_intron 2990755-2990835 (orient:-) max_ev_support = 2 # spliced_intron 2990755-2990835 (orient:-) max_ev_support = 2 scaffold_15 - intron 2990755-2990835 asmbl_15078 scaffold_15 - retained_intron 2990755-2990835 asmbl_15076 // Exon Skipping and Retention # skipped_exon 2990161-2990835 (orient:-) max_ev_support = 2 # retained_exon 2990689-2990754 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 2990689-2990754 asmbl_15078 scaffold_15 - intron_skips_exon 2990161-2990835 asmbl_15077 // Retained and Spliced Intron # retained_intron 3363315-3363443 (orient:-) max_ev_support = 3 # spliced_intron 3363315-3363443 (orient:-) max_ev_support = 2 scaffold_15 - intron 3363315-3363443 asmbl_15096 scaffold_15 - retained_intron 3363315-3363443 asmbl_15095 // Retained and Spliced Intron # retained_intron 3363099-3363201 (orient:-) max_ev_support = 2 # spliced_intron 3363099-3363201 (orient:-) max_ev_support = 2 scaffold_15 - intron 3363099-3363201 asmbl_15095,asmbl_15096 scaffold_15 - retained_intron 3363099-3363201 asmbl_15097 // Exon Skipping and Retention # skipped_exon 3368374-3368889 (orient:-) max_ev_support = 1 # retained_exon 3368556-3368688 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 3368556-3368688 asmbl_15100 scaffold_15 - intron_skips_exon 3368374-3368889 asmbl_15101 // Exon Skipping and Retention # skipped_exon 3713137-3713705 (orient:-) max_ev_support = 1 # retained_exon 3713334-3713461 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 3713334-3713461 asmbl_15124 scaffold_15 - intron_skips_exon 3713137-3713705 asmbl_15125 // Retained and Spliced Intron # retained_intron 4117365-4117553 (orient:-) max_ev_support = 3 # spliced_intron 4117365-4117553 (orient:-) max_ev_support = 2 scaffold_15 - intron 4117365-4117553 asmbl_15131,asmbl_15132,asmbl_15135 scaffold_15 - retained_intron 4117365-4117553 asmbl_15130 // Retained and Spliced Intron # retained_intron 4117643-4117724 (orient:-) max_ev_support = 2 # spliced_intron 4117643-4117724 (orient:-) max_ev_support = 1 scaffold_15 - intron 4117643-4117724 asmbl_15135 scaffold_15 - retained_intron 4117643-4117724 asmbl_15130,asmbl_15132 // Retained and Spliced Intron # retained_intron 4117643-4117871 (orient:-) max_ev_support = 2 # spliced_intron 4117643-4117871 (orient:-) max_ev_support = 2 scaffold_15 - intron 4117643-4117871 asmbl_15131 scaffold_15 - retained_intron 4117643-4117871 asmbl_15130,asmbl_15132 // Exon Skipping and Retention # skipped_exon 4133120-4133882 (orient:-) max_ev_support = 1 # retained_exon 4133428-4133547 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 4133428-4133547 asmbl_15136 scaffold_15 - intron_skips_exon 4133120-4133882 asmbl_15138 // Retained and Spliced Intron # retained_intron 4469772-4470220 (orient:-) max_ev_support = 2 # spliced_intron 4469772-4470220 (orient:-) max_ev_support = 3 scaffold_15 - intron 4469772-4470220 asmbl_15151 scaffold_15 - retained_intron 4469772-4470220 asmbl_15152 // Exon Skipping and Retention # skipped_exon 4757848-4758609 (orient:-) max_ev_support = 1 # retained_exon 4758014-4758185 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 4758014-4758185 asmbl_15161 scaffold_15 - intron_skips_exon 4757848-4758609 asmbl_15162 // Retained and Spliced Intron # retained_intron 4815601-4815751 (orient:-) max_ev_support = 1 # spliced_intron 4815601-4815751 (orient:-) max_ev_support = 2 scaffold_15 - intron 4815601-4815751 asmbl_15170,asmbl_15171,asmbl_15172,asmbl_15174 scaffold_15 - retained_intron 4815601-4815751 asmbl_15173 // Retained and Spliced Intron # retained_intron 4817650-4817737 (orient:-) max_ev_support = 1 # spliced_intron 4817650-4817737 (orient:-) max_ev_support = 2 scaffold_15 - intron 4817650-4817737 asmbl_15170 scaffold_15 - retained_intron 4817650-4817737 asmbl_15174 // Exon Skipping and Retention # skipped_exon 4982605-4984030 (orient:-) max_ev_support = 3 # retained_exon 4983131-4983625 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 4983131-4983625 asmbl_15188 scaffold_15 - intron_skips_exon 4982605-4984030 asmbl_15186,asmbl_15189 // Retained and Spliced Intron # retained_intron 4983626-4984030 (orient:-) max_ev_support = 1 # spliced_intron 4983626-4984030 (orient:-) max_ev_support = 1 scaffold_15 - intron 4983626-4984030 asmbl_15188 scaffold_15 - retained_intron 4983626-4984030 asmbl_15190,asmbl_15191,asmbl_15192 // Exon Skipping and Retention # skipped_exon 5355541-5357686 (orient:-) max_ev_support = 1 # retained_exon 5356434-5356448 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5356434-5356448 asmbl_15210,asmbl_15211 scaffold_15 - intron_skips_exon 5355541-5357686 asmbl_15212 // Retained and Spliced Intron # retained_intron 5453657-5453810 (orient:-) max_ev_support = 2 # spliced_intron 5453657-5453810 (orient:-) max_ev_support = 2 scaffold_15 - intron 5453657-5453810 asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15224 scaffold_15 - retained_intron 5453657-5453810 asmbl_15219,asmbl_15225 // Retained and Spliced Intron # retained_intron 5453993-5454323 (orient:-) max_ev_support = 2 # spliced_intron 5453993-5454323 (orient:-) max_ev_support = 2 scaffold_15 - intron 5453993-5454323 asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15224,asmbl_15225 scaffold_15 - retained_intron 5453993-5454323 asmbl_15219,asmbl_15223 // Retained and Spliced Intron # retained_intron 5454516-5454744 (orient:-) max_ev_support = 2 # spliced_intron 5454516-5454744 (orient:-) max_ev_support = 2 scaffold_15 - intron 5454516-5454744 asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15224,asmbl_15225 scaffold_15 - retained_intron 5454516-5454744 asmbl_15219 // Retained and Spliced Intron # retained_intron 5454907-5455211 (orient:-) max_ev_support = 1 # spliced_intron 5454907-5455211 (orient:-) max_ev_support = 3 scaffold_15 - intron 5454907-5455211 asmbl_15217,asmbl_15218,asmbl_15222,asmbl_15223,asmbl_15225 scaffold_15 - retained_intron 5454907-5455211 asmbl_15224 // Retained and Spliced Intron # retained_intron 5738488-5739051 (orient:-) max_ev_support = 1 # spliced_intron 5738488-5739051 (orient:-) max_ev_support = 1 scaffold_15 - intron 5738488-5739051 asmbl_15244 scaffold_15 - retained_intron 5738488-5739051 asmbl_15241,asmbl_15242,asmbl_15243,asmbl_15245 // Exon Skipping and Retention # skipped_exon 5741750-5743112 (orient:-) max_ev_support = 1 # retained_exon 5742772-5742851 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5742772-5742851 asmbl_15241,asmbl_15243,asmbl_15244 scaffold_15 - intron_skips_exon 5741750-5743112 asmbl_15242 // Exon Skipping and Retention # skipped_exon 5742852-5745664 (orient:-) max_ev_support = 1 # retained_exon 5743113-5743192 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 5743113-5743192 asmbl_15241,asmbl_15242 scaffold_15 - intron_skips_exon 5742852-5745664 asmbl_15243,asmbl_15244 // Retained and Spliced Intron # retained_intron 6080293-6080419 (orient:-) max_ev_support = 1 # spliced_intron 6080293-6080419 (orient:-) max_ev_support = 2 scaffold_15 - intron 6080293-6080419 asmbl_15252 scaffold_15 - retained_intron 6080293-6080419 asmbl_15254 // Retained and Spliced Intron # retained_intron 6080628-6080840 (orient:-) max_ev_support = 1 # spliced_intron 6080628-6080840 (orient:-) max_ev_support = 2 scaffold_15 - intron 6080628-6080840 asmbl_15252 scaffold_15 - retained_intron 6080628-6080840 asmbl_15254 // Retained and Spliced Intron # retained_intron 6104285-6104570 (orient:-) max_ev_support = 1 # spliced_intron 6104285-6104570 (orient:-) max_ev_support = 2 scaffold_15 - intron 6104285-6104570 asmbl_15257,asmbl_15259 scaffold_15 - retained_intron 6104285-6104570 asmbl_15260 // Retained and Spliced Intron # retained_intron 6780650-6780734 (orient:-) max_ev_support = 1 # spliced_intron 6780650-6780734 (orient:-) max_ev_support = 2 scaffold_15 - intron 6780650-6780734 asmbl_15266 scaffold_15 - retained_intron 6780650-6780734 asmbl_15267 // Retained and Spliced Intron # retained_intron 6793556-6793655 (orient:-) max_ev_support = 2 # spliced_intron 6793556-6793655 (orient:-) max_ev_support = 2 scaffold_15 - intron 6793556-6793655 asmbl_15272 scaffold_15 - retained_intron 6793556-6793655 asmbl_15273 // Retained and Spliced Intron # retained_intron 6793556-6793689 (orient:-) max_ev_support = 2 # spliced_intron 6793556-6793689 (orient:-) max_ev_support = 1 scaffold_15 - intron 6793556-6793689 asmbl_15274 scaffold_15 - retained_intron 6793556-6793689 asmbl_15273 // Exon Skipping and Retention # skipped_exon 6883183-6884074 (orient:-) max_ev_support = 1 # retained_exon 6883556-6883630 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 6883556-6883630 asmbl_15275,asmbl_15276,asmbl_15279,asmbl_15281,asmbl_15283 scaffold_15 - intron_skips_exon 6883183-6884074 asmbl_15286 // Exon Skipping and Retention # skipped_exon 6882902-6884459 (orient:-) max_ev_support = 2 # retained_exon 6883099-6883630 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 6883099-6883182,6883556-6883630 asmbl_15276 scaffold_15 - intron_skips_exon 6882902-6884459 asmbl_15278,asmbl_15280,asmbl_15282,asmbl_15285,asmbl_15287 // Exon Skipping and Retention # skipped_exon 6884687-6887444 (orient:-) max_ev_support = 2 # retained_exon 6886779-6886835 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6886779-6886835 asmbl_15276,asmbl_15278,asmbl_15280 scaffold_15 - intron_skips_exon 6884687-6887444 asmbl_15279,asmbl_15281,asmbl_15282,asmbl_15283,asmbl_15285,asmbl_15286,asmbl_15287 // Exon Skipping and Retention # skipped_exon 6888065-6888716 (orient:-) max_ev_support = 1 # retained_exon 6888189-6888245 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6888189-6888245 asmbl_15276,asmbl_15278,asmbl_15279,asmbl_15280,asmbl_15281,asmbl_15282,asmbl_15283,asmbl_15286,asmbl_15287 scaffold_15 - intron_skips_exon 6888065-6888716 asmbl_15285 // Exon Skipping and Retention # skipped_exon 6883631-6884459 (orient:-) max_ev_support = 3 # retained_exon 6884075-6884143 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6884075-6884143 asmbl_15279,asmbl_15281,asmbl_15283,asmbl_15286 scaffold_15 - intron_skips_exon 6883631-6884459 asmbl_15276 // Exon Skipping and Retention # skipped_exon 6956898-6957812 (orient:-) max_ev_support = 1 # retained_exon 6957427-6957668 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957427-6957481,6957569-6957668 asmbl_15288 scaffold_15 - intron_skips_exon 6956898-6957812 asmbl_15293 // Exon Skipping and Retention # skipped_exon 6956898-6957426 (orient:-) max_ev_support = 2 # retained_exon 6957077-6957098 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957077-6957098 asmbl_15289 scaffold_15 - intron_skips_exon 6956898-6957426 asmbl_15288 // Exon Skipping and Retention # skipped_exon 6956898-6957133 (orient:-) max_ev_support = 2 # retained_exon 6957077-6957098 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957077-6957098 asmbl_15289 scaffold_15 - intron_skips_exon 6956898-6957133 asmbl_15290,asmbl_15291 // Exon Skipping and Retention # skipped_exon 6957099-6957426 (orient:-) max_ev_support = 2 # retained_exon 6957134-6957218 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 6957134-6957218 asmbl_15290,asmbl_15291 scaffold_15 - intron_skips_exon 6957099-6957426 asmbl_15289 // Exon Skipping and Retention # skipped_exon 7181904-7183428 (orient:-) max_ev_support = 2 # retained_exon 7182916-7182948 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 7182916-7182948 asmbl_15295 scaffold_15 - intron_skips_exon 7181904-7183428 asmbl_15294,asmbl_15297 // Exon Skipping and Retention # skipped_exon 7181904-7184176 (orient:-) max_ev_support = 2 # retained_exon 7183429-7183551 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 7183429-7183551 asmbl_15297 scaffold_15 - intron_skips_exon 7181904-7184176 asmbl_15296 // Retained and Spliced Intron # retained_intron 7254010-7254095 (orient:-) max_ev_support = 2 # spliced_intron 7254010-7254095 (orient:-) max_ev_support = 2 scaffold_15 - intron 7254010-7254095 asmbl_15306 scaffold_15 - retained_intron 7254010-7254095 asmbl_15307 // Retained and Spliced Intron # retained_intron 7437135-7437261 (orient:-) max_ev_support = 3 # spliced_intron 7437135-7437261 (orient:-) max_ev_support = 2 scaffold_15 - intron 7437135-7437261 asmbl_15319 scaffold_15 - retained_intron 7437135-7437261 asmbl_15318 // Retained and Spliced Intron # retained_intron 8039747-8039835 (orient:-) max_ev_support = 5 # spliced_intron 8039747-8039835 (orient:-) max_ev_support = 3 scaffold_15 - intron 8039747-8039835 asmbl_15347 scaffold_15 - retained_intron 8039747-8039835 asmbl_15346 // Retained and Spliced Intron # retained_intron 8039747-8040076 (orient:-) max_ev_support = 5 # spliced_intron 8039747-8040076 (orient:-) max_ev_support = 1 scaffold_15 - intron 8039747-8040076 asmbl_15348 scaffold_15 - retained_intron 8039747-8040076 asmbl_15346 // Retained and Spliced Intron # retained_intron 8039747-8042221 (orient:-) max_ev_support = 7 # spliced_intron 8039747-8042221 (orient:-) max_ev_support = 2 scaffold_15 - intron 8039747-8042221 asmbl_15349 scaffold_15 - retained_intron 8039747-8042221 asmbl_15346 // Exon Skipping and Retention # skipped_exon 8073277-8075917 (orient:-) max_ev_support = 2 # retained_exon 8074969-8075043 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 8074969-8075043 asmbl_15352 scaffold_15 - intron_skips_exon 8073277-8075917 asmbl_15353 // Retained and Spliced Intron # retained_intron 8290704-8290838 (orient:-) max_ev_support = 1 # spliced_intron 8290704-8290838 (orient:-) max_ev_support = 2 scaffold_15 - intron 8290704-8290838 asmbl_15356 scaffold_15 - retained_intron 8290704-8290838 asmbl_15357 // Retained and Spliced Intron # retained_intron 8364853-8364968 (orient:-) max_ev_support = 2 # spliced_intron 8364853-8364968 (orient:-) max_ev_support = 2 scaffold_15 - intron 8364853-8364968 asmbl_15358,asmbl_15360 scaffold_15 - retained_intron 8364853-8364968 asmbl_15359 // Retained and Spliced Intron # retained_intron 8365621-8365937 (orient:-) max_ev_support = 1 # spliced_intron 8365621-8365937 (orient:-) max_ev_support = 2 scaffold_15 - intron 8365621-8365937 asmbl_15358 scaffold_15 - retained_intron 8365621-8365937 asmbl_15360 // Retained and Spliced Intron # retained_intron 8628465-8629828 (orient:-) max_ev_support = 6 # spliced_intron 8628465-8629828 (orient:-) max_ev_support = 3 scaffold_15 - intron 8628465-8629828 asmbl_15370 scaffold_15 - retained_intron 8628465-8629828 asmbl_15369 // Retained and Spliced Intron # retained_intron 9004560-9004735 (orient:-) max_ev_support = 2 # spliced_intron 9004560-9004735 (orient:-) max_ev_support = 2 scaffold_15 - intron 9004560-9004735 asmbl_15385 scaffold_15 - retained_intron 9004560-9004735 asmbl_15386 // Retained and Spliced Intron # retained_intron 9573070-9573444 (orient:-) max_ev_support = 2 # spliced_intron 9573070-9573444 (orient:-) max_ev_support = 2 scaffold_15 - intron 9573070-9573444 asmbl_15404,asmbl_15405 scaffold_15 - retained_intron 9573070-9573444 asmbl_15406 // Exon Skipping and Retention # skipped_exon 9641313-9641824 (orient:-) max_ev_support = 1 # retained_exon 9641687-9641740 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 9641687-9641740 asmbl_15412,asmbl_15413 scaffold_15 - intron_skips_exon 9641313-9641824 asmbl_15411 // Exon Skipping and Retention # skipped_exon 9666417-9668414 (orient:-) max_ev_support = 2 # retained_exon 9667385-9667844 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 9667385-9667399,9667812-9667844 asmbl_15415 scaffold_15 - intron_skips_exon 9666417-9668414 asmbl_15414,asmbl_15416 // Retained and Spliced Intron # retained_intron 9732951-9733059 (orient:-) max_ev_support = 1 # spliced_intron 9732951-9733059 (orient:-) max_ev_support = 2 scaffold_15 - intron 9732951-9733059 asmbl_15425,asmbl_15427 scaffold_15 - retained_intron 9732951-9733059 asmbl_15428 // Retained and Spliced Intron # retained_intron 9854011-9854120 (orient:-) max_ev_support = 3 # spliced_intron 9854011-9854120 (orient:-) max_ev_support = 1 scaffold_15 - intron 9854011-9854120 asmbl_15436 scaffold_15 - retained_intron 9854011-9854120 asmbl_15433,asmbl_15434,asmbl_15435 // Exon Skipping and Retention # skipped_exon 10878095-10880861 (orient:-) max_ev_support = 2 # retained_exon 10880031-10880144 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 10880031-10880144 asmbl_15478 scaffold_15 - intron_skips_exon 10878095-10880861 asmbl_15479 // Exon Skipping and Retention # skipped_exon 11141169-11142116 (orient:-) max_ev_support = 1 # retained_exon 11141906-11141941 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 11141906-11141941 asmbl_15501,asmbl_15504,asmbl_15499 scaffold_15 - intron_skips_exon 11141169-11142116 asmbl_15502,asmbl_15503,asmbl_15500,asmbl_15505 // Exon Skipping and Retention # skipped_exon 11142283-11144388 (orient:-) max_ev_support = 1 # retained_exon 11143710-11143790 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 11143710-11143790 asmbl_15501,asmbl_15503 scaffold_15 - intron_skips_exon 11142283-11144388 asmbl_15499,asmbl_15502,asmbl_15504 // Retained and Spliced Intron # retained_intron 11402043-11402524 (orient:-) max_ev_support = 1 # spliced_intron 11402043-11402524 (orient:-) max_ev_support = 2 scaffold_15 - intron 11402043-11402524 asmbl_15512 scaffold_15 - retained_intron 11402043-11402524 asmbl_15511,asmbl_15515 // Retained and Spliced Intron # retained_intron 11402046-11402524 (orient:-) max_ev_support = 1 # spliced_intron 11402046-11402524 (orient:-) max_ev_support = 2 scaffold_15 - intron 11402046-11402524 asmbl_15510 scaffold_15 - retained_intron 11402046-11402524 asmbl_15511,asmbl_15515 // Retained and Spliced Intron # retained_intron 11562810-11563294 (orient:-) max_ev_support = 1 # spliced_intron 11562810-11563294 (orient:-) max_ev_support = 3 scaffold_15 - intron 11562810-11563294 asmbl_15538 scaffold_15 - retained_intron 11562810-11563294 asmbl_15539 // Retained and Spliced Intron # retained_intron 11728507-11728700 (orient:-) max_ev_support = 1 # spliced_intron 11728507-11728700 (orient:-) max_ev_support = 1 scaffold_15 - intron 11728507-11728700 asmbl_15547 scaffold_15 - retained_intron 11728507-11728700 asmbl_15546 // Retained and Spliced Intron # retained_intron 11940228-11941598 (orient:-) max_ev_support = 1 # spliced_intron 11940228-11941598 (orient:-) max_ev_support = 2 scaffold_15 - intron 11940228-11941598 asmbl_15555 scaffold_15 - retained_intron 11940228-11941598 asmbl_15558 // Retained and Spliced Intron # retained_intron 11941297-11941598 (orient:-) max_ev_support = 1 # spliced_intron 11941297-11941598 (orient:-) max_ev_support = 1 scaffold_15 - intron 11941297-11941598 asmbl_15556,asmbl_15557 scaffold_15 - retained_intron 11941297-11941598 asmbl_15558 // Retained and Spliced Intron # retained_intron 12000408-12000658 (orient:-) max_ev_support = 2 # spliced_intron 12000408-12000658 (orient:-) max_ev_support = 1 scaffold_15 - intron 12000408-12000658 asmbl_15567 scaffold_15 - retained_intron 12000408-12000658 asmbl_15566,asmbl_15568 // Retained and Spliced Intron # retained_intron 12000429-12000658 (orient:-) max_ev_support = 2 # spliced_intron 12000429-12000658 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000429-12000658 asmbl_15564,asmbl_15565 scaffold_15 - retained_intron 12000429-12000658 asmbl_15566,asmbl_15568 // Retained and Spliced Intron # retained_intron 12000469-12000658 (orient:-) max_ev_support = 2 # spliced_intron 12000469-12000658 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000469-12000658 asmbl_15563 scaffold_15 - retained_intron 12000469-12000658 asmbl_15566,asmbl_15568 // Retained and Spliced Intron # retained_intron 12000050-12000366 (orient:-) max_ev_support = 1 # spliced_intron 12000050-12000366 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000050-12000366 asmbl_15565 scaffold_15 - retained_intron 12000050-12000366 asmbl_15567,asmbl_15568 // Retained and Spliced Intron # retained_intron 12000050-12000403 (orient:-) max_ev_support = 1 # spliced_intron 12000050-12000403 (orient:-) max_ev_support = 3 scaffold_15 - intron 12000050-12000403 asmbl_15563,asmbl_15564,asmbl_15566 scaffold_15 - retained_intron 12000050-12000403 asmbl_15567,asmbl_15568 // Exon Skipping and Retention # skipped_exon 12008633-12009572 (orient:-) max_ev_support = 2 # retained_exon 12009315-12009379 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 12009315-12009379 asmbl_15570 scaffold_15 - intron_skips_exon 12008633-12009572 asmbl_15569 // Retained and Spliced Intron # retained_intron 12003651-12003789 (orient:-) max_ev_support = 2 # spliced_intron 12003651-12003789 (orient:-) max_ev_support = 2 scaffold_15 - intron 12003651-12003789 asmbl_15569,asmbl_15570 scaffold_15 - retained_intron 12003651-12003789 asmbl_15571,asmbl_15572 // Retained and Spliced Intron # retained_intron 12008633-12009314 (orient:-) max_ev_support = 1 # spliced_intron 12008633-12009314 (orient:-) max_ev_support = 2 scaffold_15 - intron 12008633-12009314 asmbl_15570 scaffold_15 - retained_intron 12008633-12009314 asmbl_15571,asmbl_15572 // Retained and Spliced Intron # retained_intron 12133093-12133392 (orient:-) max_ev_support = 1 # spliced_intron 12133093-12133392 (orient:-) max_ev_support = 2 scaffold_15 - intron 12133093-12133392 asmbl_15578 scaffold_15 - retained_intron 12133093-12133392 asmbl_15581 // Retained and Spliced Intron # retained_intron 12390490-12391005 (orient:-) max_ev_support = 2 # spliced_intron 12390490-12391005 (orient:-) max_ev_support = 2 scaffold_15 - intron 12390490-12391005 asmbl_15587,asmbl_15588 scaffold_15 - retained_intron 12390490-12391005 asmbl_15586 // Exon Skipping and Retention # skipped_exon 12390490-12391553 (orient:-) max_ev_support = 1 # retained_exon 12391006-12391047 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 12391006-12391047 asmbl_15588 scaffold_15 - intron_skips_exon 12390490-12391553 asmbl_15591,asmbl_15592 // Retained and Spliced Intron # retained_intron 12537084-12537192 (orient:-) max_ev_support = 1 # spliced_intron 12537084-12537192 (orient:-) max_ev_support = 2 scaffold_15 - intron 12537084-12537192 asmbl_15598 scaffold_15 - retained_intron 12537084-12537192 asmbl_15600 // Retained and Spliced Intron # retained_intron 12597273-12597384 (orient:-) max_ev_support = 2 # spliced_intron 12597273-12597384 (orient:-) max_ev_support = 3 scaffold_15 - intron 12597273-12597384 asmbl_15603,asmbl_15604,asmbl_15606 scaffold_15 - retained_intron 12597273-12597384 asmbl_15605,asmbl_15608 // Retained and Spliced Intron # retained_intron 12597437-12597600 (orient:-) max_ev_support = 2 # spliced_intron 12597437-12597600 (orient:-) max_ev_support = 3 scaffold_15 - intron 12597437-12597600 asmbl_15603,asmbl_15604,asmbl_15608 scaffold_15 - retained_intron 12597437-12597600 asmbl_15605,asmbl_15606 // Exon Skipping and Retention # skipped_exon 13558874-13561252 (orient:-) max_ev_support = 2 # retained_exon 13560493-13560666 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 13560493-13560666 asmbl_15659 scaffold_15 - intron_skips_exon 13558874-13561252 asmbl_15657,asmbl_15658 // Retained and Spliced Intron # retained_intron 13706834-13706990 (orient:-) max_ev_support = 5 # spliced_intron 13706834-13706990 (orient:-) max_ev_support = 1 scaffold_15 - intron 13706834-13706990 asmbl_15675 scaffold_15 - retained_intron 13706834-13706990 asmbl_15674 // Retained and Spliced Intron # retained_intron 13759939-13760410 (orient:-) max_ev_support = 3 # spliced_intron 13759939-13760410 (orient:-) max_ev_support = 1 scaffold_15 - intron 13759939-13760410 asmbl_15682 scaffold_15 - retained_intron 13759939-13760410 asmbl_15680 // Retained and Spliced Intron # retained_intron 13760201-13760410 (orient:-) max_ev_support = 3 # spliced_intron 13760201-13760410 (orient:-) max_ev_support = 2 scaffold_15 - intron 13760201-13760410 asmbl_15681,asmbl_15683,asmbl_15684 scaffold_15 - retained_intron 13760201-13760410 asmbl_15680 // Exon Skipping and Retention # skipped_exon 13812383-13814430 (orient:-) max_ev_support = 3 # retained_exon 13813532-13813573 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 13813532-13813573 asmbl_15692 scaffold_15 - intron_skips_exon 13812383-13814430 asmbl_15691 // Exon Skipping and Retention # skipped_exon 13834390-13836975 (orient:-) max_ev_support = 3 # retained_exon 13835383-13835403 (orient:-) max_ev_support = 3 scaffold_15 - retained_exons 13835383-13835403 asmbl_15696 scaffold_15 - intron_skips_exon 13834390-13836975 asmbl_15695 // Retained and Spliced Intron # retained_intron 13944525-13944639 (orient:-) max_ev_support = 2 # spliced_intron 13944525-13944639 (orient:-) max_ev_support = 2 scaffold_15 - intron 13944525-13944639 asmbl_15700,asmbl_15703 scaffold_15 - retained_intron 13944525-13944639 asmbl_15699,asmbl_15702 // Exon Skipping and Retention # skipped_exon 14324311-14324883 (orient:-) max_ev_support = 1 # retained_exon 14324366-14324440 (orient:-) max_ev_support = 1 scaffold_15 - retained_exons 14324366-14324440 asmbl_15728 scaffold_15 - intron_skips_exon 14324311-14324883 asmbl_15729 // Retained and Spliced Intron # retained_intron 14322902-14323125 (orient:-) max_ev_support = 1 # spliced_intron 14322902-14323125 (orient:-) max_ev_support = 1 scaffold_15 - intron 14322902-14323125 asmbl_15728 scaffold_15 - retained_intron 14322902-14323125 asmbl_15729,asmbl_15736 // Retained and Spliced Intron # retained_intron 14323219-14323986 (orient:-) max_ev_support = 1 # spliced_intron 14323219-14323986 (orient:-) max_ev_support = 2 scaffold_15 - intron 14323219-14323986 asmbl_15734 scaffold_15 - retained_intron 14323219-14323986 asmbl_15729,asmbl_15736 // Retained and Spliced Intron # retained_intron 14324311-14324883 (orient:-) max_ev_support = 2 # spliced_intron 14324311-14324883 (orient:-) max_ev_support = 1 scaffold_15 - intron 14324311-14324883 asmbl_15729 scaffold_15 - retained_intron 14324311-14324883 asmbl_15734,asmbl_15736 // Retained and Spliced Intron # retained_intron 14324441-14324883 (orient:-) max_ev_support = 2 # spliced_intron 14324441-14324883 (orient:-) max_ev_support = 1 scaffold_15 - intron 14324441-14324883 asmbl_15728 scaffold_15 - retained_intron 14324441-14324883 asmbl_15734,asmbl_15735,asmbl_15736 // Retained and Spliced Intron # retained_intron 14323219-14324365 (orient:-) max_ev_support = 1 # spliced_intron 14323219-14324365 (orient:-) max_ev_support = 2 scaffold_15 - intron 14323219-14324365 asmbl_15728,asmbl_15735 scaffold_15 - retained_intron 14323219-14324365 asmbl_15736 // Exon Skipping and Retention # skipped_exon 14633432-14633944 (orient:-) max_ev_support = 2 # retained_exon 14633628-14633734 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 14633628-14633734 asmbl_15749,asmbl_15753 scaffold_15 - intron_skips_exon 14633432-14633944 asmbl_15751 // Exon Skipping and Retention # skipped_exon 14633432-14634502 (orient:-) max_ev_support = 2 # retained_exon 14633628-14634042 (orient:-) max_ev_support = 2 scaffold_15 - retained_exons 14633628-14633734,14633892-14634042 asmbl_15749,asmbl_15753 scaffold_15 - intron_skips_exon 14633432-14634502 asmbl_15750 // Retained and Spliced Intron # retained_intron 15207429-15207667 (orient:-) max_ev_support = 1 # spliced_intron 15207429-15207667 (orient:-) max_ev_support = 2 scaffold_15 - intron 15207429-15207667 asmbl_15777 scaffold_15 - retained_intron 15207429-15207667 asmbl_15778 // Retained and Spliced Intron # retained_intron 15416433-15416546 (orient:-) max_ev_support = 1 # spliced_intron 15416433-15416546 (orient:-) max_ev_support = 2 scaffold_15 - intron 15416433-15416546 asmbl_15794 scaffold_15 - retained_intron 15416433-15416546 asmbl_15795 // Retained and Spliced Intron # retained_intron 15416820-15416897 (orient:-) max_ev_support = 1 # spliced_intron 15416820-15416897 (orient:-) max_ev_support = 2 scaffold_15 - intron 15416820-15416897 asmbl_15794 scaffold_15 - retained_intron 15416820-15416897 asmbl_15795 // Retained and Spliced Intron # retained_intron 15434376-15435512 (orient:-) max_ev_support = 5 # spliced_intron 15434376-15435512 (orient:-) max_ev_support = 2 scaffold_15 - intron 15434376-15435512 asmbl_15799,asmbl_15800 scaffold_15 - retained_intron 15434376-15435512 asmbl_15797,asmbl_15798 // Retained and Spliced Intron # retained_intron 15435691-15435799 (orient:-) max_ev_support = 3 # spliced_intron 15435691-15435799 (orient:-) max_ev_support = 1 scaffold_15 - intron 15435691-15435799 asmbl_15798 scaffold_15 - retained_intron 15435691-15435799 asmbl_15797,asmbl_15799,asmbl_15800,asmbl_15801,asmbl_15802 // Retained and Spliced Intron # retained_intron 15523267-15523823 (orient:-) max_ev_support = 3 # spliced_intron 15523267-15523823 (orient:-) max_ev_support = 2 scaffold_15 - intron 15523267-15523823 asmbl_15806 scaffold_15 - retained_intron 15523267-15523823 asmbl_15805 // Retained and Spliced Intron # retained_intron 15906139-15906230 (orient:-) max_ev_support = 2 # spliced_intron 15906139-15906230 (orient:-) max_ev_support = 3 scaffold_15 - intron 15906139-15906230 asmbl_15822,asmbl_15824,asmbl_15825,asmbl_15826,asmbl_15827 scaffold_15 - retained_intron 15906139-15906230 asmbl_15823 // Retained and Spliced Intron # retained_intron 15908373-15908721 (orient:-) max_ev_support = 2 # spliced_intron 15908373-15908721 (orient:-) max_ev_support = 3 scaffold_15 - intron 15908373-15908721 asmbl_15822,asmbl_15823,asmbl_15825,asmbl_15826,asmbl_15827 scaffold_15 - retained_intron 15908373-15908721 asmbl_15824 // Retained and Spliced Intron # retained_intron 15907550-15907932 (orient:-) max_ev_support = 2 # spliced_intron 15907550-15907932 (orient:-) max_ev_support = 3 scaffold_15 - intron 15907550-15907932 asmbl_15822,asmbl_15823,asmbl_15824,asmbl_15826 scaffold_15 - retained_intron 15907550-15907932 asmbl_15825,asmbl_15827 // Retained and Spliced Intron # retained_intron 15906565-15906998 (orient:-) max_ev_support = 2 # spliced_intron 15906565-15906998 (orient:-) max_ev_support = 3 scaffold_15 - intron 15906565-15906998 asmbl_15822,asmbl_15823,asmbl_15824,asmbl_15825 scaffold_15 - retained_intron 15906565-15906998 asmbl_15826,asmbl_15827 // Retained and Spliced Intron # retained_intron 16266207-16266369 (orient:-) max_ev_support = 2 # spliced_intron 16266207-16266369 (orient:-) max_ev_support = 2 scaffold_15 - intron 16266207-16266369 asmbl_15836 scaffold_15 - retained_intron 16266207-16266369 asmbl_15835 // Retained and Spliced Intron # retained_intron 16366344-16366420 (orient:-) max_ev_support = 2 # spliced_intron 16366344-16366420 (orient:-) max_ev_support = 3 scaffold_15 - intron 16366344-16366420 asmbl_15846 scaffold_15 - retained_intron 16366344-16366420 asmbl_15847,asmbl_15849 // Exon Skipping and Retention # skipped_exon 101-1310 (orient:-) max_ev_support = 1 # retained_exon 333-478 (orient:-) max_ev_support = 1 scaffold_1555 - retained_exons 333-478 asmbl_15980 scaffold_1555 - intron_skips_exon 101-1310 asmbl_15981 // Exon Skipping and Retention # skipped_exon 479-1785 (orient:-) max_ev_support = 1 # retained_exon 1311-1456 (orient:-) max_ev_support = 1 scaffold_1555 - retained_exons 1311-1456 asmbl_15981 scaffold_1555 - intron_skips_exon 479-1785 asmbl_15980 // Retained and Spliced Intron # retained_intron 151929-152211 (orient:-) max_ev_support = 2 # spliced_intron 151929-152211 (orient:-) max_ev_support = 2 scaffold_16 - intron 151929-152211 asmbl_16005,asmbl_16009,asmbl_16011 scaffold_16 - retained_intron 151929-152211 asmbl_16002 // Retained and Spliced Intron # retained_intron 154458-154650 (orient:-) max_ev_support = 1 # spliced_intron 154458-154650 (orient:-) max_ev_support = 2 scaffold_16 - intron 154458-154650 asmbl_16005 scaffold_16 - retained_intron 154458-154650 asmbl_16011 // Retained and Spliced Intron # retained_intron 293907-294060 (orient:-) max_ev_support = 2 # spliced_intron 293907-294060 (orient:-) max_ev_support = 3 scaffold_16 - intron 293907-294060 asmbl_16014 scaffold_16 - retained_intron 293907-294060 asmbl_16016 // Exon Skipping and Retention # skipped_exon 325094-325389 (orient:-) max_ev_support = 1 # retained_exon 325178-325305 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 325178-325305 asmbl_16025,asmbl_16027,asmbl_16028,asmbl_16029 scaffold_16 - intron_skips_exon 325094-325389 asmbl_16030 // Exon Skipping and Retention # skipped_exon 325505-325750 (orient:-) max_ev_support = 1 # retained_exon 325601-325669 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 325601-325669 asmbl_16025,asmbl_16026 scaffold_16 - intron_skips_exon 325505-325750 asmbl_16027,asmbl_16028,asmbl_16029,asmbl_16030 // Retained and Spliced Intron # retained_intron 325094-325177 (orient:-) max_ev_support = 1 # spliced_intron 325094-325177 (orient:-) max_ev_support = 1 scaffold_16 - intron 325094-325177 asmbl_16025,asmbl_16027,asmbl_16028,asmbl_16029 scaffold_16 - retained_intron 325094-325177 asmbl_16026 // Retained and Spliced Intron # retained_intron 327833-327983 (orient:-) max_ev_support = 1 # spliced_intron 327833-327983 (orient:-) max_ev_support = 2 scaffold_16 - intron 327833-327983 asmbl_16025,asmbl_16027 scaffold_16 - retained_intron 327833-327983 asmbl_16026,asmbl_16028,asmbl_16029,asmbl_16030 // Retained and Spliced Intron # retained_intron 325937-326065 (orient:-) max_ev_support = 1 # spliced_intron 325937-326065 (orient:-) max_ev_support = 2 scaffold_16 - intron 325937-326065 asmbl_16025,asmbl_16026,asmbl_16029,asmbl_16030 scaffold_16 - retained_intron 325937-326065 asmbl_16027,asmbl_16028 // Retained and Spliced Intron # retained_intron 411662-411800 (orient:-) max_ev_support = 1 # spliced_intron 411662-411800 (orient:-) max_ev_support = 2 scaffold_16 - intron 411662-411800 asmbl_16033,asmbl_16035 scaffold_16 - retained_intron 411662-411800 asmbl_16034 // Exon Skipping and Retention # skipped_exon 440746-442564 (orient:-) max_ev_support = 1 # retained_exon 441815-441991 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 441815-441991 asmbl_16038 scaffold_16 - intron_skips_exon 440746-442564 asmbl_16043 // Retained and Spliced Intron # retained_intron 429984-430051 (orient:-) max_ev_support = 1 # spliced_intron 429984-430051 (orient:-) max_ev_support = 1 scaffold_16 - intron 429984-430051 asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16047,asmbl_16048,asmbl_16049,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053,asmbl_16054 scaffold_16 - retained_intron 429984-430051 asmbl_16041,asmbl_16046 // Retained and Spliced Intron # retained_intron 430142-430213 (orient:-) max_ev_support = 1 # spliced_intron 430142-430213 (orient:-) max_ev_support = 1 scaffold_16 - intron 430142-430213 asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053,asmbl_16054 scaffold_16 - retained_intron 430142-430213 asmbl_16041,asmbl_16047,asmbl_16048,asmbl_16049 // Exon Skipping and Retention # skipped_exon 442634-443818 (orient:-) max_ev_support = 1 # retained_exon 442822-442866 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 442822-442866 asmbl_16042 scaffold_16 - intron_skips_exon 442634-443818 asmbl_16038,asmbl_16043 // Exon Skipping and Retention # skipped_exon 432537-433108 (orient:-) max_ev_support = 1 # retained_exon 432654-432695 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 432654-432695 asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16047,asmbl_16048,asmbl_16050,asmbl_16051,asmbl_16052,asmbl_16053 scaffold_16 - intron_skips_exon 432537-433108 asmbl_16054 // Exon Skipping and Retention # skipped_exon 439724-441814 (orient:-) max_ev_support = 1 # retained_exon 440701-440745 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 440701-440745 asmbl_16043 scaffold_16 - intron_skips_exon 439724-441814 asmbl_16038 // Retained and Spliced Intron # retained_intron 433763-434014 (orient:-) max_ev_support = 1 # spliced_intron 433763-434014 (orient:-) max_ev_support = 1 scaffold_16 - intron 433763-434014 asmbl_16047 scaffold_16 - retained_intron 433763-434014 asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051 // Retained and Spliced Intron # retained_intron 434057-434518 (orient:-) max_ev_support = 1 # spliced_intron 434057-434518 (orient:-) max_ev_support = 1 scaffold_16 - intron 434057-434518 asmbl_16043,asmbl_16047,asmbl_16048 scaffold_16 - retained_intron 434057-434518 asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16050,asmbl_16051 // Retained and Spliced Intron # retained_intron 433622-433712 (orient:-) max_ev_support = 1 # spliced_intron 433622-433712 (orient:-) max_ev_support = 1 scaffold_16 - intron 433622-433712 asmbl_16044,asmbl_16045,asmbl_16047 scaffold_16 - retained_intron 433622-433712 asmbl_16046,asmbl_16050,asmbl_16051,asmbl_16052 // Retained and Spliced Intron # retained_intron 433622-434014 (orient:-) max_ev_support = 1 # spliced_intron 433622-434014 (orient:-) max_ev_support = 1 scaffold_16 - intron 433622-434014 asmbl_16043,asmbl_16048,asmbl_16053 scaffold_16 - retained_intron 433622-434014 asmbl_16046,asmbl_16050,asmbl_16051 // Exon Skipping and Retention # skipped_exon 433622-434014 (orient:-) max_ev_support = 1 # retained_exon 433713-433762 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 433713-433762 asmbl_16047 scaffold_16 - intron_skips_exon 433622-434014 asmbl_16043,asmbl_16048,asmbl_16053 // Retained and Spliced Intron # retained_intron 433381-433451 (orient:-) max_ev_support = 1 # spliced_intron 433381-433451 (orient:-) max_ev_support = 1 scaffold_16 - intron 433381-433451 asmbl_16043,asmbl_16044,asmbl_16045,asmbl_16046,asmbl_16047,asmbl_16048,asmbl_16050,asmbl_16051 scaffold_16 - retained_intron 433381-433451 asmbl_16052,asmbl_16053 // Retained and Spliced Intron # retained_intron 743885-744041 (orient:-) max_ev_support = 2 # spliced_intron 743885-744041 (orient:-) max_ev_support = 2 scaffold_16 - intron 743885-744041 asmbl_16066,asmbl_16068,asmbl_16069,asmbl_16070,asmbl_16071,asmbl_16072 scaffold_16 - retained_intron 743885-744041 asmbl_16065 // Exon Skipping and Retention # skipped_exon 744159-744656 (orient:-) max_ev_support = 1 # retained_exon 744376-744435 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 744376-744435 asmbl_16066,asmbl_16070 scaffold_16 - intron_skips_exon 744159-744656 asmbl_16069,asmbl_16072 // Retained and Spliced Intron # retained_intron 744159-744375 (orient:-) max_ev_support = 1 # spliced_intron 744159-744375 (orient:-) max_ev_support = 2 scaffold_16 - intron 744159-744375 asmbl_16066,asmbl_16070 scaffold_16 - retained_intron 744159-744375 asmbl_16068,asmbl_16071 // Retained and Spliced Intron # retained_intron 744159-744656 (orient:-) max_ev_support = 1 # spliced_intron 744159-744656 (orient:-) max_ev_support = 1 scaffold_16 - intron 744159-744656 asmbl_16069,asmbl_16072 scaffold_16 - retained_intron 744159-744656 asmbl_16068,asmbl_16071 // Retained and Spliced Intron # retained_intron 744436-744656 (orient:-) max_ev_support = 1 # spliced_intron 744436-744656 (orient:-) max_ev_support = 2 scaffold_16 - intron 744436-744656 asmbl_16066,asmbl_16070 scaffold_16 - retained_intron 744436-744656 asmbl_16068,asmbl_16071 // Retained and Spliced Intron # retained_intron 809175-809692 (orient:-) max_ev_support = 1 # spliced_intron 809175-809692 (orient:-) max_ev_support = 2 scaffold_16 - intron 809175-809692 asmbl_16077,asmbl_16079,asmbl_16080,asmbl_16082 scaffold_16 - retained_intron 809175-809692 asmbl_16078,asmbl_16081,asmbl_16083 // Retained and Spliced Intron # retained_intron 810150-810259 (orient:-) max_ev_support = 1 # spliced_intron 810150-810259 (orient:-) max_ev_support = 1 scaffold_16 - intron 810150-810259 asmbl_16078,asmbl_16080,asmbl_16082 scaffold_16 - retained_intron 810150-810259 asmbl_16079,asmbl_16083 // Retained and Spliced Intron # retained_intron 810169-810259 (orient:-) max_ev_support = 1 # spliced_intron 810169-810259 (orient:-) max_ev_support = 2 scaffold_16 - intron 810169-810259 asmbl_16077,asmbl_16081 scaffold_16 - retained_intron 810169-810259 asmbl_16079,asmbl_16083 // Retained and Spliced Intron # retained_intron 810291-810378 (orient:-) max_ev_support = 1 # spliced_intron 810291-810378 (orient:-) max_ev_support = 2 scaffold_16 - intron 810291-810378 asmbl_16077,asmbl_16078,asmbl_16080,asmbl_16081 scaffold_16 - retained_intron 810291-810378 asmbl_16079,asmbl_16082,asmbl_16083 // Retained and Spliced Intron # retained_intron 809774-810034 (orient:-) max_ev_support = 1 # spliced_intron 809774-810034 (orient:-) max_ev_support = 2 scaffold_16 - intron 809774-810034 asmbl_16077,asmbl_16078,asmbl_16079,asmbl_16080,asmbl_16081,asmbl_16082 scaffold_16 - retained_intron 809774-810034 asmbl_16083 // Retained and Spliced Intron # retained_intron 1236351-1236851 (orient:-) max_ev_support = 1 # spliced_intron 1236351-1236851 (orient:-) max_ev_support = 2 scaffold_16 - intron 1236351-1236851 asmbl_16101,asmbl_16103 scaffold_16 - retained_intron 1236351-1236851 asmbl_16102 // Retained and Spliced Intron # retained_intron 1237437-1237543 (orient:-) max_ev_support = 1 # spliced_intron 1237437-1237543 (orient:-) max_ev_support = 2 scaffold_16 - intron 1237437-1237543 asmbl_16101,asmbl_16102 scaffold_16 - retained_intron 1237437-1237543 asmbl_16103 // Retained and Spliced Intron # retained_intron 1237655-1237855 (orient:-) max_ev_support = 1 # spliced_intron 1237655-1237855 (orient:-) max_ev_support = 2 scaffold_16 - intron 1237655-1237855 asmbl_16101,asmbl_16102 scaffold_16 - retained_intron 1237655-1237855 asmbl_16103 // Exon Skipping and Retention # skipped_exon 2336883-2337733 (orient:-) max_ev_support = 1 # retained_exon 2337297-2337340 (orient:-) max_ev_support = 3 scaffold_16 - retained_exons 2337297-2337340 asmbl_16133 scaffold_16 - intron_skips_exon 2336883-2337733 asmbl_16134 // Retained and Spliced Intron # retained_intron 2386305-2386343 (orient:-) max_ev_support = 2 # spliced_intron 2386305-2386343 (orient:-) max_ev_support = 1 scaffold_16 - intron 2386305-2386343 asmbl_16137 scaffold_16 - retained_intron 2386305-2386343 asmbl_16135 // Retained and Spliced Intron # retained_intron 2386305-2386382 (orient:-) max_ev_support = 2 # spliced_intron 2386305-2386382 (orient:-) max_ev_support = 1 scaffold_16 - intron 2386305-2386382 asmbl_16136 scaffold_16 - retained_intron 2386305-2386382 asmbl_16135 // Retained and Spliced Intron # retained_intron 3563930-3564366 (orient:-) max_ev_support = 2 # spliced_intron 3563930-3564366 (orient:-) max_ev_support = 2 scaffold_16 - intron 3563930-3564366 asmbl_16154 scaffold_16 - retained_intron 3563930-3564366 asmbl_16155,asmbl_16156 // Retained and Spliced Intron # retained_intron 3564452-3564605 (orient:-) max_ev_support = 2 # spliced_intron 3564452-3564605 (orient:-) max_ev_support = 2 scaffold_16 - intron 3564452-3564605 asmbl_16154 scaffold_16 - retained_intron 3564452-3564605 asmbl_16155,asmbl_16156 // Exon Skipping and Retention # skipped_exon 3710573-3711063 (orient:-) max_ev_support = 2 # retained_exon 3710861-3710953 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 3710861-3710953 asmbl_16167 scaffold_16 - intron_skips_exon 3710573-3711063 asmbl_16166 // Retained and Spliced Intron # retained_intron 3821260-3821374 (orient:-) max_ev_support = 3 # spliced_intron 3821260-3821374 (orient:-) max_ev_support = 2 scaffold_16 - intron 3821260-3821374 asmbl_16175 scaffold_16 - retained_intron 3821260-3821374 asmbl_16174 // Retained and Spliced Intron # retained_intron 4017628-4017730 (orient:-) max_ev_support = 1 # spliced_intron 4017628-4017730 (orient:-) max_ev_support = 2 scaffold_16 - intron 4017628-4017730 asmbl_16205,asmbl_16207 scaffold_16 - retained_intron 4017628-4017730 asmbl_16206 // Retained and Spliced Intron # retained_intron 4062380-4062655 (orient:-) max_ev_support = 2 # spliced_intron 4062380-4062655 (orient:-) max_ev_support = 2 scaffold_16 - intron 4062380-4062655 asmbl_16218,asmbl_16220,asmbl_16221 scaffold_16 - retained_intron 4062380-4062655 asmbl_16219 // Retained and Spliced Intron # retained_intron 4597484-4597636 (orient:-) max_ev_support = 1 # spliced_intron 4597484-4597636 (orient:-) max_ev_support = 2 scaffold_16 - intron 4597484-4597636 asmbl_16237 scaffold_16 - retained_intron 4597484-4597636 asmbl_16238 // Exon Skipping and Retention # skipped_exon 5390548-5391466 (orient:-) max_ev_support = 1 # retained_exon 5391350-5391376 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 5391350-5391376 asmbl_16266,asmbl_16269 scaffold_16 - intron_skips_exon 5390548-5391466 asmbl_16267,asmbl_16268 // Retained and Spliced Intron # retained_intron 5445512-5445763 (orient:-) max_ev_support = 2 # spliced_intron 5445512-5445763 (orient:-) max_ev_support = 3 scaffold_16 - intron 5445512-5445763 asmbl_16277 scaffold_16 - retained_intron 5445512-5445763 asmbl_16278 // Retained and Spliced Intron # retained_intron 5488508-5488595 (orient:-) max_ev_support = 3 # spliced_intron 5488508-5488595 (orient:-) max_ev_support = 3 scaffold_16 - intron 5488508-5488595 asmbl_16283 scaffold_16 - retained_intron 5488508-5488595 asmbl_16282 // Retained and Spliced Intron # retained_intron 5487668-5488014 (orient:-) max_ev_support = 2 # spliced_intron 5487668-5488014 (orient:-) max_ev_support = 3 scaffold_16 - intron 5487668-5488014 asmbl_16282,asmbl_16283 scaffold_16 - retained_intron 5487668-5488014 asmbl_16284 // Retained and Spliced Intron # retained_intron 6137953-6138100 (orient:-) max_ev_support = 1 # spliced_intron 6137953-6138100 (orient:-) max_ev_support = 2 scaffold_16 - intron 6137953-6138100 asmbl_16317 scaffold_16 - retained_intron 6137953-6138100 asmbl_16320 // Retained and Spliced Intron # retained_intron 6138194-6138347 (orient:-) max_ev_support = 1 # spliced_intron 6138194-6138347 (orient:-) max_ev_support = 2 scaffold_16 - intron 6138194-6138347 asmbl_16317 scaffold_16 - retained_intron 6138194-6138347 asmbl_16320 // Exon Skipping and Retention # skipped_exon 6203129-6204131 (orient:-) max_ev_support = 1 # retained_exon 6203811-6203991 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 6203811-6203991 asmbl_16325 scaffold_16 - intron_skips_exon 6203129-6204131 asmbl_16324 // Retained and Spliced Intron # retained_intron 6216174-6216261 (orient:-) max_ev_support = 1 # spliced_intron 6216174-6216261 (orient:-) max_ev_support = 2 scaffold_16 - intron 6216174-6216261 asmbl_16328 scaffold_16 - retained_intron 6216174-6216261 asmbl_16329 // Retained and Spliced Intron # retained_intron 6232211-6232250 (orient:-) max_ev_support = 1 # spliced_intron 6232211-6232250 (orient:-) max_ev_support = 1 scaffold_16 - intron 6232211-6232250 asmbl_16331 scaffold_16 - retained_intron 6232211-6232250 asmbl_16332 // Retained and Spliced Intron # retained_intron 7216868-7217206 (orient:-) max_ev_support = 4 # spliced_intron 7216868-7217206 (orient:-) max_ev_support = 1 scaffold_16 - intron 7216868-7217206 asmbl_16353,asmbl_16356 scaffold_16 - retained_intron 7216868-7217206 asmbl_16343,asmbl_16344,asmbl_16345,asmbl_16346,asmbl_16347 // Exon Skipping and Retention # skipped_exon 7217364-7218215 (orient:-) max_ev_support = 1 # retained_exon 7217977-7217997 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7217977-7217997 asmbl_16344,asmbl_16347,asmbl_16353,asmbl_16356 scaffold_16 - intron_skips_exon 7217364-7218215 asmbl_16345,asmbl_16346 // Exon Skipping and Retention # skipped_exon 7227132-7228890 (orient:-) max_ev_support = 1 # retained_exon 7227816-7228463 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7227816-7227878,7228383-7228463 asmbl_16344,asmbl_16347 scaffold_16 - intron_skips_exon 7227132-7228890 asmbl_16346,asmbl_16355 // Exon Skipping and Retention # skipped_exon 7228464-7230994 (orient:-) max_ev_support = 1 # retained_exon 7228891-7228941 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7228891-7228941 asmbl_16344,asmbl_16346,asmbl_16355 scaffold_16 - intron_skips_exon 7228464-7230994 asmbl_16347 // Exon Skipping and Retention # skipped_exon 7235994-7236929 (orient:-) max_ev_support = 1 # retained_exon 7236607-7236702 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7236607-7236702 asmbl_16344,asmbl_16346,asmbl_16347,asmbl_16350 scaffold_16 - intron_skips_exon 7235994-7236929 asmbl_16355 // Exon Skipping and Retention # skipped_exon 7240374-7243239 (orient:-) max_ev_support = 1 # retained_exon 7241550-7241633 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7241550-7241633 asmbl_16346 scaffold_16 - intron_skips_exon 7240374-7243239 asmbl_16344,asmbl_16347,asmbl_16350,asmbl_16355 // Exon Skipping and Retention # skipped_exon 7234374-7235710 (orient:-) max_ev_support = 1 # retained_exon 7235244-7235324 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 7235244-7235324 asmbl_16347,asmbl_16355 scaffold_16 - intron_skips_exon 7234374-7235710 asmbl_16344,asmbl_16346,asmbl_16350 // Retained and Spliced Intron # retained_intron 7540673-7540805 (orient:-) max_ev_support = 1 # spliced_intron 7540673-7540805 (orient:-) max_ev_support = 2 scaffold_16 - intron 7540673-7540805 asmbl_16361 scaffold_16 - retained_intron 7540673-7540805 asmbl_16362 // Retained and Spliced Intron # retained_intron 7702281-7702690 (orient:-) max_ev_support = 1 # spliced_intron 7702281-7702690 (orient:-) max_ev_support = 2 scaffold_16 - intron 7702281-7702690 asmbl_16369,asmbl_16370 scaffold_16 - retained_intron 7702281-7702690 asmbl_16371 // Retained and Spliced Intron # retained_intron 8070830-8070976 (orient:-) max_ev_support = 2 # spliced_intron 8070830-8070976 (orient:-) max_ev_support = 2 scaffold_16 - intron 8070830-8070976 asmbl_16401 scaffold_16 - retained_intron 8070830-8070976 asmbl_16402 // Retained and Spliced Intron # retained_intron 8086575-8086765 (orient:-) max_ev_support = 2 # spliced_intron 8086575-8086765 (orient:-) max_ev_support = 3 scaffold_16 - intron 8086575-8086765 asmbl_16404,asmbl_16405 scaffold_16 - retained_intron 8086575-8086765 asmbl_16407 // Retained and Spliced Intron # retained_intron 8088050-8088183 (orient:-) max_ev_support = 2 # spliced_intron 8088050-8088183 (orient:-) max_ev_support = 2 scaffold_16 - intron 8088050-8088183 asmbl_16404,asmbl_16405,asmbl_16410 scaffold_16 - retained_intron 8088050-8088183 asmbl_16408 // Retained and Spliced Intron # retained_intron 8663515-8663601 (orient:-) max_ev_support = 1 # spliced_intron 8663515-8663601 (orient:-) max_ev_support = 1 scaffold_16 - intron 8663515-8663601 asmbl_16427 scaffold_16 - retained_intron 8663515-8663601 asmbl_16428 // Exon Skipping and Retention # skipped_exon 8711335-8712234 (orient:-) max_ev_support = 2 # retained_exon 8711878-8711984 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 8711878-8711984 asmbl_16434,asmbl_16435 scaffold_16 - intron_skips_exon 8711335-8712234 asmbl_16432,asmbl_16433 // Retained and Spliced Intron # retained_intron 8875480-8875517 (orient:-) max_ev_support = 2 # spliced_intron 8875480-8875517 (orient:-) max_ev_support = 1 scaffold_16 - intron 8875480-8875517 asmbl_16441 scaffold_16 - retained_intron 8875480-8875517 asmbl_16440 // Exon Skipping and Retention # skipped_exon 9625301-9625822 (orient:-) max_ev_support = 2 # retained_exon 9625470-9625484 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 9625470-9625484 asmbl_16468 scaffold_16 - intron_skips_exon 9625301-9625822 asmbl_16469 // Exon Skipping and Retention # skipped_exon 10976248-10977481 (orient:-) max_ev_support = 1 # retained_exon 10977144-10977215 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 10977144-10977215 asmbl_16499 scaffold_16 - intron_skips_exon 10976248-10977481 asmbl_16500 // Exon Skipping and Retention # skipped_exon 10972053-10973639 (orient:-) max_ev_support = 2 # retained_exon 10972865-10972915 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 10972865-10972915 asmbl_16501 scaffold_16 - intron_skips_exon 10972053-10973639 asmbl_16499,asmbl_16500,asmbl_16502 // Retained and Spliced Intron # retained_intron 11596511-11596915 (orient:-) max_ev_support = 3 # spliced_intron 11596511-11596915 (orient:-) max_ev_support = 1 scaffold_16 - intron 11596511-11596915 asmbl_16530 scaffold_16 - retained_intron 11596511-11596915 asmbl_16529 // Exon Skipping and Retention # skipped_exon 12022195-12022852 (orient:-) max_ev_support = 2 # retained_exon 12022267-12022318 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 12022267-12022318 asmbl_16562 scaffold_16 - intron_skips_exon 12022195-12022852 asmbl_16561 // Exon Skipping and Retention # skipped_exon 12022195-12022875 (orient:-) max_ev_support = 1 # retained_exon 12022267-12022318 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 12022267-12022318 asmbl_16562 scaffold_16 - intron_skips_exon 12022195-12022875 asmbl_16563 // Retained and Spliced Intron # retained_intron 12642114-12642264 (orient:-) max_ev_support = 2 # spliced_intron 12642114-12642264 (orient:-) max_ev_support = 2 scaffold_16 - intron 12642114-12642264 asmbl_16577 scaffold_16 - retained_intron 12642114-12642264 asmbl_16576 // Exon Skipping and Retention # skipped_exon 13948602-13949816 (orient:-) max_ev_support = 1 # retained_exon 13948691-13948919 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 13948691-13948747,13948859-13948919 asmbl_16598,asmbl_16600 scaffold_16 - intron_skips_exon 13948602-13949816 asmbl_16599 // Exon Skipping and Retention # skipped_exon 14188298-14190333 (orient:-) max_ev_support = 2 # retained_exon 14189380-14189394 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 14189380-14189394 asmbl_16618,asmbl_16620 scaffold_16 - intron_skips_exon 14188298-14190333 asmbl_16619 // Exon Skipping and Retention # skipped_exon 14190504-14192190 (orient:-) max_ev_support = 2 # retained_exon 14191268-14191387 (orient:-) max_ev_support = 2 scaffold_16 - retained_exons 14191268-14191387 asmbl_16619,asmbl_16620 scaffold_16 - intron_skips_exon 14190504-14192190 asmbl_16618 // Retained and Spliced Intron # retained_intron 14510761-14510867 (orient:-) max_ev_support = 3 # spliced_intron 14510761-14510867 (orient:-) max_ev_support = 2 scaffold_16 - intron 14510761-14510867 asmbl_16628,asmbl_16629,asmbl_16630,asmbl_16631 scaffold_16 - retained_intron 14510761-14510867 asmbl_16627 // Retained and Spliced Intron # retained_intron 14510973-14511105 (orient:-) max_ev_support = 2 # spliced_intron 14510973-14511105 (orient:-) max_ev_support = 2 scaffold_16 - intron 14510973-14511105 asmbl_16628,asmbl_16629,asmbl_16630,asmbl_16631 scaffold_16 - retained_intron 14510973-14511105 asmbl_16627 // Retained and Spliced Intron # retained_intron 14510356-14510447 (orient:-) max_ev_support = 1 # spliced_intron 14510356-14510447 (orient:-) max_ev_support = 2 scaffold_16 - intron 14510356-14510447 asmbl_16627,asmbl_16628,asmbl_16630,asmbl_16631 scaffold_16 - retained_intron 14510356-14510447 asmbl_16629 // Retained and Spliced Intron # retained_intron 14512399-14512482 (orient:-) max_ev_support = 1 # spliced_intron 14512399-14512482 (orient:-) max_ev_support = 2 scaffold_16 - intron 14512399-14512482 asmbl_16628,asmbl_16629,asmbl_16631 scaffold_16 - retained_intron 14512399-14512482 asmbl_16630 // Retained and Spliced Intron # retained_intron 14513223-14513295 (orient:-) max_ev_support = 1 # spliced_intron 14513223-14513295 (orient:-) max_ev_support = 2 scaffold_16 - intron 14513223-14513295 asmbl_16628,asmbl_16629 scaffold_16 - retained_intron 14513223-14513295 asmbl_16631 // Exon Skipping and Retention # skipped_exon 14544410-14546401 (orient:-) max_ev_support = 1 # retained_exon 14546156-14546279 (orient:-) max_ev_support = 3 scaffold_16 - retained_exons 14546156-14546279 asmbl_16641 scaffold_16 - intron_skips_exon 14544410-14546401 asmbl_16642 // Exon Skipping and Retention # skipped_exon 14544204-14546155 (orient:-) max_ev_support = 1 # retained_exon 14544286-14544409 (orient:-) max_ev_support = 1 scaffold_16 - retained_exons 14544286-14544409 asmbl_16642 scaffold_16 - intron_skips_exon 14544204-14546155 asmbl_16641 // Retained and Spliced Intron # retained_intron 14556348-14556439 (orient:-) max_ev_support = 1 # spliced_intron 14556348-14556439 (orient:-) max_ev_support = 1 scaffold_16 - intron 14556348-14556439 asmbl_16644 scaffold_16 - retained_intron 14556348-14556439 asmbl_16645 // Retained and Spliced Intron # retained_intron 14560038-14560115 (orient:-) max_ev_support = 2 # spliced_intron 14560038-14560115 (orient:-) max_ev_support = 3 scaffold_16 - intron 14560038-14560115 asmbl_16646 scaffold_16 - retained_intron 14560038-14560115 asmbl_16647 // Retained and Spliced Intron # retained_intron 14575800-14575872 (orient:-) max_ev_support = 2 # spliced_intron 14575800-14575872 (orient:-) max_ev_support = 1 scaffold_16 - intron 14575800-14575872 asmbl_16653 scaffold_16 - retained_intron 14575800-14575872 asmbl_16652 // Retained and Spliced Intron # retained_intron 14662578-14662669 (orient:-) max_ev_support = 1 # spliced_intron 14662578-14662669 (orient:-) max_ev_support = 2 scaffold_16 - intron 14662578-14662669 asmbl_16674,asmbl_16676 scaffold_16 - retained_intron 14662578-14662669 asmbl_16675 // Retained and Spliced Intron # retained_intron 116383-116577 (orient:+) max_ev_support = 2 # spliced_intron 116383-116577 (orient:+) max_ev_support = 4 scaffold_16 + intron 116383-116577 asmbl_16783 scaffold_16 + retained_intron 116383-116577 asmbl_16784 // Exon Skipping and Retention # skipped_exon 125457-125887 (orient:+) max_ev_support = 2 # retained_exon 125551-125642 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 125551-125642 asmbl_16785 scaffold_16 + intron_skips_exon 125457-125887 asmbl_16788 // Retained and Spliced Intron # retained_intron 125053-125275 (orient:+) max_ev_support = 3 # spliced_intron 125053-125275 (orient:+) max_ev_support = 3 scaffold_16 + intron 125053-125275 asmbl_16785 scaffold_16 + retained_intron 125053-125275 asmbl_16786,asmbl_16787 // Retained and Spliced Intron # retained_intron 125457-125550 (orient:+) max_ev_support = 3 # spliced_intron 125457-125550 (orient:+) max_ev_support = 3 scaffold_16 + intron 125457-125550 asmbl_16785 scaffold_16 + retained_intron 125457-125550 asmbl_16786,asmbl_16787 // Retained and Spliced Intron # retained_intron 125457-125887 (orient:+) max_ev_support = 3 # spliced_intron 125457-125887 (orient:+) max_ev_support = 2 scaffold_16 + intron 125457-125887 asmbl_16788 scaffold_16 + retained_intron 125457-125887 asmbl_16786 // Retained and Spliced Intron # retained_intron 125643-125887 (orient:+) max_ev_support = 3 # spliced_intron 125643-125887 (orient:+) max_ev_support = 3 scaffold_16 + intron 125643-125887 asmbl_16785,asmbl_16787 scaffold_16 + retained_intron 125643-125887 asmbl_16786 // Retained and Spliced Intron # retained_intron 145688-145807 (orient:+) max_ev_support = 1 # spliced_intron 145688-145807 (orient:+) max_ev_support = 2 scaffold_16 + intron 145688-145807 asmbl_16789 scaffold_16 + retained_intron 145688-145807 asmbl_16790 // Retained and Spliced Intron # retained_intron 205536-205755 (orient:+) max_ev_support = 3 # spliced_intron 205536-205755 (orient:+) max_ev_support = 2 scaffold_16 + intron 205536-205755 asmbl_16792 scaffold_16 + retained_intron 205536-205755 asmbl_16791,asmbl_16793 // Exon Skipping and Retention # skipped_exon 206267-206971 (orient:+) max_ev_support = 3 # retained_exon 206369-206450 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 206369-206450 asmbl_16793 scaffold_16 + intron_skips_exon 206267-206971 asmbl_16791,asmbl_16792 // Retained and Spliced Intron # retained_intron 290653-291015 (orient:+) max_ev_support = 1 # spliced_intron 290653-291015 (orient:+) max_ev_support = 2 scaffold_16 + intron 290653-291015 asmbl_16802,asmbl_16804,asmbl_16805,asmbl_16806,asmbl_16807 scaffold_16 + retained_intron 290653-291015 asmbl_16809 // Exon Skipping and Retention # skipped_exon 318247-318842 (orient:+) max_ev_support = 3 # retained_exon 318495-318641 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 318495-318641 asmbl_16813 scaffold_16 + intron_skips_exon 318247-318842 asmbl_16812 // Retained and Spliced Intron # retained_intron 318642-318842 (orient:+) max_ev_support = 1 # spliced_intron 318642-318842 (orient:+) max_ev_support = 2 scaffold_16 + intron 318642-318842 asmbl_16813 scaffold_16 + retained_intron 318642-318842 asmbl_16814 // Retained and Spliced Intron # retained_intron 672773-672865 (orient:+) max_ev_support = 3 # spliced_intron 672773-672865 (orient:+) max_ev_support = 3 scaffold_16 + intron 672773-672865 asmbl_16820,asmbl_16821 scaffold_16 + retained_intron 672773-672865 asmbl_16819,asmbl_16822 // Retained and Spliced Intron # retained_intron 702407-702563 (orient:+) max_ev_support = 2 # spliced_intron 702407-702563 (orient:+) max_ev_support = 2 scaffold_16 + intron 702407-702563 asmbl_16828 scaffold_16 + retained_intron 702407-702563 asmbl_16831 // Retained and Spliced Intron # retained_intron 718051-718139 (orient:+) max_ev_support = 1 # spliced_intron 718051-718139 (orient:+) max_ev_support = 2 scaffold_16 + intron 718051-718139 asmbl_16832 scaffold_16 + retained_intron 718051-718139 asmbl_16833 // Retained and Spliced Intron # retained_intron 787406-787665 (orient:+) max_ev_support = 1 # spliced_intron 787406-787665 (orient:+) max_ev_support = 2 scaffold_16 + intron 787406-787665 asmbl_16835,asmbl_16836,asmbl_16837 scaffold_16 + retained_intron 787406-787665 asmbl_16838,asmbl_16839 // Retained and Spliced Intron # retained_intron 795167-795376 (orient:+) max_ev_support = 2 # spliced_intron 795167-795376 (orient:+) max_ev_support = 2 scaffold_16 + intron 795167-795376 asmbl_16842 scaffold_16 + retained_intron 795167-795376 asmbl_16841 // Retained and Spliced Intron # retained_intron 1510085-1511404 (orient:+) max_ev_support = 2 # spliced_intron 1510085-1511404 (orient:+) max_ev_support = 1 scaffold_16 + intron 1510085-1511404 asmbl_16871,asmbl_16873 scaffold_16 + retained_intron 1510085-1511404 asmbl_16870 // Retained and Spliced Intron # retained_intron 1510638-1511404 (orient:+) max_ev_support = 2 # spliced_intron 1510638-1511404 (orient:+) max_ev_support = 1 scaffold_16 + intron 1510638-1511404 asmbl_16872 scaffold_16 + retained_intron 1510638-1511404 asmbl_16870 // Exon Skipping and Retention # skipped_exon 1777457-1777810 (orient:+) max_ev_support = 3 # retained_exon 1777656-1777691 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 1777656-1777691 asmbl_16874,asmbl_16875,asmbl_16881 scaffold_16 + intron_skips_exon 1777457-1777810 asmbl_16876 // Exon Skipping and Retention # skipped_exon 1779104-1781016 (orient:+) max_ev_support = 2 # retained_exon 1779585-1779628 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 1779585-1779628 asmbl_16875,asmbl_16882 scaffold_16 + intron_skips_exon 1779104-1781016 asmbl_16876 // Exon Skipping and Retention # skipped_exon 1782813-1783654 (orient:+) max_ev_support = 1 # retained_exon 1783081-1783324 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 1783081-1783324 asmbl_16875,asmbl_16876,asmbl_16877 scaffold_16 + intron_skips_exon 1782813-1783654 asmbl_16882 // Retained and Spliced Intron # retained_intron 2172434-2173338 (orient:+) max_ev_support = 2 # spliced_intron 2172434-2173338 (orient:+) max_ev_support = 1 scaffold_16 + intron 2172434-2173338 asmbl_16901 scaffold_16 + retained_intron 2172434-2173338 asmbl_16899,asmbl_16903,asmbl_16905 // Retained and Spliced Intron # retained_intron 2172434-2173787 (orient:+) max_ev_support = 2 # spliced_intron 2172434-2173787 (orient:+) max_ev_support = 2 scaffold_16 + intron 2172434-2173787 asmbl_16900 scaffold_16 + retained_intron 2172434-2173787 asmbl_16899,asmbl_16903,asmbl_16905 // Retained and Spliced Intron # retained_intron 2215678-2215859 (orient:+) max_ev_support = 1 # spliced_intron 2215678-2215859 (orient:+) max_ev_support = 3 scaffold_16 + intron 2215678-2215859 asmbl_16912,asmbl_16914 scaffold_16 + retained_intron 2215678-2215859 asmbl_16913 // Retained and Spliced Intron # retained_intron 2571074-2571165 (orient:+) max_ev_support = 1 # spliced_intron 2571074-2571165 (orient:+) max_ev_support = 1 scaffold_16 + intron 2571074-2571165 asmbl_16919 scaffold_16 + retained_intron 2571074-2571165 asmbl_16920 // Exon Skipping and Retention # skipped_exon 3706316-3707156 (orient:+) max_ev_support = 1 # retained_exon 3706583-3707061 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 3706583-3706688,3706989-3707061 asmbl_16936,asmbl_16939 scaffold_16 + intron_skips_exon 3706316-3707156 asmbl_16937 // Retained and Spliced Intron # retained_intron 3706316-3706582 (orient:+) max_ev_support = 1 # spliced_intron 3706316-3706582 (orient:+) max_ev_support = 2 scaffold_16 + intron 3706316-3706582 asmbl_16936,asmbl_16939 scaffold_16 + retained_intron 3706316-3706582 asmbl_16938 // Retained and Spliced Intron # retained_intron 3707062-3707156 (orient:+) max_ev_support = 2 # spliced_intron 3707062-3707156 (orient:+) max_ev_support = 2 scaffold_16 + intron 3707062-3707156 asmbl_16936,asmbl_16939,asmbl_16940 scaffold_16 + retained_intron 3707062-3707156 asmbl_16938 // Retained and Spliced Intron # retained_intron 3706689-3706988 (orient:+) max_ev_support = 1 # spliced_intron 3706689-3706988 (orient:+) max_ev_support = 2 scaffold_16 + intron 3706689-3706988 asmbl_16936,asmbl_16938,asmbl_16939 scaffold_16 + retained_intron 3706689-3706988 asmbl_16940 // Retained and Spliced Intron # retained_intron 4095863-4096600 (orient:+) max_ev_support = 1 # spliced_intron 4095863-4096600 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095863-4096600 asmbl_16967 scaffold_16 + retained_intron 4095863-4096600 asmbl_16959,asmbl_16964,asmbl_16965,asmbl_16966,asmbl_16968 // Retained and Spliced Intron # retained_intron 4095144-4095461 (orient:+) max_ev_support = 1 # spliced_intron 4095144-4095461 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095144-4095461 asmbl_16959,asmbl_16964,asmbl_16966,asmbl_16967 scaffold_16 + retained_intron 4095144-4095461 asmbl_16965 // Retained and Spliced Intron # retained_intron 4095539-4095747 (orient:+) max_ev_support = 1 # spliced_intron 4095539-4095747 (orient:+) max_ev_support = 1 scaffold_16 + intron 4095539-4095747 asmbl_16959,asmbl_16964,asmbl_16965,asmbl_16966,asmbl_16967 scaffold_16 + retained_intron 4095539-4095747 asmbl_16968 // Retained and Spliced Intron # retained_intron 4161098-4161202 (orient:+) max_ev_support = 2 # spliced_intron 4161098-4161202 (orient:+) max_ev_support = 2 scaffold_16 + intron 4161098-4161202 asmbl_16974 scaffold_16 + retained_intron 4161098-4161202 asmbl_16975 // Retained and Spliced Intron # retained_intron 4655336-4655551 (orient:+) max_ev_support = 2 # spliced_intron 4655336-4655551 (orient:+) max_ev_support = 2 scaffold_16 + intron 4655336-4655551 asmbl_16986,asmbl_16987,asmbl_16991 scaffold_16 + retained_intron 4655336-4655551 asmbl_16988 // Retained and Spliced Intron # retained_intron 5393917-5394344 (orient:+) max_ev_support = 2 # spliced_intron 5393917-5394344 (orient:+) max_ev_support = 3 scaffold_16 + intron 5393917-5394344 asmbl_17004 scaffold_16 + retained_intron 5393917-5394344 asmbl_17005 // Retained and Spliced Intron # retained_intron 5395173-5395337 (orient:+) max_ev_support = 2 # spliced_intron 5395173-5395337 (orient:+) max_ev_support = 3 scaffold_16 + intron 5395173-5395337 asmbl_17004,asmbl_17005,asmbl_17007 scaffold_16 + retained_intron 5395173-5395337 asmbl_17006 // Retained and Spliced Intron # retained_intron 5394585-5394936 (orient:+) max_ev_support = 1 # spliced_intron 5394585-5394936 (orient:+) max_ev_support = 3 scaffold_16 + intron 5394585-5394936 asmbl_17004,asmbl_17005 scaffold_16 + retained_intron 5394585-5394936 asmbl_17007 // Retained and Spliced Intron # retained_intron 5395039-5395131 (orient:+) max_ev_support = 1 # spliced_intron 5395039-5395131 (orient:+) max_ev_support = 3 scaffold_16 + intron 5395039-5395131 asmbl_17004,asmbl_17005 scaffold_16 + retained_intron 5395039-5395131 asmbl_17007 // Retained and Spliced Intron # retained_intron 5754391-5755434 (orient:+) max_ev_support = 3 # spliced_intron 5754391-5755434 (orient:+) max_ev_support = 2 scaffold_16 + intron 5754391-5755434 asmbl_17015,asmbl_17017 scaffold_16 + retained_intron 5754391-5755434 asmbl_17014,asmbl_17016 // Exon Skipping and Retention # skipped_exon 5959143-5960591 (orient:+) max_ev_support = 1 # retained_exon 5960302-5960382 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 5960302-5960382 asmbl_17044 scaffold_16 + intron_skips_exon 5959143-5960591 asmbl_17040 // Exon Skipping and Retention # skipped_exon 5958928-5960591 (orient:+) max_ev_support = 1 # retained_exon 5960302-5960382 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 5960302-5960382 asmbl_17044 scaffold_16 + intron_skips_exon 5958928-5960591 asmbl_17041 // Retained and Spliced Intron # retained_intron 6135997-6136065 (orient:+) max_ev_support = 2 # spliced_intron 6135997-6136065 (orient:+) max_ev_support = 2 scaffold_16 + intron 6135997-6136065 asmbl_17067,asmbl_17068 scaffold_16 + retained_intron 6135997-6136065 asmbl_17066 // Retained and Spliced Intron # retained_intron 6135129-6135279 (orient:+) max_ev_support = 1 # spliced_intron 6135129-6135279 (orient:+) max_ev_support = 2 scaffold_16 + intron 6135129-6135279 asmbl_17066,asmbl_17067 scaffold_16 + retained_intron 6135129-6135279 asmbl_17068 // Exon Skipping and Retention # skipped_exon 6144352-6144917 (orient:+) max_ev_support = 2 # retained_exon 6144401-6144542 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 6144401-6144542 asmbl_17069,asmbl_17076,asmbl_17077 scaffold_16 + intron_skips_exon 6144352-6144917 asmbl_17070,asmbl_17072,asmbl_17073,asmbl_17074,asmbl_17075 // Exon Skipping and Retention # skipped_exon 6143876-6144400 (orient:+) max_ev_support = 1 # retained_exon 6144210-6144351 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 6144210-6144351 asmbl_17070,asmbl_17072,asmbl_17073,asmbl_17074,asmbl_17075 scaffold_16 + intron_skips_exon 6143876-6144400 asmbl_17069,asmbl_17076,asmbl_17077 // Retained and Spliced Intron # retained_intron 6149425-6149506 (orient:+) max_ev_support = 2 # spliced_intron 6149425-6149506 (orient:+) max_ev_support = 1 scaffold_16 + intron 6149425-6149506 asmbl_17069,asmbl_17075 scaffold_16 + retained_intron 6149425-6149506 asmbl_17071,asmbl_17072 // Retained and Spliced Intron # retained_intron 6193425-6193670 (orient:+) max_ev_support = 2 # spliced_intron 6193425-6193670 (orient:+) max_ev_support = 2 scaffold_16 + intron 6193425-6193670 asmbl_17084,asmbl_17090 scaffold_16 + retained_intron 6193425-6193670 asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17091 // Retained and Spliced Intron # retained_intron 6195012-6195163 (orient:+) max_ev_support = 2 # spliced_intron 6195012-6195163 (orient:+) max_ev_support = 2 scaffold_16 + intron 6195012-6195163 asmbl_17084,asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17091,asmbl_17092,asmbl_17093 scaffold_16 + retained_intron 6195012-6195163 asmbl_17086 // Retained and Spliced Intron # retained_intron 6195725-6195800 (orient:+) max_ev_support = 1 # spliced_intron 6195725-6195800 (orient:+) max_ev_support = 2 scaffold_16 + intron 6195725-6195800 asmbl_17084,asmbl_17085,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17091 scaffold_16 + retained_intron 6195725-6195800 asmbl_17087,asmbl_17092,asmbl_17093 // Retained and Spliced Intron # retained_intron 6195976-6196108 (orient:+) max_ev_support = 1 # spliced_intron 6195976-6196108 (orient:+) max_ev_support = 2 scaffold_16 + intron 6195976-6196108 asmbl_17084,asmbl_17085,asmbl_17089,asmbl_17090,asmbl_17091,asmbl_17093 scaffold_16 + retained_intron 6195976-6196108 asmbl_17087,asmbl_17088,asmbl_17092 // Retained and Spliced Intron # retained_intron 6196265-6196569 (orient:+) max_ev_support = 1 # spliced_intron 6196265-6196569 (orient:+) max_ev_support = 2 scaffold_16 + intron 6196265-6196569 asmbl_17084,asmbl_17085,asmbl_17091,asmbl_17093 scaffold_16 + retained_intron 6196265-6196569 asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090,asmbl_17092 // Retained and Spliced Intron # retained_intron 6194354-6194440 (orient:+) max_ev_support = 1 # spliced_intron 6194354-6194440 (orient:+) max_ev_support = 2 scaffold_16 + intron 6194354-6194440 asmbl_17084,asmbl_17085,asmbl_17087,asmbl_17088,asmbl_17089,asmbl_17090 scaffold_16 + retained_intron 6194354-6194440 asmbl_17091 // Retained and Spliced Intron # retained_intron 6198531-6198916 (orient:+) max_ev_support = 2 # spliced_intron 6198531-6198916 (orient:+) max_ev_support = 1 scaffold_16 + intron 6198531-6198916 asmbl_17096 scaffold_16 + retained_intron 6198531-6198916 asmbl_17094 // Retained and Spliced Intron # retained_intron 6199474-6199753 (orient:+) max_ev_support = 2 # spliced_intron 6199474-6199753 (orient:+) max_ev_support = 2 scaffold_16 + intron 6199474-6199753 asmbl_17094,asmbl_17096 scaffold_16 + retained_intron 6199474-6199753 asmbl_17095 // Retained and Spliced Intron # retained_intron 6534617-6536084 (orient:+) max_ev_support = 5 # spliced_intron 6534617-6536084 (orient:+) max_ev_support = 1 scaffold_16 + intron 6534617-6536084 asmbl_17108 scaffold_16 + retained_intron 6534617-6536084 asmbl_17105,asmbl_17106 // Exon Skipping and Retention # skipped_exon 7097030-7097963 (orient:+) max_ev_support = 2 # retained_exon 7097283-7097405 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 7097283-7097405 asmbl_17120 scaffold_16 + intron_skips_exon 7097030-7097963 asmbl_17121 // Exon Skipping and Retention # skipped_exon 7277120-7278374 (orient:+) max_ev_support = 1 # retained_exon 7277693-7278101 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 7277693-7277823,7277977-7278101 asmbl_17128 scaffold_16 + intron_skips_exon 7277120-7278374 asmbl_17129 // Retained and Spliced Intron # retained_intron 7520401-7520519 (orient:+) max_ev_support = 1 # spliced_intron 7520401-7520519 (orient:+) max_ev_support = 2 scaffold_16 + intron 7520401-7520519 asmbl_17139 scaffold_16 + retained_intron 7520401-7520519 asmbl_17140 // Retained and Spliced Intron # retained_intron 7910028-7910131 (orient:+) max_ev_support = 2 # spliced_intron 7910028-7910131 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910028-7910131 asmbl_17158 scaffold_16 + retained_intron 7910028-7910131 asmbl_17159,asmbl_17160 // Retained and Spliced Intron # retained_intron 7910151-7910238 (orient:+) max_ev_support = 2 # spliced_intron 7910151-7910238 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910151-7910238 asmbl_17158 scaffold_16 + retained_intron 7910151-7910238 asmbl_17159,asmbl_17160 // Retained and Spliced Intron # retained_intron 7910328-7910505 (orient:+) max_ev_support = 2 # spliced_intron 7910328-7910505 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910328-7910505 asmbl_17158,asmbl_17160 scaffold_16 + retained_intron 7910328-7910505 asmbl_17159 // Retained and Spliced Intron # retained_intron 7910628-7911984 (orient:+) max_ev_support = 1 # spliced_intron 7910628-7911984 (orient:+) max_ev_support = 3 scaffold_16 + intron 7910628-7911984 asmbl_17158 scaffold_16 + retained_intron 7910628-7911984 asmbl_17160 // Retained and Spliced Intron # retained_intron 8042887-8043037 (orient:+) max_ev_support = 3 # spliced_intron 8042887-8043037 (orient:+) max_ev_support = 2 scaffold_16 + intron 8042887-8043037 asmbl_17168,asmbl_17172 scaffold_16 + retained_intron 8042887-8043037 asmbl_17167,asmbl_17170,asmbl_17171 // Retained and Spliced Intron # retained_intron 8294415-8294498 (orient:+) max_ev_support = 2 # spliced_intron 8294415-8294498 (orient:+) max_ev_support = 2 scaffold_16 + intron 8294415-8294498 asmbl_17185 scaffold_16 + retained_intron 8294415-8294498 asmbl_17186 // Retained and Spliced Intron # retained_intron 8296144-8296212 (orient:+) max_ev_support = 1 # spliced_intron 8296144-8296212 (orient:+) max_ev_support = 1 scaffold_16 + intron 8296144-8296212 asmbl_17185 scaffold_16 + retained_intron 8296144-8296212 asmbl_17186 // Exon Skipping and Retention # skipped_exon 8463013-8463581 (orient:+) max_ev_support = 1 # retained_exon 8463269-8463373 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 8463269-8463373 asmbl_17190 scaffold_16 + intron_skips_exon 8463013-8463581 asmbl_17191 // Retained and Spliced Intron # retained_intron 8549399-8549668 (orient:+) max_ev_support = 2 # spliced_intron 8549399-8549668 (orient:+) max_ev_support = 2 scaffold_16 + intron 8549399-8549668 asmbl_17199 scaffold_16 + retained_intron 8549399-8549668 asmbl_17198 // Retained and Spliced Intron # retained_intron 8581350-8581577 (orient:+) max_ev_support = 1 # spliced_intron 8581350-8581577 (orient:+) max_ev_support = 2 scaffold_16 + intron 8581350-8581577 asmbl_17205,asmbl_17206 scaffold_16 + retained_intron 8581350-8581577 asmbl_17207 // Exon Skipping and Retention # skipped_exon 8584387-8585369 (orient:+) max_ev_support = 1 # retained_exon 8584929-8585014 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 8584929-8585014 asmbl_17208,asmbl_17209,asmbl_17210,asmbl_17212,asmbl_17216,asmbl_17218,asmbl_17219 scaffold_16 + intron_skips_exon 8584387-8585369 asmbl_17215,asmbl_17217,asmbl_17220,asmbl_17221 // Exon Skipping and Retention # skipped_exon 8644417-8645904 (orient:+) max_ev_support = 2 # retained_exon 8645174-8645323 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 8645174-8645323 asmbl_17226,asmbl_17228,asmbl_17232 scaffold_16 + intron_skips_exon 8644417-8645904 asmbl_17227 // Exon Skipping and Retention # skipped_exon 8639809-8640658 (orient:+) max_ev_support = 3 # retained_exon 8640050-8640106 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 8640050-8640106 asmbl_17227,asmbl_17228,asmbl_17231 scaffold_16 + intron_skips_exon 8639809-8640658 asmbl_17226 // Retained and Spliced Intron # retained_intron 8646214-8646704 (orient:+) max_ev_support = 2 # spliced_intron 8646214-8646704 (orient:+) max_ev_support = 2 scaffold_16 + intron 8646214-8646704 asmbl_17234,asmbl_17238,asmbl_17239 scaffold_16 + retained_intron 8646214-8646704 asmbl_17233,asmbl_17235 // Exon Skipping and Retention # skipped_exon 8892270-8894669 (orient:+) max_ev_support = 1 # retained_exon 8893071-8893116 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 8893071-8893116 asmbl_17246 scaffold_16 + intron_skips_exon 8892270-8894669 asmbl_17247 // Exon Skipping and Retention # skipped_exon 9032625-9033770 (orient:+) max_ev_support = 2 # retained_exon 9032991-9033040 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 9032991-9033040 asmbl_17252 scaffold_16 + intron_skips_exon 9032625-9033770 asmbl_17253,asmbl_17257 // Retained and Spliced Intron # retained_intron 9033041-9033770 (orient:+) max_ev_support = 2 # spliced_intron 9033041-9033770 (orient:+) max_ev_support = 2 scaffold_16 + intron 9033041-9033770 asmbl_17252 scaffold_16 + retained_intron 9033041-9033770 asmbl_17254,asmbl_17255,asmbl_17256 // Retained and Spliced Intron # retained_intron 9145668-9145955 (orient:+) max_ev_support = 1 # spliced_intron 9145668-9145955 (orient:+) max_ev_support = 1 scaffold_16 + intron 9145668-9145955 asmbl_17260 scaffold_16 + retained_intron 9145668-9145955 asmbl_17259,asmbl_17262 // Retained and Spliced Intron # retained_intron 9145719-9145955 (orient:+) max_ev_support = 1 # spliced_intron 9145719-9145955 (orient:+) max_ev_support = 2 scaffold_16 + intron 9145719-9145955 asmbl_17258,asmbl_17261,asmbl_17264 scaffold_16 + retained_intron 9145719-9145955 asmbl_17259,asmbl_17262 // Exon Skipping and Retention # skipped_exon 10105062-10105306 (orient:+) max_ev_support = 1 # retained_exon 10105152-10105224 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 10105152-10105224 asmbl_17318 scaffold_16 + intron_skips_exon 10105062-10105306 asmbl_17319,asmbl_17321 // Retained and Spliced Intron # retained_intron 10441689-10441843 (orient:+) max_ev_support = 2 # spliced_intron 10441689-10441843 (orient:+) max_ev_support = 4 scaffold_16 + intron 10441689-10441843 asmbl_17331 scaffold_16 + retained_intron 10441689-10441843 asmbl_17332 // Retained and Spliced Intron # retained_intron 10441689-10441848 (orient:+) max_ev_support = 2 # spliced_intron 10441689-10441848 (orient:+) max_ev_support = 1 scaffold_16 + intron 10441689-10441848 asmbl_17333 scaffold_16 + retained_intron 10441689-10441848 asmbl_17332 // Retained and Spliced Intron # retained_intron 10447527-10448352 (orient:+) max_ev_support = 3 # spliced_intron 10447527-10448352 (orient:+) max_ev_support = 1 scaffold_16 + intron 10447527-10448352 asmbl_17340 scaffold_16 + retained_intron 10447527-10448352 asmbl_17335,asmbl_17336 // Retained and Spliced Intron # retained_intron 10448144-10448354 (orient:+) max_ev_support = 3 # spliced_intron 10448144-10448354 (orient:+) max_ev_support = 1 scaffold_16 + intron 10448144-10448354 asmbl_17339 scaffold_16 + retained_intron 10448144-10448354 asmbl_17335,asmbl_17336 // Retained and Spliced Intron # retained_intron 10447527-10449544 (orient:+) max_ev_support = 4 # spliced_intron 10447527-10449544 (orient:+) max_ev_support = 1 scaffold_16 + intron 10447527-10449544 asmbl_17338 scaffold_16 + retained_intron 10447527-10449544 asmbl_17336 // Retained and Spliced Intron # retained_intron 10448430-10449544 (orient:+) max_ev_support = 4 # spliced_intron 10448430-10449544 (orient:+) max_ev_support = 1 scaffold_16 + intron 10448430-10449544 asmbl_17339,asmbl_17340 scaffold_16 + retained_intron 10448430-10449544 asmbl_17336 // Retained and Spliced Intron # retained_intron 10448911-10449544 (orient:+) max_ev_support = 2 # spliced_intron 10448911-10449544 (orient:+) max_ev_support = 3 scaffold_16 + intron 10448911-10449544 asmbl_17335,asmbl_17341 scaffold_16 + retained_intron 10448911-10449544 asmbl_17336,asmbl_17337 // Retained and Spliced Intron # retained_intron 10449577-10449822 (orient:+) max_ev_support = 2 # spliced_intron 10449577-10449822 (orient:+) max_ev_support = 3 scaffold_16 + intron 10449577-10449822 asmbl_17335,asmbl_17336,asmbl_17338,asmbl_17339,asmbl_17340 scaffold_16 + retained_intron 10449577-10449822 asmbl_17337,asmbl_17341 // Retained and Spliced Intron # retained_intron 10449967-10450337 (orient:+) max_ev_support = 2 # spliced_intron 10449967-10450337 (orient:+) max_ev_support = 3 scaffold_16 + intron 10449967-10450337 asmbl_17335,asmbl_17336,asmbl_17338,asmbl_17339,asmbl_17340,asmbl_17341 scaffold_16 + retained_intron 10449967-10450337 asmbl_17337 // Exon Skipping and Retention # skipped_exon 10447527-10449544 (orient:+) max_ev_support = 1 # retained_exon 10448355-10448429 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 10448355-10448429 asmbl_17339 scaffold_16 + intron_skips_exon 10447527-10449544 asmbl_17338 // Retained and Spliced Intron # retained_intron 10548755-10548950 (orient:+) max_ev_support = 2 # spliced_intron 10548755-10548950 (orient:+) max_ev_support = 1 scaffold_16 + intron 10548755-10548950 asmbl_17351 scaffold_16 + retained_intron 10548755-10548950 asmbl_17349 // Retained and Spliced Intron # retained_intron 10696898-10697449 (orient:+) max_ev_support = 4 # spliced_intron 10696898-10697449 (orient:+) max_ev_support = 3 scaffold_16 + intron 10696898-10697449 asmbl_17353 scaffold_16 + retained_intron 10696898-10697449 asmbl_17352 // Exon Skipping and Retention # skipped_exon 10835446-10836280 (orient:+) max_ev_support = 1 # retained_exon 10835886-10836029 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 10835886-10836029 asmbl_17361 scaffold_16 + intron_skips_exon 10835446-10836280 asmbl_17362 // Retained and Spliced Intron # retained_intron 11303194-11303588 (orient:+) max_ev_support = 4 # spliced_intron 11303194-11303588 (orient:+) max_ev_support = 3 scaffold_16 + intron 11303194-11303588 asmbl_17378 scaffold_16 + retained_intron 11303194-11303588 asmbl_17377 // Exon Skipping and Retention # skipped_exon 11335047-11337136 (orient:+) max_ev_support = 1 # retained_exon 11335261-11335310 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 11335261-11335310 asmbl_17382 scaffold_16 + intron_skips_exon 11335047-11337136 asmbl_17384 // Retained and Spliced Intron # retained_intron 11607412-11607538 (orient:+) max_ev_support = 2 # spliced_intron 11607412-11607538 (orient:+) max_ev_support = 1 scaffold_16 + intron 11607412-11607538 asmbl_17394 scaffold_16 + retained_intron 11607412-11607538 asmbl_17393 // Retained and Spliced Intron # retained_intron 11664164-11664277 (orient:+) max_ev_support = 1 # spliced_intron 11664164-11664277 (orient:+) max_ev_support = 2 scaffold_16 + intron 11664164-11664277 asmbl_17398,asmbl_17399 scaffold_16 + retained_intron 11664164-11664277 asmbl_17400 // Retained and Spliced Intron # retained_intron 12019045-12019148 (orient:+) max_ev_support = 2 # spliced_intron 12019045-12019148 (orient:+) max_ev_support = 2 scaffold_16 + intron 12019045-12019148 asmbl_17428,asmbl_17429,asmbl_17431 scaffold_16 + retained_intron 12019045-12019148 asmbl_17430 // Exon Skipping and Retention # skipped_exon 13216831-13218820 (orient:+) max_ev_support = 2 # retained_exon 13218005-13218082 (orient:+) max_ev_support = 3 scaffold_16 + retained_exons 13218005-13218082 asmbl_17454,asmbl_17460 scaffold_16 + intron_skips_exon 13216831-13218820 asmbl_17455,asmbl_17459 // Retained and Spliced Intron # retained_intron 13922163-13922274 (orient:+) max_ev_support = 2 # spliced_intron 13922163-13922274 (orient:+) max_ev_support = 2 scaffold_16 + intron 13922163-13922274 asmbl_17467 scaffold_16 + retained_intron 13922163-13922274 asmbl_17468 // Retained and Spliced Intron # retained_intron 14437676-14437729 (orient:+) max_ev_support = 3 # spliced_intron 14437676-14437729 (orient:+) max_ev_support = 1 scaffold_16 + intron 14437676-14437729 asmbl_17478 scaffold_16 + retained_intron 14437676-14437729 asmbl_17477 // Exon Skipping and Retention # skipped_exon 14485512-14487936 (orient:+) max_ev_support = 2 # retained_exon 14486585-14486677 (orient:+) max_ev_support = 1 scaffold_16 + retained_exons 14486585-14486677 asmbl_17484 scaffold_16 + intron_skips_exon 14485512-14487936 asmbl_17483,asmbl_17485 // Retained and Spliced Intron # retained_intron 14552847-14553116 (orient:+) max_ev_support = 2 # spliced_intron 14552847-14553116 (orient:+) max_ev_support = 3 scaffold_16 + intron 14552847-14553116 asmbl_17488,asmbl_17489,asmbl_17492 scaffold_16 + retained_intron 14552847-14553116 asmbl_17490,asmbl_17491 // Retained and Spliced Intron # retained_intron 14553177-14553355 (orient:+) max_ev_support = 2 # spliced_intron 14553177-14553355 (orient:+) max_ev_support = 3 scaffold_16 + intron 14553177-14553355 asmbl_17488,asmbl_17489,asmbl_17491 scaffold_16 + retained_intron 14553177-14553355 asmbl_17490,asmbl_17492 // Retained and Spliced Intron # retained_intron 14553404-14553521 (orient:+) max_ev_support = 2 # spliced_intron 14553404-14553521 (orient:+) max_ev_support = 3 scaffold_16 + intron 14553404-14553521 asmbl_17488,asmbl_17489,asmbl_17492 scaffold_16 + retained_intron 14553404-14553521 asmbl_17490 // Retained and Spliced Intron # retained_intron 14663726-14663814 (orient:+) max_ev_support = 3 # spliced_intron 14663726-14663814 (orient:+) max_ev_support = 3 scaffold_16 + intron 14663726-14663814 asmbl_17503 scaffold_16 + retained_intron 14663726-14663814 asmbl_17502 // Exon Skipping and Retention # skipped_exon 15218961-15220712 (orient:+) max_ev_support = 1 # retained_exon 15219675-15219803 (orient:+) max_ev_support = 2 scaffold_16 + retained_exons 15219675-15219803 asmbl_17522 scaffold_16 + intron_skips_exon 15218961-15220712 asmbl_17524 // Retained and Spliced Intron # retained_intron 15229002-15229042 (orient:+) max_ev_support = 1 # spliced_intron 15229002-15229042 (orient:+) max_ev_support = 1 scaffold_16 + intron 15229002-15229042 asmbl_17526 scaffold_16 + retained_intron 15229002-15229042 asmbl_17524,asmbl_17525 // Retained and Spliced Intron # retained_intron 1827-1982 (orient:+) max_ev_support = 2 # spliced_intron 1827-1982 (orient:+) max_ev_support = 1 scaffold_1611 + intron 1827-1982 asmbl_17636 scaffold_1611 + retained_intron 1827-1982 asmbl_17635 // Retained and Spliced Intron # retained_intron 4498-4819 (orient:+) max_ev_support = 3 # spliced_intron 4498-4819 (orient:+) max_ev_support = 1 scaffold_17 + intron 4498-4819 asmbl_17659 scaffold_17 + retained_intron 4498-4819 asmbl_17657,asmbl_17658 // Exon Skipping and Retention # skipped_exon 3607-4095 (orient:+) max_ev_support = 3 # retained_exon 3675-3812 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 3675-3812 asmbl_17658 scaffold_17 + intron_skips_exon 3607-4095 asmbl_17657,asmbl_17659 // Retained and Spliced Intron # retained_intron 538675-539181 (orient:+) max_ev_support = 2 # spliced_intron 538675-539181 (orient:+) max_ev_support = 2 scaffold_17 + intron 538675-539181 asmbl_17669,asmbl_17676 scaffold_17 + retained_intron 538675-539181 asmbl_17670,asmbl_17674 // Retained and Spliced Intron # retained_intron 538675-539184 (orient:+) max_ev_support = 2 # spliced_intron 538675-539184 (orient:+) max_ev_support = 1 scaffold_17 + intron 538675-539184 asmbl_17671,asmbl_17672 scaffold_17 + retained_intron 538675-539184 asmbl_17670,asmbl_17674 // Exon Skipping and Retention # skipped_exon 543556-545026 (orient:+) max_ev_support = 1 # retained_exon 544862-544946 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 544862-544946 asmbl_17678 scaffold_17 + intron_skips_exon 543556-545026 asmbl_17679 // Retained and Spliced Intron # retained_intron 651449-651532 (orient:+) max_ev_support = 3 # spliced_intron 651449-651532 (orient:+) max_ev_support = 3 scaffold_17 + intron 651449-651532 asmbl_17682 scaffold_17 + retained_intron 651449-651532 asmbl_17683 // Retained and Spliced Intron # retained_intron 793736-793904 (orient:+) max_ev_support = 2 # spliced_intron 793736-793904 (orient:+) max_ev_support = 1 scaffold_17 + intron 793736-793904 asmbl_17704,asmbl_17705 scaffold_17 + retained_intron 793736-793904 asmbl_17703 // Retained and Spliced Intron # retained_intron 793926-794149 (orient:+) max_ev_support = 2 # spliced_intron 793926-794149 (orient:+) max_ev_support = 1 scaffold_17 + intron 793926-794149 asmbl_17704,asmbl_17705 scaffold_17 + retained_intron 793926-794149 asmbl_17703 // Exon Skipping and Retention # skipped_exon 791549-793111 (orient:+) max_ev_support = 1 # retained_exon 791861-791911 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 791861-791911 asmbl_17704,asmbl_17705 scaffold_17 + intron_skips_exon 791549-793111 asmbl_17703 // Retained and Spliced Intron # retained_intron 1128141-1128819 (orient:+) max_ev_support = 3 # spliced_intron 1128141-1128819 (orient:+) max_ev_support = 1 scaffold_17 + intron 1128141-1128819 asmbl_17721,asmbl_17722 scaffold_17 + retained_intron 1128141-1128819 asmbl_17718 // Retained and Spliced Intron # retained_intron 1353517-1353628 (orient:+) max_ev_support = 3 # spliced_intron 1353517-1353628 (orient:+) max_ev_support = 2 scaffold_17 + intron 1353517-1353628 asmbl_17732 scaffold_17 + retained_intron 1353517-1353628 asmbl_17731 // Retained and Spliced Intron # retained_intron 1523950-1524129 (orient:+) max_ev_support = 2 # spliced_intron 1523950-1524129 (orient:+) max_ev_support = 1 scaffold_17 + intron 1523950-1524129 asmbl_17742 scaffold_17 + retained_intron 1523950-1524129 asmbl_17741 // Retained and Spliced Intron # retained_intron 1592933-1593714 (orient:+) max_ev_support = 3 # spliced_intron 1592933-1593714 (orient:+) max_ev_support = 2 scaffold_17 + intron 1592933-1593714 asmbl_17744 scaffold_17 + retained_intron 1592933-1593714 asmbl_17743 // Retained and Spliced Intron # retained_intron 1602805-1602948 (orient:+) max_ev_support = 1 # spliced_intron 1602805-1602948 (orient:+) max_ev_support = 2 scaffold_17 + intron 1602805-1602948 asmbl_17746 scaffold_17 + retained_intron 1602805-1602948 asmbl_17747 // Exon Skipping and Retention # skipped_exon 1665159-1667659 (orient:+) max_ev_support = 2 # retained_exon 1665736-1665886 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 1665736-1665886 asmbl_17749,asmbl_17751 scaffold_17 + intron_skips_exon 1665159-1667659 asmbl_17750 // Retained and Spliced Intron # retained_intron 1729059-1729151 (orient:+) max_ev_support = 1 # spliced_intron 1729059-1729151 (orient:+) max_ev_support = 2 scaffold_17 + intron 1729059-1729151 asmbl_17753,asmbl_17755 scaffold_17 + retained_intron 1729059-1729151 asmbl_17756 // Exon Skipping and Retention # skipped_exon 2354078-2358162 (orient:+) max_ev_support = 1 # retained_exon 2354832-2357750 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463,2357645-2357750 asmbl_17765 scaffold_17 + retained_exons 2354832-2355038,2357645-2357750 asmbl_17771 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_17768 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_17768 // Exon Skipping and Retention # skipped_exon 2354078-2358464 (orient:+) max_ev_support = 1 # retained_exon 2354832-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463,2357645-2357750,2358163-2358219 asmbl_17765 scaffold_17 + retained_exons 2354832-2355038,2357645-2357750,2358163-2358219 asmbl_17771 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_17770 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_17770 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355383-2355463 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463 asmbl_17766,asmbl_17769,asmbl_17765 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_17771 // Exon Skipping and Retention # skipped_exon 2355039-2358464 (orient:+) max_ev_support = 1 # retained_exon 2355383-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463,2357645-2357750,2358163-2358219 asmbl_17765 scaffold_17 + intron_skips_exon 2355039-2355866 asmbl_17767 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_17767 // Exon Skipping and Retention # skipped_exon 2355973-2358162 (orient:+) max_ev_support = 1 # retained_exon 2357645-2357750 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2357645-2357750 asmbl_17765,asmbl_17771 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_17769,asmbl_17768 // Exon Skipping and Retention # skipped_exon 2356401-2358464 (orient:+) max_ev_support = 1 # retained_exon 2357645-2358219 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2357645-2357750,2358163-2358219 asmbl_17765,asmbl_17771 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_17766,asmbl_17767,asmbl_17770 // Exon Skipping and Retention # skipped_exon 2354078-2355866 (orient:+) max_ev_support = 1 # retained_exon 2354832-2355463 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2354832-2355038,2355383-2355463 asmbl_17766,asmbl_17769 scaffold_17 + intron_skips_exon 2354078-2355866 asmbl_17768,asmbl_17770 // Exon Skipping and Retention # skipped_exon 2355039-2355866 (orient:+) max_ev_support = 1 # retained_exon 2355383-2355463 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2355383-2355463 asmbl_17766,asmbl_17769,asmbl_17765 scaffold_17 + intron_skips_exon 2355039-2355866 asmbl_17767 // Exon Skipping and Retention # skipped_exon 2355464-2357644 (orient:+) max_ev_support = 2 # retained_exon 2355867-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972,2356344-2356400 asmbl_17766,asmbl_17767,asmbl_17770 scaffold_17 + intron_skips_exon 2355464-2357644 asmbl_17765 // Exon Skipping and Retention # skipped_exon 2355973-2358162 (orient:+) max_ev_support = 1 # retained_exon 2356344-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2356344-2356400 asmbl_17766,asmbl_17767,asmbl_17770 scaffold_17 + intron_skips_exon 2355973-2358162 asmbl_17769,asmbl_17768 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355867-2356400 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972,2356344-2356400 asmbl_17766,asmbl_17767,asmbl_17770 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_17771 // Exon Skipping and Retention # skipped_exon 2355039-2357644 (orient:+) max_ev_support = 1 # retained_exon 2355867-2355972 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2355867-2355972 asmbl_17768,asmbl_17769 scaffold_17 + intron_skips_exon 2355039-2357644 asmbl_17771 // Exon Skipping and Retention # skipped_exon 2356401-2358464 (orient:+) max_ev_support = 1 # retained_exon 2358163-2358219 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 2358163-2358219 asmbl_17768,asmbl_17769 scaffold_17 + intron_skips_exon 2356401-2358464 asmbl_17766,asmbl_17767,asmbl_17770 // Retained and Spliced Intron # retained_intron 2566428-2566630 (orient:+) max_ev_support = 2 # spliced_intron 2566428-2566630 (orient:+) max_ev_support = 1 scaffold_17 + intron 2566428-2566630 asmbl_17796 scaffold_17 + retained_intron 2566428-2566630 asmbl_17793 // Retained and Spliced Intron # retained_intron 2566428-2566633 (orient:+) max_ev_support = 2 # spliced_intron 2566428-2566633 (orient:+) max_ev_support = 2 scaffold_17 + intron 2566428-2566633 asmbl_17792,asmbl_17795 scaffold_17 + retained_intron 2566428-2566633 asmbl_17793 // Exon Skipping and Retention # skipped_exon 2634157-2636152 (orient:+) max_ev_support = 2 # retained_exon 2634874-2635014 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2634874-2635014 asmbl_17800 scaffold_17 + intron_skips_exon 2634157-2636152 asmbl_17801,asmbl_17806 // Exon Skipping and Retention # skipped_exon 2681607-2682291 (orient:+) max_ev_support = 2 # retained_exon 2681893-2682008 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 2681893-2682008 asmbl_17810,asmbl_17812 scaffold_17 + intron_skips_exon 2681607-2682291 asmbl_17809 // Retained and Spliced Intron # retained_intron 2685101-2685190 (orient:+) max_ev_support = 2 # spliced_intron 2685101-2685190 (orient:+) max_ev_support = 2 scaffold_17 + intron 2685101-2685190 asmbl_17809,asmbl_17810,asmbl_17812,asmbl_17813 scaffold_17 + retained_intron 2685101-2685190 asmbl_17811 // Retained and Spliced Intron # retained_intron 2684608-2684736 (orient:+) max_ev_support = 1 # spliced_intron 2684608-2684736 (orient:+) max_ev_support = 2 scaffold_17 + intron 2684608-2684736 asmbl_17809,asmbl_17810,asmbl_17812 scaffold_17 + retained_intron 2684608-2684736 asmbl_17813 // Retained and Spliced Intron # retained_intron 2719992-2720105 (orient:+) max_ev_support = 3 # spliced_intron 2719992-2720105 (orient:+) max_ev_support = 1 scaffold_17 + intron 2719992-2720105 asmbl_17823 scaffold_17 + retained_intron 2719992-2720105 asmbl_17821 // Retained and Spliced Intron # retained_intron 2720917-2721238 (orient:+) max_ev_support = 2 # spliced_intron 2720917-2721238 (orient:+) max_ev_support = 3 scaffold_17 + intron 2720917-2721238 asmbl_17821,asmbl_17823 scaffold_17 + retained_intron 2720917-2721238 asmbl_17822 // Retained and Spliced Intron # retained_intron 2721370-2721870 (orient:+) max_ev_support = 2 # spliced_intron 2721370-2721870 (orient:+) max_ev_support = 3 scaffold_17 + intron 2721370-2721870 asmbl_17821,asmbl_17823 scaffold_17 + retained_intron 2721370-2721870 asmbl_17822 // Retained and Spliced Intron # retained_intron 3795219-3795317 (orient:+) max_ev_support = 1 # spliced_intron 3795219-3795317 (orient:+) max_ev_support = 2 scaffold_17 + intron 3795219-3795317 asmbl_17864 scaffold_17 + retained_intron 3795219-3795317 asmbl_17865 // Retained and Spliced Intron # retained_intron 3839188-3839302 (orient:+) max_ev_support = 1 # spliced_intron 3839188-3839302 (orient:+) max_ev_support = 2 scaffold_17 + intron 3839188-3839302 asmbl_17868,asmbl_17870 scaffold_17 + retained_intron 3839188-3839302 asmbl_17871 // Retained and Spliced Intron # retained_intron 3998088-3998274 (orient:+) max_ev_support = 2 # spliced_intron 3998088-3998274 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998088-3998274 asmbl_17882,asmbl_17885 scaffold_17 + retained_intron 3998088-3998274 asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17884,asmbl_17886,asmbl_17887 // Retained and Spliced Intron # retained_intron 3998584-3998705 (orient:+) max_ev_support = 2 # spliced_intron 3998584-3998705 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998584-3998705 asmbl_17882,asmbl_17887 scaffold_17 + retained_intron 3998584-3998705 asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17885,asmbl_17886 // Retained and Spliced Intron # retained_intron 3998584-3998790 (orient:+) max_ev_support = 2 # spliced_intron 3998584-3998790 (orient:+) max_ev_support = 1 scaffold_17 + intron 3998584-3998790 asmbl_17884 scaffold_17 + retained_intron 3998584-3998790 asmbl_17880,asmbl_17881,asmbl_17883,asmbl_17885,asmbl_17886 // Retained and Spliced Intron # retained_intron 3998821-3998969 (orient:+) max_ev_support = 1 # spliced_intron 3998821-3998969 (orient:+) max_ev_support = 2 scaffold_17 + intron 3998821-3998969 asmbl_17880,asmbl_17882,asmbl_17884,asmbl_17886,asmbl_17887 scaffold_17 + retained_intron 3998821-3998969 asmbl_17881,asmbl_17883,asmbl_17885 // Retained and Spliced Intron # retained_intron 4005466-4005564 (orient:+) max_ev_support = 1 # spliced_intron 4005466-4005564 (orient:+) max_ev_support = 2 scaffold_17 + intron 4005466-4005564 asmbl_17888 scaffold_17 + retained_intron 4005466-4005564 asmbl_17890 // Retained and Spliced Intron # retained_intron 4267792-4267908 (orient:+) max_ev_support = 2 # spliced_intron 4267792-4267908 (orient:+) max_ev_support = 2 scaffold_17 + intron 4267792-4267908 asmbl_17904 scaffold_17 + retained_intron 4267792-4267908 asmbl_17907 // Retained and Spliced Intron # retained_intron 4267993-4268192 (orient:+) max_ev_support = 2 # spliced_intron 4267993-4268192 (orient:+) max_ev_support = 2 scaffold_17 + intron 4267993-4268192 asmbl_17904 scaffold_17 + retained_intron 4267993-4268192 asmbl_17907 // Exon Skipping and Retention # skipped_exon 5071670-5072556 (orient:+) max_ev_support = 3 # retained_exon 5072141-5072246 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 5072141-5072246 asmbl_17931,asmbl_17933,asmbl_17934,asmbl_17936 scaffold_17 + intron_skips_exon 5071670-5072556 asmbl_17930,asmbl_17932,asmbl_17935 // Retained and Spliced Intron # retained_intron 5074760-5074970 (orient:+) max_ev_support = 2 # spliced_intron 5074760-5074970 (orient:+) max_ev_support = 2 scaffold_17 + intron 5074760-5074970 asmbl_17938 scaffold_17 + retained_intron 5074760-5074970 asmbl_17937 // Exon Skipping and Retention # skipped_exon 5096466-5097292 (orient:+) max_ev_support = 1 # retained_exon 5097033-5097177 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 5097033-5097177 asmbl_17939 scaffold_17 + intron_skips_exon 5096466-5097292 asmbl_17940 // Exon Skipping and Retention # skipped_exon 5095847-5097032 (orient:+) max_ev_support = 2 # retained_exon 5096321-5096465 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 5096321-5096465 asmbl_17940 scaffold_17 + intron_skips_exon 5095847-5097032 asmbl_17939 // Exon Skipping and Retention # skipped_exon 5323173-5324241 (orient:+) max_ev_support = 2 # retained_exon 5323681-5323701 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 5323681-5323701 asmbl_17945 scaffold_17 + intron_skips_exon 5323173-5324241 asmbl_17944 // Retained and Spliced Intron # retained_intron 5341453-5341640 (orient:+) max_ev_support = 3 # spliced_intron 5341453-5341640 (orient:+) max_ev_support = 1 scaffold_17 + intron 5341453-5341640 asmbl_17948 scaffold_17 + retained_intron 5341453-5341640 asmbl_17947 // Exon Skipping and Retention # skipped_exon 5998506-6000825 (orient:+) max_ev_support = 1 # retained_exon 5998745-5999074 (orient:+) max_ev_support = 4 scaffold_17 + retained_exons 5998745-5999074 asmbl_17963 scaffold_17 + intron_skips_exon 5998506-6000825 asmbl_17965,asmbl_17966 // Exon Skipping and Retention # skipped_exon 6370660-6373383 (orient:+) max_ev_support = 1 # retained_exon 6370848-6371633 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 6370848-6370964,6371101-6371145,6371246-6371308,6371595-6371633 asmbl_17977 scaffold_17 + intron_skips_exon 6370660-6373383 asmbl_17978 // Retained and Spliced Intron # retained_intron 6390344-6390421 (orient:+) max_ev_support = 2 # spliced_intron 6390344-6390421 (orient:+) max_ev_support = 1 scaffold_17 + intron 6390344-6390421 asmbl_17980 scaffold_17 + retained_intron 6390344-6390421 asmbl_17979 // Retained and Spliced Intron # retained_intron 6684218-6684381 (orient:+) max_ev_support = 2 # spliced_intron 6684218-6684381 (orient:+) max_ev_support = 2 scaffold_17 + intron 6684218-6684381 asmbl_17994 scaffold_17 + retained_intron 6684218-6684381 asmbl_17993 // Retained and Spliced Intron # retained_intron 6684218-6684386 (orient:+) max_ev_support = 2 # spliced_intron 6684218-6684386 (orient:+) max_ev_support = 2 scaffold_17 + intron 6684218-6684386 asmbl_17995 scaffold_17 + retained_intron 6684218-6684386 asmbl_17993 // Retained and Spliced Intron # retained_intron 6808283-6808729 (orient:+) max_ev_support = 3 # spliced_intron 6808283-6808729 (orient:+) max_ev_support = 3 scaffold_17 + intron 6808283-6808729 asmbl_18006 scaffold_17 + retained_intron 6808283-6808729 asmbl_18007 // Exon Skipping and Retention # skipped_exon 7022213-7023454 (orient:+) max_ev_support = 1 # retained_exon 7022834-7023105 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 7022834-7023105 asmbl_18014 scaffold_17 + intron_skips_exon 7022213-7023454 asmbl_18015 // Retained and Spliced Intron # retained_intron 7023727-7024347 (orient:+) max_ev_support = 1 # spliced_intron 7023727-7024347 (orient:+) max_ev_support = 1 scaffold_17 + intron 7023727-7024347 asmbl_18016 scaffold_17 + retained_intron 7023727-7024347 asmbl_18015 // Exon Skipping and Retention # skipped_exon 7046365-7049246 (orient:+) max_ev_support = 2 # retained_exon 7047020-7047118 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 7047020-7047118 asmbl_18018 scaffold_17 + intron_skips_exon 7046365-7049246 asmbl_18019 // Retained and Spliced Intron # retained_intron 7046365-7047019 (orient:+) max_ev_support = 1 # spliced_intron 7046365-7047019 (orient:+) max_ev_support = 1 scaffold_17 + intron 7046365-7047019 asmbl_18018 scaffold_17 + retained_intron 7046365-7047019 asmbl_18021 // Retained and Spliced Intron # retained_intron 7047119-7047494 (orient:+) max_ev_support = 1 # spliced_intron 7047119-7047494 (orient:+) max_ev_support = 1 scaffold_17 + intron 7047119-7047494 asmbl_18018 scaffold_17 + retained_intron 7047119-7047494 asmbl_18021 // Retained and Spliced Intron # retained_intron 7049932-7050209 (orient:+) max_ev_support = 1 # spliced_intron 7049932-7050209 (orient:+) max_ev_support = 2 scaffold_17 + intron 7049932-7050209 asmbl_18019 scaffold_17 + retained_intron 7049932-7050209 asmbl_18022 // Exon Skipping and Retention # skipped_exon 7101219-7102087 (orient:+) max_ev_support = 2 # retained_exon 7101487-7101709 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 7101487-7101709 asmbl_18025 scaffold_17 + intron_skips_exon 7101219-7102087 asmbl_18026 // Retained and Spliced Intron # retained_intron 7671529-7672234 (orient:+) max_ev_support = 2 # spliced_intron 7671529-7672234 (orient:+) max_ev_support = 2 scaffold_17 + intron 7671529-7672234 asmbl_18047 scaffold_17 + retained_intron 7671529-7672234 asmbl_18048 // Exon Skipping and Retention # skipped_exon 7849232-7849831 (orient:+) max_ev_support = 1 # retained_exon 7849410-7849473 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 7849410-7849473 asmbl_18052,asmbl_18054 scaffold_17 + intron_skips_exon 7849232-7849831 asmbl_18055 // Exon Skipping and Retention # skipped_exon 7849474-7850188 (orient:+) max_ev_support = 1 # retained_exon 7849832-7849895 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 7849832-7849895 asmbl_18052,asmbl_18054 scaffold_17 + intron_skips_exon 7849474-7850188 asmbl_18056 // Retained and Spliced Intron # retained_intron 7850236-7850403 (orient:+) max_ev_support = 2 # spliced_intron 7850236-7850403 (orient:+) max_ev_support = 1 scaffold_17 + intron 7850236-7850403 asmbl_18054,asmbl_18055,asmbl_18056 scaffold_17 + retained_intron 7850236-7850403 asmbl_18052,asmbl_18053 // Retained and Spliced Intron # retained_intron 8158916-8159004 (orient:+) max_ev_support = 1 # spliced_intron 8158916-8159004 (orient:+) max_ev_support = 2 scaffold_17 + intron 8158916-8159004 asmbl_18067,asmbl_18070 scaffold_17 + retained_intron 8158916-8159004 asmbl_18069 // Retained and Spliced Intron # retained_intron 8221394-8221539 (orient:+) max_ev_support = 1 # spliced_intron 8221394-8221539 (orient:+) max_ev_support = 1 scaffold_17 + intron 8221394-8221539 asmbl_18084,asmbl_18085,asmbl_18087 scaffold_17 + retained_intron 8221394-8221539 asmbl_18083 // Exon Skipping and Retention # skipped_exon 8220293-8221539 (orient:+) max_ev_support = 2 # retained_exon 8221255-8221393 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 8221255-8221393 asmbl_18085,asmbl_18087 scaffold_17 + intron_skips_exon 8220293-8221539 asmbl_18077,asmbl_18078,asmbl_18082,asmbl_18086 // Retained and Spliced Intron # retained_intron 8317665-8317806 (orient:+) max_ev_support = 1 # spliced_intron 8317665-8317806 (orient:+) max_ev_support = 1 scaffold_17 + intron 8317665-8317806 asmbl_18099 scaffold_17 + retained_intron 8317665-8317806 asmbl_18093,asmbl_18100 // Retained and Spliced Intron # retained_intron 8317665-8317809 (orient:+) max_ev_support = 1 # spliced_intron 8317665-8317809 (orient:+) max_ev_support = 1 scaffold_17 + intron 8317665-8317809 asmbl_18094,asmbl_18095,asmbl_18098 scaffold_17 + retained_intron 8317665-8317809 asmbl_18093,asmbl_18100 // Retained and Spliced Intron # retained_intron 8316944-8317189 (orient:+) max_ev_support = 1 # spliced_intron 8316944-8317189 (orient:+) max_ev_support = 1 scaffold_17 + intron 8316944-8317189 asmbl_18093,asmbl_18094,asmbl_18098,asmbl_18099,asmbl_18100 scaffold_17 + retained_intron 8316944-8317189 asmbl_18095 // Retained and Spliced Intron # retained_intron 8319306-8319398 (orient:+) max_ev_support = 2 # spliced_intron 8319306-8319398 (orient:+) max_ev_support = 2 scaffold_17 + intron 8319306-8319398 asmbl_18093,asmbl_18094,asmbl_18095,asmbl_18096,asmbl_18098,asmbl_18099,asmbl_18100,asmbl_18101 scaffold_17 + retained_intron 8319306-8319398 asmbl_18097 // Retained and Spliced Intron # retained_intron 8318266-8318617 (orient:+) max_ev_support = 1 # spliced_intron 8318266-8318617 (orient:+) max_ev_support = 2 scaffold_17 + intron 8318266-8318617 asmbl_18093,asmbl_18095,asmbl_18096 scaffold_17 + retained_intron 8318266-8318617 asmbl_18101 // Retained and Spliced Intron # retained_intron 8318341-8318617 (orient:+) max_ev_support = 1 # spliced_intron 8318341-8318617 (orient:+) max_ev_support = 1 scaffold_17 + intron 8318341-8318617 asmbl_18098,asmbl_18099,asmbl_18100 scaffold_17 + retained_intron 8318341-8318617 asmbl_18101 // Retained and Spliced Intron # retained_intron 8318412-8318617 (orient:+) max_ev_support = 1 # spliced_intron 8318412-8318617 (orient:+) max_ev_support = 1 scaffold_17 + intron 8318412-8318617 asmbl_18094 scaffold_17 + retained_intron 8318412-8318617 asmbl_18101 // Retained and Spliced Intron # retained_intron 8318778-8318915 (orient:+) max_ev_support = 1 # spliced_intron 8318778-8318915 (orient:+) max_ev_support = 2 scaffold_17 + intron 8318778-8318915 asmbl_18093,asmbl_18094,asmbl_18095,asmbl_18096,asmbl_18098,asmbl_18099,asmbl_18100 scaffold_17 + retained_intron 8318778-8318915 asmbl_18101 // Retained and Spliced Intron # retained_intron 8321556-8321624 (orient:+) max_ev_support = 2 # spliced_intron 8321556-8321624 (orient:+) max_ev_support = 3 scaffold_17 + intron 8321556-8321624 asmbl_18102 scaffold_17 + retained_intron 8321556-8321624 asmbl_18103 // Retained and Spliced Intron # retained_intron 8355294-8355515 (orient:+) max_ev_support = 3 # spliced_intron 8355294-8355515 (orient:+) max_ev_support = 2 scaffold_17 + intron 8355294-8355515 asmbl_18116 scaffold_17 + retained_intron 8355294-8355515 asmbl_18115 // Exon Skipping and Retention # skipped_exon 8355060-8355515 (orient:+) max_ev_support = 3 # retained_exon 8355208-8355293 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 8355208-8355293 asmbl_18116 scaffold_17 + intron_skips_exon 8355060-8355515 asmbl_18114 // Retained and Spliced Intron # retained_intron 8540373-8540456 (orient:+) max_ev_support = 2 # spliced_intron 8540373-8540456 (orient:+) max_ev_support = 1 scaffold_17 + intron 8540373-8540456 asmbl_18122 scaffold_17 + retained_intron 8540373-8540456 asmbl_18120,asmbl_18121 // Exon Skipping and Retention # skipped_exon 8541916-8543124 (orient:+) max_ev_support = 2 # retained_exon 8542325-8542348 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 8542325-8542348 asmbl_18120,asmbl_18122 scaffold_17 + intron_skips_exon 8541916-8543124 asmbl_18121 // Retained and Spliced Intron # retained_intron 8543163-8543246 (orient:+) max_ev_support = 1 # spliced_intron 8543163-8543246 (orient:+) max_ev_support = 2 scaffold_17 + intron 8543163-8543246 asmbl_18120,asmbl_18121,asmbl_18122 scaffold_17 + retained_intron 8543163-8543246 asmbl_18124 // Exon Skipping and Retention # skipped_exon 8611499-8614310 (orient:+) max_ev_support = 1 # retained_exon 8613560-8613604 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 8613560-8613604 asmbl_18131,asmbl_18132,asmbl_18133 scaffold_17 + intron_skips_exon 8611499-8614310 asmbl_18134,asmbl_18135 // Retained and Spliced Intron # retained_intron 8626666-8626834 (orient:+) max_ev_support = 2 # spliced_intron 8626666-8626834 (orient:+) max_ev_support = 3 scaffold_17 + intron 8626666-8626834 asmbl_18137 scaffold_17 + retained_intron 8626666-8626834 asmbl_18138 // Retained and Spliced Intron # retained_intron 8626956-8627047 (orient:+) max_ev_support = 2 # spliced_intron 8626956-8627047 (orient:+) max_ev_support = 3 scaffold_17 + intron 8626956-8627047 asmbl_18137 scaffold_17 + retained_intron 8626956-8627047 asmbl_18138 // Retained and Spliced Intron # retained_intron 8731691-8732397 (orient:+) max_ev_support = 3 # spliced_intron 8731691-8732397 (orient:+) max_ev_support = 2 scaffold_17 + intron 8731691-8732397 asmbl_18148 scaffold_17 + retained_intron 8731691-8732397 asmbl_18147 // Retained and Spliced Intron # retained_intron 8845886-8846064 (orient:+) max_ev_support = 2 # spliced_intron 8845886-8846064 (orient:+) max_ev_support = 2 scaffold_17 + intron 8845886-8846064 asmbl_18150 scaffold_17 + retained_intron 8845886-8846064 asmbl_18151,asmbl_18153,asmbl_18154 // Retained and Spliced Intron # retained_intron 8846095-8846264 (orient:+) max_ev_support = 2 # spliced_intron 8846095-8846264 (orient:+) max_ev_support = 2 scaffold_17 + intron 8846095-8846264 asmbl_18150,asmbl_18153 scaffold_17 + retained_intron 8846095-8846264 asmbl_18151,asmbl_18154 // Retained and Spliced Intron # retained_intron 8848586-8849302 (orient:+) max_ev_support = 2 # spliced_intron 8848586-8849302 (orient:+) max_ev_support = 1 scaffold_17 + intron 8848586-8849302 asmbl_18156 scaffold_17 + retained_intron 8848586-8849302 asmbl_18155 // Retained and Spliced Intron # retained_intron 8875826-8875983 (orient:+) max_ev_support = 2 # spliced_intron 8875826-8875983 (orient:+) max_ev_support = 2 scaffold_17 + intron 8875826-8875983 asmbl_18164 scaffold_17 + retained_intron 8875826-8875983 asmbl_18163 // Retained and Spliced Intron # retained_intron 8880820-8880901 (orient:+) max_ev_support = 1 # spliced_intron 8880820-8880901 (orient:+) max_ev_support = 2 scaffold_17 + intron 8880820-8880901 asmbl_18166 scaffold_17 + retained_intron 8880820-8880901 asmbl_18168 // Retained and Spliced Intron # retained_intron 8951018-8951264 (orient:+) max_ev_support = 2 # spliced_intron 8951018-8951264 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951018-8951264 asmbl_18175 scaffold_17 + retained_intron 8951018-8951264 asmbl_18174 // Retained and Spliced Intron # retained_intron 8951374-8951464 (orient:+) max_ev_support = 2 # spliced_intron 8951374-8951464 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951374-8951464 asmbl_18175 scaffold_17 + retained_intron 8951374-8951464 asmbl_18174 // Retained and Spliced Intron # retained_intron 8951543-8951643 (orient:+) max_ev_support = 2 # spliced_intron 8951543-8951643 (orient:+) max_ev_support = 2 scaffold_17 + intron 8951543-8951643 asmbl_18175 scaffold_17 + retained_intron 8951543-8951643 asmbl_18174 // Retained and Spliced Intron # retained_intron 9004119-9004561 (orient:+) max_ev_support = 1 # spliced_intron 9004119-9004561 (orient:+) max_ev_support = 1 scaffold_17 + intron 9004119-9004561 asmbl_18184 scaffold_17 + retained_intron 9004119-9004561 asmbl_18182,asmbl_18183 // Retained and Spliced Intron # retained_intron 9004119-9005702 (orient:+) max_ev_support = 1 # spliced_intron 9004119-9005702 (orient:+) max_ev_support = 2 scaffold_17 + intron 9004119-9005702 asmbl_18180,asmbl_18181 scaffold_17 + retained_intron 9004119-9005702 asmbl_18182,asmbl_18183 // Retained and Spliced Intron # retained_intron 9005779-9006436 (orient:+) max_ev_support = 2 # spliced_intron 9005779-9006436 (orient:+) max_ev_support = 2 scaffold_17 + intron 9005779-9006436 asmbl_18180,asmbl_18181,asmbl_18183 scaffold_17 + retained_intron 9005779-9006436 asmbl_18182 // Retained and Spliced Intron # retained_intron 9006765-9006969 (orient:+) max_ev_support = 1 # spliced_intron 9006765-9006969 (orient:+) max_ev_support = 2 scaffold_17 + intron 9006765-9006969 asmbl_18181 scaffold_17 + retained_intron 9006765-9006969 asmbl_18182 // Retained and Spliced Intron # retained_intron 9007049-9007385 (orient:+) max_ev_support = 1 # spliced_intron 9007049-9007385 (orient:+) max_ev_support = 2 scaffold_17 + intron 9007049-9007385 asmbl_18181 scaffold_17 + retained_intron 9007049-9007385 asmbl_18182 // Retained and Spliced Intron # retained_intron 9428864-9428984 (orient:+) max_ev_support = 2 # spliced_intron 9428864-9428984 (orient:+) max_ev_support = 2 scaffold_17 + intron 9428864-9428984 asmbl_18206 scaffold_17 + retained_intron 9428864-9428984 asmbl_18205 // Retained and Spliced Intron # retained_intron 9447461-9447558 (orient:+) max_ev_support = 2 # spliced_intron 9447461-9447558 (orient:+) max_ev_support = 3 scaffold_17 + intron 9447461-9447558 asmbl_18209,asmbl_18210 scaffold_17 + retained_intron 9447461-9447558 asmbl_18211 // Retained and Spliced Intron # retained_intron 9453670-9453880 (orient:+) max_ev_support = 2 # spliced_intron 9453670-9453880 (orient:+) max_ev_support = 3 scaffold_17 + intron 9453670-9453880 asmbl_18207,asmbl_18213 scaffold_17 + retained_intron 9453670-9453880 asmbl_18212,asmbl_18214 // Retained and Spliced Intron # retained_intron 9454795-9455479 (orient:+) max_ev_support = 1 # spliced_intron 9454795-9455479 (orient:+) max_ev_support = 3 scaffold_17 + intron 9454795-9455479 asmbl_18207,asmbl_18209,asmbl_18211,asmbl_18212 scaffold_17 + retained_intron 9454795-9455479 asmbl_18213,asmbl_18214 // Exon Skipping and Retention # skipped_exon 9487827-9488129 (orient:+) max_ev_support = 2 # retained_exon 9487955-9488033 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 9487955-9488033 asmbl_18218,asmbl_18219,asmbl_18222 scaffold_17 + intron_skips_exon 9487827-9488129 asmbl_18217,asmbl_18223 // Retained and Spliced Intron # retained_intron 9531029-9531393 (orient:+) max_ev_support = 3 # spliced_intron 9531029-9531393 (orient:+) max_ev_support = 3 scaffold_17 + intron 9531029-9531393 asmbl_18230 scaffold_17 + retained_intron 9531029-9531393 asmbl_18228,asmbl_18234 // Exon Skipping and Retention # skipped_exon 9531820-9532877 (orient:+) max_ev_support = 2 # retained_exon 9532392-9532451 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 9532392-9532451 asmbl_18229,asmbl_18230,asmbl_18232 scaffold_17 + intron_skips_exon 9531820-9532877 asmbl_18228,asmbl_18233 // Exon Skipping and Retention # skipped_exon 9529492-9531393 (orient:+) max_ev_support = 3 # retained_exon 9530712-9531028 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 9530712-9531028 asmbl_18230 scaffold_17 + intron_skips_exon 9529492-9531393 asmbl_18229,asmbl_18232,asmbl_18233,asmbl_18235,asmbl_18236 // Retained and Spliced Intron # retained_intron 9533790-9533896 (orient:+) max_ev_support = 2 # spliced_intron 9533790-9533896 (orient:+) max_ev_support = 3 scaffold_17 + intron 9533790-9533896 asmbl_18228,asmbl_18229,asmbl_18230,asmbl_18231,asmbl_18235 scaffold_17 + retained_intron 9533790-9533896 asmbl_18232,asmbl_18236 // Retained and Spliced Intron # retained_intron 9533968-9534048 (orient:+) max_ev_support = 2 # spliced_intron 9533968-9534048 (orient:+) max_ev_support = 3 scaffold_17 + intron 9533968-9534048 asmbl_18228,asmbl_18229,asmbl_18230,asmbl_18231,asmbl_18235 scaffold_17 + retained_intron 9533968-9534048 asmbl_18232,asmbl_18236 // Retained and Spliced Intron # retained_intron 9531820-9532391 (orient:+) max_ev_support = 1 # spliced_intron 9531820-9532391 (orient:+) max_ev_support = 3 scaffold_17 + intron 9531820-9532391 asmbl_18229,asmbl_18230,asmbl_18232 scaffold_17 + retained_intron 9531820-9532391 asmbl_18235,asmbl_18236 // Retained and Spliced Intron # retained_intron 9531820-9532877 (orient:+) max_ev_support = 1 # spliced_intron 9531820-9532877 (orient:+) max_ev_support = 2 scaffold_17 + intron 9531820-9532877 asmbl_18228,asmbl_18233 scaffold_17 + retained_intron 9531820-9532877 asmbl_18235,asmbl_18236 // Retained and Spliced Intron # retained_intron 9532452-9532877 (orient:+) max_ev_support = 1 # spliced_intron 9532452-9532877 (orient:+) max_ev_support = 3 scaffold_17 + intron 9532452-9532877 asmbl_18229,asmbl_18230,asmbl_18232 scaffold_17 + retained_intron 9532452-9532877 asmbl_18235,asmbl_18236 // Exon Skipping and Retention # skipped_exon 9570215-9571436 (orient:+) max_ev_support = 2 # retained_exon 9570412-9570707 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 9570412-9570470,9570628-9570707 asmbl_18244 scaffold_17 + intron_skips_exon 9570215-9571436 asmbl_18243 // Retained and Spliced Intron # retained_intron 9942619-9942696 (orient:+) max_ev_support = 1 # spliced_intron 9942619-9942696 (orient:+) max_ev_support = 2 scaffold_17 + intron 9942619-9942696 asmbl_18254,asmbl_18255 scaffold_17 + retained_intron 9942619-9942696 asmbl_18258,asmbl_18259 // Exon Skipping and Retention # skipped_exon 9972037-9974021 (orient:+) max_ev_support = 1 # retained_exon 9973649-9973666 (orient:+) max_ev_support = 1 scaffold_17 + retained_exons 9973649-9973666 asmbl_18269,asmbl_18270 scaffold_17 + intron_skips_exon 9972037-9974021 asmbl_18268 // Retained and Spliced Intron # retained_intron 10029016-10029173 (orient:+) max_ev_support = 2 # spliced_intron 10029016-10029173 (orient:+) max_ev_support = 1 scaffold_17 + intron 10029016-10029173 asmbl_18281 scaffold_17 + retained_intron 10029016-10029173 asmbl_18280 // Retained and Spliced Intron # retained_intron 10048773-10050113 (orient:+) max_ev_support = 5 # spliced_intron 10048773-10050113 (orient:+) max_ev_support = 2 scaffold_17 + intron 10048773-10050113 asmbl_18287 scaffold_17 + retained_intron 10048773-10050113 asmbl_18285 // Retained and Spliced Intron # retained_intron 10048773-10050204 (orient:+) max_ev_support = 5 # spliced_intron 10048773-10050204 (orient:+) max_ev_support = 2 scaffold_17 + intron 10048773-10050204 asmbl_18286 scaffold_17 + retained_intron 10048773-10050204 asmbl_18285 // Retained and Spliced Intron # retained_intron 10050035-10050204 (orient:+) max_ev_support = 2 # spliced_intron 10050035-10050204 (orient:+) max_ev_support = 1 scaffold_17 + intron 10050035-10050204 asmbl_18289 scaffold_17 + retained_intron 10050035-10050204 asmbl_18285,asmbl_18288 // Retained and Spliced Intron # retained_intron 10050958-10051155 (orient:+) max_ev_support = 2 # spliced_intron 10050958-10051155 (orient:+) max_ev_support = 2 scaffold_17 + intron 10050958-10051155 asmbl_18286 scaffold_17 + retained_intron 10050958-10051155 asmbl_18285,asmbl_18287,asmbl_18288,asmbl_18289 // Retained and Spliced Intron # retained_intron 10050378-10050476 (orient:+) max_ev_support = 2 # spliced_intron 10050378-10050476 (orient:+) max_ev_support = 1 scaffold_17 + intron 10050378-10050476 asmbl_18285 scaffold_17 + retained_intron 10050378-10050476 asmbl_18287,asmbl_18288,asmbl_18289 // Retained and Spliced Intron # retained_intron 10050378-10050855 (orient:+) max_ev_support = 2 # spliced_intron 10050378-10050855 (orient:+) max_ev_support = 2 scaffold_17 + intron 10050378-10050855 asmbl_18286 scaffold_17 + retained_intron 10050378-10050855 asmbl_18287,asmbl_18288,asmbl_18289 // Retained and Spliced Intron # retained_intron 10097780-10097808 (orient:+) max_ev_support = 3 # spliced_intron 10097780-10097808 (orient:+) max_ev_support = 1 scaffold_17 + intron 10097780-10097808 asmbl_18301 scaffold_17 + retained_intron 10097780-10097808 asmbl_18300 // Retained and Spliced Intron # retained_intron 11050768-11050865 (orient:+) max_ev_support = 3 # spliced_intron 11050768-11050865 (orient:+) max_ev_support = 1 scaffold_17 + intron 11050768-11050865 asmbl_18325 scaffold_17 + retained_intron 11050768-11050865 asmbl_18323,asmbl_18324 // Retained and Spliced Intron # retained_intron 11508780-11509171 (orient:+) max_ev_support = 2 # spliced_intron 11508780-11509171 (orient:+) max_ev_support = 2 scaffold_17 + intron 11508780-11509171 asmbl_18351 scaffold_17 + retained_intron 11508780-11509171 asmbl_18353 // Retained and Spliced Intron # retained_intron 11567714-11567734 (orient:+) max_ev_support = 1 # spliced_intron 11567714-11567734 (orient:+) max_ev_support = 1 scaffold_17 + intron 11567714-11567734 asmbl_18363 scaffold_17 + retained_intron 11567714-11567734 asmbl_18359,asmbl_18360,asmbl_18361 // Retained and Spliced Intron # retained_intron 11568197-11568238 (orient:+) max_ev_support = 1 # spliced_intron 11568197-11568238 (orient:+) max_ev_support = 1 scaffold_17 + intron 11568197-11568238 asmbl_18359,asmbl_18360 scaffold_17 + retained_intron 11568197-11568238 asmbl_18361,asmbl_18362 // Retained and Spliced Intron # retained_intron 12090439-12090468 (orient:+) max_ev_support = 1 # spliced_intron 12090439-12090468 (orient:+) max_ev_support = 1 scaffold_17 + intron 12090439-12090468 asmbl_18381 scaffold_17 + retained_intron 12090439-12090468 asmbl_18380 // Retained and Spliced Intron # retained_intron 12142249-12142794 (orient:+) max_ev_support = 3 # spliced_intron 12142249-12142794 (orient:+) max_ev_support = 2 scaffold_17 + intron 12142249-12142794 asmbl_18390 scaffold_17 + retained_intron 12142249-12142794 asmbl_18389 // Exon Skipping and Retention # skipped_exon 12169998-12172330 (orient:+) max_ev_support = 2 # retained_exon 12170856-12170949 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 12170856-12170949 asmbl_18392 scaffold_17 + intron_skips_exon 12169998-12172330 asmbl_18393 // Retained and Spliced Intron # retained_intron 12187281-12187379 (orient:+) max_ev_support = 2 # spliced_intron 12187281-12187379 (orient:+) max_ev_support = 2 scaffold_17 + intron 12187281-12187379 asmbl_18397 scaffold_17 + retained_intron 12187281-12187379 asmbl_18398 // Exon Skipping and Retention # skipped_exon 12198250-12200487 (orient:+) max_ev_support = 1 # retained_exon 12199388-12199478 (orient:+) max_ev_support = 2 scaffold_17 + retained_exons 12199388-12199478 asmbl_18402 scaffold_17 + intron_skips_exon 12198250-12200487 asmbl_18403 // Retained and Spliced Intron # retained_intron 13048788-13049071 (orient:+) max_ev_support = 2 # spliced_intron 13048788-13049071 (orient:+) max_ev_support = 2 scaffold_17 + intron 13048788-13049071 asmbl_18430 scaffold_17 + retained_intron 13048788-13049071 asmbl_18431 // Retained and Spliced Intron # retained_intron 13084889-13085573 (orient:+) max_ev_support = 5 # spliced_intron 13084889-13085573 (orient:+) max_ev_support = 2 scaffold_17 + intron 13084889-13085573 asmbl_18435 scaffold_17 + retained_intron 13084889-13085573 asmbl_18434 // Exon Skipping and Retention # skipped_exon 13087139-13087807 (orient:+) max_ev_support = 2 # retained_exon 13087497-13087527 (orient:+) max_ev_support = 3 scaffold_17 + retained_exons 13087497-13087527 asmbl_18437 scaffold_17 + intron_skips_exon 13087139-13087807 asmbl_18438 // Retained and Spliced Intron # retained_intron 13957425-13957742 (orient:+) max_ev_support = 2 # spliced_intron 13957425-13957742 (orient:+) max_ev_support = 5 scaffold_17 + intron 13957425-13957742 asmbl_18485 scaffold_17 + retained_intron 13957425-13957742 asmbl_18486 // Retained and Spliced Intron # retained_intron 14040941-14041125 (orient:+) max_ev_support = 2 # spliced_intron 14040941-14041125 (orient:+) max_ev_support = 1 scaffold_17 + intron 14040941-14041125 asmbl_18495 scaffold_17 + retained_intron 14040941-14041125 asmbl_18494 // Retained and Spliced Intron # retained_intron 14040943-14041125 (orient:+) max_ev_support = 2 # spliced_intron 14040943-14041125 (orient:+) max_ev_support = 1 scaffold_17 + intron 14040943-14041125 asmbl_18496 scaffold_17 + retained_intron 14040943-14041125 asmbl_18494 // Retained and Spliced Intron # retained_intron 14380546-14380566 (orient:+) max_ev_support = 1 # spliced_intron 14380546-14380566 (orient:+) max_ev_support = 1 scaffold_17 + intron 14380546-14380566 asmbl_18515 scaffold_17 + retained_intron 14380546-14380566 asmbl_18518 // Retained and Spliced Intron # retained_intron 14546159-14546293 (orient:+) max_ev_support = 4 # spliced_intron 14546159-14546293 (orient:+) max_ev_support = 1 scaffold_17 + intron 14546159-14546293 asmbl_18531 scaffold_17 + retained_intron 14546159-14546293 asmbl_18528 // Retained and Spliced Intron # retained_intron 14546213-14546320 (orient:+) max_ev_support = 4 # spliced_intron 14546213-14546320 (orient:+) max_ev_support = 1 scaffold_17 + intron 14546213-14546320 asmbl_18532 scaffold_17 + retained_intron 14546213-14546320 asmbl_18528 // Retained and Spliced Intron # retained_intron 14546213-14546347 (orient:+) max_ev_support = 4 # spliced_intron 14546213-14546347 (orient:+) max_ev_support = 1 scaffold_17 + intron 14546213-14546347 asmbl_18530 scaffold_17 + retained_intron 14546213-14546347 asmbl_18528 // Retained and Spliced Intron # retained_intron 14546294-14546320 (orient:+) max_ev_support = 4 # spliced_intron 14546294-14546320 (orient:+) max_ev_support = 2 scaffold_17 + intron 14546294-14546320 asmbl_18529 scaffold_17 + retained_intron 14546294-14546320 asmbl_18528 // Retained and Spliced Intron # retained_intron 14633326-14633465 (orient:+) max_ev_support = 1 # spliced_intron 14633326-14633465 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633326-14633465 asmbl_18537 scaffold_17 + retained_intron 14633326-14633465 asmbl_18533 // Retained and Spliced Intron # retained_intron 14633346-14633405 (orient:+) max_ev_support = 1 # spliced_intron 14633346-14633405 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633346-14633405 asmbl_18535 scaffold_17 + retained_intron 14633346-14633405 asmbl_18533 // Retained and Spliced Intron # retained_intron 14633366-14633405 (orient:+) max_ev_support = 1 # spliced_intron 14633366-14633405 (orient:+) max_ev_support = 1 scaffold_17 + intron 14633366-14633405 asmbl_18534 scaffold_17 + retained_intron 14633366-14633405 asmbl_18533 // Retained and Spliced Intron # retained_intron 14729874-14729921 (orient:+) max_ev_support = 3 # spliced_intron 14729874-14729921 (orient:+) max_ev_support = 1 scaffold_17 + intron 14729874-14729921 asmbl_18541 scaffold_17 + retained_intron 14729874-14729921 asmbl_18540 // Retained and Spliced Intron # retained_intron 14874491-14874578 (orient:+) max_ev_support = 1 # spliced_intron 14874491-14874578 (orient:+) max_ev_support = 1 scaffold_17 + intron 14874491-14874578 asmbl_18547 scaffold_17 + retained_intron 14874491-14874578 asmbl_18548 // Retained and Spliced Intron # retained_intron 477860-478200 (orient:-) max_ev_support = 1 # spliced_intron 477860-478200 (orient:-) max_ev_support = 2 scaffold_17 - intron 477860-478200 asmbl_18665 scaffold_17 - retained_intron 477860-478200 asmbl_18666 // Exon Skipping and Retention # skipped_exon 603900-606582 (orient:-) max_ev_support = 1 # retained_exon 604457-604498 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 604457-604498 asmbl_18673,asmbl_18674 scaffold_17 - intron_skips_exon 603900-606582 asmbl_18675 // Exon Skipping and Retention # skipped_exon 607337-608734 (orient:-) max_ev_support = 1 # retained_exon 607924-607947 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 607924-607947 asmbl_18673,asmbl_18675 scaffold_17 - intron_skips_exon 607337-608734 asmbl_18674 // Retained and Spliced Intron # retained_intron 680623-680807 (orient:-) max_ev_support = 1 # spliced_intron 680623-680807 (orient:-) max_ev_support = 2 scaffold_17 - intron 680623-680807 asmbl_18684,asmbl_18685,asmbl_18686,asmbl_18688,asmbl_18689 scaffold_17 - retained_intron 680623-680807 asmbl_18687 // Retained and Spliced Intron # retained_intron 1054282-1054550 (orient:-) max_ev_support = 2 # spliced_intron 1054282-1054550 (orient:-) max_ev_support = 1 scaffold_17 - intron 1054282-1054550 asmbl_18711 scaffold_17 - retained_intron 1054282-1054550 asmbl_18710 // Retained and Spliced Intron # retained_intron 1054915-1055189 (orient:-) max_ev_support = 2 # spliced_intron 1054915-1055189 (orient:-) max_ev_support = 2 scaffold_17 - intron 1054915-1055189 asmbl_18712 scaffold_17 - retained_intron 1054915-1055189 asmbl_18713 // Retained and Spliced Intron # retained_intron 1087302-1087367 (orient:-) max_ev_support = 1 # spliced_intron 1087302-1087367 (orient:-) max_ev_support = 1 scaffold_17 - intron 1087302-1087367 asmbl_18716 scaffold_17 - retained_intron 1087302-1087367 asmbl_18717 // Retained and Spliced Intron # retained_intron 1291368-1292422 (orient:-) max_ev_support = 2 # spliced_intron 1291368-1292422 (orient:-) max_ev_support = 2 scaffold_17 - intron 1291368-1292422 asmbl_18727,asmbl_18729 scaffold_17 - retained_intron 1291368-1292422 asmbl_18726 // Retained and Spliced Intron # retained_intron 1292002-1292412 (orient:-) max_ev_support = 2 # spliced_intron 1292002-1292412 (orient:-) max_ev_support = 2 scaffold_17 - intron 1292002-1292412 asmbl_18725 scaffold_17 - retained_intron 1292002-1292412 asmbl_18726 // Retained and Spliced Intron # retained_intron 1292002-1292436 (orient:-) max_ev_support = 2 # spliced_intron 1292002-1292436 (orient:-) max_ev_support = 2 scaffold_17 - intron 1292002-1292436 asmbl_18724 scaffold_17 - retained_intron 1292002-1292436 asmbl_18726 // Retained and Spliced Intron # retained_intron 1289822-1289896 (orient:-) max_ev_support = 2 # spliced_intron 1289822-1289896 (orient:-) max_ev_support = 2 scaffold_17 - intron 1289822-1289896 asmbl_18724,asmbl_18725,asmbl_18726,asmbl_18727 scaffold_17 - retained_intron 1289822-1289896 asmbl_18728,asmbl_18729 // Retained and Spliced Intron # retained_intron 1290559-1290651 (orient:-) max_ev_support = 1 # spliced_intron 1290559-1290651 (orient:-) max_ev_support = 1 scaffold_17 - intron 1290559-1290651 asmbl_18730 scaffold_17 - retained_intron 1290559-1290651 asmbl_18731 // Exon Skipping and Retention # skipped_exon 1302758-1303353 (orient:-) max_ev_support = 1 # retained_exon 1302874-1302916 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 1302874-1302916 asmbl_18737,asmbl_18739,asmbl_18740 scaffold_17 - intron_skips_exon 1302758-1303353 asmbl_18741 // Retained and Spliced Intron # retained_intron 1304001-1304135 (orient:-) max_ev_support = 1 # spliced_intron 1304001-1304135 (orient:-) max_ev_support = 2 scaffold_17 - intron 1304001-1304135 asmbl_18737,asmbl_18740,asmbl_18741,asmbl_18743,asmbl_18745 scaffold_17 - retained_intron 1304001-1304135 asmbl_18739,asmbl_18744 // Retained and Spliced Intron # retained_intron 1304202-1304506 (orient:-) max_ev_support = 1 # spliced_intron 1304202-1304506 (orient:-) max_ev_support = 2 scaffold_17 - intron 1304202-1304506 asmbl_18737,asmbl_18739,asmbl_18741,asmbl_18743,asmbl_18744 scaffold_17 - retained_intron 1304202-1304506 asmbl_18740,asmbl_18745 // Retained and Spliced Intron # retained_intron 1303722-1303950 (orient:-) max_ev_support = 1 # spliced_intron 1303722-1303950 (orient:-) max_ev_support = 2 scaffold_17 - intron 1303722-1303950 asmbl_18737,asmbl_18739,asmbl_18740,asmbl_18741,asmbl_18743,asmbl_18745 scaffold_17 - retained_intron 1303722-1303950 asmbl_18744 // Retained and Spliced Intron # retained_intron 1360485-1360559 (orient:-) max_ev_support = 1 # spliced_intron 1360485-1360559 (orient:-) max_ev_support = 1 scaffold_17 - intron 1360485-1360559 asmbl_18749,asmbl_18750 scaffold_17 - retained_intron 1360485-1360559 asmbl_18748 // Retained and Spliced Intron # retained_intron 1512991-1513501 (orient:-) max_ev_support = 2 # spliced_intron 1512991-1513501 (orient:-) max_ev_support = 2 scaffold_17 - intron 1512991-1513501 asmbl_18763,asmbl_18766 scaffold_17 - retained_intron 1512991-1513501 asmbl_18765 // Retained and Spliced Intron # retained_intron 1512243-1512407 (orient:-) max_ev_support = 1 # spliced_intron 1512243-1512407 (orient:-) max_ev_support = 2 scaffold_17 - intron 1512243-1512407 asmbl_18763 scaffold_17 - retained_intron 1512243-1512407 asmbl_18766 // Retained and Spliced Intron # retained_intron 2535887-2536718 (orient:-) max_ev_support = 2 # spliced_intron 2535887-2536718 (orient:-) max_ev_support = 2 scaffold_17 - intron 2535887-2536718 asmbl_18801,asmbl_18804,asmbl_18805,asmbl_18806 scaffold_17 - retained_intron 2535887-2536718 asmbl_18800 // Retained and Spliced Intron # retained_intron 2533988-2534159 (orient:-) max_ev_support = 1 # spliced_intron 2533988-2534159 (orient:-) max_ev_support = 2 scaffold_17 - intron 2533988-2534159 asmbl_18800,asmbl_18801,asmbl_18803 scaffold_17 - retained_intron 2533988-2534159 asmbl_18804 // Retained and Spliced Intron # retained_intron 2740165-2740685 (orient:-) max_ev_support = 3 # spliced_intron 2740165-2740685 (orient:-) max_ev_support = 2 scaffold_17 - intron 2740165-2740685 asmbl_18825 scaffold_17 - retained_intron 2740165-2740685 asmbl_18824 // Exon Skipping and Retention # skipped_exon 2740165-2740935 (orient:-) max_ev_support = 1 # retained_exon 2740686-2740806 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 2740686-2740806 asmbl_18825 scaffold_17 - intron_skips_exon 2740165-2740935 asmbl_18826 // Retained and Spliced Intron # retained_intron 3141752-3141861 (orient:-) max_ev_support = 1 # spliced_intron 3141752-3141861 (orient:-) max_ev_support = 2 scaffold_17 - intron 3141752-3141861 asmbl_18846 scaffold_17 - retained_intron 3141752-3141861 asmbl_18844 // Retained and Spliced Intron # retained_intron 3142038-3142233 (orient:-) max_ev_support = 3 # spliced_intron 3142038-3142233 (orient:-) max_ev_support = 2 scaffold_17 - intron 3142038-3142233 asmbl_18846 scaffold_17 - retained_intron 3142038-3142233 asmbl_18844 // Retained and Spliced Intron # retained_intron 3986624-3986812 (orient:-) max_ev_support = 3 # spliced_intron 3986624-3986812 (orient:-) max_ev_support = 1 scaffold_17 - intron 3986624-3986812 asmbl_18879,asmbl_18880 scaffold_17 - retained_intron 3986624-3986812 asmbl_18878 // Retained and Spliced Intron # retained_intron 3990599-3990682 (orient:-) max_ev_support = 2 # spliced_intron 3990599-3990682 (orient:-) max_ev_support = 2 scaffold_17 - intron 3990599-3990682 asmbl_18882 scaffold_17 - retained_intron 3990599-3990682 asmbl_18881 // Retained and Spliced Intron # retained_intron 3989814-3990042 (orient:-) max_ev_support = 1 # spliced_intron 3989814-3990042 (orient:-) max_ev_support = 2 scaffold_17 - intron 3989814-3990042 asmbl_18881,asmbl_18882 scaffold_17 - retained_intron 3989814-3990042 asmbl_18884 // Retained and Spliced Intron # retained_intron 3990087-3990195 (orient:-) max_ev_support = 1 # spliced_intron 3990087-3990195 (orient:-) max_ev_support = 2 scaffold_17 - intron 3990087-3990195 asmbl_18881,asmbl_18882,asmbl_18883 scaffold_17 - retained_intron 3990087-3990195 asmbl_18884 // Retained and Spliced Intron # retained_intron 4185297-4186012 (orient:-) max_ev_support = 5 # spliced_intron 4185297-4186012 (orient:-) max_ev_support = 2 scaffold_17 - intron 4185297-4186012 asmbl_18887,asmbl_18888 scaffold_17 - retained_intron 4185297-4186012 asmbl_18886 // Retained and Spliced Intron # retained_intron 4186382-4186772 (orient:-) max_ev_support = 2 # spliced_intron 4186382-4186772 (orient:-) max_ev_support = 1 scaffold_17 - intron 4186382-4186772 asmbl_18886 scaffold_17 - retained_intron 4186382-4186772 asmbl_18887 // Retained and Spliced Intron # retained_intron 4186382-4186960 (orient:-) max_ev_support = 2 # spliced_intron 4186382-4186960 (orient:-) max_ev_support = 2 scaffold_17 - intron 4186382-4186960 asmbl_18888 scaffold_17 - retained_intron 4186382-4186960 asmbl_18887 // Retained and Spliced Intron # retained_intron 5124487-5126010 (orient:-) max_ev_support = 3 # spliced_intron 5124487-5126010 (orient:-) max_ev_support = 1 scaffold_17 - intron 5124487-5126010 asmbl_18959 scaffold_17 - retained_intron 5124487-5126010 asmbl_18957 // Retained and Spliced Intron # retained_intron 5137331-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5137331-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5137331-5138143 asmbl_18961 scaffold_17 - retained_intron 5137331-5138143 asmbl_18963,asmbl_18964 // Retained and Spliced Intron # retained_intron 5137391-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5137391-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5137391-5138143 asmbl_18962 scaffold_17 - retained_intron 5137391-5138143 asmbl_18963,asmbl_18964 // Retained and Spliced Intron # retained_intron 5138001-5138143 (orient:-) max_ev_support = 1 # spliced_intron 5138001-5138143 (orient:-) max_ev_support = 2 scaffold_17 - intron 5138001-5138143 asmbl_18960 scaffold_17 - retained_intron 5138001-5138143 asmbl_18963,asmbl_18964 // Retained and Spliced Intron # retained_intron 5403268-5403361 (orient:-) max_ev_support = 2 # spliced_intron 5403268-5403361 (orient:-) max_ev_support = 1 scaffold_17 - intron 5403268-5403361 asmbl_18973 scaffold_17 - retained_intron 5403268-5403361 asmbl_18972 // Exon Skipping and Retention # skipped_exon 5489357-5490876 (orient:-) max_ev_support = 1 # retained_exon 5490393-5490524 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 5490393-5490524 asmbl_18979 scaffold_17 - intron_skips_exon 5489357-5490876 asmbl_18980 // Retained and Spliced Intron # retained_intron 5710589-5710711 (orient:-) max_ev_support = 2 # spliced_intron 5710589-5710711 (orient:-) max_ev_support = 1 scaffold_17 - intron 5710589-5710711 asmbl_18992 scaffold_17 - retained_intron 5710589-5710711 asmbl_18988,asmbl_18989,asmbl_18990,asmbl_18991 // Retained and Spliced Intron # retained_intron 5711015-5711316 (orient:-) max_ev_support = 2 # spliced_intron 5711015-5711316 (orient:-) max_ev_support = 1 scaffold_17 - intron 5711015-5711316 asmbl_18989,asmbl_18990,asmbl_18992 scaffold_17 - retained_intron 5711015-5711316 asmbl_18988,asmbl_18991 // Retained and Spliced Intron # retained_intron 5711677-5712050 (orient:-) max_ev_support = 1 # spliced_intron 5711677-5712050 (orient:-) max_ev_support = 2 scaffold_17 - intron 5711677-5712050 asmbl_18988,asmbl_18989,asmbl_18992 scaffold_17 - retained_intron 5711677-5712050 asmbl_18990,asmbl_18991 // Exon Skipping and Retention # skipped_exon 6203941-6205818 (orient:-) max_ev_support = 2 # retained_exon 6204733-6204817 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 6204733-6204817 asmbl_19017,asmbl_19018 scaffold_17 - intron_skips_exon 6203941-6205818 asmbl_19019 // Retained and Spliced Intron # retained_intron 6803623-6804157 (orient:-) max_ev_support = 1 # spliced_intron 6803623-6804157 (orient:-) max_ev_support = 1 scaffold_17 - intron 6803623-6804157 asmbl_19029 scaffold_17 - retained_intron 6803623-6804157 asmbl_19030 // Retained and Spliced Intron # retained_intron 6975317-6976246 (orient:-) max_ev_support = 1 # spliced_intron 6975317-6976246 (orient:-) max_ev_support = 2 scaffold_17 - intron 6975317-6976246 asmbl_19053 scaffold_17 - retained_intron 6975317-6976246 asmbl_19054,asmbl_19055 // Retained and Spliced Intron # retained_intron 7006596-7009068 (orient:-) max_ev_support = 2 # spliced_intron 7006596-7009068 (orient:-) max_ev_support = 3 scaffold_17 - intron 7006596-7009068 asmbl_19058,asmbl_19060 scaffold_17 - retained_intron 7006596-7009068 asmbl_19059 // Retained and Spliced Intron # retained_intron 7038519-7038718 (orient:-) max_ev_support = 1 # spliced_intron 7038519-7038718 (orient:-) max_ev_support = 2 scaffold_17 - intron 7038519-7038718 asmbl_19064 scaffold_17 - retained_intron 7038519-7038718 asmbl_19065 // Retained and Spliced Intron # retained_intron 7116861-7117011 (orient:-) max_ev_support = 3 # spliced_intron 7116861-7117011 (orient:-) max_ev_support = 3 scaffold_17 - intron 7116861-7117011 asmbl_19082,asmbl_19085 scaffold_17 - retained_intron 7116861-7117011 asmbl_19083,asmbl_19084 // Exon Skipping and Retention # skipped_exon 7959936-7960883 (orient:-) max_ev_support = 2 # retained_exon 7960323-7960383 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 7960323-7960383 asmbl_19105 scaffold_17 - intron_skips_exon 7959936-7960883 asmbl_19104 // Retained and Spliced Intron # retained_intron 7965060-7965092 (orient:-) max_ev_support = 2 # spliced_intron 7965060-7965092 (orient:-) max_ev_support = 1 scaffold_17 - intron 7965060-7965092 asmbl_19108 scaffold_17 - retained_intron 7965060-7965092 asmbl_19106,asmbl_19107 // Retained and Spliced Intron # retained_intron 8044838-8044930 (orient:-) max_ev_support = 2 # spliced_intron 8044838-8044930 (orient:-) max_ev_support = 2 scaffold_17 - intron 8044838-8044930 asmbl_19112 scaffold_17 - retained_intron 8044838-8044930 asmbl_19111,asmbl_19113 // Retained and Spliced Intron # retained_intron 8210415-8210511 (orient:-) max_ev_support = 1 # spliced_intron 8210415-8210511 (orient:-) max_ev_support = 2 scaffold_17 - intron 8210415-8210511 asmbl_19123 scaffold_17 - retained_intron 8210415-8210511 asmbl_19126 // Retained and Spliced Intron # retained_intron 8210415-8210546 (orient:-) max_ev_support = 1 # spliced_intron 8210415-8210546 (orient:-) max_ev_support = 2 scaffold_17 - intron 8210415-8210546 asmbl_19124 scaffold_17 - retained_intron 8210415-8210546 asmbl_19126 // Exon Skipping and Retention # skipped_exon 8216381-8219279 (orient:-) max_ev_support = 2 # retained_exon 8218986-8219038 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 8218986-8219038 asmbl_19129 scaffold_17 - intron_skips_exon 8216381-8219279 asmbl_19127 // Retained and Spliced Intron # retained_intron 8303687-8303849 (orient:-) max_ev_support = 1 # spliced_intron 8303687-8303849 (orient:-) max_ev_support = 2 scaffold_17 - intron 8303687-8303849 asmbl_19132,asmbl_19133 scaffold_17 - retained_intron 8303687-8303849 asmbl_19134 // Exon Skipping and Retention # skipped_exon 8605578-8605835 (orient:-) max_ev_support = 3 # retained_exon 8605674-8605727 (orient:-) max_ev_support = 3 scaffold_17 - retained_exons 8605674-8605727 asmbl_19151 scaffold_17 - intron_skips_exon 8605578-8605835 asmbl_19150 // Retained and Spliced Intron # retained_intron 8640140-8640241 (orient:-) max_ev_support = 1 # spliced_intron 8640140-8640241 (orient:-) max_ev_support = 2 scaffold_17 - intron 8640140-8640241 asmbl_19155 scaffold_17 - retained_intron 8640140-8640241 asmbl_19156 // Retained and Spliced Intron # retained_intron 8871672-8871801 (orient:-) max_ev_support = 2 # spliced_intron 8871672-8871801 (orient:-) max_ev_support = 2 scaffold_17 - intron 8871672-8871801 asmbl_19178,asmbl_19179 scaffold_17 - retained_intron 8871672-8871801 asmbl_19177 // Retained and Spliced Intron # retained_intron 9029724-9030391 (orient:-) max_ev_support = 2 # spliced_intron 9029724-9030391 (orient:-) max_ev_support = 2 scaffold_17 - intron 9029724-9030391 asmbl_19186,asmbl_19189,asmbl_19190,asmbl_19191 scaffold_17 - retained_intron 9029724-9030391 asmbl_19187 // Retained and Spliced Intron # retained_intron 9030443-9030964 (orient:-) max_ev_support = 2 # spliced_intron 9030443-9030964 (orient:-) max_ev_support = 2 scaffold_17 - intron 9030443-9030964 asmbl_19186,asmbl_19189,asmbl_19190,asmbl_19191 scaffold_17 - retained_intron 9030443-9030964 asmbl_19187 // Exon Skipping and Retention # skipped_exon 9032238-9033472 (orient:-) max_ev_support = 1 # retained_exon 9033136-9033165 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 9033136-9033165 asmbl_19188,asmbl_19189,asmbl_19191 scaffold_17 - intron_skips_exon 9032238-9033472 asmbl_19190,asmbl_19192 // Exon Skipping and Retention # skipped_exon 9029724-9031727 (orient:-) max_ev_support = 1 # retained_exon 9030392-9031033 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 9030392-9030442,9030965-9031033 asmbl_19189,asmbl_19190,asmbl_19191 scaffold_17 - intron_skips_exon 9029724-9031727 asmbl_19188,asmbl_19192 // Retained and Spliced Intron # retained_intron 9088832-9088926 (orient:-) max_ev_support = 2 # spliced_intron 9088832-9088926 (orient:-) max_ev_support = 1 scaffold_17 - intron 9088832-9088926 asmbl_19197,asmbl_19198 scaffold_17 - retained_intron 9088832-9088926 asmbl_19196,asmbl_19199 // Retained and Spliced Intron # retained_intron 9095446-9095758 (orient:-) max_ev_support = 1 # spliced_intron 9095446-9095758 (orient:-) max_ev_support = 2 scaffold_17 - intron 9095446-9095758 asmbl_19201 scaffold_17 - retained_intron 9095446-9095758 asmbl_19202 // Retained and Spliced Intron # retained_intron 9592999-9593177 (orient:-) max_ev_support = 1 # spliced_intron 9592999-9593177 (orient:-) max_ev_support = 3 scaffold_17 - intron 9592999-9593177 asmbl_19228,asmbl_19230 scaffold_17 - retained_intron 9592999-9593177 asmbl_19229,asmbl_19231 // Exon Skipping and Retention # skipped_exon 9826533-9829262 (orient:-) max_ev_support = 1 # retained_exon 9827344-9827415 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 9827344-9827415 asmbl_19244,asmbl_19245 scaffold_17 - intron_skips_exon 9826533-9829262 asmbl_19246,asmbl_19247,asmbl_19248,asmbl_19249 // Retained and Spliced Intron # retained_intron 9854049-9854615 (orient:-) max_ev_support = 3 # spliced_intron 9854049-9854615 (orient:-) max_ev_support = 2 scaffold_17 - intron 9854049-9854615 asmbl_19257 scaffold_17 - retained_intron 9854049-9854615 asmbl_19255 // Retained and Spliced Intron # retained_intron 9867881-9867999 (orient:-) max_ev_support = 1 # spliced_intron 9867881-9867999 (orient:-) max_ev_support = 1 scaffold_17 - intron 9867881-9867999 asmbl_19261,asmbl_19262 scaffold_17 - retained_intron 9867881-9867999 asmbl_19259,asmbl_19260,asmbl_19263 // Retained and Spliced Intron # retained_intron 9868140-9868228 (orient:-) max_ev_support = 1 # spliced_intron 9868140-9868228 (orient:-) max_ev_support = 1 scaffold_17 - intron 9868140-9868228 asmbl_19259,asmbl_19261,asmbl_19262 scaffold_17 - retained_intron 9868140-9868228 asmbl_19260,asmbl_19263 // Retained and Spliced Intron # retained_intron 9868526-9868619 (orient:-) max_ev_support = 1 # spliced_intron 9868526-9868619 (orient:-) max_ev_support = 1 scaffold_17 - intron 9868526-9868619 asmbl_19259,asmbl_19260,asmbl_19261,asmbl_19262 scaffold_17 - retained_intron 9868526-9868619 asmbl_19263 // Retained and Spliced Intron # retained_intron 10037011-10037314 (orient:-) max_ev_support = 3 # spliced_intron 10037011-10037314 (orient:-) max_ev_support = 2 scaffold_17 - intron 10037011-10037314 asmbl_19273 scaffold_17 - retained_intron 10037011-10037314 asmbl_19271,asmbl_19277 // Retained and Spliced Intron # retained_intron 10037074-10037314 (orient:-) max_ev_support = 3 # spliced_intron 10037074-10037314 (orient:-) max_ev_support = 3 scaffold_17 - intron 10037074-10037314 asmbl_19272,asmbl_19275 scaffold_17 - retained_intron 10037074-10037314 asmbl_19271,asmbl_19277 // Retained and Spliced Intron # retained_intron 10037074-10037504 (orient:-) max_ev_support = 3 # spliced_intron 10037074-10037504 (orient:-) max_ev_support = 1 scaffold_17 - intron 10037074-10037504 asmbl_19274 scaffold_17 - retained_intron 10037074-10037504 asmbl_19271 // Exon Skipping and Retention # skipped_exon 10037074-10038902 (orient:-) max_ev_support = 1 # retained_exon 10037315-10037339 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 10037315-10037339 asmbl_19275 scaffold_17 - intron_skips_exon 10037074-10038902 asmbl_19276 // Retained and Spliced Intron # retained_intron 10240432-10240572 (orient:-) max_ev_support = 3 # spliced_intron 10240432-10240572 (orient:-) max_ev_support = 3 scaffold_17 - intron 10240432-10240572 asmbl_19290 scaffold_17 - retained_intron 10240432-10240572 asmbl_19289 // Retained and Spliced Intron # retained_intron 11034956-11035084 (orient:-) max_ev_support = 1 # spliced_intron 11034956-11035084 (orient:-) max_ev_support = 3 scaffold_17 - intron 11034956-11035084 asmbl_19309,asmbl_19312,asmbl_19314 scaffold_17 - retained_intron 11034956-11035084 asmbl_19313 // Exon Skipping and Retention # skipped_exon 11035300-11036021 (orient:-) max_ev_support = 1 # retained_exon 11035476-11035526 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 11035476-11035526 asmbl_19314 scaffold_17 - intron_skips_exon 11035300-11036021 asmbl_19312 // Exon Skipping and Retention # skipped_exon 12221211-12223396 (orient:-) max_ev_support = 1 # retained_exon 12221530-12222989 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 12221530-12221665,12222813-12222989 asmbl_19367 scaffold_17 - intron_skips_exon 12221211-12223396 asmbl_19368 // Exon Skipping and Retention # skipped_exon 12368475-12371115 (orient:-) max_ev_support = 1 # retained_exon 12370509-12370560 (orient:-) max_ev_support = 1 scaffold_17 - retained_exons 12370509-12370560 asmbl_19375,asmbl_19376 scaffold_17 - intron_skips_exon 12368475-12371115 asmbl_19373,asmbl_19374 // Retained and Spliced Intron # retained_intron 13072493-13072592 (orient:-) max_ev_support = 2 # spliced_intron 13072493-13072592 (orient:-) max_ev_support = 2 scaffold_17 - intron 13072493-13072592 asmbl_19394 scaffold_17 - retained_intron 13072493-13072592 asmbl_19393 // Retained and Spliced Intron # retained_intron 13072493-13072772 (orient:-) max_ev_support = 2 # spliced_intron 13072493-13072772 (orient:-) max_ev_support = 1 scaffold_17 - intron 13072493-13072772 asmbl_19395 scaffold_17 - retained_intron 13072493-13072772 asmbl_19393 // Retained and Spliced Intron # retained_intron 13196844-13197082 (orient:-) max_ev_support = 1 # spliced_intron 13196844-13197082 (orient:-) max_ev_support = 1 scaffold_17 - intron 13196844-13197082 asmbl_19409,asmbl_19411 scaffold_17 - retained_intron 13196844-13197082 asmbl_19410 // Retained and Spliced Intron # retained_intron 13196847-13197082 (orient:-) max_ev_support = 1 # spliced_intron 13196847-13197082 (orient:-) max_ev_support = 2 scaffold_17 - intron 13196847-13197082 asmbl_19406 scaffold_17 - retained_intron 13196847-13197082 asmbl_19410 // Retained and Spliced Intron # retained_intron 13196891-13197082 (orient:-) max_ev_support = 1 # spliced_intron 13196891-13197082 (orient:-) max_ev_support = 2 scaffold_17 - intron 13196891-13197082 asmbl_19407,asmbl_19408 scaffold_17 - retained_intron 13196891-13197082 asmbl_19410 // Retained and Spliced Intron # retained_intron 13467626-13467758 (orient:-) max_ev_support = 2 # spliced_intron 13467626-13467758 (orient:-) max_ev_support = 2 scaffold_17 - intron 13467626-13467758 asmbl_19416 scaffold_17 - retained_intron 13467626-13467758 asmbl_19417 // Retained and Spliced Intron # retained_intron 13844846-13845553 (orient:-) max_ev_support = 1 # spliced_intron 13844846-13845553 (orient:-) max_ev_support = 2 scaffold_17 - intron 13844846-13845553 asmbl_19427 scaffold_17 - retained_intron 13844846-13845553 asmbl_19428,asmbl_19429 // Retained and Spliced Intron # retained_intron 13962267-13962296 (orient:-) max_ev_support = 4 # spliced_intron 13962267-13962296 (orient:-) max_ev_support = 2 scaffold_17 - intron 13962267-13962296 asmbl_19440,asmbl_19441 scaffold_17 - retained_intron 13962267-13962296 asmbl_19437,asmbl_19438,asmbl_19439 // Exon Skipping and Retention # skipped_exon 13972254-13973688 (orient:-) max_ev_support = 1 # retained_exon 13973355-13973375 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 13973355-13973375 asmbl_19443,asmbl_19444,asmbl_19446 scaffold_17 - intron_skips_exon 13972254-13973688 asmbl_19445 // Retained and Spliced Intron # retained_intron 14037114-14037195 (orient:-) max_ev_support = 1 # spliced_intron 14037114-14037195 (orient:-) max_ev_support = 1 scaffold_17 - intron 14037114-14037195 asmbl_19447 scaffold_17 - retained_intron 14037114-14037195 asmbl_19448,asmbl_19449 // Retained and Spliced Intron # retained_intron 14097321-14097576 (orient:-) max_ev_support = 1 # spliced_intron 14097321-14097576 (orient:-) max_ev_support = 2 scaffold_17 - intron 14097321-14097576 asmbl_19454,asmbl_19456 scaffold_17 - retained_intron 14097321-14097576 asmbl_19455,asmbl_19457 // Retained and Spliced Intron # retained_intron 14110311-14110420 (orient:-) max_ev_support = 1 # spliced_intron 14110311-14110420 (orient:-) max_ev_support = 2 scaffold_17 - intron 14110311-14110420 asmbl_19454,asmbl_19455 scaffold_17 - retained_intron 14110311-14110420 asmbl_19456,asmbl_19457 // Exon Skipping and Retention # skipped_exon 14325639-14325908 (orient:-) max_ev_support = 3 # retained_exon 14325767-14325815 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 14325767-14325815 asmbl_19471 scaffold_17 - intron_skips_exon 14325639-14325908 asmbl_19470 // Retained and Spliced Intron # retained_intron 14325639-14325766 (orient:-) max_ev_support = 1 # spliced_intron 14325639-14325766 (orient:-) max_ev_support = 2 scaffold_17 - intron 14325639-14325766 asmbl_19471 scaffold_17 - retained_intron 14325639-14325766 asmbl_19472 // Exon Skipping and Retention # skipped_exon 14349448-14351180 (orient:-) max_ev_support = 2 # retained_exon 14349636-14350040 (orient:-) max_ev_support = 2 scaffold_17 - retained_exons 14349636-14349704,14350011-14350040 asmbl_19474 scaffold_17 - intron_skips_exon 14349448-14351180 asmbl_19473 // Retained and Spliced Intron # retained_intron 14349448-14349635 (orient:-) max_ev_support = 1 # spliced_intron 14349448-14349635 (orient:-) max_ev_support = 2 scaffold_17 - intron 14349448-14349635 asmbl_19474,asmbl_19476 scaffold_17 - retained_intron 14349448-14349635 asmbl_19475 // Retained and Spliced Intron # retained_intron 14627703-14627832 (orient:-) max_ev_support = 1 # spliced_intron 14627703-14627832 (orient:-) max_ev_support = 1 scaffold_17 - intron 14627703-14627832 asmbl_19486,asmbl_19488 scaffold_17 - retained_intron 14627703-14627832 asmbl_19485,asmbl_19487 // Retained and Spliced Intron # retained_intron 14627370-14627619 (orient:-) max_ev_support = 1 # spliced_intron 14627370-14627619 (orient:-) max_ev_support = 1 scaffold_17 - intron 14627370-14627619 asmbl_19485,asmbl_19486,asmbl_19487 scaffold_17 - retained_intron 14627370-14627619 asmbl_19488 // Retained and Spliced Intron # retained_intron 14646820-14646843 (orient:-) max_ev_support = 1 # spliced_intron 14646820-14646843 (orient:-) max_ev_support = 1 scaffold_17 - intron 14646820-14646843 asmbl_19490,asmbl_19491 scaffold_17 - retained_intron 14646820-14646843 asmbl_19492,asmbl_19493 // Retained and Spliced Intron # retained_intron 236302-236439 (orient:-) max_ev_support = 2 # spliced_intron 236302-236439 (orient:-) max_ev_support = 2 scaffold_18 - intron 236302-236439 asmbl_19604,asmbl_19605 scaffold_18 - retained_intron 236302-236439 asmbl_19602,asmbl_19603 // Exon Skipping and Retention # skipped_exon 246105-247221 (orient:-) max_ev_support = 2 # retained_exon 246220-246574 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 246220-246574 asmbl_19608 scaffold_18 - intron_skips_exon 246105-247221 asmbl_19607 // Retained and Spliced Intron # retained_intron 370096-370294 (orient:-) max_ev_support = 1 # spliced_intron 370096-370294 (orient:-) max_ev_support = 2 scaffold_18 - intron 370096-370294 asmbl_19610,asmbl_19617,asmbl_19618 scaffold_18 - retained_intron 370096-370294 asmbl_19616 // Retained and Spliced Intron # retained_intron 377007-377116 (orient:-) max_ev_support = 1 # spliced_intron 377007-377116 (orient:-) max_ev_support = 2 scaffold_18 - intron 377007-377116 asmbl_19610,asmbl_19616 scaffold_18 - retained_intron 377007-377116 asmbl_19617 // Retained and Spliced Intron # retained_intron 372033-372122 (orient:-) max_ev_support = 1 # spliced_intron 372033-372122 (orient:-) max_ev_support = 2 scaffold_18 - intron 372033-372122 asmbl_19610,asmbl_19616,asmbl_19617 scaffold_18 - retained_intron 372033-372122 asmbl_19618 // Retained and Spliced Intron # retained_intron 835426-835527 (orient:-) max_ev_support = 1 # spliced_intron 835426-835527 (orient:-) max_ev_support = 1 scaffold_18 - intron 835426-835527 asmbl_19632,asmbl_19636,asmbl_19637 scaffold_18 - retained_intron 835426-835527 asmbl_19635 // Retained and Spliced Intron # retained_intron 839307-839434 (orient:-) max_ev_support = 1 # spliced_intron 839307-839434 (orient:-) max_ev_support = 1 scaffold_18 - intron 839307-839434 asmbl_19635,asmbl_19636 scaffold_18 - retained_intron 839307-839434 asmbl_19637 // Retained and Spliced Intron # retained_intron 852034-852150 (orient:-) max_ev_support = 1 # spliced_intron 852034-852150 (orient:-) max_ev_support = 2 scaffold_18 - intron 852034-852150 asmbl_19638,asmbl_19640 scaffold_18 - retained_intron 852034-852150 asmbl_19639 // Retained and Spliced Intron # retained_intron 1382455-1382684 (orient:-) max_ev_support = 2 # spliced_intron 1382455-1382684 (orient:-) max_ev_support = 2 scaffold_18 - intron 1382455-1382684 asmbl_19647 scaffold_18 - retained_intron 1382455-1382684 asmbl_19648 // Retained and Spliced Intron # retained_intron 1382022-1382102 (orient:-) max_ev_support = 1 # spliced_intron 1382022-1382102 (orient:-) max_ev_support = 2 scaffold_18 - intron 1382022-1382102 asmbl_19647,asmbl_19648 scaffold_18 - retained_intron 1382022-1382102 asmbl_19649 // Retained and Spliced Intron # retained_intron 1624835-1624863 (orient:-) max_ev_support = 1 # spliced_intron 1624835-1624863 (orient:-) max_ev_support = 1 scaffold_18 - intron 1624835-1624863 asmbl_19664 scaffold_18 - retained_intron 1624835-1624863 asmbl_19665 // Exon Skipping and Retention # skipped_exon 1753434-1754444 (orient:-) max_ev_support = 1 # retained_exon 1754139-1754256 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 1754139-1754256 asmbl_19677,asmbl_19679 scaffold_18 - intron_skips_exon 1753434-1754444 asmbl_19678 // Retained and Spliced Intron # retained_intron 1862478-1862581 (orient:-) max_ev_support = 3 # spliced_intron 1862478-1862581 (orient:-) max_ev_support = 2 scaffold_18 - intron 1862478-1862581 asmbl_19684,asmbl_19685,asmbl_19686 scaffold_18 - retained_intron 1862478-1862581 asmbl_19683 // Retained and Spliced Intron # retained_intron 1862675-1862768 (orient:-) max_ev_support = 1 # spliced_intron 1862675-1862768 (orient:-) max_ev_support = 2 scaffold_18 - intron 1862675-1862768 asmbl_19683,asmbl_19684 scaffold_18 - retained_intron 1862675-1862768 asmbl_19685,asmbl_19686 // Retained and Spliced Intron # retained_intron 1886374-1887352 (orient:-) max_ev_support = 1 # spliced_intron 1886374-1887352 (orient:-) max_ev_support = 1 scaffold_18 - intron 1886374-1887352 asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703 scaffold_18 - retained_intron 1886374-1887352 asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693 // Retained and Spliced Intron # retained_intron 1886374-1887983 (orient:-) max_ev_support = 3 # spliced_intron 1886374-1887983 (orient:-) max_ev_support = 1 scaffold_18 - intron 1886374-1887983 asmbl_19689,asmbl_19697,asmbl_19699,asmbl_19701,asmbl_19702 scaffold_18 - retained_intron 1886374-1887983 asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693 // Retained and Spliced Intron # retained_intron 1887392-1887983 (orient:-) max_ev_support = 3 # spliced_intron 1887392-1887983 (orient:-) max_ev_support = 1 scaffold_18 - intron 1887392-1887983 asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703 scaffold_18 - retained_intron 1887392-1887983 asmbl_19688,asmbl_19691,asmbl_19692,asmbl_19693 // Retained and Spliced Intron # retained_intron 1893653-1894712 (orient:-) max_ev_support = 3 # spliced_intron 1893653-1894712 (orient:-) max_ev_support = 2 scaffold_18 - intron 1893653-1894712 asmbl_19690,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706 scaffold_18 - retained_intron 1893653-1894712 asmbl_19688,asmbl_19689,asmbl_19691,asmbl_19692,asmbl_19693,asmbl_19694 // Retained and Spliced Intron # retained_intron 1895347-1896928 (orient:-) max_ev_support = 2 # spliced_intron 1895347-1896928 (orient:-) max_ev_support = 1 scaffold_18 - intron 1895347-1896928 asmbl_19690,asmbl_19704,asmbl_19705,asmbl_19706 scaffold_18 - retained_intron 1895347-1896928 asmbl_19688,asmbl_19689,asmbl_19691,asmbl_19692,asmbl_19693,asmbl_19694,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19701,asmbl_19703 // Retained and Spliced Intron # retained_intron 1904443-1905350 (orient:-) max_ev_support = 3 # spliced_intron 1904443-1905350 (orient:-) max_ev_support = 2 scaffold_18 - intron 1904443-1905350 asmbl_19690,asmbl_19692,asmbl_19695,asmbl_19696,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19703,asmbl_19704,asmbl_19706 scaffold_18 - retained_intron 1904443-1905350 asmbl_19688,asmbl_19689,asmbl_19694 // Retained and Spliced Intron # retained_intron 1895347-1897477 (orient:-) max_ev_support = 1 # spliced_intron 1895347-1897477 (orient:-) max_ev_support = 1 scaffold_18 - intron 1895347-1897477 asmbl_19699,asmbl_19702 scaffold_18 - retained_intron 1895347-1897477 asmbl_19689,asmbl_19693,asmbl_19701 // Retained and Spliced Intron # retained_intron 1896938-1897477 (orient:-) max_ev_support = 1 # spliced_intron 1896938-1897477 (orient:-) max_ev_support = 1 scaffold_18 - intron 1896938-1897477 asmbl_19688,asmbl_19690,asmbl_19691,asmbl_19692,asmbl_19694,asmbl_19696,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706 scaffold_18 - retained_intron 1896938-1897477 asmbl_19689,asmbl_19693,asmbl_19701 // Retained and Spliced Intron # retained_intron 1901421-1904370 (orient:-) max_ev_support = 5 # spliced_intron 1901421-1904370 (orient:-) max_ev_support = 1 scaffold_18 - intron 1901421-1904370 asmbl_19688,asmbl_19694,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19706 scaffold_18 - retained_intron 1901421-1904370 asmbl_19689,asmbl_19690,asmbl_19695,asmbl_19696 // Retained and Spliced Intron # retained_intron 1903420-1904370 (orient:-) max_ev_support = 4 # spliced_intron 1903420-1904370 (orient:-) max_ev_support = 1 scaffold_18 - intron 1903420-1904370 asmbl_19692,asmbl_19703,asmbl_19704 scaffold_18 - retained_intron 1903420-1904370 asmbl_19689,asmbl_19690,asmbl_19695,asmbl_19696 // Exon Skipping and Retention # skipped_exon 1893284-1894703 (orient:-) max_ev_support = 1 # retained_exon 1893644-1893652 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 1893644-1893652 asmbl_19690,asmbl_19696,asmbl_19697,asmbl_19698,asmbl_19703,asmbl_19704,asmbl_19705,asmbl_19706 scaffold_18 - intron_skips_exon 1893284-1894703 asmbl_19699,asmbl_19701,asmbl_19702 // Exon Skipping and Retention # skipped_exon 1895347-1897477 (orient:-) max_ev_support = 1 # retained_exon 1896929-1896937 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 1896929-1896937 asmbl_19690,asmbl_19704,asmbl_19705,asmbl_19706 scaffold_18 - intron_skips_exon 1895347-1897477 asmbl_19699,asmbl_19702 // Retained and Spliced Intron # retained_intron 1899014-1899224 (orient:-) max_ev_support = 1 # spliced_intron 1899014-1899224 (orient:-) max_ev_support = 1 scaffold_18 - intron 1899014-1899224 asmbl_19693 scaffold_18 - retained_intron 1899014-1899224 asmbl_19690,asmbl_19691,asmbl_19695,asmbl_19696,asmbl_19701,asmbl_19702,asmbl_19705 // Retained and Spliced Intron # retained_intron 1899014-1899766 (orient:-) max_ev_support = 1 # spliced_intron 1899014-1899766 (orient:-) max_ev_support = 1 scaffold_18 - intron 1899014-1899766 asmbl_19688,asmbl_19689,asmbl_19692,asmbl_19694,asmbl_19699,asmbl_19700,asmbl_19703,asmbl_19704,asmbl_19706 scaffold_18 - retained_intron 1899014-1899766 asmbl_19690,asmbl_19691,asmbl_19695,asmbl_19696,asmbl_19701,asmbl_19702,asmbl_19705 // Retained and Spliced Intron # retained_intron 1899809-1900625 (orient:-) max_ev_support = 1 # spliced_intron 1899809-1900625 (orient:-) max_ev_support = 1 scaffold_18 - intron 1899809-1900625 asmbl_19688,asmbl_19689,asmbl_19690,asmbl_19692,asmbl_19694,asmbl_19695,asmbl_19696,asmbl_19699,asmbl_19700,asmbl_19701,asmbl_19703,asmbl_19704,asmbl_19706 scaffold_18 - retained_intron 1899809-1900625 asmbl_19691,asmbl_19693,asmbl_19702,asmbl_19705 // Exon Skipping and Retention # skipped_exon 1886374-1887983 (orient:-) max_ev_support = 1 # retained_exon 1887353-1887391 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 1887353-1887391 asmbl_19694,asmbl_19696,asmbl_19698,asmbl_19703 scaffold_18 - intron_skips_exon 1886374-1887983 asmbl_19689,asmbl_19697,asmbl_19699,asmbl_19701,asmbl_19702 // Retained and Spliced Intron # retained_intron 1944645-1944740 (orient:-) max_ev_support = 2 # spliced_intron 1944645-1944740 (orient:-) max_ev_support = 2 scaffold_18 - intron 1944645-1944740 asmbl_19713 scaffold_18 - retained_intron 1944645-1944740 asmbl_19712 // Retained and Spliced Intron # retained_intron 2050891-2050940 (orient:-) max_ev_support = 2 # spliced_intron 2050891-2050940 (orient:-) max_ev_support = 1 scaffold_18 - intron 2050891-2050940 asmbl_19730 scaffold_18 - retained_intron 2050891-2050940 asmbl_19729 // Retained and Spliced Intron # retained_intron 2050891-2050959 (orient:-) max_ev_support = 2 # spliced_intron 2050891-2050959 (orient:-) max_ev_support = 1 scaffold_18 - intron 2050891-2050959 asmbl_19731 scaffold_18 - retained_intron 2050891-2050959 asmbl_19729 // Exon Skipping and Retention # skipped_exon 2055960-2058306 (orient:-) max_ev_support = 2 # retained_exon 2056676-2056747 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 2056676-2056747 asmbl_19735 scaffold_18 - intron_skips_exon 2055960-2058306 asmbl_19736 // Exon Skipping and Retention # skipped_exon 2087237-2087931 (orient:-) max_ev_support = 1 # retained_exon 2087503-2087627 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 2087503-2087627 asmbl_19742 scaffold_18 - intron_skips_exon 2087237-2087931 asmbl_19743 // Retained and Spliced Intron # retained_intron 2148780-2149152 (orient:-) max_ev_support = 3 # spliced_intron 2148780-2149152 (orient:-) max_ev_support = 2 scaffold_18 - intron 2148780-2149152 asmbl_19747 scaffold_18 - retained_intron 2148780-2149152 asmbl_19746 // Retained and Spliced Intron # retained_intron 2394186-2394398 (orient:-) max_ev_support = 4 # spliced_intron 2394186-2394398 (orient:-) max_ev_support = 3 scaffold_18 - intron 2394186-2394398 asmbl_19761 scaffold_18 - retained_intron 2394186-2394398 asmbl_19760 // Retained and Spliced Intron # retained_intron 2394215-2394398 (orient:-) max_ev_support = 4 # spliced_intron 2394215-2394398 (orient:-) max_ev_support = 2 scaffold_18 - intron 2394215-2394398 asmbl_19762 scaffold_18 - retained_intron 2394215-2394398 asmbl_19760 // Retained and Spliced Intron # retained_intron 2565486-2565566 (orient:-) max_ev_support = 1 # spliced_intron 2565486-2565566 (orient:-) max_ev_support = 2 scaffold_18 - intron 2565486-2565566 asmbl_19765 scaffold_18 - retained_intron 2565486-2565566 asmbl_19766 // Retained and Spliced Intron # retained_intron 2758917-2759003 (orient:-) max_ev_support = 2 # spliced_intron 2758917-2759003 (orient:-) max_ev_support = 2 scaffold_18 - intron 2758917-2759003 asmbl_19774,asmbl_19775 scaffold_18 - retained_intron 2758917-2759003 asmbl_19773,asmbl_19776 // Retained and Spliced Intron # retained_intron 2759098-2759324 (orient:-) max_ev_support = 2 # spliced_intron 2759098-2759324 (orient:-) max_ev_support = 2 scaffold_18 - intron 2759098-2759324 asmbl_19774,asmbl_19776 scaffold_18 - retained_intron 2759098-2759324 asmbl_19773,asmbl_19775 // Retained and Spliced Intron # retained_intron 2779711-2779799 (orient:-) max_ev_support = 2 # spliced_intron 2779711-2779799 (orient:-) max_ev_support = 2 scaffold_18 - intron 2779711-2779799 asmbl_19777 scaffold_18 - retained_intron 2779711-2779799 asmbl_19778 // Retained and Spliced Intron # retained_intron 3096365-3096617 (orient:-) max_ev_support = 1 # spliced_intron 3096365-3096617 (orient:-) max_ev_support = 1 scaffold_18 - intron 3096365-3096617 asmbl_19782,asmbl_19783 scaffold_18 - retained_intron 3096365-3096617 asmbl_19781 // Retained and Spliced Intron # retained_intron 3105935-3106050 (orient:-) max_ev_support = 3 # spliced_intron 3105935-3106050 (orient:-) max_ev_support = 1 scaffold_18 - intron 3105935-3106050 asmbl_19785 scaffold_18 - retained_intron 3105935-3106050 asmbl_19784 // Retained and Spliced Intron # retained_intron 3789471-3789712 (orient:-) max_ev_support = 2 # spliced_intron 3789471-3789712 (orient:-) max_ev_support = 1 scaffold_18 - intron 3789471-3789712 asmbl_19810,asmbl_19812,asmbl_19816 scaffold_18 - retained_intron 3789471-3789712 asmbl_19809,asmbl_19811,asmbl_19813,asmbl_19814,asmbl_19815 // Exon Skipping and Retention # skipped_exon 3915974-3917888 (orient:-) max_ev_support = 1 # retained_exon 3917647-3917798 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798 asmbl_19819 scaffold_18 - intron_skips_exon 3915974-3917888 asmbl_19824 // Exon Skipping and Retention # skipped_exon 3916195-3918126 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918019 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019 asmbl_19819 scaffold_18 - intron_skips_exon 3916195-3918126 asmbl_19823 // Exon Skipping and Retention # skipped_exon 3916387-3918363 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918211 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019,3918127-3918211 asmbl_19819 scaffold_18 - intron_skips_exon 3916387-3918363 asmbl_19821 // Exon Skipping and Retention # skipped_exon 3916636-3918640 (orient:-) max_ev_support = 1 # retained_exon 3917647-3918460 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3917647-3917798,3917889-3918019,3918127-3918211,3918364-3918460 asmbl_19819 scaffold_18 - intron_skips_exon 3916636-3918640 asmbl_19822 // Exon Skipping and Retention # skipped_exon 3915622-3917646 (orient:-) max_ev_support = 1 # retained_exon 3915822-3916386 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 3915822-3915973,3916064-3916194,3916302-3916386 asmbl_19821 scaffold_18 - intron_skips_exon 3915622-3917646 asmbl_19819 // Retained and Spliced Intron # retained_intron 4071656-4072114 (orient:-) max_ev_support = 2 # spliced_intron 4071656-4072114 (orient:-) max_ev_support = 1 scaffold_18 - intron 4071656-4072114 asmbl_19827 scaffold_18 - retained_intron 4071656-4072114 asmbl_19825,asmbl_19826 // Retained and Spliced Intron # retained_intron 4605161-4605249 (orient:-) max_ev_support = 1 # spliced_intron 4605161-4605249 (orient:-) max_ev_support = 2 scaffold_18 - intron 4605161-4605249 asmbl_19849 scaffold_18 - retained_intron 4605161-4605249 asmbl_19850 // Retained and Spliced Intron # retained_intron 4724166-4724270 (orient:-) max_ev_support = 2 # spliced_intron 4724166-4724270 (orient:-) max_ev_support = 2 scaffold_18 - intron 4724166-4724270 asmbl_19860 scaffold_18 - retained_intron 4724166-4724270 asmbl_19859 // Retained and Spliced Intron # retained_intron 5563424-5563617 (orient:-) max_ev_support = 2 # spliced_intron 5563424-5563617 (orient:-) max_ev_support = 3 scaffold_18 - intron 5563424-5563617 asmbl_19890,asmbl_19892 scaffold_18 - retained_intron 5563424-5563617 asmbl_19891,asmbl_19893 // Retained and Spliced Intron # retained_intron 5584921-5585267 (orient:-) max_ev_support = 3 # spliced_intron 5584921-5585267 (orient:-) max_ev_support = 2 scaffold_18 - intron 5584921-5585267 asmbl_19902,asmbl_19903 scaffold_18 - retained_intron 5584921-5585267 asmbl_19901,asmbl_19904 // Retained and Spliced Intron # retained_intron 6757958-6758114 (orient:-) max_ev_support = 3 # spliced_intron 6757958-6758114 (orient:-) max_ev_support = 2 scaffold_18 - intron 6757958-6758114 asmbl_19948 scaffold_18 - retained_intron 6757958-6758114 asmbl_19947 // Exon Skipping and Retention # skipped_exon 7172231-7172664 (orient:-) max_ev_support = 3 # retained_exon 7172462-7172566 (orient:-) max_ev_support = 3 scaffold_18 - retained_exons 7172462-7172566 asmbl_19961,asmbl_19964 scaffold_18 - intron_skips_exon 7172231-7172664 asmbl_19962 // Retained and Spliced Intron # retained_intron 7481614-7482977 (orient:-) max_ev_support = 3 # spliced_intron 7481614-7482977 (orient:-) max_ev_support = 1 scaffold_18 - intron 7481614-7482977 asmbl_19973 scaffold_18 - retained_intron 7481614-7482977 asmbl_19972 // Retained and Spliced Intron # retained_intron 7509091-7509220 (orient:-) max_ev_support = 2 # spliced_intron 7509091-7509220 (orient:-) max_ev_support = 3 scaffold_18 - intron 7509091-7509220 asmbl_19982,asmbl_19983 scaffold_18 - retained_intron 7509091-7509220 asmbl_19984 // Retained and Spliced Intron # retained_intron 7629659-7631646 (orient:-) max_ev_support = 2 # spliced_intron 7629659-7631646 (orient:-) max_ev_support = 2 scaffold_18 - intron 7629659-7631646 asmbl_20000,asmbl_20002 scaffold_18 - retained_intron 7629659-7631646 asmbl_19996,asmbl_19999 // Retained and Spliced Intron # retained_intron 7629659-7631669 (orient:-) max_ev_support = 2 # spliced_intron 7629659-7631669 (orient:-) max_ev_support = 2 scaffold_18 - intron 7629659-7631669 asmbl_20001 scaffold_18 - retained_intron 7629659-7631669 asmbl_19996,asmbl_19999 // Retained and Spliced Intron # retained_intron 7631535-7631646 (orient:-) max_ev_support = 2 # spliced_intron 7631535-7631646 (orient:-) max_ev_support = 1 scaffold_18 - intron 7631535-7631646 asmbl_20003 scaffold_18 - retained_intron 7631535-7631646 asmbl_19996,asmbl_19999 // Retained and Spliced Intron # retained_intron 7631535-7631669 (orient:-) max_ev_support = 2 # spliced_intron 7631535-7631669 (orient:-) max_ev_support = 3 scaffold_18 - intron 7631535-7631669 asmbl_19994,asmbl_19995 scaffold_18 - retained_intron 7631535-7631669 asmbl_19996,asmbl_19999 // Retained and Spliced Intron # retained_intron 7864869-7866089 (orient:-) max_ev_support = 1 # spliced_intron 7864869-7866089 (orient:-) max_ev_support = 1 scaffold_18 - intron 7864869-7866089 asmbl_20020 scaffold_18 - retained_intron 7864869-7866089 asmbl_20019 // Retained and Spliced Intron # retained_intron 7943320-7944087 (orient:-) max_ev_support = 3 # spliced_intron 7943320-7944087 (orient:-) max_ev_support = 1 scaffold_18 - intron 7943320-7944087 asmbl_20025 scaffold_18 - retained_intron 7943320-7944087 asmbl_20023 // Retained and Spliced Intron # retained_intron 7943323-7944083 (orient:-) max_ev_support = 3 # spliced_intron 7943323-7944083 (orient:-) max_ev_support = 2 scaffold_18 - intron 7943323-7944083 asmbl_20024 scaffold_18 - retained_intron 7943323-7944083 asmbl_20023 // Retained and Spliced Intron # retained_intron 8372775-8373987 (orient:-) max_ev_support = 2 # spliced_intron 8372775-8373987 (orient:-) max_ev_support = 1 scaffold_18 - intron 8372775-8373987 asmbl_20036,asmbl_20037 scaffold_18 - retained_intron 8372775-8373987 asmbl_20035 // Retained and Spliced Intron # retained_intron 8425824-8425992 (orient:-) max_ev_support = 3 # spliced_intron 8425824-8425992 (orient:-) max_ev_support = 3 scaffold_18 - intron 8425824-8425992 asmbl_20045 scaffold_18 - retained_intron 8425824-8425992 asmbl_20044 // Retained and Spliced Intron # retained_intron 8436469-8436543 (orient:-) max_ev_support = 2 # spliced_intron 8436469-8436543 (orient:-) max_ev_support = 3 scaffold_18 - intron 8436469-8436543 asmbl_20046 scaffold_18 - retained_intron 8436469-8436543 asmbl_20047,asmbl_20048 // Retained and Spliced Intron # retained_intron 8862547-8863588 (orient:-) max_ev_support = 2 # spliced_intron 8862547-8863588 (orient:-) max_ev_support = 2 scaffold_18 - intron 8862547-8863588 asmbl_20061,asmbl_20065 scaffold_18 - retained_intron 8862547-8863588 asmbl_20060,asmbl_20062,asmbl_20063,asmbl_20066,asmbl_20067 // Retained and Spliced Intron # retained_intron 8865903-8866098 (orient:-) max_ev_support = 3 # spliced_intron 8865903-8866098 (orient:-) max_ev_support = 2 scaffold_18 - intron 8865903-8866098 asmbl_20062,asmbl_20065,asmbl_20068 scaffold_18 - retained_intron 8865903-8866098 asmbl_20060 // Exon Skipping and Retention # skipped_exon 8862547-8864199 (orient:-) max_ev_support = 2 # retained_exon 8863589-8863626 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 8863589-8863626 asmbl_20061,asmbl_20065 scaffold_18 - intron_skips_exon 8862547-8864199 asmbl_20064 // Exon Skipping and Retention # skipped_exon 8865903-8866225 (orient:-) max_ev_support = 2 # retained_exon 8866099-8866113 (orient:-) max_ev_support = 2 scaffold_18 - retained_exons 8866099-8866113 asmbl_20062,asmbl_20065,asmbl_20068 scaffold_18 - intron_skips_exon 8865903-8866225 asmbl_20061,asmbl_20066,asmbl_20067 // Retained and Spliced Intron # retained_intron 8862547-8864199 (orient:-) max_ev_support = 2 # spliced_intron 8862547-8864199 (orient:-) max_ev_support = 2 scaffold_18 - intron 8862547-8864199 asmbl_20064 scaffold_18 - retained_intron 8862547-8864199 asmbl_20063 // Retained and Spliced Intron # retained_intron 8863627-8864527 (orient:-) max_ev_support = 2 # spliced_intron 8863627-8864527 (orient:-) max_ev_support = 2 scaffold_18 - intron 8863627-8864527 asmbl_20060,asmbl_20061,asmbl_20062,asmbl_20065,asmbl_20066,asmbl_20067,asmbl_20068 scaffold_18 - retained_intron 8863627-8864527 asmbl_20063 // Retained and Spliced Intron # retained_intron 8865798-8865880 (orient:-) max_ev_support = 1 # spliced_intron 8865798-8865880 (orient:-) max_ev_support = 2 scaffold_18 - intron 8865798-8865880 asmbl_20060,asmbl_20061,asmbl_20062,asmbl_20065,asmbl_20066 scaffold_18 - retained_intron 8865798-8865880 asmbl_20067,asmbl_20068 // Retained and Spliced Intron # retained_intron 8883548-8883630 (orient:-) max_ev_support = 3 # spliced_intron 8883548-8883630 (orient:-) max_ev_support = 3 scaffold_18 - intron 8883548-8883630 asmbl_20070 scaffold_18 - retained_intron 8883548-8883630 asmbl_20069 // Exon Skipping and Retention # skipped_exon 8875038-8876200 (orient:-) max_ev_support = 2 # retained_exon 8875853-8875900 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 8875853-8875900 asmbl_20073,asmbl_20074 scaffold_18 - intron_skips_exon 8875038-8876200 asmbl_20071 // Retained and Spliced Intron # retained_intron 8912338-8912443 (orient:-) max_ev_support = 3 # spliced_intron 8912338-8912443 (orient:-) max_ev_support = 1 scaffold_18 - intron 8912338-8912443 asmbl_20078,asmbl_20079,asmbl_20080,asmbl_20081,asmbl_20084,asmbl_20085 scaffold_18 - retained_intron 8912338-8912443 asmbl_20076 // Retained and Spliced Intron # retained_intron 8912486-8913423 (orient:-) max_ev_support = 1 # spliced_intron 8912486-8913423 (orient:-) max_ev_support = 1 scaffold_18 - intron 8912486-8913423 asmbl_20080,asmbl_20085 scaffold_18 - retained_intron 8912486-8913423 asmbl_20076,asmbl_20078,asmbl_20079,asmbl_20084 // Retained and Spliced Intron # retained_intron 8912486-8913581 (orient:-) max_ev_support = 1 # spliced_intron 8912486-8913581 (orient:-) max_ev_support = 1 scaffold_18 - intron 8912486-8913581 asmbl_20081 scaffold_18 - retained_intron 8912486-8913581 asmbl_20076,asmbl_20079,asmbl_20084 // Retained and Spliced Intron # retained_intron 8913428-8913585 (orient:-) max_ev_support = 1 # spliced_intron 8913428-8913585 (orient:-) max_ev_support = 1 scaffold_18 - intron 8913428-8913585 asmbl_20078 scaffold_18 - retained_intron 8913428-8913585 asmbl_20076,asmbl_20079,asmbl_20080,asmbl_20084,asmbl_20085 // Retained and Spliced Intron # retained_intron 8911050-8911533 (orient:-) max_ev_support = 1 # spliced_intron 8911050-8911533 (orient:-) max_ev_support = 1 scaffold_18 - intron 8911050-8911533 asmbl_20076,asmbl_20078,asmbl_20079,asmbl_20080,asmbl_20081,asmbl_20083,asmbl_20084,asmbl_20085 scaffold_18 - retained_intron 8911050-8911533 asmbl_20082 // Retained and Spliced Intron # retained_intron 9258671-9259387 (orient:-) max_ev_support = 3 # spliced_intron 9258671-9259387 (orient:-) max_ev_support = 3 scaffold_18 - intron 9258671-9259387 asmbl_20093 scaffold_18 - retained_intron 9258671-9259387 asmbl_20092,asmbl_20095 // Retained and Spliced Intron # retained_intron 9258671-9259564 (orient:-) max_ev_support = 3 # spliced_intron 9258671-9259564 (orient:-) max_ev_support = 1 scaffold_18 - intron 9258671-9259564 asmbl_20094 scaffold_18 - retained_intron 9258671-9259564 asmbl_20092 // Retained and Spliced Intron # retained_intron 9259474-9259564 (orient:-) max_ev_support = 3 # spliced_intron 9259474-9259564 (orient:-) max_ev_support = 3 scaffold_18 - intron 9259474-9259564 asmbl_20093,asmbl_20095 scaffold_18 - retained_intron 9259474-9259564 asmbl_20092,asmbl_20096 // Exon Skipping and Retention # skipped_exon 9258671-9259564 (orient:-) max_ev_support = 1 # retained_exon 9259388-9259473 (orient:-) max_ev_support = 3 scaffold_18 - retained_exons 9259388-9259473 asmbl_20093 scaffold_18 - intron_skips_exon 9258671-9259564 asmbl_20094 // Retained and Spliced Intron # retained_intron 9259618-9260058 (orient:-) max_ev_support = 2 # spliced_intron 9259618-9260058 (orient:-) max_ev_support = 3 scaffold_18 - intron 9259618-9260058 asmbl_20092,asmbl_20093,asmbl_20094,asmbl_20095 scaffold_18 - retained_intron 9259618-9260058 asmbl_20096 // Retained and Spliced Intron # retained_intron 9628583-9628642 (orient:-) max_ev_support = 1 # spliced_intron 9628583-9628642 (orient:-) max_ev_support = 1 scaffold_18 - intron 9628583-9628642 asmbl_20100,asmbl_20101 scaffold_18 - retained_intron 9628583-9628642 asmbl_20097,asmbl_20099 // Retained and Spliced Intron # retained_intron 9787536-9787656 (orient:-) max_ev_support = 2 # spliced_intron 9787536-9787656 (orient:-) max_ev_support = 2 scaffold_18 - intron 9787536-9787656 asmbl_20117,asmbl_20118 scaffold_18 - retained_intron 9787536-9787656 asmbl_20116 // Retained and Spliced Intron # retained_intron 9787711-9788236 (orient:-) max_ev_support = 2 # spliced_intron 9787711-9788236 (orient:-) max_ev_support = 1 scaffold_18 - intron 9787711-9788236 asmbl_20118 scaffold_18 - retained_intron 9787711-9788236 asmbl_20116 // Retained and Spliced Intron # retained_intron 9787942-9788236 (orient:-) max_ev_support = 2 # spliced_intron 9787942-9788236 (orient:-) max_ev_support = 2 scaffold_18 - intron 9787942-9788236 asmbl_20117 scaffold_18 - retained_intron 9787942-9788236 asmbl_20116 // Retained and Spliced Intron # retained_intron 9804343-9804380 (orient:-) max_ev_support = 2 # spliced_intron 9804343-9804380 (orient:-) max_ev_support = 1 scaffold_18 - intron 9804343-9804380 asmbl_20123 scaffold_18 - retained_intron 9804343-9804380 asmbl_20122,asmbl_20124 // Retained and Spliced Intron # retained_intron 9804399-9804418 (orient:-) max_ev_support = 2 # spliced_intron 9804399-9804418 (orient:-) max_ev_support = 1 scaffold_18 - intron 9804399-9804418 asmbl_20124 scaffold_18 - retained_intron 9804399-9804418 asmbl_20122,asmbl_20123 // Exon Skipping and Retention # skipped_exon 10004393-10007012 (orient:-) max_ev_support = 1 # retained_exon 10005843-10005935 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 10005843-10005935 asmbl_20129 scaffold_18 - intron_skips_exon 10004393-10007012 asmbl_20128 // Retained and Spliced Intron # retained_intron 11296913-11297076 (orient:-) max_ev_support = 2 # spliced_intron 11296913-11297076 (orient:-) max_ev_support = 2 scaffold_18 - intron 11296913-11297076 asmbl_20158,asmbl_20159 scaffold_18 - retained_intron 11296913-11297076 asmbl_20157 // Retained and Spliced Intron # retained_intron 11297253-11297345 (orient:-) max_ev_support = 2 # spliced_intron 11297253-11297345 (orient:-) max_ev_support = 2 scaffold_18 - intron 11297253-11297345 asmbl_20158 scaffold_18 - retained_intron 11297253-11297345 asmbl_20157,asmbl_20159 // Retained and Spliced Intron # retained_intron 12603092-12603275 (orient:-) max_ev_support = 2 # spliced_intron 12603092-12603275 (orient:-) max_ev_support = 2 scaffold_18 - intron 12603092-12603275 asmbl_20183 scaffold_18 - retained_intron 12603092-12603275 asmbl_20184 // Exon Skipping and Retention # skipped_exon 12609003-12609670 (orient:-) max_ev_support = 2 # retained_exon 12609437-12609570 (orient:-) max_ev_support = 1 scaffold_18 - retained_exons 12609437-12609570 asmbl_20186 scaffold_18 - intron_skips_exon 12609003-12609670 asmbl_20185 // Retained and Spliced Intron # retained_intron 13150111-13150230 (orient:-) max_ev_support = 1 # spliced_intron 13150111-13150230 (orient:-) max_ev_support = 1 scaffold_18 - intron 13150111-13150230 asmbl_20195 scaffold_18 - retained_intron 13150111-13150230 asmbl_20194 // Retained and Spliced Intron # retained_intron 13150203-13150282 (orient:-) max_ev_support = 1 # spliced_intron 13150203-13150282 (orient:-) max_ev_support = 1 scaffold_18 - intron 13150203-13150282 asmbl_20193 scaffold_18 - retained_intron 13150203-13150282 asmbl_20194 // Retained and Spliced Intron # retained_intron 13634278-13634349 (orient:-) max_ev_support = 1 # spliced_intron 13634278-13634349 (orient:-) max_ev_support = 2 scaffold_18 - intron 13634278-13634349 asmbl_20204 scaffold_18 - retained_intron 13634278-13634349 asmbl_20205 // Exon Skipping and Retention # skipped_exon 204474-205653 (orient:+) max_ev_support = 2 # retained_exon 205250-205340 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 205250-205340 asmbl_20299,asmbl_20302,asmbl_20304 scaffold_18 + intron_skips_exon 204474-205653 asmbl_20300,asmbl_20303 // Retained and Spliced Intron # retained_intron 206330-206510 (orient:+) max_ev_support = 2 # spliced_intron 206330-206510 (orient:+) max_ev_support = 3 scaffold_18 + intron 206330-206510 asmbl_20299 scaffold_18 + retained_intron 206330-206510 asmbl_20301 // Retained and Spliced Intron # retained_intron 206330-206526 (orient:+) max_ev_support = 2 # spliced_intron 206330-206526 (orient:+) max_ev_support = 2 scaffold_18 + intron 206330-206526 asmbl_20300,asmbl_20302,asmbl_20303,asmbl_20304,asmbl_20305 scaffold_18 + retained_intron 206330-206526 asmbl_20301 // Retained and Spliced Intron # retained_intron 281385-282108 (orient:+) max_ev_support = 3 # spliced_intron 281385-282108 (orient:+) max_ev_support = 2 scaffold_18 + intron 281385-282108 asmbl_20314 scaffold_18 + retained_intron 281385-282108 asmbl_20311 // Retained and Spliced Intron # retained_intron 281385-282126 (orient:+) max_ev_support = 3 # spliced_intron 281385-282126 (orient:+) max_ev_support = 2 scaffold_18 + intron 281385-282126 asmbl_20313 scaffold_18 + retained_intron 281385-282126 asmbl_20311 // Retained and Spliced Intron # retained_intron 282012-282108 (orient:+) max_ev_support = 1 # spliced_intron 282012-282108 (orient:+) max_ev_support = 1 scaffold_18 + intron 282012-282108 asmbl_20312 scaffold_18 + retained_intron 282012-282108 asmbl_20311 // Retained and Spliced Intron # retained_intron 632566-632655 (orient:+) max_ev_support = 2 # spliced_intron 632566-632655 (orient:+) max_ev_support = 1 scaffold_18 + intron 632566-632655 asmbl_20338 scaffold_18 + retained_intron 632566-632655 asmbl_20335 // Retained and Spliced Intron # retained_intron 632566-632852 (orient:+) max_ev_support = 2 # spliced_intron 632566-632852 (orient:+) max_ev_support = 2 scaffold_18 + intron 632566-632852 asmbl_20336 scaffold_18 + retained_intron 632566-632852 asmbl_20335 // Retained and Spliced Intron # retained_intron 633666-633744 (orient:+) max_ev_support = 2 # spliced_intron 633666-633744 (orient:+) max_ev_support = 2 scaffold_18 + intron 633666-633744 asmbl_20335,asmbl_20336,asmbl_20338 scaffold_18 + retained_intron 633666-633744 asmbl_20337 // Retained and Spliced Intron # retained_intron 823947-824156 (orient:+) max_ev_support = 2 # spliced_intron 823947-824156 (orient:+) max_ev_support = 2 scaffold_18 + intron 823947-824156 asmbl_20352,asmbl_20354 scaffold_18 + retained_intron 823947-824156 asmbl_20351,asmbl_20353 // Retained and Spliced Intron # retained_intron 824174-824499 (orient:+) max_ev_support = 2 # spliced_intron 824174-824499 (orient:+) max_ev_support = 1 scaffold_18 + intron 824174-824499 asmbl_20354 scaffold_18 + retained_intron 824174-824499 asmbl_20351,asmbl_20353 // Retained and Spliced Intron # retained_intron 824174-824807 (orient:+) max_ev_support = 2 # spliced_intron 824174-824807 (orient:+) max_ev_support = 2 scaffold_18 + intron 824174-824807 asmbl_20352 scaffold_18 + retained_intron 824174-824807 asmbl_20351,asmbl_20353 // Retained and Spliced Intron # retained_intron 824551-824807 (orient:+) max_ev_support = 2 # spliced_intron 824551-824807 (orient:+) max_ev_support = 1 scaffold_18 + intron 824551-824807 asmbl_20354 scaffold_18 + retained_intron 824551-824807 asmbl_20351,asmbl_20353 // Retained and Spliced Intron # retained_intron 823178-823278 (orient:+) max_ev_support = 2 # spliced_intron 823178-823278 (orient:+) max_ev_support = 2 scaffold_18 + intron 823178-823278 asmbl_20351,asmbl_20352,asmbl_20354,asmbl_20355 scaffold_18 + retained_intron 823178-823278 asmbl_20353 // Exon Skipping and Retention # skipped_exon 824174-824807 (orient:+) max_ev_support = 2 # retained_exon 824500-824550 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 824500-824550 asmbl_20354 scaffold_18 + intron_skips_exon 824174-824807 asmbl_20352 // Retained and Spliced Intron # retained_intron 822928-823047 (orient:+) max_ev_support = 1 # spliced_intron 822928-823047 (orient:+) max_ev_support = 2 scaffold_18 + intron 822928-823047 asmbl_20351,asmbl_20352,asmbl_20354 scaffold_18 + retained_intron 822928-823047 asmbl_20355 // Retained and Spliced Intron # retained_intron 1434071-1434201 (orient:+) max_ev_support = 2 # spliced_intron 1434071-1434201 (orient:+) max_ev_support = 3 scaffold_18 + intron 1434071-1434201 asmbl_20377 scaffold_18 + retained_intron 1434071-1434201 asmbl_20378 // Retained and Spliced Intron # retained_intron 1499817-1499941 (orient:+) max_ev_support = 2 # spliced_intron 1499817-1499941 (orient:+) max_ev_support = 3 scaffold_18 + intron 1499817-1499941 asmbl_20379 scaffold_18 + retained_intron 1499817-1499941 asmbl_20380,asmbl_20381 // Retained and Spliced Intron # retained_intron 1500051-1500145 (orient:+) max_ev_support = 2 # spliced_intron 1500051-1500145 (orient:+) max_ev_support = 3 scaffold_18 + intron 1500051-1500145 asmbl_20379,asmbl_20381 scaffold_18 + retained_intron 1500051-1500145 asmbl_20380 // Exon Skipping and Retention # skipped_exon 1512768-1513566 (orient:+) max_ev_support = 2 # retained_exon 1512896-1512941 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 1512896-1512941 asmbl_20384 scaffold_18 + intron_skips_exon 1512768-1513566 asmbl_20383 // Exon Skipping and Retention # skipped_exon 1512722-1513566 (orient:+) max_ev_support = 1 # retained_exon 1512896-1512941 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 1512896-1512941 asmbl_20384 scaffold_18 + intron_skips_exon 1512722-1513566 asmbl_20385 // Retained and Spliced Intron # retained_intron 1621888-1621975 (orient:+) max_ev_support = 1 # spliced_intron 1621888-1621975 (orient:+) max_ev_support = 2 scaffold_18 + intron 1621888-1621975 asmbl_20393 scaffold_18 + retained_intron 1621888-1621975 asmbl_20394,asmbl_20396 // Retained and Spliced Intron # retained_intron 1860254-1860365 (orient:+) max_ev_support = 1 # spliced_intron 1860254-1860365 (orient:+) max_ev_support = 2 scaffold_18 + intron 1860254-1860365 asmbl_20409,asmbl_20410 scaffold_18 + retained_intron 1860254-1860365 asmbl_20411 // Retained and Spliced Intron # retained_intron 2082391-2082658 (orient:+) max_ev_support = 2 # spliced_intron 2082391-2082658 (orient:+) max_ev_support = 2 scaffold_18 + intron 2082391-2082658 asmbl_20429,asmbl_20430,asmbl_20432 scaffold_18 + retained_intron 2082391-2082658 asmbl_20428,asmbl_20431 // Retained and Spliced Intron # retained_intron 2535900-2536164 (orient:+) max_ev_support = 1 # spliced_intron 2535900-2536164 (orient:+) max_ev_support = 3 scaffold_18 + intron 2535900-2536164 asmbl_20436 scaffold_18 + retained_intron 2535900-2536164 asmbl_20437 // Exon Skipping and Retention # skipped_exon 2832889-2835573 (orient:+) max_ev_support = 3 # retained_exon 2833801-2834055 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 2833801-2834055 asmbl_20449 scaffold_18 + intron_skips_exon 2832889-2835573 asmbl_20448 // Retained and Spliced Intron # retained_intron 2834262-2835573 (orient:+) max_ev_support = 2 # spliced_intron 2834262-2835573 (orient:+) max_ev_support = 2 scaffold_18 + intron 2834262-2835573 asmbl_20450 scaffold_18 + retained_intron 2834262-2835573 asmbl_20453 // Retained and Spliced Intron # retained_intron 2835065-2835573 (orient:+) max_ev_support = 2 # spliced_intron 2835065-2835573 (orient:+) max_ev_support = 1 scaffold_18 + intron 2835065-2835573 asmbl_20452 scaffold_18 + retained_intron 2835065-2835573 asmbl_20453 // Retained and Spliced Intron # retained_intron 2835248-2835573 (orient:+) max_ev_support = 2 # spliced_intron 2835248-2835573 (orient:+) max_ev_support = 1 scaffold_18 + intron 2835248-2835573 asmbl_20455 scaffold_18 + retained_intron 2835248-2835573 asmbl_20453 // Retained and Spliced Intron # retained_intron 3213856-3213934 (orient:+) max_ev_support = 2 # spliced_intron 3213856-3213934 (orient:+) max_ev_support = 2 scaffold_18 + intron 3213856-3213934 asmbl_20476 scaffold_18 + retained_intron 3213856-3213934 asmbl_20477 // Retained and Spliced Intron # retained_intron 3220749-3220823 (orient:+) max_ev_support = 1 # spliced_intron 3220749-3220823 (orient:+) max_ev_support = 2 scaffold_18 + intron 3220749-3220823 asmbl_20478 scaffold_18 + retained_intron 3220749-3220823 asmbl_20479 // Exon Skipping and Retention # skipped_exon 3636836-3638415 (orient:+) max_ev_support = 2 # retained_exon 3637424-3637456 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 3637424-3637456 asmbl_20494,asmbl_20495 scaffold_18 + intron_skips_exon 3636836-3638415 asmbl_20492,asmbl_20493 // Retained and Spliced Intron # retained_intron 4077684-4077771 (orient:+) max_ev_support = 2 # spliced_intron 4077684-4077771 (orient:+) max_ev_support = 2 scaffold_18 + intron 4077684-4077771 asmbl_20518,asmbl_20519,asmbl_20520,asmbl_20521 scaffold_18 + retained_intron 4077684-4077771 asmbl_20522 // Exon Skipping and Retention # skipped_exon 4122717-4123966 (orient:+) max_ev_support = 3 # retained_exon 4123158-4123280 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 4123158-4123280 asmbl_20525,asmbl_20527 scaffold_18 + intron_skips_exon 4122717-4123966 asmbl_20524,asmbl_20526 // Retained and Spliced Intron # retained_intron 4308398-4308494 (orient:+) max_ev_support = 1 # spliced_intron 4308398-4308494 (orient:+) max_ev_support = 1 scaffold_18 + intron 4308398-4308494 asmbl_20537 scaffold_18 + retained_intron 4308398-4308494 asmbl_20538 // Exon Skipping and Retention # skipped_exon 4463410-4465472 (orient:+) max_ev_support = 2 # retained_exon 4463867-4463917 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 4463867-4463917 asmbl_20550 scaffold_18 + intron_skips_exon 4463410-4465472 asmbl_20551,asmbl_20552 // Retained and Spliced Intron # retained_intron 4570648-4570743 (orient:+) max_ev_support = 2 # spliced_intron 4570648-4570743 (orient:+) max_ev_support = 1 scaffold_18 + intron 4570648-4570743 asmbl_20563 scaffold_18 + retained_intron 4570648-4570743 asmbl_20559,asmbl_20561 // Retained and Spliced Intron # retained_intron 4570648-4570746 (orient:+) max_ev_support = 2 # spliced_intron 4570648-4570746 (orient:+) max_ev_support = 1 scaffold_18 + intron 4570648-4570746 asmbl_20562 scaffold_18 + retained_intron 4570648-4570746 asmbl_20559,asmbl_20561 // Retained and Spliced Intron # retained_intron 4574673-4575183 (orient:+) max_ev_support = 1 # spliced_intron 4574673-4575183 (orient:+) max_ev_support = 2 scaffold_18 + intron 4574673-4575183 asmbl_20558,asmbl_20559,asmbl_20562,asmbl_20563,asmbl_20564 scaffold_18 + retained_intron 4574673-4575183 asmbl_20561 // Retained and Spliced Intron # retained_intron 4571830-4572199 (orient:+) max_ev_support = 1 # spliced_intron 4571830-4572199 (orient:+) max_ev_support = 2 scaffold_18 + intron 4571830-4572199 asmbl_20559,asmbl_20561,asmbl_20562,asmbl_20563 scaffold_18 + retained_intron 4571830-4572199 asmbl_20564 // Retained and Spliced Intron # retained_intron 4614322-4614432 (orient:+) max_ev_support = 1 # spliced_intron 4614322-4614432 (orient:+) max_ev_support = 3 scaffold_18 + intron 4614322-4614432 asmbl_20566,asmbl_20567 scaffold_18 + retained_intron 4614322-4614432 asmbl_20568 // Retained and Spliced Intron # retained_intron 4690186-4690277 (orient:+) max_ev_support = 2 # spliced_intron 4690186-4690277 (orient:+) max_ev_support = 1 scaffold_18 + intron 4690186-4690277 asmbl_20572,asmbl_20574 scaffold_18 + retained_intron 4690186-4690277 asmbl_20573 // Retained and Spliced Intron # retained_intron 4708153-4708225 (orient:+) max_ev_support = 2 # spliced_intron 4708153-4708225 (orient:+) max_ev_support = 2 scaffold_18 + intron 4708153-4708225 asmbl_20578 scaffold_18 + retained_intron 4708153-4708225 asmbl_20579 // Exon Skipping and Retention # skipped_exon 4767150-4768831 (orient:+) max_ev_support = 1 # retained_exon 4768038-4768115 (orient:+) max_ev_support = 4 scaffold_18 + retained_exons 4768038-4768115 asmbl_20585,asmbl_20589 scaffold_18 + intron_skips_exon 4767150-4768831 asmbl_20591,asmbl_20593 // Retained and Spliced Intron # retained_intron 4768861-4768995 (orient:+) max_ev_support = 4 # spliced_intron 4768861-4768995 (orient:+) max_ev_support = 2 scaffold_18 + intron 4768861-4768995 asmbl_20589,asmbl_20593 scaffold_18 + retained_intron 4768861-4768995 asmbl_20585,asmbl_20591 // Exon Skipping and Retention # skipped_exon 4848613-4849494 (orient:+) max_ev_support = 3 # retained_exon 4848999-4849092 (orient:+) max_ev_support = 5 scaffold_18 + retained_exons 4848999-4849092 asmbl_20600 scaffold_18 + intron_skips_exon 4848613-4849494 asmbl_20601 // Retained and Spliced Intron # retained_intron 4848613-4848998 (orient:+) max_ev_support = 3 # spliced_intron 4848613-4848998 (orient:+) max_ev_support = 5 scaffold_18 + intron 4848613-4848998 asmbl_20600 scaffold_18 + retained_intron 4848613-4848998 asmbl_20602,asmbl_20603 // Retained and Spliced Intron # retained_intron 5583163-5583302 (orient:+) max_ev_support = 7 # spliced_intron 5583163-5583302 (orient:+) max_ev_support = 1 scaffold_18 + intron 5583163-5583302 asmbl_20622 scaffold_18 + retained_intron 5583163-5583302 asmbl_20621 // Retained and Spliced Intron # retained_intron 5606473-5606848 (orient:+) max_ev_support = 2 # spliced_intron 5606473-5606848 (orient:+) max_ev_support = 2 scaffold_18 + intron 5606473-5606848 asmbl_20627 scaffold_18 + retained_intron 5606473-5606848 asmbl_20626 // Retained and Spliced Intron # retained_intron 5725934-5726148 (orient:+) max_ev_support = 2 # spliced_intron 5725934-5726148 (orient:+) max_ev_support = 3 scaffold_18 + intron 5725934-5726148 asmbl_20628 scaffold_18 + retained_intron 5725934-5726148 asmbl_20629 // Retained and Spliced Intron # retained_intron 5730383-5730838 (orient:+) max_ev_support = 3 # spliced_intron 5730383-5730838 (orient:+) max_ev_support = 3 scaffold_18 + intron 5730383-5730838 asmbl_20630 scaffold_18 + retained_intron 5730383-5730838 asmbl_20631 // Exon Skipping and Retention # skipped_exon 5779433-5781380 (orient:+) max_ev_support = 1 # retained_exon 5780359-5780463 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 5780359-5780463 asmbl_20635,asmbl_20637 scaffold_18 + intron_skips_exon 5779433-5781380 asmbl_20638 // Retained and Spliced Intron # retained_intron 5910191-5910450 (orient:+) max_ev_support = 2 # spliced_intron 5910191-5910450 (orient:+) max_ev_support = 2 scaffold_18 + intron 5910191-5910450 asmbl_20651 scaffold_18 + retained_intron 5910191-5910450 asmbl_20650 // Retained and Spliced Intron # retained_intron 5988273-5988742 (orient:+) max_ev_support = 2 # spliced_intron 5988273-5988742 (orient:+) max_ev_support = 2 scaffold_18 + intron 5988273-5988742 asmbl_20674,asmbl_20675 scaffold_18 + retained_intron 5988273-5988742 asmbl_20671,asmbl_20680 // Exon Skipping and Retention # skipped_exon 5984775-5987240 (orient:+) max_ev_support = 2 # retained_exon 5985192-5985311 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 5985192-5985311 asmbl_20674,asmbl_20680 scaffold_18 + intron_skips_exon 5984775-5987240 asmbl_20671,asmbl_20675 // Retained and Spliced Intron # retained_intron 5984775-5985191 (orient:+) max_ev_support = 1 # spliced_intron 5984775-5985191 (orient:+) max_ev_support = 2 scaffold_18 + intron 5984775-5985191 asmbl_20674,asmbl_20677,asmbl_20680 scaffold_18 + retained_intron 5984775-5985191 asmbl_20678,asmbl_20679 // Retained and Spliced Intron # retained_intron 5990415-5990661 (orient:+) max_ev_support = 1 # spliced_intron 5990415-5990661 (orient:+) max_ev_support = 2 scaffold_18 + intron 5990415-5990661 asmbl_20671,asmbl_20674,asmbl_20675,asmbl_20680 scaffold_18 + retained_intron 5990415-5990661 asmbl_20681 // Exon Skipping and Retention # skipped_exon 6269946-6270567 (orient:+) max_ev_support = 2 # retained_exon 6270108-6270145 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 6270108-6270145 asmbl_20697 scaffold_18 + intron_skips_exon 6269946-6270567 asmbl_20698 // Retained and Spliced Intron # retained_intron 6294324-6294450 (orient:+) max_ev_support = 3 # spliced_intron 6294324-6294450 (orient:+) max_ev_support = 2 scaffold_18 + intron 6294324-6294450 asmbl_20700 scaffold_18 + retained_intron 6294324-6294450 asmbl_20699 // Retained and Spliced Intron # retained_intron 6423799-6424289 (orient:+) max_ev_support = 4 # spliced_intron 6423799-6424289 (orient:+) max_ev_support = 2 scaffold_18 + intron 6423799-6424289 asmbl_20707 scaffold_18 + retained_intron 6423799-6424289 asmbl_20706 // Retained and Spliced Intron # retained_intron 6425925-6426952 (orient:+) max_ev_support = 3 # spliced_intron 6425925-6426952 (orient:+) max_ev_support = 3 scaffold_18 + intron 6425925-6426952 asmbl_20707 scaffold_18 + retained_intron 6425925-6426952 asmbl_20706 // Retained and Spliced Intron # retained_intron 6425016-6425279 (orient:+) max_ev_support = 2 # spliced_intron 6425016-6425279 (orient:+) max_ev_support = 2 scaffold_18 + intron 6425016-6425279 asmbl_20706,asmbl_20707 scaffold_18 + retained_intron 6425016-6425279 asmbl_20708 // Retained and Spliced Intron # retained_intron 6813788-6813985 (orient:+) max_ev_support = 2 # spliced_intron 6813788-6813985 (orient:+) max_ev_support = 2 scaffold_18 + intron 6813788-6813985 asmbl_20714,asmbl_20715 scaffold_18 + retained_intron 6813788-6813985 asmbl_20716 // Retained and Spliced Intron # retained_intron 6859375-6859476 (orient:+) max_ev_support = 2 # spliced_intron 6859375-6859476 (orient:+) max_ev_support = 2 scaffold_18 + intron 6859375-6859476 asmbl_20717 scaffold_18 + retained_intron 6859375-6859476 asmbl_20718 // Exon Skipping and Retention # skipped_exon 6901687-6902245 (orient:+) max_ev_support = 2 # retained_exon 6901792-6901898 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 6901792-6901898 asmbl_20720 scaffold_18 + intron_skips_exon 6901687-6902245 asmbl_20721 // Exon Skipping and Retention # skipped_exon 7169403-7169698 (orient:+) max_ev_support = 2 # retained_exon 7169511-7169613 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 7169511-7169613 asmbl_20740 scaffold_18 + intron_skips_exon 7169403-7169698 asmbl_20742 // Retained and Spliced Intron # retained_intron 7199463-7200059 (orient:+) max_ev_support = 3 # spliced_intron 7199463-7200059 (orient:+) max_ev_support = 1 scaffold_18 + intron 7199463-7200059 asmbl_20750 scaffold_18 + retained_intron 7199463-7200059 asmbl_20749 // Retained and Spliced Intron # retained_intron 7199469-7200059 (orient:+) max_ev_support = 3 # spliced_intron 7199469-7200059 (orient:+) max_ev_support = 3 scaffold_18 + intron 7199469-7200059 asmbl_20748 scaffold_18 + retained_intron 7199469-7200059 asmbl_20749 // Exon Skipping and Retention # skipped_exon 7228357-7231127 (orient:+) max_ev_support = 2 # retained_exon 7229478-7229525 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 7229478-7229525 asmbl_20753,asmbl_20755 scaffold_18 + intron_skips_exon 7228357-7231127 asmbl_20756 // Exon Skipping and Retention # skipped_exon 7241529-7241972 (orient:+) max_ev_support = 2 # retained_exon 7241822-7241881 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 7241822-7241881 asmbl_20760 scaffold_18 + intron_skips_exon 7241529-7241972 asmbl_20761 // Retained and Spliced Intron # retained_intron 7648011-7649078 (orient:+) max_ev_support = 2 # spliced_intron 7648011-7649078 (orient:+) max_ev_support = 1 scaffold_18 + intron 7648011-7649078 asmbl_20786 scaffold_18 + retained_intron 7648011-7649078 asmbl_20784,asmbl_20785 // Retained and Spliced Intron # retained_intron 7653749-7654074 (orient:+) max_ev_support = 2 # spliced_intron 7653749-7654074 (orient:+) max_ev_support = 3 scaffold_18 + intron 7653749-7654074 asmbl_20788 scaffold_18 + retained_intron 7653749-7654074 asmbl_20789 // Retained and Spliced Intron # retained_intron 7661288-7661516 (orient:+) max_ev_support = 1 # spliced_intron 7661288-7661516 (orient:+) max_ev_support = 1 scaffold_18 + intron 7661288-7661516 asmbl_20795,asmbl_20796 scaffold_18 + retained_intron 7661288-7661516 asmbl_20793,asmbl_20794 // Exon Skipping and Retention # skipped_exon 7661637-7662196 (orient:+) max_ev_support = 1 # retained_exon 7662032-7662112 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 7662032-7662112 asmbl_20793 scaffold_18 + intron_skips_exon 7661637-7662196 asmbl_20795 // Retained and Spliced Intron # retained_intron 7662113-7662196 (orient:+) max_ev_support = 1 # spliced_intron 7662113-7662196 (orient:+) max_ev_support = 1 scaffold_18 + intron 7662113-7662196 asmbl_20793,asmbl_20794 scaffold_18 + retained_intron 7662113-7662196 asmbl_20796,asmbl_20797 // Retained and Spliced Intron # retained_intron 7686295-7686459 (orient:+) max_ev_support = 4 # spliced_intron 7686295-7686459 (orient:+) max_ev_support = 2 scaffold_18 + intron 7686295-7686459 asmbl_20804,asmbl_20806,asmbl_20807,asmbl_20808,asmbl_20809,asmbl_20810 scaffold_18 + retained_intron 7686295-7686459 asmbl_20801,asmbl_20802 // Retained and Spliced Intron # retained_intron 7686561-7686708 (orient:+) max_ev_support = 4 # spliced_intron 7686561-7686708 (orient:+) max_ev_support = 1 scaffold_18 + intron 7686561-7686708 asmbl_20807,asmbl_20809 scaffold_18 + retained_intron 7686561-7686708 asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810 // Retained and Spliced Intron # retained_intron 7686561-7686884 (orient:+) max_ev_support = 4 # spliced_intron 7686561-7686884 (orient:+) max_ev_support = 2 scaffold_18 + intron 7686561-7686884 asmbl_20804,asmbl_20806 scaffold_18 + retained_intron 7686561-7686884 asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810 // Retained and Spliced Intron # retained_intron 7686792-7686884 (orient:+) max_ev_support = 4 # spliced_intron 7686792-7686884 (orient:+) max_ev_support = 1 scaffold_18 + intron 7686792-7686884 asmbl_20807,asmbl_20809 scaffold_18 + retained_intron 7686792-7686884 asmbl_20801,asmbl_20802,asmbl_20808,asmbl_20810 // Exon Skipping and Retention # skipped_exon 7686561-7686884 (orient:+) max_ev_support = 2 # retained_exon 7686709-7686791 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 7686709-7686791 asmbl_20807,asmbl_20809 scaffold_18 + intron_skips_exon 7686561-7686884 asmbl_20804,asmbl_20806 // Exon Skipping and Retention # skipped_exon 7867463-7867988 (orient:+) max_ev_support = 2 # retained_exon 7867647-7867915 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 7867647-7867712,7867863-7867915 asmbl_20822 scaffold_18 + retained_exons 7867647-7867749,7867863-7867915 asmbl_20823,asmbl_20829 scaffold_18 + intron_skips_exon 7867463-7867988 asmbl_20826 // Retained and Spliced Intron # retained_intron 7867916-7867988 (orient:+) max_ev_support = 2 # spliced_intron 7867916-7867988 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867916-7867988 asmbl_20822,asmbl_20823,asmbl_20829 scaffold_18 + retained_intron 7867916-7867988 asmbl_20824,asmbl_20825,asmbl_20827,asmbl_20828,asmbl_20831,asmbl_20833 // Retained and Spliced Intron # retained_intron 7867713-7867862 (orient:+) max_ev_support = 2 # spliced_intron 7867713-7867862 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867713-7867862 asmbl_20822,asmbl_20831 scaffold_18 + retained_intron 7867713-7867862 asmbl_20825,asmbl_20827,asmbl_20833 // Retained and Spliced Intron # retained_intron 7867750-7867862 (orient:+) max_ev_support = 2 # spliced_intron 7867750-7867862 (orient:+) max_ev_support = 2 scaffold_18 + intron 7867750-7867862 asmbl_20823,asmbl_20824,asmbl_20828,asmbl_20829 scaffold_18 + retained_intron 7867750-7867862 asmbl_20825,asmbl_20827,asmbl_20833 // Retained and Spliced Intron # retained_intron 7867463-7867646 (orient:+) max_ev_support = 2 # spliced_intron 7867463-7867646 (orient:+) max_ev_support = 3 scaffold_18 + intron 7867463-7867646 asmbl_20822,asmbl_20823,asmbl_20824,asmbl_20825,asmbl_20828,asmbl_20829,asmbl_20831,asmbl_20833 scaffold_18 + retained_intron 7867463-7867646 asmbl_20827 // Retained and Spliced Intron # retained_intron 7867463-7867988 (orient:+) max_ev_support = 2 # spliced_intron 7867463-7867988 (orient:+) max_ev_support = 2 scaffold_18 + intron 7867463-7867988 asmbl_20826 scaffold_18 + retained_intron 7867463-7867988 asmbl_20827 // Exon Skipping and Retention # skipped_exon 8399580-8401325 (orient:+) max_ev_support = 1 # retained_exon 8400470-8400594 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 8400470-8400594 asmbl_20857 scaffold_18 + intron_skips_exon 8399580-8401325 asmbl_20861 // Retained and Spliced Intron # retained_intron 8399580-8400469 (orient:+) max_ev_support = 1 # spliced_intron 8399580-8400469 (orient:+) max_ev_support = 2 scaffold_18 + intron 8399580-8400469 asmbl_20857,asmbl_20859 scaffold_18 + retained_intron 8399580-8400469 asmbl_20860,asmbl_20862 // Retained and Spliced Intron # retained_intron 8399580-8401325 (orient:+) max_ev_support = 1 # spliced_intron 8399580-8401325 (orient:+) max_ev_support = 1 scaffold_18 + intron 8399580-8401325 asmbl_20861 scaffold_18 + retained_intron 8399580-8401325 asmbl_20860,asmbl_20862 // Retained and Spliced Intron # retained_intron 8400595-8401901 (orient:+) max_ev_support = 1 # spliced_intron 8400595-8401901 (orient:+) max_ev_support = 2 scaffold_18 + intron 8400595-8401901 asmbl_20857 scaffold_18 + retained_intron 8400595-8401901 asmbl_20860 // Retained and Spliced Intron # retained_intron 8401454-8401901 (orient:+) max_ev_support = 1 # spliced_intron 8401454-8401901 (orient:+) max_ev_support = 1 scaffold_18 + intron 8401454-8401901 asmbl_20859,asmbl_20861,asmbl_20862 scaffold_18 + retained_intron 8401454-8401901 asmbl_20860 // Exon Skipping and Retention # skipped_exon 8400595-8401901 (orient:+) max_ev_support = 2 # retained_exon 8401326-8401453 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 8401326-8401453 asmbl_20861 scaffold_18 + intron_skips_exon 8400595-8401901 asmbl_20857 // Retained and Spliced Intron # retained_intron 8726003-8726179 (orient:+) max_ev_support = 3 # spliced_intron 8726003-8726179 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726003-8726179 asmbl_20884,asmbl_20886,asmbl_20888 scaffold_18 + retained_intron 8726003-8726179 asmbl_20881,asmbl_20882,asmbl_20885 // Retained and Spliced Intron # retained_intron 8726003-8726193 (orient:+) max_ev_support = 3 # spliced_intron 8726003-8726193 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726003-8726193 asmbl_20883,asmbl_20887 scaffold_18 + retained_intron 8726003-8726193 asmbl_20881,asmbl_20882,asmbl_20885 // Retained and Spliced Intron # retained_intron 8726290-8726425 (orient:+) max_ev_support = 3 # spliced_intron 8726290-8726425 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726290-8726425 asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20887,asmbl_20888 scaffold_18 + retained_intron 8726290-8726425 asmbl_20881,asmbl_20882 // Retained and Spliced Intron # retained_intron 8726290-8727002 (orient:+) max_ev_support = 3 # spliced_intron 8726290-8727002 (orient:+) max_ev_support = 1 scaffold_18 + intron 8726290-8727002 asmbl_20886 scaffold_18 + retained_intron 8726290-8727002 asmbl_20881 // Retained and Spliced Intron # retained_intron 8726455-8726561 (orient:+) max_ev_support = 3 # spliced_intron 8726455-8726561 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726455-8726561 asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20888 scaffold_18 + retained_intron 8726455-8726561 asmbl_20881,asmbl_20882,asmbl_20887 // Retained and Spliced Intron # retained_intron 8726674-8726780 (orient:+) max_ev_support = 3 # spliced_intron 8726674-8726780 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726674-8726780 asmbl_20882,asmbl_20883,asmbl_20884,asmbl_20885,asmbl_20888 scaffold_18 + retained_intron 8726674-8726780 asmbl_20881 // Retained and Spliced Intron # retained_intron 8726889-8727002 (orient:+) max_ev_support = 1 # spliced_intron 8726889-8727002 (orient:+) max_ev_support = 2 scaffold_18 + intron 8726889-8727002 asmbl_20882,asmbl_20883,asmbl_20884,asmbl_20885 scaffold_18 + retained_intron 8726889-8727002 asmbl_20881,asmbl_20888 // Exon Skipping and Retention # skipped_exon 8726290-8727002 (orient:+) max_ev_support = 1 # retained_exon 8726781-8726888 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 8726781-8726888 asmbl_20882 scaffold_18 + intron_skips_exon 8726290-8727002 asmbl_20886 // Retained and Spliced Intron # retained_intron 9164378-9164478 (orient:+) max_ev_support = 2 # spliced_intron 9164378-9164478 (orient:+) max_ev_support = 3 scaffold_18 + intron 9164378-9164478 asmbl_20900,asmbl_20902 scaffold_18 + retained_intron 9164378-9164478 asmbl_20901 // Retained and Spliced Intron # retained_intron 9163565-9163645 (orient:+) max_ev_support = 2 # spliced_intron 9163565-9163645 (orient:+) max_ev_support = 3 scaffold_18 + intron 9163565-9163645 asmbl_20900,asmbl_20901 scaffold_18 + retained_intron 9163565-9163645 asmbl_20902 // Exon Skipping and Retention # skipped_exon 9168049-9170424 (orient:+) max_ev_support = 3 # retained_exon 9169889-9170255 (orient:+) max_ev_support = 3 scaffold_18 + retained_exons 9169889-9170005,9170109-9170255 asmbl_20903 scaffold_18 + intron_skips_exon 9168049-9170424 asmbl_20904,asmbl_20906 // Retained and Spliced Intron # retained_intron 9170256-9170424 (orient:+) max_ev_support = 2 # spliced_intron 9170256-9170424 (orient:+) max_ev_support = 3 scaffold_18 + intron 9170256-9170424 asmbl_20903 scaffold_18 + retained_intron 9170256-9170424 asmbl_20905 // Exon Skipping and Retention # skipped_exon 10128612-10130396 (orient:+) max_ev_support = 1 # retained_exon 10129688-10129978 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 10129688-10129978 asmbl_20926 scaffold_18 + intron_skips_exon 10128612-10130396 asmbl_20927,asmbl_20928 // Retained and Spliced Intron # retained_intron 11326733-11326957 (orient:+) max_ev_support = 2 # spliced_intron 11326733-11326957 (orient:+) max_ev_support = 1 scaffold_18 + intron 11326733-11326957 asmbl_20965,asmbl_20966 scaffold_18 + retained_intron 11326733-11326957 asmbl_20962,asmbl_20963 // Retained and Spliced Intron # retained_intron 11328359-11328484 (orient:+) max_ev_support = 2 # spliced_intron 11328359-11328484 (orient:+) max_ev_support = 2 scaffold_18 + intron 11328359-11328484 asmbl_20963,asmbl_20965,asmbl_20966 scaffold_18 + retained_intron 11328359-11328484 asmbl_20962 // Retained and Spliced Intron # retained_intron 11328837-11329142 (orient:+) max_ev_support = 1 # spliced_intron 11328837-11329142 (orient:+) max_ev_support = 2 scaffold_18 + intron 11328837-11329142 asmbl_20963,asmbl_20965,asmbl_20966 scaffold_18 + retained_intron 11328837-11329142 asmbl_20962 // Retained and Spliced Intron # retained_intron 11327584-11327791 (orient:+) max_ev_support = 2 # spliced_intron 11327584-11327791 (orient:+) max_ev_support = 1 scaffold_18 + intron 11327584-11327791 asmbl_20962,asmbl_20966 scaffold_18 + retained_intron 11327584-11327791 asmbl_20963,asmbl_20965 // Retained and Spliced Intron # retained_intron 11329326-11329551 (orient:+) max_ev_support = 2 # spliced_intron 11329326-11329551 (orient:+) max_ev_support = 2 scaffold_18 + intron 11329326-11329551 asmbl_20962,asmbl_20963,asmbl_20965,asmbl_20966 scaffold_18 + retained_intron 11329326-11329551 asmbl_20964 // Retained and Spliced Intron # retained_intron 11472870-11472947 (orient:+) max_ev_support = 3 # spliced_intron 11472870-11472947 (orient:+) max_ev_support = 2 scaffold_18 + intron 11472870-11472947 asmbl_20968 scaffold_18 + retained_intron 11472870-11472947 asmbl_20967 // Exon Skipping and Retention # skipped_exon 11912305-11913975 (orient:+) max_ev_support = 1 # retained_exon 11912892-11912993 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 11912892-11912993 asmbl_20977 scaffold_18 + intron_skips_exon 11912305-11913975 asmbl_20978 // Exon Skipping and Retention # skipped_exon 11912994-11914248 (orient:+) max_ev_support = 2 # retained_exon 11913976-11914077 (orient:+) max_ev_support = 1 scaffold_18 + retained_exons 11913976-11914077 asmbl_20978 scaffold_18 + intron_skips_exon 11912994-11914248 asmbl_20977 // Retained and Spliced Intron # retained_intron 11950782-11950808 (orient:+) max_ev_support = 2 # spliced_intron 11950782-11950808 (orient:+) max_ev_support = 1 scaffold_18 + intron 11950782-11950808 asmbl_20979 scaffold_18 + retained_intron 11950782-11950808 asmbl_20980 // Exon Skipping and Retention # skipped_exon 13113219-13113865 (orient:+) max_ev_support = 2 # retained_exon 13113652-13113777 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 13113652-13113777 asmbl_21012,asmbl_21014 scaffold_18 + intron_skips_exon 13113219-13113865 asmbl_21013,asmbl_21015 // Exon Skipping and Retention # skipped_exon 13267632-13268828 (orient:+) max_ev_support = 2 # retained_exon 13268341-13268520 (orient:+) max_ev_support = 2 scaffold_18 + retained_exons 13268341-13268520 asmbl_21025 scaffold_18 + intron_skips_exon 13267632-13268828 asmbl_21026 // Retained and Spliced Intron # retained_intron 13649242-13649267 (orient:+) max_ev_support = 1 # spliced_intron 13649242-13649267 (orient:+) max_ev_support = 1 scaffold_18 + intron 13649242-13649267 asmbl_21049 scaffold_18 + retained_intron 13649242-13649267 asmbl_21048 // Retained and Spliced Intron # retained_intron 13649190-13649215 (orient:+) max_ev_support = 1 # spliced_intron 13649190-13649215 (orient:+) max_ev_support = 1 scaffold_18 + intron 13649190-13649215 asmbl_21048 scaffold_18 + retained_intron 13649190-13649215 asmbl_21049 // Retained and Spliced Intron # retained_intron 13804460-13804704 (orient:+) max_ev_support = 2 # spliced_intron 13804460-13804704 (orient:+) max_ev_support = 3 scaffold_18 + intron 13804460-13804704 asmbl_21054,asmbl_21055,asmbl_21060 scaffold_18 + retained_intron 13804460-13804704 asmbl_21056,asmbl_21059 // Retained and Spliced Intron # retained_intron 13805940-13806190 (orient:+) max_ev_support = 1 # spliced_intron 13805940-13806190 (orient:+) max_ev_support = 3 scaffold_18 + intron 13805940-13806190 asmbl_21054,asmbl_21055,asmbl_21056 scaffold_18 + retained_intron 13805940-13806190 asmbl_21059,asmbl_21060 // Retained and Spliced Intron # retained_intron 96182-96339 (orient:-) max_ev_support = 2 # spliced_intron 96182-96339 (orient:-) max_ev_support = 3 scaffold_19 - intron 96182-96339 asmbl_21185 scaffold_19 - retained_intron 96182-96339 asmbl_21187 // Retained and Spliced Intron # retained_intron 96182-96601 (orient:-) max_ev_support = 2 # spliced_intron 96182-96601 (orient:-) max_ev_support = 3 scaffold_19 - intron 96182-96601 asmbl_21186 scaffold_19 - retained_intron 96182-96601 asmbl_21187 // Retained and Spliced Intron # retained_intron 628249-628359 (orient:-) max_ev_support = 3 # spliced_intron 628249-628359 (orient:-) max_ev_support = 2 scaffold_19 - intron 628249-628359 asmbl_21195 scaffold_19 - retained_intron 628249-628359 asmbl_21192,asmbl_21193,asmbl_21194 // Retained and Spliced Intron # retained_intron 1039595-1040154 (orient:-) max_ev_support = 1 # spliced_intron 1039595-1040154 (orient:-) max_ev_support = 1 scaffold_19 - intron 1039595-1040154 asmbl_21218 scaffold_19 - retained_intron 1039595-1040154 asmbl_21217 // Retained and Spliced Intron # retained_intron 1106060-1106189 (orient:-) max_ev_support = 2 # spliced_intron 1106060-1106189 (orient:-) max_ev_support = 3 scaffold_19 - intron 1106060-1106189 asmbl_21228,asmbl_21229,asmbl_21231 scaffold_19 - retained_intron 1106060-1106189 asmbl_21230,asmbl_21235 // Retained and Spliced Intron # retained_intron 2785763-2785796 (orient:-) max_ev_support = 2 # spliced_intron 2785763-2785796 (orient:-) max_ev_support = 1 scaffold_19 - intron 2785763-2785796 asmbl_21271 scaffold_19 - retained_intron 2785763-2785796 asmbl_21270 // Retained and Spliced Intron # retained_intron 3309537-3309592 (orient:-) max_ev_support = 3 # spliced_intron 3309537-3309592 (orient:-) max_ev_support = 1 scaffold_19 - intron 3309537-3309592 asmbl_21306 scaffold_19 - retained_intron 3309537-3309592 asmbl_21305 // Exon Skipping and Retention # skipped_exon 3547741-3548310 (orient:-) max_ev_support = 1 # retained_exon 3548064-3548176 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 3548064-3548176 asmbl_21319 scaffold_19 - intron_skips_exon 3547741-3548310 asmbl_21320 // Exon Skipping and Retention # skipped_exon 3669778-3671440 (orient:-) max_ev_support = 3 # retained_exon 3670631-3671048 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 3670631-3671048 asmbl_21324 scaffold_19 - intron_skips_exon 3669778-3671440 asmbl_21323,asmbl_21330 // Retained and Spliced Intron # retained_intron 3668736-3668829 (orient:-) max_ev_support = 2 # spliced_intron 3668736-3668829 (orient:-) max_ev_support = 3 scaffold_19 - intron 3668736-3668829 asmbl_21322,asmbl_21323,asmbl_21324,asmbl_21326,asmbl_21329 scaffold_19 - retained_intron 3668736-3668829 asmbl_21325,asmbl_21330 // Retained and Spliced Intron # retained_intron 3669778-3669984 (orient:-) max_ev_support = 2 # spliced_intron 3669778-3669984 (orient:-) max_ev_support = 3 scaffold_19 - intron 3669778-3669984 asmbl_21322 scaffold_19 - retained_intron 3669778-3669984 asmbl_21326,asmbl_21329 // Exon Skipping and Retention # skipped_exon 4792260-4793390 (orient:-) max_ev_support = 3 # retained_exon 4792848-4792986 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 4792848-4792986 asmbl_21337 scaffold_19 - intron_skips_exon 4792260-4793390 asmbl_21335 // Retained and Spliced Intron # retained_intron 4808048-4808289 (orient:-) max_ev_support = 1 # spliced_intron 4808048-4808289 (orient:-) max_ev_support = 2 scaffold_19 - intron 4808048-4808289 asmbl_21340 scaffold_19 - retained_intron 4808048-4808289 asmbl_21341 // Retained and Spliced Intron # retained_intron 5345825-5345940 (orient:-) max_ev_support = 1 # spliced_intron 5345825-5345940 (orient:-) max_ev_support = 2 scaffold_19 - intron 5345825-5345940 asmbl_21357,asmbl_21358 scaffold_19 - retained_intron 5345825-5345940 asmbl_21361 // Exon Skipping and Retention # skipped_exon 5643838-5644201 (orient:-) max_ev_support = 1 # retained_exon 5643934-5644042 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 5643934-5644042 asmbl_21393 scaffold_19 - intron_skips_exon 5643838-5644201 asmbl_21392 // Retained and Spliced Intron # retained_intron 5648006-5648276 (orient:-) max_ev_support = 1 # spliced_intron 5648006-5648276 (orient:-) max_ev_support = 2 scaffold_19 - intron 5648006-5648276 asmbl_21394 scaffold_19 - retained_intron 5648006-5648276 asmbl_21395 // Exon Skipping and Retention # skipped_exon 6407454-6408818 (orient:-) max_ev_support = 1 # retained_exon 6407888-6407947 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 6407888-6407947 asmbl_21424 scaffold_19 - intron_skips_exon 6407454-6408818 asmbl_21425 // Exon Skipping and Retention # skipped_exon 6407454-6409048 (orient:-) max_ev_support = 2 # retained_exon 6407888-6408830 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 6407888-6407947,6408819-6408830 asmbl_21424 scaffold_19 - intron_skips_exon 6407454-6409048 asmbl_21423 // Retained and Spliced Intron # retained_intron 7366595-7366687 (orient:-) max_ev_support = 2 # spliced_intron 7366595-7366687 (orient:-) max_ev_support = 2 scaffold_19 - intron 7366595-7366687 asmbl_21450 scaffold_19 - retained_intron 7366595-7366687 asmbl_21449 // Retained and Spliced Intron # retained_intron 7586777-7586903 (orient:-) max_ev_support = 1 # spliced_intron 7586777-7586903 (orient:-) max_ev_support = 1 scaffold_19 - intron 7586777-7586903 asmbl_21454,asmbl_21455 scaffold_19 - retained_intron 7586777-7586903 asmbl_21453 // Retained and Spliced Intron # retained_intron 7586916-7587075 (orient:-) max_ev_support = 1 # spliced_intron 7586916-7587075 (orient:-) max_ev_support = 1 scaffold_19 - intron 7586916-7587075 asmbl_21455 scaffold_19 - retained_intron 7586916-7587075 asmbl_21453,asmbl_21454 // Retained and Spliced Intron # retained_intron 7588347-7588430 (orient:-) max_ev_support = 1 # spliced_intron 7588347-7588430 (orient:-) max_ev_support = 1 scaffold_19 - intron 7588347-7588430 asmbl_21453,asmbl_21454,asmbl_21456 scaffold_19 - retained_intron 7588347-7588430 asmbl_21455 // Retained and Spliced Intron # retained_intron 7669634-7671322 (orient:-) max_ev_support = 2 # spliced_intron 7669634-7671322 (orient:-) max_ev_support = 1 scaffold_19 - intron 7669634-7671322 asmbl_21460 scaffold_19 - retained_intron 7669634-7671322 asmbl_21459 // Retained and Spliced Intron # retained_intron 8124919-8125012 (orient:-) max_ev_support = 1 # spliced_intron 8124919-8125012 (orient:-) max_ev_support = 3 scaffold_19 - intron 8124919-8125012 asmbl_21484 scaffold_19 - retained_intron 8124919-8125012 asmbl_21485 // Retained and Spliced Intron # retained_intron 8219321-8219725 (orient:-) max_ev_support = 2 # spliced_intron 8219321-8219725 (orient:-) max_ev_support = 2 scaffold_19 - intron 8219321-8219725 asmbl_21492 scaffold_19 - retained_intron 8219321-8219725 asmbl_21491 // Retained and Spliced Intron # retained_intron 8218983-8219156 (orient:-) max_ev_support = 1 # spliced_intron 8218983-8219156 (orient:-) max_ev_support = 2 scaffold_19 - intron 8218983-8219156 asmbl_21491,asmbl_21492 scaffold_19 - retained_intron 8218983-8219156 asmbl_21493 // Retained and Spliced Intron # retained_intron 8331874-8332032 (orient:-) max_ev_support = 2 # spliced_intron 8331874-8332032 (orient:-) max_ev_support = 1 scaffold_19 - intron 8331874-8332032 asmbl_21502 scaffold_19 - retained_intron 8331874-8332032 asmbl_21501 // Exon Skipping and Retention # skipped_exon 8760674-8762277 (orient:-) max_ev_support = 2 # retained_exon 8761200-8761238 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 8761200-8761238 asmbl_21517 scaffold_19 - intron_skips_exon 8760674-8762277 asmbl_21518 // Retained and Spliced Intron # retained_intron 8870718-8870824 (orient:-) max_ev_support = 1 # spliced_intron 8870718-8870824 (orient:-) max_ev_support = 2 scaffold_19 - intron 8870718-8870824 asmbl_21522 scaffold_19 - retained_intron 8870718-8870824 asmbl_21523 // Retained and Spliced Intron # retained_intron 8872484-8872914 (orient:-) max_ev_support = 1 # spliced_intron 8872484-8872914 (orient:-) max_ev_support = 2 scaffold_19 - intron 8872484-8872914 asmbl_21522 scaffold_19 - retained_intron 8872484-8872914 asmbl_21524 // Exon Skipping and Retention # skipped_exon 9376163-9378679 (orient:-) max_ev_support = 2 # retained_exon 9376376-9376478 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 9376376-9376478 asmbl_21537 scaffold_19 - intron_skips_exon 9376163-9378679 asmbl_21536 // Retained and Spliced Intron # retained_intron 9488173-9488268 (orient:-) max_ev_support = 1 # spliced_intron 9488173-9488268 (orient:-) max_ev_support = 2 scaffold_19 - intron 9488173-9488268 asmbl_21540 scaffold_19 - retained_intron 9488173-9488268 asmbl_21542 // Exon Skipping and Retention # skipped_exon 10850753-10852820 (orient:-) max_ev_support = 3 # retained_exon 10851587-10851622 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 10851587-10851622 asmbl_21572 scaffold_19 - intron_skips_exon 10850753-10852820 asmbl_21567 // Retained and Spliced Intron # retained_intron 11458491-11458642 (orient:-) max_ev_support = 2 # spliced_intron 11458491-11458642 (orient:-) max_ev_support = 2 scaffold_19 - intron 11458491-11458642 asmbl_21595,asmbl_21596,asmbl_21597,asmbl_21598 scaffold_19 - retained_intron 11458491-11458642 asmbl_21594 // Retained and Spliced Intron # retained_intron 11460464-11460646 (orient:-) max_ev_support = 1 # spliced_intron 11460464-11460646 (orient:-) max_ev_support = 2 scaffold_19 - intron 11460464-11460646 asmbl_21595,asmbl_21597,asmbl_21599 scaffold_19 - retained_intron 11460464-11460646 asmbl_21596,asmbl_21598 // Retained and Spliced Intron # retained_intron 11457726-11458092 (orient:-) max_ev_support = 1 # spliced_intron 11457726-11458092 (orient:-) max_ev_support = 2 scaffold_19 - intron 11457726-11458092 asmbl_21594,asmbl_21595,asmbl_21596,asmbl_21598 scaffold_19 - retained_intron 11457726-11458092 asmbl_21597 // Retained and Spliced Intron # retained_intron 11459558-11459723 (orient:-) max_ev_support = 1 # spliced_intron 11459558-11459723 (orient:-) max_ev_support = 2 scaffold_19 - intron 11459558-11459723 asmbl_21595,asmbl_21596,asmbl_21597 scaffold_19 - retained_intron 11459558-11459723 asmbl_21598 // Retained and Spliced Intron # retained_intron 11468745-11468906 (orient:-) max_ev_support = 1 # spliced_intron 11468745-11468906 (orient:-) max_ev_support = 2 scaffold_19 - intron 11468745-11468906 asmbl_21602 scaffold_19 - retained_intron 11468745-11468906 asmbl_21603 // Retained and Spliced Intron # retained_intron 11470827-11471462 (orient:-) max_ev_support = 2 # spliced_intron 11470827-11471462 (orient:-) max_ev_support = 2 scaffold_19 - intron 11470827-11471462 asmbl_21605 scaffold_19 - retained_intron 11470827-11471462 asmbl_21604,asmbl_21606 // Retained and Spliced Intron # retained_intron 11475869-11475988 (orient:-) max_ev_support = 1 # spliced_intron 11475869-11475988 (orient:-) max_ev_support = 1 scaffold_19 - intron 11475869-11475988 asmbl_21608 scaffold_19 - retained_intron 11475869-11475988 asmbl_21607,asmbl_21609 // Retained and Spliced Intron # retained_intron 11482922-11483072 (orient:-) max_ev_support = 3 # spliced_intron 11482922-11483072 (orient:-) max_ev_support = 2 scaffold_19 - intron 11482922-11483072 asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21622,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11482922-11483072 asmbl_21612 // Retained and Spliced Intron # retained_intron 11483212-11483436 (orient:-) max_ev_support = 2 # spliced_intron 11483212-11483436 (orient:-) max_ev_support = 1 scaffold_19 - intron 11483212-11483436 asmbl_21612,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11483212-11483436 asmbl_21615 // Retained and Spliced Intron # retained_intron 11483212-11483614 (orient:-) max_ev_support = 2 # spliced_intron 11483212-11483614 (orient:-) max_ev_support = 2 scaffold_19 - intron 11483212-11483614 asmbl_21614,asmbl_21619 scaffold_19 - retained_intron 11483212-11483614 asmbl_21615 // Retained and Spliced Intron # retained_intron 11483479-11483614 (orient:-) max_ev_support = 2 # spliced_intron 11483479-11483614 (orient:-) max_ev_support = 1 scaffold_19 - intron 11483479-11483614 asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11483479-11483614 asmbl_21615,asmbl_21621 // Retained and Spliced Intron # retained_intron 11483966-11484174 (orient:-) max_ev_support = 2 # spliced_intron 11483966-11484174 (orient:-) max_ev_support = 2 scaffold_19 - intron 11483966-11484174 asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21621,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11483966-11484174 asmbl_21616 // Retained and Spliced Intron # retained_intron 11481673-11481887 (orient:-) max_ev_support = 2 # spliced_intron 11481673-11481887 (orient:-) max_ev_support = 2 scaffold_19 - intron 11481673-11481887 asmbl_21613,asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11481673-11481887 asmbl_21618 // Retained and Spliced Intron # retained_intron 11481997-11482175 (orient:-) max_ev_support = 2 # spliced_intron 11481997-11482175 (orient:-) max_ev_support = 2 scaffold_19 - intron 11481997-11482175 asmbl_21613,asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11481997-11482175 asmbl_21618 // Retained and Spliced Intron # retained_intron 11484684-11484870 (orient:-) max_ev_support = 1 # spliced_intron 11484684-11484870 (orient:-) max_ev_support = 2 scaffold_19 - intron 11484684-11484870 asmbl_21614,asmbl_21615,asmbl_21624 scaffold_19 - retained_intron 11484684-11484870 asmbl_21619,asmbl_21621,asmbl_21623 // Retained and Spliced Intron # retained_intron 11485415-11485915 (orient:-) max_ev_support = 1 # spliced_intron 11485415-11485915 (orient:-) max_ev_support = 2 scaffold_19 - intron 11485415-11485915 asmbl_21614,asmbl_21615,asmbl_21619,asmbl_21621,asmbl_21623,asmbl_21624 scaffold_19 - retained_intron 11485415-11485915 asmbl_21620 // Exon Skipping and Retention # skipped_exon 11483212-11483614 (orient:-) max_ev_support = 2 # retained_exon 11483437-11483478 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 11483437-11483478 asmbl_21623,asmbl_21624 scaffold_19 - intron_skips_exon 11483212-11483614 asmbl_21614,asmbl_21619 // Retained and Spliced Intron # retained_intron 11578071-11578294 (orient:-) max_ev_support = 2 # spliced_intron 11578071-11578294 (orient:-) max_ev_support = 3 scaffold_19 - intron 11578071-11578294 asmbl_21640 scaffold_19 - retained_intron 11578071-11578294 asmbl_21641 // Exon Skipping and Retention # skipped_exon 12079113-12079560 (orient:-) max_ev_support = 1 # retained_exon 12079283-12079387 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 12079283-12079387 asmbl_21660 scaffold_19 - intron_skips_exon 12079113-12079560 asmbl_21661 // Retained and Spliced Intron # retained_intron 12102324-12102615 (orient:-) max_ev_support = 2 # spliced_intron 12102324-12102615 (orient:-) max_ev_support = 2 scaffold_19 - intron 12102324-12102615 asmbl_21665 scaffold_19 - retained_intron 12102324-12102615 asmbl_21666 // Exon Skipping and Retention # skipped_exon 12107159-12107555 (orient:-) max_ev_support = 1 # retained_exon 12107239-12107337 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12107239-12107337 asmbl_21668,asmbl_21669 scaffold_19 - intron_skips_exon 12107159-12107555 asmbl_21674 // Exon Skipping and Retention # skipped_exon 12107338-12107894 (orient:-) max_ev_support = 2 # retained_exon 12107556-12107576 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12107556-12107576 asmbl_21668,asmbl_21674 scaffold_19 - intron_skips_exon 12107338-12107894 asmbl_21669 // Retained and Spliced Intron # retained_intron 12107338-12107555 (orient:-) max_ev_support = 2 # spliced_intron 12107338-12107555 (orient:-) max_ev_support = 2 scaffold_19 - intron 12107338-12107555 asmbl_21668 scaffold_19 - retained_intron 12107338-12107555 asmbl_21670 // Retained and Spliced Intron # retained_intron 12246328-12246698 (orient:-) max_ev_support = 3 # spliced_intron 12246328-12246698 (orient:-) max_ev_support = 3 scaffold_19 - intron 12246328-12246698 asmbl_21681,asmbl_21683,asmbl_21685 scaffold_19 - retained_intron 12246328-12246698 asmbl_21682,asmbl_21684,asmbl_21686 // Retained and Spliced Intron # retained_intron 12247353-12247482 (orient:-) max_ev_support = 2 # spliced_intron 12247353-12247482 (orient:-) max_ev_support = 3 scaffold_19 - intron 12247353-12247482 asmbl_21681,asmbl_21682,asmbl_21685,asmbl_21686 scaffold_19 - retained_intron 12247353-12247482 asmbl_21683,asmbl_21684 // Exon Skipping and Retention # skipped_exon 12393089-12394928 (orient:-) max_ev_support = 1 # retained_exon 12394175-12394258 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12394175-12394258 asmbl_21690,asmbl_21691,asmbl_21692 scaffold_19 - intron_skips_exon 12393089-12394928 asmbl_21693,asmbl_21694 // Exon Skipping and Retention # skipped_exon 12392010-12393051 (orient:-) max_ev_support = 2 # retained_exon 12392290-12392819 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12392290-12392325,12392452-12392550,12392644-12392670,12392754-12392819 asmbl_21691,asmbl_21692,asmbl_21693,asmbl_21694 scaffold_19 - intron_skips_exon 12392010-12393051 asmbl_21690 // Exon Skipping and Retention # skipped_exon 12451053-12451773 (orient:-) max_ev_support = 1 # retained_exon 12451454-12451603 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 12451454-12451603 asmbl_21697 scaffold_19 - intron_skips_exon 12451053-12451773 asmbl_21698 // Retained and Spliced Intron # retained_intron 12482434-12483861 (orient:-) max_ev_support = 4 # spliced_intron 12482434-12483861 (orient:-) max_ev_support = 2 scaffold_19 - intron 12482434-12483861 asmbl_21710 scaffold_19 - retained_intron 12482434-12483861 asmbl_21709 // Retained and Spliced Intron # retained_intron 12487325-12488732 (orient:-) max_ev_support = 4 # spliced_intron 12487325-12488732 (orient:-) max_ev_support = 1 scaffold_19 - intron 12487325-12488732 asmbl_21714 scaffold_19 - retained_intron 12487325-12488732 asmbl_21711 // Retained and Spliced Intron # retained_intron 12574951-12575303 (orient:-) max_ev_support = 1 # spliced_intron 12574951-12575303 (orient:-) max_ev_support = 1 scaffold_19 - intron 12574951-12575303 asmbl_21731 scaffold_19 - retained_intron 12574951-12575303 asmbl_21730 // Retained and Spliced Intron # retained_intron 12574951-12575421 (orient:-) max_ev_support = 1 # spliced_intron 12574951-12575421 (orient:-) max_ev_support = 2 scaffold_19 - intron 12574951-12575421 asmbl_21729,asmbl_21732 scaffold_19 - retained_intron 12574951-12575421 asmbl_21730 // Retained and Spliced Intron # retained_intron 12686175-12686347 (orient:-) max_ev_support = 1 # spliced_intron 12686175-12686347 (orient:-) max_ev_support = 2 scaffold_19 - intron 12686175-12686347 asmbl_21738,asmbl_21739,asmbl_21741 scaffold_19 - retained_intron 12686175-12686347 asmbl_21740 // Retained and Spliced Intron # retained_intron 12700478-12700502 (orient:-) max_ev_support = 2 # spliced_intron 12700478-12700502 (orient:-) max_ev_support = 1 scaffold_19 - intron 12700478-12700502 asmbl_21743 scaffold_19 - retained_intron 12700478-12700502 asmbl_21742 // Retained and Spliced Intron # retained_intron 12819130-12819507 (orient:-) max_ev_support = 4 # spliced_intron 12819130-12819507 (orient:-) max_ev_support = 2 scaffold_19 - intron 12819130-12819507 asmbl_21759,asmbl_21760,asmbl_21764,asmbl_21765 scaffold_19 - retained_intron 12819130-12819507 asmbl_21756,asmbl_21757,asmbl_21758 // Retained and Spliced Intron # retained_intron 12821262-12821857 (orient:-) max_ev_support = 2 # spliced_intron 12821262-12821857 (orient:-) max_ev_support = 2 scaffold_19 - intron 12821262-12821857 asmbl_21757,asmbl_21759,asmbl_21760 scaffold_19 - retained_intron 12821262-12821857 asmbl_21756,asmbl_21758,asmbl_21764,asmbl_21765 // Retained and Spliced Intron # retained_intron 12822372-12822631 (orient:-) max_ev_support = 1 # spliced_intron 12822372-12822631 (orient:-) max_ev_support = 1 scaffold_19 - intron 12822372-12822631 asmbl_21765 scaffold_19 - retained_intron 12822372-12822631 asmbl_21758 // Retained and Spliced Intron # retained_intron 12822377-12822631 (orient:-) max_ev_support = 1 # spliced_intron 12822377-12822631 (orient:-) max_ev_support = 2 scaffold_19 - intron 12822377-12822631 asmbl_21756,asmbl_21757,asmbl_21759,asmbl_21760,asmbl_21764 scaffold_19 - retained_intron 12822377-12822631 asmbl_21758 // Retained and Spliced Intron # retained_intron 12822074-12822167 (orient:-) max_ev_support = 1 # spliced_intron 12822074-12822167 (orient:-) max_ev_support = 2 scaffold_19 - intron 12822074-12822167 asmbl_21756,asmbl_21757,asmbl_21758,asmbl_21760,asmbl_21764,asmbl_21765 scaffold_19 - retained_intron 12822074-12822167 asmbl_21759 // Exon Skipping and Retention # skipped_exon 12956159-12956739 (orient:-) max_ev_support = 2 # retained_exon 12956212-12956267 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 12956212-12956267 asmbl_21775,asmbl_21776,asmbl_21777,asmbl_21779 scaffold_19 - intron_skips_exon 12956159-12956739 asmbl_21778 // Retained and Spliced Intron # retained_intron 12958865-12958948 (orient:-) max_ev_support = 2 # spliced_intron 12958865-12958948 (orient:-) max_ev_support = 2 scaffold_19 - intron 12958865-12958948 asmbl_21775,asmbl_21779 scaffold_19 - retained_intron 12958865-12958948 asmbl_21777 // Exon Skipping and Retention # skipped_exon 12957723-12958376 (orient:-) max_ev_support = 2 # retained_exon 12958036-12958121 (orient:-) max_ev_support = 1 scaffold_19 - retained_exons 12958036-12958121 asmbl_21779 scaffold_19 - intron_skips_exon 12957723-12958376 asmbl_21775,asmbl_21777 // Retained and Spliced Intron # retained_intron 12971908-12971989 (orient:-) max_ev_support = 3 # spliced_intron 12971908-12971989 (orient:-) max_ev_support = 2 scaffold_19 - intron 12971908-12971989 asmbl_21790,asmbl_21791,asmbl_21792 scaffold_19 - retained_intron 12971908-12971989 asmbl_21784,asmbl_21785,asmbl_21786,asmbl_21787,asmbl_21788,asmbl_21789 // Retained and Spliced Intron # retained_intron 12972587-12972817 (orient:-) max_ev_support = 3 # spliced_intron 12972587-12972817 (orient:-) max_ev_support = 3 scaffold_19 - intron 12972587-12972817 asmbl_21785,asmbl_21789,asmbl_21791 scaffold_19 - retained_intron 12972587-12972817 asmbl_21784,asmbl_21786 // Retained and Spliced Intron # retained_intron 12972587-12973050 (orient:-) max_ev_support = 3 # spliced_intron 12972587-12973050 (orient:-) max_ev_support = 3 scaffold_19 - intron 12972587-12973050 asmbl_21787,asmbl_21788,asmbl_21790,asmbl_21792 scaffold_19 - retained_intron 12972587-12973050 asmbl_21784 // Retained and Spliced Intron # retained_intron 12972869-12973050 (orient:-) max_ev_support = 1 # spliced_intron 12972869-12973050 (orient:-) max_ev_support = 3 scaffold_19 - intron 12972869-12973050 asmbl_21785,asmbl_21786,asmbl_21789,asmbl_21791 scaffold_19 - retained_intron 12972869-12973050 asmbl_21784 // Exon Skipping and Retention # skipped_exon 12972587-12973050 (orient:-) max_ev_support = 3 # retained_exon 12972818-12972868 (orient:-) max_ev_support = 3 scaffold_19 - retained_exons 12972818-12972868 asmbl_21785,asmbl_21789,asmbl_21791 scaffold_19 - intron_skips_exon 12972587-12973050 asmbl_21787,asmbl_21788,asmbl_21790,asmbl_21792 // Retained and Spliced Intron # retained_intron 13010263-13010705 (orient:-) max_ev_support = 2 # spliced_intron 13010263-13010705 (orient:-) max_ev_support = 2 scaffold_19 - intron 13010263-13010705 asmbl_21794,asmbl_21797,asmbl_21798,asmbl_21799,asmbl_21800,asmbl_21801 scaffold_19 - retained_intron 13010263-13010705 asmbl_21795 // Retained and Spliced Intron # retained_intron 13010845-13011231 (orient:-) max_ev_support = 1 # spliced_intron 13010845-13011231 (orient:-) max_ev_support = 2 scaffold_19 - intron 13010845-13011231 asmbl_21794,asmbl_21799,asmbl_21800 scaffold_19 - retained_intron 13010845-13011231 asmbl_21797,asmbl_21798,asmbl_21801 // Retained and Spliced Intron # retained_intron 13011394-13011749 (orient:-) max_ev_support = 1 # spliced_intron 13011394-13011749 (orient:-) max_ev_support = 2 scaffold_19 - intron 13011394-13011749 asmbl_21794,asmbl_21797,asmbl_21798,asmbl_21800 scaffold_19 - retained_intron 13011394-13011749 asmbl_21799 // Retained and Spliced Intron # retained_intron 13029049-13029345 (orient:-) max_ev_support = 2 # spliced_intron 13029049-13029345 (orient:-) max_ev_support = 3 scaffold_19 - intron 13029049-13029345 asmbl_21803,asmbl_21804 scaffold_19 - retained_intron 13029049-13029345 asmbl_21805 // Retained and Spliced Intron # retained_intron 13102708-13103005 (orient:-) max_ev_support = 2 # spliced_intron 13102708-13103005 (orient:-) max_ev_support = 3 scaffold_19 - intron 13102708-13103005 asmbl_21813 scaffold_19 - retained_intron 13102708-13103005 asmbl_21814 // Retained and Spliced Intron # retained_intron 13155142-13155525 (orient:-) max_ev_support = 2 # spliced_intron 13155142-13155525 (orient:-) max_ev_support = 1 scaffold_19 - intron 13155142-13155525 asmbl_21825 scaffold_19 - retained_intron 13155142-13155525 asmbl_21823,asmbl_21824 // Retained and Spliced Intron # retained_intron 13154957-13155027 (orient:-) max_ev_support = 1 # spliced_intron 13154957-13155027 (orient:-) max_ev_support = 2 scaffold_19 - intron 13154957-13155027 asmbl_21823 scaffold_19 - retained_intron 13154957-13155027 asmbl_21824,asmbl_21825 // Retained and Spliced Intron # retained_intron 13155009-13155525 (orient:-) max_ev_support = 1 # spliced_intron 13155009-13155525 (orient:-) max_ev_support = 2 scaffold_19 - intron 13155009-13155525 asmbl_21822 scaffold_19 - retained_intron 13155009-13155525 asmbl_21824 // Retained and Spliced Intron # retained_intron 13215875-13216174 (orient:-) max_ev_support = 3 # spliced_intron 13215875-13216174 (orient:-) max_ev_support = 2 scaffold_19 - intron 13215875-13216174 asmbl_21833 scaffold_19 - retained_intron 13215875-13216174 asmbl_21826,asmbl_21834,asmbl_21835 // Exon Skipping and Retention # skipped_exon 13192750-13193059 (orient:-) max_ev_support = 1 # retained_exon 13192899-13192924 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13192899-13192924 asmbl_21827,asmbl_21837,asmbl_21839,asmbl_21840,asmbl_21841,asmbl_21842,asmbl_21843,asmbl_21845 scaffold_19 - intron_skips_exon 13192750-13193059 asmbl_21844 // Exon Skipping and Retention # skipped_exon 13194590-13195671 (orient:-) max_ev_support = 1 # retained_exon 13195098-13195163 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13195098-13195163 asmbl_21827,asmbl_21839,asmbl_21841,asmbl_21843,asmbl_21845 scaffold_19 - intron_skips_exon 13194590-13195671 asmbl_21840,asmbl_21842 // Exon Skipping and Retention # skipped_exon 13211934-13213021 (orient:-) max_ev_support = 1 # retained_exon 13212154-13212329 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13212154-13212329 asmbl_21827,asmbl_21840,asmbl_21841,asmbl_21842,asmbl_21843,asmbl_21845 scaffold_19 - intron_skips_exon 13211934-13213021 asmbl_21839 // Exon Skipping and Retention # skipped_exon 13233310-13234904 (orient:-) max_ev_support = 2 # retained_exon 13233721-13233855 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13233721-13233855 asmbl_21827 scaffold_19 - intron_skips_exon 13233310-13234904 asmbl_21826 // Retained and Spliced Intron # retained_intron 13236971-13237060 (orient:-) max_ev_support = 2 # spliced_intron 13236971-13237060 (orient:-) max_ev_support = 2 scaffold_19 - intron 13236971-13237060 asmbl_21826,asmbl_21827,asmbl_21831 scaffold_19 - retained_intron 13236971-13237060 asmbl_21832 // Retained and Spliced Intron # retained_intron 13220754-13221798 (orient:-) max_ev_support = 2 # spliced_intron 13220754-13221798 (orient:-) max_ev_support = 3 scaffold_19 - intron 13220754-13221798 asmbl_21826,asmbl_21827,asmbl_21842,asmbl_21845 scaffold_19 - retained_intron 13220754-13221798 asmbl_21834,asmbl_21843 // Exon Skipping and Retention # skipped_exon 13195164-13195671 (orient:-) max_ev_support = 2 # retained_exon 13195378-13195451 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13195378-13195451 asmbl_21837 scaffold_19 - intron_skips_exon 13195164-13195671 asmbl_21827,asmbl_21839,asmbl_21841,asmbl_21843,asmbl_21845 // Retained and Spliced Intron # retained_intron 13224244-13224327 (orient:-) max_ev_support = 1 # spliced_intron 13224244-13224327 (orient:-) max_ev_support = 3 scaffold_19 - intron 13224244-13224327 asmbl_21826,asmbl_21827,asmbl_21834,asmbl_21842,asmbl_21843 scaffold_19 - retained_intron 13224244-13224327 asmbl_21845 // Retained and Spliced Intron # retained_intron 13254452-13254529 (orient:-) max_ev_support = 3 # spliced_intron 13254452-13254529 (orient:-) max_ev_support = 1 scaffold_19 - intron 13254452-13254529 asmbl_21848 scaffold_19 - retained_intron 13254452-13254529 asmbl_21847 // Exon Skipping and Retention # skipped_exon 13262428-13262871 (orient:-) max_ev_support = 1 # retained_exon 13262630-13262802 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13262630-13262802 asmbl_21851,asmbl_21852 scaffold_19 - intron_skips_exon 13262428-13262871 asmbl_21854 // Retained and Spliced Intron # retained_intron 13266345-13266432 (orient:-) max_ev_support = 1 # spliced_intron 13266345-13266432 (orient:-) max_ev_support = 2 scaffold_19 - intron 13266345-13266432 asmbl_21855 scaffold_19 - retained_intron 13266345-13266432 asmbl_21856 // Exon Skipping and Retention # skipped_exon 13267387-13268218 (orient:-) max_ev_support = 2 # retained_exon 13268055-13268107 (orient:-) max_ev_support = 2 scaffold_19 - retained_exons 13268055-13268107 asmbl_21857 scaffold_19 - intron_skips_exon 13267387-13268218 asmbl_21858 // Retained and Spliced Intron # retained_intron 13637265-13638466 (orient:-) max_ev_support = 4 # spliced_intron 13637265-13638466 (orient:-) max_ev_support = 1 scaffold_19 - intron 13637265-13638466 asmbl_21889 scaffold_19 - retained_intron 13637265-13638466 asmbl_21888 // Retained and Spliced Intron # retained_intron 8526-8631 (orient:+) max_ev_support = 1 # spliced_intron 8526-8631 (orient:+) max_ev_support = 1 scaffold_19 + intron 8526-8631 asmbl_21971 scaffold_19 + retained_intron 8526-8631 asmbl_21970 // Retained and Spliced Intron # retained_intron 30998-31076 (orient:+) max_ev_support = 2 # spliced_intron 30998-31076 (orient:+) max_ev_support = 3 scaffold_19 + intron 30998-31076 asmbl_21972 scaffold_19 + retained_intron 30998-31076 asmbl_21973 // Retained and Spliced Intron # retained_intron 678886-678963 (orient:+) max_ev_support = 2 # spliced_intron 678886-678963 (orient:+) max_ev_support = 2 scaffold_19 + intron 678886-678963 asmbl_22000 scaffold_19 + retained_intron 678886-678963 asmbl_22002 // Retained and Spliced Intron # retained_intron 678886-678974 (orient:+) max_ev_support = 2 # spliced_intron 678886-678974 (orient:+) max_ev_support = 1 scaffold_19 + intron 678886-678974 asmbl_22003 scaffold_19 + retained_intron 678886-678974 asmbl_22002 // Retained and Spliced Intron # retained_intron 810594-810631 (orient:+) max_ev_support = 1 # spliced_intron 810594-810631 (orient:+) max_ev_support = 1 scaffold_19 + intron 810594-810631 asmbl_22013 scaffold_19 + retained_intron 810594-810631 asmbl_22012 // Exon Skipping and Retention # skipped_exon 857538-858547 (orient:+) max_ev_support = 2 # retained_exon 857705-858188 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 857705-857861,857988-858188 asmbl_22020 scaffold_19 + intron_skips_exon 857538-858547 asmbl_22019,asmbl_22022 // Exon Skipping and Retention # skipped_exon 857538-858547 (orient:+) max_ev_support = 2 # retained_exon 857705-858401 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 857705-857861,857988-858401 asmbl_22021 scaffold_19 + intron_skips_exon 857538-858547 asmbl_22019,asmbl_22022 // Retained and Spliced Intron # retained_intron 1504585-1504605 (orient:+) max_ev_support = 1 # spliced_intron 1504585-1504605 (orient:+) max_ev_support = 1 scaffold_19 + intron 1504585-1504605 asmbl_22046 scaffold_19 + retained_intron 1504585-1504605 asmbl_22044,asmbl_22045 // Retained and Spliced Intron # retained_intron 2348182-2348361 (orient:+) max_ev_support = 2 # spliced_intron 2348182-2348361 (orient:+) max_ev_support = 2 scaffold_19 + intron 2348182-2348361 asmbl_22061 scaffold_19 + retained_intron 2348182-2348361 asmbl_22062 // Retained and Spliced Intron # retained_intron 2649578-2649708 (orient:+) max_ev_support = 1 # spliced_intron 2649578-2649708 (orient:+) max_ev_support = 2 scaffold_19 + intron 2649578-2649708 asmbl_22065 scaffold_19 + retained_intron 2649578-2649708 asmbl_22069 // Retained and Spliced Intron # retained_intron 2696720-2696863 (orient:+) max_ev_support = 1 # spliced_intron 2696720-2696863 (orient:+) max_ev_support = 1 scaffold_19 + intron 2696720-2696863 asmbl_22073 scaffold_19 + retained_intron 2696720-2696863 asmbl_22072 // Retained and Spliced Intron # retained_intron 2780819-2780920 (orient:+) max_ev_support = 2 # spliced_intron 2780819-2780920 (orient:+) max_ev_support = 1 scaffold_19 + intron 2780819-2780920 asmbl_22077,asmbl_22080,asmbl_22082 scaffold_19 + retained_intron 2780819-2780920 asmbl_22076,asmbl_22079,asmbl_22081 // Exon Skipping and Retention # skipped_exon 2780544-2780920 (orient:+) max_ev_support = 1 # retained_exon 2780749-2780818 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 2780749-2780818 asmbl_22077,asmbl_22080 scaffold_19 + intron_skips_exon 2780544-2780920 asmbl_22078 // Retained and Spliced Intron # retained_intron 2781526-2781716 (orient:+) max_ev_support = 1 # spliced_intron 2781526-2781716 (orient:+) max_ev_support = 1 scaffold_19 + intron 2781526-2781716 asmbl_22076,asmbl_22077,asmbl_22078,asmbl_22081,asmbl_22082 scaffold_19 + retained_intron 2781526-2781716 asmbl_22080 // Retained and Spliced Intron # retained_intron 2917569-2917600 (orient:+) max_ev_support = 1 # spliced_intron 2917569-2917600 (orient:+) max_ev_support = 1 scaffold_19 + intron 2917569-2917600 asmbl_22091 scaffold_19 + retained_intron 2917569-2917600 asmbl_22092 // Retained and Spliced Intron # retained_intron 3207630-3207699 (orient:+) max_ev_support = 2 # spliced_intron 3207630-3207699 (orient:+) max_ev_support = 2 scaffold_19 + intron 3207630-3207699 asmbl_22110 scaffold_19 + retained_intron 3207630-3207699 asmbl_22109 // Retained and Spliced Intron # retained_intron 3516757-3516831 (orient:+) max_ev_support = 1 # spliced_intron 3516757-3516831 (orient:+) max_ev_support = 1 scaffold_19 + intron 3516757-3516831 asmbl_22122 scaffold_19 + retained_intron 3516757-3516831 asmbl_22121 // Exon Skipping and Retention # skipped_exon 3557450-3558114 (orient:+) max_ev_support = 1 # retained_exon 3557631-3557817 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3557631-3557817 asmbl_22125,asmbl_22126,asmbl_22127,asmbl_22128 scaffold_19 + intron_skips_exon 3557450-3558114 asmbl_22130 // Retained and Spliced Intron # retained_intron 3559309-3561160 (orient:+) max_ev_support = 7 # spliced_intron 3559309-3561160 (orient:+) max_ev_support = 1 scaffold_19 + intron 3559309-3561160 asmbl_22130 scaffold_19 + retained_intron 3559309-3561160 asmbl_22125,asmbl_22126,asmbl_22127 // Retained and Spliced Intron # retained_intron 3560904-3561075 (orient:+) max_ev_support = 5 # spliced_intron 3560904-3561075 (orient:+) max_ev_support = 1 scaffold_19 + intron 3560904-3561075 asmbl_22128 scaffold_19 + retained_intron 3560904-3561075 asmbl_22125,asmbl_22126,asmbl_22127 // Retained and Spliced Intron # retained_intron 3683526-3683854 (orient:+) max_ev_support = 2 # spliced_intron 3683526-3683854 (orient:+) max_ev_support = 1 scaffold_19 + intron 3683526-3683854 asmbl_22134,asmbl_22136,asmbl_22137 scaffold_19 + retained_intron 3683526-3683854 asmbl_22131,asmbl_22138 // Retained and Spliced Intron # retained_intron 3684557-3684940 (orient:+) max_ev_support = 2 # spliced_intron 3684557-3684940 (orient:+) max_ev_support = 1 scaffold_19 + intron 3684557-3684940 asmbl_22133,asmbl_22134,asmbl_22135,asmbl_22138 scaffold_19 + retained_intron 3684557-3684940 asmbl_22131 // Exon Skipping and Retention # skipped_exon 3682622-3683432 (orient:+) max_ev_support = 1 # retained_exon 3683036-3683128 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3683036-3683128 asmbl_22132,asmbl_22133,asmbl_22135 scaffold_19 + intron_skips_exon 3682622-3683432 asmbl_22134,asmbl_22136 // Exon Skipping and Retention # skipped_exon 3684104-3684940 (orient:+) max_ev_support = 1 # retained_exon 3684358-3684556 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3684358-3684556 asmbl_22133,asmbl_22134,asmbl_22135,asmbl_22138 scaffold_19 + intron_skips_exon 3684104-3684940 asmbl_22132,asmbl_22136,asmbl_22137 // Exon Skipping and Retention # skipped_exon 3683129-3683854 (orient:+) max_ev_support = 1 # retained_exon 3683433-3683525 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 3683433-3683525 asmbl_22134,asmbl_22136 scaffold_19 + intron_skips_exon 3683129-3683854 asmbl_22132,asmbl_22133,asmbl_22135 // Retained and Spliced Intron # retained_intron 5155129-5155211 (orient:+) max_ev_support = 2 # spliced_intron 5155129-5155211 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155129-5155211 asmbl_22158,asmbl_22159 scaffold_19 + retained_intron 5155129-5155211 asmbl_22156,asmbl_22157,asmbl_22160 // Retained and Spliced Intron # retained_intron 5155289-5155500 (orient:+) max_ev_support = 1 # spliced_intron 5155289-5155500 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155289-5155500 asmbl_22157 scaffold_19 + retained_intron 5155289-5155500 asmbl_22159,asmbl_22160 // Retained and Spliced Intron # retained_intron 5155289-5155678 (orient:+) max_ev_support = 1 # spliced_intron 5155289-5155678 (orient:+) max_ev_support = 2 scaffold_19 + intron 5155289-5155678 asmbl_22156,asmbl_22158 scaffold_19 + retained_intron 5155289-5155678 asmbl_22159,asmbl_22160 // Retained and Spliced Intron # retained_intron 5197616-5197930 (orient:+) max_ev_support = 2 # spliced_intron 5197616-5197930 (orient:+) max_ev_support = 2 scaffold_19 + intron 5197616-5197930 asmbl_22165 scaffold_19 + retained_intron 5197616-5197930 asmbl_22164 // Exon Skipping and Retention # skipped_exon 5372937-5373632 (orient:+) max_ev_support = 1 # retained_exon 5373273-5373362 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 5373273-5373362 asmbl_22171 scaffold_19 + intron_skips_exon 5372937-5373632 asmbl_22172 // Retained and Spliced Intron # retained_intron 5461618-5461705 (orient:+) max_ev_support = 2 # spliced_intron 5461618-5461705 (orient:+) max_ev_support = 1 scaffold_19 + intron 5461618-5461705 asmbl_22179 scaffold_19 + retained_intron 5461618-5461705 asmbl_22176 // Retained and Spliced Intron # retained_intron 5463673-5463985 (orient:+) max_ev_support = 2 # spliced_intron 5463673-5463985 (orient:+) max_ev_support = 2 scaffold_19 + intron 5463673-5463985 asmbl_22175,asmbl_22179 scaffold_19 + retained_intron 5463673-5463985 asmbl_22178 // Exon Skipping and Retention # skipped_exon 5461618-5462863 (orient:+) max_ev_support = 2 # retained_exon 5461706-5461769 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 5461706-5461769 asmbl_22179 scaffold_19 + intron_skips_exon 5461618-5462863 asmbl_22175,asmbl_22178 // Retained and Spliced Intron # retained_intron 5464093-5464178 (orient:+) max_ev_support = 1 # spliced_intron 5464093-5464178 (orient:+) max_ev_support = 2 scaffold_19 + intron 5464093-5464178 asmbl_22175,asmbl_22178,asmbl_22179 scaffold_19 + retained_intron 5464093-5464178 asmbl_22180 // Retained and Spliced Intron # retained_intron 5594710-5594731 (orient:+) max_ev_support = 2 # spliced_intron 5594710-5594731 (orient:+) max_ev_support = 1 scaffold_19 + intron 5594710-5594731 asmbl_22186 scaffold_19 + retained_intron 5594710-5594731 asmbl_22185 // Exon Skipping and Retention # skipped_exon 5626384-5626719 (orient:+) max_ev_support = 1 # retained_exon 5626483-5626591 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 5626483-5626591 asmbl_22187 scaffold_19 + intron_skips_exon 5626384-5626719 asmbl_22188 // Retained and Spliced Intron # retained_intron 6213363-6213463 (orient:+) max_ev_support = 3 # spliced_intron 6213363-6213463 (orient:+) max_ev_support = 2 scaffold_19 + intron 6213363-6213463 asmbl_22203 scaffold_19 + retained_intron 6213363-6213463 asmbl_22201 // Retained and Spliced Intron # retained_intron 6213363-6213529 (orient:+) max_ev_support = 3 # spliced_intron 6213363-6213529 (orient:+) max_ev_support = 2 scaffold_19 + intron 6213363-6213529 asmbl_22202,asmbl_22204 scaffold_19 + retained_intron 6213363-6213529 asmbl_22201 // Exon Skipping and Retention # skipped_exon 6255614-6257998 (orient:+) max_ev_support = 1 # retained_exon 6257255-6257617 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 6257255-6257360,6257467-6257617 asmbl_22206 scaffold_19 + intron_skips_exon 6255614-6257998 asmbl_22207 // Retained and Spliced Intron # retained_intron 6669350-6669595 (orient:+) max_ev_support = 2 # spliced_intron 6669350-6669595 (orient:+) max_ev_support = 1 scaffold_19 + intron 6669350-6669595 asmbl_22230 scaffold_19 + retained_intron 6669350-6669595 asmbl_22228,asmbl_22231 // Retained and Spliced Intron # retained_intron 6669350-6669598 (orient:+) max_ev_support = 2 # spliced_intron 6669350-6669598 (orient:+) max_ev_support = 2 scaffold_19 + intron 6669350-6669598 asmbl_22229 scaffold_19 + retained_intron 6669350-6669598 asmbl_22228,asmbl_22231 // Retained and Spliced Intron # retained_intron 7364545-7364696 (orient:+) max_ev_support = 2 # spliced_intron 7364545-7364696 (orient:+) max_ev_support = 2 scaffold_19 + intron 7364545-7364696 asmbl_22255 scaffold_19 + retained_intron 7364545-7364696 asmbl_22254 // Retained and Spliced Intron # retained_intron 7466932-7467251 (orient:+) max_ev_support = 2 # spliced_intron 7466932-7467251 (orient:+) max_ev_support = 2 scaffold_19 + intron 7466932-7467251 asmbl_22261 scaffold_19 + retained_intron 7466932-7467251 asmbl_22262 // Retained and Spliced Intron # retained_intron 7701981-7702197 (orient:+) max_ev_support = 1 # spliced_intron 7701981-7702197 (orient:+) max_ev_support = 2 scaffold_19 + intron 7701981-7702197 asmbl_22293,asmbl_22295 scaffold_19 + retained_intron 7701981-7702197 asmbl_22296,asmbl_22297 // Retained and Spliced Intron # retained_intron 7702234-7702855 (orient:+) max_ev_support = 1 # spliced_intron 7702234-7702855 (orient:+) max_ev_support = 2 scaffold_19 + intron 7702234-7702855 asmbl_22293,asmbl_22295,asmbl_22297 scaffold_19 + retained_intron 7702234-7702855 asmbl_22296 // Exon Skipping and Retention # skipped_exon 8180860-8182966 (orient:+) max_ev_support = 1 # retained_exon 8182278-8182286 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 8182278-8182286 asmbl_22303 scaffold_19 + intron_skips_exon 8180860-8182966 asmbl_22302 // Retained and Spliced Intron # retained_intron 8232992-8233161 (orient:+) max_ev_support = 1 # spliced_intron 8232992-8233161 (orient:+) max_ev_support = 2 scaffold_19 + intron 8232992-8233161 asmbl_22307 scaffold_19 + retained_intron 8232992-8233161 asmbl_22309 // Retained and Spliced Intron # retained_intron 8258058-8258133 (orient:+) max_ev_support = 1 # spliced_intron 8258058-8258133 (orient:+) max_ev_support = 2 scaffold_19 + intron 8258058-8258133 asmbl_22311 scaffold_19 + retained_intron 8258058-8258133 asmbl_22312 // Retained and Spliced Intron # retained_intron 8263705-8263839 (orient:+) max_ev_support = 3 # spliced_intron 8263705-8263839 (orient:+) max_ev_support = 1 scaffold_19 + intron 8263705-8263839 asmbl_22314 scaffold_19 + retained_intron 8263705-8263839 asmbl_22313 // Retained and Spliced Intron # retained_intron 8755862-8756122 (orient:+) max_ev_support = 1 # spliced_intron 8755862-8756122 (orient:+) max_ev_support = 2 scaffold_19 + intron 8755862-8756122 asmbl_22352 scaffold_19 + retained_intron 8755862-8756122 asmbl_22353,asmbl_22354 // Retained and Spliced Intron # retained_intron 8753361-8753725 (orient:+) max_ev_support = 1 # spliced_intron 8753361-8753725 (orient:+) max_ev_support = 1 scaffold_19 + intron 8753361-8753725 asmbl_22353 scaffold_19 + retained_intron 8753361-8753725 asmbl_22354 // Retained and Spliced Intron # retained_intron 8753361-8753752 (orient:+) max_ev_support = 1 # spliced_intron 8753361-8753752 (orient:+) max_ev_support = 2 scaffold_19 + intron 8753361-8753752 asmbl_22352 scaffold_19 + retained_intron 8753361-8753752 asmbl_22354 // Retained and Spliced Intron # retained_intron 8753871-8754300 (orient:+) max_ev_support = 1 # spliced_intron 8753871-8754300 (orient:+) max_ev_support = 2 scaffold_19 + intron 8753871-8754300 asmbl_22352,asmbl_22353 scaffold_19 + retained_intron 8753871-8754300 asmbl_22354 // Retained and Spliced Intron # retained_intron 8805742-8805817 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805817 (orient:+) max_ev_support = 1 scaffold_19 + intron 8805742-8805817 asmbl_22360 scaffold_19 + retained_intron 8805742-8805817 asmbl_22361 // Retained and Spliced Intron # retained_intron 8805742-8805841 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805841 (orient:+) max_ev_support = 2 scaffold_19 + intron 8805742-8805841 asmbl_22358 scaffold_19 + retained_intron 8805742-8805841 asmbl_22361 // Retained and Spliced Intron # retained_intron 8805742-8805900 (orient:+) max_ev_support = 1 # spliced_intron 8805742-8805900 (orient:+) max_ev_support = 1 scaffold_19 + intron 8805742-8805900 asmbl_22359 scaffold_19 + retained_intron 8805742-8805900 asmbl_22361 // Exon Skipping and Retention # skipped_exon 9096219-9098178 (orient:+) max_ev_support = 2 # retained_exon 9097972-9098075 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 9097972-9098075 asmbl_22373 scaffold_19 + intron_skips_exon 9096219-9098178 asmbl_22372 // Retained and Spliced Intron # retained_intron 9456754-9457176 (orient:+) max_ev_support = 3 # spliced_intron 9456754-9457176 (orient:+) max_ev_support = 2 scaffold_19 + intron 9456754-9457176 asmbl_22395 scaffold_19 + retained_intron 9456754-9457176 asmbl_22394 // Exon Skipping and Retention # skipped_exon 9453805-9454559 (orient:+) max_ev_support = 2 # retained_exon 9454023-9454055 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 9454023-9454055 asmbl_22396 scaffold_19 + intron_skips_exon 9453805-9454559 asmbl_22397,asmbl_22398 // Retained and Spliced Intron # retained_intron 9521510-9521794 (orient:+) max_ev_support = 2 # spliced_intron 9521510-9521794 (orient:+) max_ev_support = 1 scaffold_19 + intron 9521510-9521794 asmbl_22410 scaffold_19 + retained_intron 9521510-9521794 asmbl_22409 // Retained and Spliced Intron # retained_intron 9534078-9534340 (orient:+) max_ev_support = 2 # spliced_intron 9534078-9534340 (orient:+) max_ev_support = 2 scaffold_19 + intron 9534078-9534340 asmbl_22413 scaffold_19 + retained_intron 9534078-9534340 asmbl_22412 // Retained and Spliced Intron # retained_intron 10121648-10121867 (orient:+) max_ev_support = 2 # spliced_intron 10121648-10121867 (orient:+) max_ev_support = 2 scaffold_19 + intron 10121648-10121867 asmbl_22422 scaffold_19 + retained_intron 10121648-10121867 asmbl_22424 // Exon Skipping and Retention # skipped_exon 10204950-10206951 (orient:+) max_ev_support = 2 # retained_exon 10205501-10205553 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 10205501-10205553 asmbl_22429 scaffold_19 + intron_skips_exon 10204950-10206951 asmbl_22428 // Exon Skipping and Retention # skipped_exon 10222451-10224393 (orient:+) max_ev_support = 1 # retained_exon 10223580-10223646 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 10223580-10223646 asmbl_22431,asmbl_22432,asmbl_22435 scaffold_19 + intron_skips_exon 10222451-10224393 asmbl_22436 // Exon Skipping and Retention # skipped_exon 10221442-10223579 (orient:+) max_ev_support = 2 # retained_exon 10222384-10222450 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 10222384-10222450 asmbl_22435,asmbl_22436 scaffold_19 + intron_skips_exon 10221442-10223579 asmbl_22431 // Retained and Spliced Intron # retained_intron 10302844-10303671 (orient:+) max_ev_support = 1 # spliced_intron 10302844-10303671 (orient:+) max_ev_support = 3 scaffold_19 + intron 10302844-10303671 asmbl_22448 scaffold_19 + retained_intron 10302844-10303671 asmbl_22450,asmbl_22451 // Retained and Spliced Intron # retained_intron 10303465-10303671 (orient:+) max_ev_support = 1 # spliced_intron 10303465-10303671 (orient:+) max_ev_support = 2 scaffold_19 + intron 10303465-10303671 asmbl_22449 scaffold_19 + retained_intron 10303465-10303671 asmbl_22450,asmbl_22451 // Retained and Spliced Intron # retained_intron 10791584-10791697 (orient:+) max_ev_support = 3 # spliced_intron 10791584-10791697 (orient:+) max_ev_support = 1 scaffold_19 + intron 10791584-10791697 asmbl_22460 scaffold_19 + retained_intron 10791584-10791697 asmbl_22459 // Retained and Spliced Intron # retained_intron 10820688-10821270 (orient:+) max_ev_support = 1 # spliced_intron 10820688-10821270 (orient:+) max_ev_support = 3 scaffold_19 + intron 10820688-10821270 asmbl_22464 scaffold_19 + retained_intron 10820688-10821270 asmbl_22466,asmbl_22467 // Retained and Spliced Intron # retained_intron 10821455-10821556 (orient:+) max_ev_support = 1 # spliced_intron 10821455-10821556 (orient:+) max_ev_support = 3 scaffold_19 + intron 10821455-10821556 asmbl_22464,asmbl_22466 scaffold_19 + retained_intron 10821455-10821556 asmbl_22467 // Retained and Spliced Intron # retained_intron 11168462-11168662 (orient:+) max_ev_support = 1 # spliced_intron 11168462-11168662 (orient:+) max_ev_support = 2 scaffold_19 + intron 11168462-11168662 asmbl_22474,asmbl_22476,asmbl_22477 scaffold_19 + retained_intron 11168462-11168662 asmbl_22475 // Retained and Spliced Intron # retained_intron 11168790-11168935 (orient:+) max_ev_support = 1 # spliced_intron 11168790-11168935 (orient:+) max_ev_support = 2 scaffold_19 + intron 11168790-11168935 asmbl_22474 scaffold_19 + retained_intron 11168790-11168935 asmbl_22475,asmbl_22477 // Retained and Spliced Intron # retained_intron 11168790-11168939 (orient:+) max_ev_support = 1 # spliced_intron 11168790-11168939 (orient:+) max_ev_support = 1 scaffold_19 + intron 11168790-11168939 asmbl_22476 scaffold_19 + retained_intron 11168790-11168939 asmbl_22475,asmbl_22477 // Retained and Spliced Intron # retained_intron 11489772-11489947 (orient:+) max_ev_support = 2 # spliced_intron 11489772-11489947 (orient:+) max_ev_support = 3 scaffold_19 + intron 11489772-11489947 asmbl_22506,asmbl_22513 scaffold_19 + retained_intron 11489772-11489947 asmbl_22509 // Exon Skipping and Retention # skipped_exon 11779419-11780572 (orient:+) max_ev_support = 2 # retained_exon 11780130-11780300 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 11780130-11780300 asmbl_22528 scaffold_19 + intron_skips_exon 11779419-11780572 asmbl_22527 // Retained and Spliced Intron # retained_intron 11832215-11832284 (orient:+) max_ev_support = 3 # spliced_intron 11832215-11832284 (orient:+) max_ev_support = 2 scaffold_19 + intron 11832215-11832284 asmbl_22534 scaffold_19 + retained_intron 11832215-11832284 asmbl_22533 // Retained and Spliced Intron # retained_intron 12105421-12105533 (orient:+) max_ev_support = 1 # spliced_intron 12105421-12105533 (orient:+) max_ev_support = 2 scaffold_19 + intron 12105421-12105533 asmbl_22548 scaffold_19 + retained_intron 12105421-12105533 asmbl_22549 // Retained and Spliced Intron # retained_intron 12207921-12208221 (orient:+) max_ev_support = 5 # spliced_intron 12207921-12208221 (orient:+) max_ev_support = 2 scaffold_19 + intron 12207921-12208221 asmbl_22570,asmbl_22571 scaffold_19 + retained_intron 12207921-12208221 asmbl_22568 // Retained and Spliced Intron # retained_intron 12207952-12208221 (orient:+) max_ev_support = 5 # spliced_intron 12207952-12208221 (orient:+) max_ev_support = 3 scaffold_19 + intron 12207952-12208221 asmbl_22569 scaffold_19 + retained_intron 12207952-12208221 asmbl_22568 // Retained and Spliced Intron # retained_intron 12208560-12208717 (orient:+) max_ev_support = 3 # spliced_intron 12208560-12208717 (orient:+) max_ev_support = 3 scaffold_19 + intron 12208560-12208717 asmbl_22569,asmbl_22571 scaffold_19 + retained_intron 12208560-12208717 asmbl_22568,asmbl_22570 // Exon Skipping and Retention # skipped_exon 12237766-12238160 (orient:+) max_ev_support = 1 # retained_exon 12237937-12237981 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12237937-12237981 asmbl_22573 scaffold_19 + intron_skips_exon 12237766-12238160 asmbl_22574 // Retained and Spliced Intron # retained_intron 12242887-12242971 (orient:+) max_ev_support = 2 # spliced_intron 12242887-12242971 (orient:+) max_ev_support = 2 scaffold_19 + intron 12242887-12242971 asmbl_22573,asmbl_22574 scaffold_19 + retained_intron 12242887-12242971 asmbl_22575 // Retained and Spliced Intron # retained_intron 12250408-12251336 (orient:+) max_ev_support = 2 # spliced_intron 12250408-12251336 (orient:+) max_ev_support = 3 scaffold_19 + intron 12250408-12251336 asmbl_22576 scaffold_19 + retained_intron 12250408-12251336 asmbl_22577,asmbl_22578 // Retained and Spliced Intron # retained_intron 12251512-12251604 (orient:+) max_ev_support = 2 # spliced_intron 12251512-12251604 (orient:+) max_ev_support = 3 scaffold_19 + intron 12251512-12251604 asmbl_22576,asmbl_22578 scaffold_19 + retained_intron 12251512-12251604 asmbl_22577 // Exon Skipping and Retention # skipped_exon 12255741-12257781 (orient:+) max_ev_support = 2 # retained_exon 12256728-12256802 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 12256728-12256802 asmbl_22580 scaffold_19 + intron_skips_exon 12255741-12257781 asmbl_22579 // Exon Skipping and Retention # skipped_exon 12317345-12318253 (orient:+) max_ev_support = 2 # retained_exon 12317592-12317693 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12317592-12317693 asmbl_22582 scaffold_19 + intron_skips_exon 12317345-12318253 asmbl_22583 // Exon Skipping and Retention # skipped_exon 12337312-12337821 (orient:+) max_ev_support = 1 # retained_exon 12337504-12337563 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337504-12337563 asmbl_22594,asmbl_22593 scaffold_19 + intron_skips_exon 12337312-12337821 asmbl_22596 // Exon Skipping and Retention # skipped_exon 12337312-12338070 (orient:+) max_ev_support = 1 # retained_exon 12337504-12337857 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337504-12337563,12337822-12337857 asmbl_22593 scaffold_19 + intron_skips_exon 12337312-12338070 asmbl_22595 // Exon Skipping and Retention # skipped_exon 12337564-12338070 (orient:+) max_ev_support = 2 # retained_exon 12337822-12337857 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 12337822-12337857 asmbl_22593,asmbl_22596 scaffold_19 + intron_skips_exon 12337564-12338070 asmbl_22594 // Retained and Spliced Intron # retained_intron 12423727-12423837 (orient:+) max_ev_support = 2 # spliced_intron 12423727-12423837 (orient:+) max_ev_support = 2 scaffold_19 + intron 12423727-12423837 asmbl_22605 scaffold_19 + retained_intron 12423727-12423837 asmbl_22604 // Retained and Spliced Intron # retained_intron 12432771-12432955 (orient:+) max_ev_support = 1 # spliced_intron 12432771-12432955 (orient:+) max_ev_support = 2 scaffold_19 + intron 12432771-12432955 asmbl_22603,asmbl_22608,asmbl_22611 scaffold_19 + retained_intron 12432771-12432955 asmbl_22607,asmbl_22609,asmbl_22610 // Retained and Spliced Intron # retained_intron 12437236-12437460 (orient:+) max_ev_support = 1 # spliced_intron 12437236-12437460 (orient:+) max_ev_support = 2 scaffold_19 + intron 12437236-12437460 asmbl_22603,asmbl_22608,asmbl_22609,asmbl_22610 scaffold_19 + retained_intron 12437236-12437460 asmbl_22607,asmbl_22611 // Exon Skipping and Retention # skipped_exon 12431776-12432497 (orient:+) max_ev_support = 2 # retained_exon 12432267-12432319 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 12432267-12432319 asmbl_22608,asmbl_22609 scaffold_19 + intron_skips_exon 12431776-12432497 asmbl_22603,asmbl_22607,asmbl_22610,asmbl_22611 // Retained and Spliced Intron # retained_intron 12491455-12492121 (orient:+) max_ev_support = 2 # spliced_intron 12491455-12492121 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491455-12492121 asmbl_22618 scaffold_19 + retained_intron 12491455-12492121 asmbl_22615 // Retained and Spliced Intron # retained_intron 12491455-12492135 (orient:+) max_ev_support = 2 # spliced_intron 12491455-12492135 (orient:+) max_ev_support = 1 scaffold_19 + intron 12491455-12492135 asmbl_22620 scaffold_19 + retained_intron 12491455-12492135 asmbl_22615 // Retained and Spliced Intron # retained_intron 12491455-12492152 (orient:+) max_ev_support = 2 # spliced_intron 12491455-12492152 (orient:+) max_ev_support = 1 scaffold_19 + intron 12491455-12492152 asmbl_22619,asmbl_22622 scaffold_19 + retained_intron 12491455-12492152 asmbl_22615 // Retained and Spliced Intron # retained_intron 12491455-12492160 (orient:+) max_ev_support = 2 # spliced_intron 12491455-12492160 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491455-12492160 asmbl_22616,asmbl_22621 scaffold_19 + retained_intron 12491455-12492160 asmbl_22615 // Retained and Spliced Intron # retained_intron 12491982-12492152 (orient:+) max_ev_support = 2 # spliced_intron 12491982-12492152 (orient:+) max_ev_support = 2 scaffold_19 + intron 12491982-12492152 asmbl_22617 scaffold_19 + retained_intron 12491982-12492152 asmbl_22615 // Retained and Spliced Intron # retained_intron 12492311-12492484 (orient:+) max_ev_support = 1 # spliced_intron 12492311-12492484 (orient:+) max_ev_support = 2 scaffold_19 + intron 12492311-12492484 asmbl_22615,asmbl_22616,asmbl_22617,asmbl_22618,asmbl_22622 scaffold_19 + retained_intron 12492311-12492484 asmbl_22619 // Retained and Spliced Intron # retained_intron 13001384-13001875 (orient:+) max_ev_support = 2 # spliced_intron 13001384-13001875 (orient:+) max_ev_support = 2 scaffold_19 + intron 13001384-13001875 asmbl_22642 scaffold_19 + retained_intron 13001384-13001875 asmbl_22641 // Retained and Spliced Intron # retained_intron 13003307-13003408 (orient:+) max_ev_support = 2 # spliced_intron 13003307-13003408 (orient:+) max_ev_support = 3 scaffold_19 + intron 13003307-13003408 asmbl_22643,asmbl_22644,asmbl_22652 scaffold_19 + retained_intron 13003307-13003408 asmbl_22645 // Retained and Spliced Intron # retained_intron 13007510-13007842 (orient:+) max_ev_support = 2 # spliced_intron 13007510-13007842 (orient:+) max_ev_support = 3 scaffold_19 + intron 13007510-13007842 asmbl_22644,asmbl_22647,asmbl_22648,asmbl_22650 scaffold_19 + retained_intron 13007510-13007842 asmbl_22646 // Retained and Spliced Intron # retained_intron 13007510-13007898 (orient:+) max_ev_support = 2 # spliced_intron 13007510-13007898 (orient:+) max_ev_support = 3 scaffold_19 + intron 13007510-13007898 asmbl_22643,asmbl_22645,asmbl_22649 scaffold_19 + retained_intron 13007510-13007898 asmbl_22646 // Retained and Spliced Intron # retained_intron 13140882-13141025 (orient:+) max_ev_support = 2 # spliced_intron 13140882-13141025 (orient:+) max_ev_support = 1 scaffold_19 + intron 13140882-13141025 asmbl_22662 scaffold_19 + retained_intron 13140882-13141025 asmbl_22660 // Exon Skipping and Retention # skipped_exon 13157579-13158046 (orient:+) max_ev_support = 1 # retained_exon 13157726-13157873 (orient:+) max_ev_support = 3 scaffold_19 + retained_exons 13157726-13157873 asmbl_22666 scaffold_19 + intron_skips_exon 13157579-13158046 asmbl_22667 // Retained and Spliced Intron # retained_intron 13161925-13162003 (orient:+) max_ev_support = 1 # spliced_intron 13161925-13162003 (orient:+) max_ev_support = 1 scaffold_19 + intron 13161925-13162003 asmbl_22666,asmbl_22667,asmbl_22669 scaffold_19 + retained_intron 13161925-13162003 asmbl_22668 // Exon Skipping and Retention # skipped_exon 13173372-13173750 (orient:+) max_ev_support = 2 # retained_exon 13173553-13173662 (orient:+) max_ev_support = 2 scaffold_19 + retained_exons 13173553-13173662 asmbl_22673,asmbl_22675 scaffold_19 + intron_skips_exon 13173372-13173750 asmbl_22674 // Retained and Spliced Intron # retained_intron 13173213-13173287 (orient:+) max_ev_support = 1 # spliced_intron 13173213-13173287 (orient:+) max_ev_support = 2 scaffold_19 + intron 13173213-13173287 asmbl_22673 scaffold_19 + retained_intron 13173213-13173287 asmbl_22675,asmbl_22676 // Exon Skipping and Retention # skipped_exon 13749402-13752259 (orient:+) max_ev_support = 2 # retained_exon 13749588-13749644 (orient:+) max_ev_support = 1 scaffold_19 + retained_exons 13749588-13749644 asmbl_22696 scaffold_19 + intron_skips_exon 13749402-13752259 asmbl_22695 // Retained and Spliced Intron # retained_intron 44017-44055 (orient:-) max_ev_support = 1 # spliced_intron 44017-44055 (orient:-) max_ev_support = 1 scaffold_2 - intron 44017-44055 asmbl_22812 scaffold_2 - retained_intron 44017-44055 asmbl_22813 // Retained and Spliced Intron # retained_intron 276356-276443 (orient:-) max_ev_support = 2 # spliced_intron 276356-276443 (orient:-) max_ev_support = 1 scaffold_2 - intron 276356-276443 asmbl_22822 scaffold_2 - retained_intron 276356-276443 asmbl_22821 // Exon Skipping and Retention # skipped_exon 481946-483382 (orient:-) max_ev_support = 1 # retained_exon 483027-483134 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 483027-483134 asmbl_22829,asmbl_22833 scaffold_2 - intron_skips_exon 481946-483382 asmbl_22830 // Exon Skipping and Retention # skipped_exon 486166-488771 (orient:-) max_ev_support = 1 # retained_exon 487354-487525 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 487354-487525 asmbl_22829,asmbl_22830 scaffold_2 - intron_skips_exon 486166-488771 asmbl_22833 // Retained and Spliced Intron # retained_intron 956724-956897 (orient:-) max_ev_support = 2 # spliced_intron 956724-956897 (orient:-) max_ev_support = 2 scaffold_2 - intron 956724-956897 asmbl_22851 scaffold_2 - retained_intron 956724-956897 asmbl_22850,asmbl_22852 // Retained and Spliced Intron # retained_intron 956971-957115 (orient:-) max_ev_support = 2 # spliced_intron 956971-957115 (orient:-) max_ev_support = 2 scaffold_2 - intron 956971-957115 asmbl_22851,asmbl_22852 scaffold_2 - retained_intron 956971-957115 asmbl_22850 // Exon Skipping and Retention # skipped_exon 1616740-1617196 (orient:-) max_ev_support = 1 # retained_exon 1616827-1616879 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 1616827-1616879 asmbl_22885 scaffold_2 - intron_skips_exon 1616740-1617196 asmbl_22886 // Exon Skipping and Retention # skipped_exon 2297619-2300475 (orient:-) max_ev_support = 2 # retained_exon 2297728-2297862 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 2297728-2297862 asmbl_22911 scaffold_2 - intron_skips_exon 2297619-2300475 asmbl_22910 // Retained and Spliced Intron # retained_intron 2324086-2324113 (orient:-) max_ev_support = 1 # spliced_intron 2324086-2324113 (orient:-) max_ev_support = 1 scaffold_2 - intron 2324086-2324113 asmbl_22914 scaffold_2 - retained_intron 2324086-2324113 asmbl_22915 // Exon Skipping and Retention # skipped_exon 2454814-2455483 (orient:-) max_ev_support = 2 # retained_exon 2455317-2455394 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2455317-2455394 asmbl_22920 scaffold_2 - intron_skips_exon 2454814-2455483 asmbl_22919 // Retained and Spliced Intron # retained_intron 2542873-2542935 (orient:-) max_ev_support = 2 # spliced_intron 2542873-2542935 (orient:-) max_ev_support = 1 scaffold_2 - intron 2542873-2542935 asmbl_22927 scaffold_2 - retained_intron 2542873-2542935 asmbl_22925,asmbl_22926,asmbl_22928 // Exon Skipping and Retention # skipped_exon 2878799-2879496 (orient:-) max_ev_support = 2 # retained_exon 2879362-2879391 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2879362-2879391 asmbl_22956,asmbl_22960,asmbl_22964,asmbl_22965,asmbl_22966 scaffold_2 - intron_skips_exon 2878799-2879496 asmbl_22954,asmbl_22958,asmbl_22963 // Exon Skipping and Retention # skipped_exon 2880763-2882183 (orient:-) max_ev_support = 2 # retained_exon 2881881-2881925 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 2881881-2881925 asmbl_22956,asmbl_22963,asmbl_22964 scaffold_2 - intron_skips_exon 2880763-2882183 asmbl_22954,asmbl_22958,asmbl_22960,asmbl_22965,asmbl_22966 // Exon Skipping and Retention # skipped_exon 2882290-2884803 (orient:-) max_ev_support = 2 # retained_exon 2883733-2883825 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 2883733-2883825 asmbl_22966 scaffold_2 - intron_skips_exon 2882290-2884803 asmbl_22954,asmbl_22956,asmbl_22958,asmbl_22960,asmbl_22962,asmbl_22963,asmbl_22965 // Retained and Spliced Intron # retained_intron 2871451-2871540 (orient:-) max_ev_support = 1 # spliced_intron 2871451-2871540 (orient:-) max_ev_support = 2 scaffold_2 - intron 2871451-2871540 asmbl_22954 scaffold_2 - retained_intron 2871451-2871540 asmbl_22967 // Retained and Spliced Intron # retained_intron 2995343-2995363 (orient:-) max_ev_support = 1 # spliced_intron 2995343-2995363 (orient:-) max_ev_support = 1 scaffold_2 - intron 2995343-2995363 asmbl_22975 scaffold_2 - retained_intron 2995343-2995363 asmbl_22974,asmbl_22976 // Exon Skipping and Retention # skipped_exon 3347885-3348812 (orient:-) max_ev_support = 1 # retained_exon 3348276-3348362 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 3348276-3348362 asmbl_22996 scaffold_2 - intron_skips_exon 3347885-3348812 asmbl_22997 // Exon Skipping and Retention # skipped_exon 3758002-3759036 (orient:-) max_ev_support = 1 # retained_exon 3758310-3758515 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 3758310-3758515 asmbl_23021 scaffold_2 - intron_skips_exon 3758002-3759036 asmbl_23023 // Retained and Spliced Intron # retained_intron 3764034-3764093 (orient:-) max_ev_support = 1 # spliced_intron 3764034-3764093 (orient:-) max_ev_support = 1 scaffold_2 - intron 3764034-3764093 asmbl_23024 scaffold_2 - retained_intron 3764034-3764093 asmbl_23021 // Exon Skipping and Retention # skipped_exon 3862130-3864995 (orient:-) max_ev_support = 1 # retained_exon 3863661-3863789 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 3863661-3863789 asmbl_23036 scaffold_2 - intron_skips_exon 3862130-3864995 asmbl_23037 // Retained and Spliced Intron # retained_intron 4018804-4018989 (orient:-) max_ev_support = 1 # spliced_intron 4018804-4018989 (orient:-) max_ev_support = 1 scaffold_2 - intron 4018804-4018989 asmbl_23066 scaffold_2 - retained_intron 4018804-4018989 asmbl_23065 // Retained and Spliced Intron # retained_intron 4070470-4071066 (orient:-) max_ev_support = 2 # spliced_intron 4070470-4071066 (orient:-) max_ev_support = 1 scaffold_2 - intron 4070470-4071066 asmbl_23077 scaffold_2 - retained_intron 4070470-4071066 asmbl_23076 // Retained and Spliced Intron # retained_intron 4124203-4124621 (orient:-) max_ev_support = 2 # spliced_intron 4124203-4124621 (orient:-) max_ev_support = 2 scaffold_2 - intron 4124203-4124621 asmbl_23078 scaffold_2 - retained_intron 4124203-4124621 asmbl_23079 // Exon Skipping and Retention # skipped_exon 4238823-4241414 (orient:-) max_ev_support = 1 # retained_exon 4240685-4240787 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 4240685-4240787 asmbl_23080,asmbl_23081 scaffold_2 - intron_skips_exon 4238823-4241414 asmbl_23082 // Retained and Spliced Intron # retained_intron 4687220-4687254 (orient:-) max_ev_support = 2 # spliced_intron 4687220-4687254 (orient:-) max_ev_support = 1 scaffold_2 - intron 4687220-4687254 asmbl_23114,asmbl_23116 scaffold_2 - retained_intron 4687220-4687254 asmbl_23113,asmbl_23115 // Retained and Spliced Intron # retained_intron 4687374-4687408 (orient:-) max_ev_support = 1 # spliced_intron 4687374-4687408 (orient:-) max_ev_support = 1 scaffold_2 - intron 4687374-4687408 asmbl_23115,asmbl_23116 scaffold_2 - retained_intron 4687374-4687408 asmbl_23114 // Retained and Spliced Intron # retained_intron 4836305-4836534 (orient:-) max_ev_support = 1 # spliced_intron 4836305-4836534 (orient:-) max_ev_support = 1 scaffold_2 - intron 4836305-4836534 asmbl_23129 scaffold_2 - retained_intron 4836305-4836534 asmbl_23130 // Retained and Spliced Intron # retained_intron 4836605-4836722 (orient:-) max_ev_support = 1 # spliced_intron 4836605-4836722 (orient:-) max_ev_support = 1 scaffold_2 - intron 4836605-4836722 asmbl_23129 scaffold_2 - retained_intron 4836605-4836722 asmbl_23130 // Retained and Spliced Intron # retained_intron 5183182-5183574 (orient:-) max_ev_support = 2 # spliced_intron 5183182-5183574 (orient:-) max_ev_support = 1 scaffold_2 - intron 5183182-5183574 asmbl_23162 scaffold_2 - retained_intron 5183182-5183574 asmbl_23158 // Retained and Spliced Intron # retained_intron 5183182-5183932 (orient:-) max_ev_support = 2 # spliced_intron 5183182-5183932 (orient:-) max_ev_support = 2 scaffold_2 - intron 5183182-5183932 asmbl_23159 scaffold_2 - retained_intron 5183182-5183932 asmbl_23158 // Retained and Spliced Intron # retained_intron 5196150-5196244 (orient:-) max_ev_support = 2 # spliced_intron 5196150-5196244 (orient:-) max_ev_support = 2 scaffold_2 - intron 5196150-5196244 asmbl_23167 scaffold_2 - retained_intron 5196150-5196244 asmbl_23168 // Retained and Spliced Intron # retained_intron 5375992-5376203 (orient:-) max_ev_support = 2 # spliced_intron 5375992-5376203 (orient:-) max_ev_support = 1 scaffold_2 - intron 5375992-5376203 asmbl_23172 scaffold_2 - retained_intron 5375992-5376203 asmbl_23171 // Exon Skipping and Retention # skipped_exon 5374792-5376203 (orient:-) max_ev_support = 2 # retained_exon 5375679-5375991 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5375679-5375991 asmbl_23172 scaffold_2 - intron_skips_exon 5374792-5376203 asmbl_23169 // Retained and Spliced Intron # retained_intron 5391853-5391982 (orient:-) max_ev_support = 1 # spliced_intron 5391853-5391982 (orient:-) max_ev_support = 1 scaffold_2 - intron 5391853-5391982 asmbl_23175 scaffold_2 - retained_intron 5391853-5391982 asmbl_23174 // Retained and Spliced Intron # retained_intron 5391853-5391989 (orient:-) max_ev_support = 1 # spliced_intron 5391853-5391989 (orient:-) max_ev_support = 2 scaffold_2 - intron 5391853-5391989 asmbl_23173 scaffold_2 - retained_intron 5391853-5391989 asmbl_23174 // Retained and Spliced Intron # retained_intron 5392157-5392284 (orient:-) max_ev_support = 1 # spliced_intron 5392157-5392284 (orient:-) max_ev_support = 2 scaffold_2 - intron 5392157-5392284 asmbl_23173,asmbl_23174,asmbl_23175 scaffold_2 - retained_intron 5392157-5392284 asmbl_23176 // Exon Skipping and Retention # skipped_exon 5706732-5707568 (orient:-) max_ev_support = 2 # retained_exon 5707054-5707146 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5707054-5707146 asmbl_23184 scaffold_2 - intron_skips_exon 5706732-5707568 asmbl_23180 // Exon Skipping and Retention # skipped_exon 5706615-5707568 (orient:-) max_ev_support = 2 # retained_exon 5707054-5707146 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 5707054-5707146 asmbl_23184 scaffold_2 - intron_skips_exon 5706615-5707568 asmbl_23181 // Retained and Spliced Intron # retained_intron 6083683-6083943 (orient:-) max_ev_support = 2 # spliced_intron 6083683-6083943 (orient:-) max_ev_support = 2 scaffold_2 - intron 6083683-6083943 asmbl_23200 scaffold_2 - retained_intron 6083683-6083943 asmbl_23199 // Retained and Spliced Intron # retained_intron 6301801-6302073 (orient:-) max_ev_support = 4 # spliced_intron 6301801-6302073 (orient:-) max_ev_support = 3 scaffold_2 - intron 6301801-6302073 asmbl_23217 scaffold_2 - retained_intron 6301801-6302073 asmbl_23216 // Retained and Spliced Intron # retained_intron 6350944-6351030 (orient:-) max_ev_support = 2 # spliced_intron 6350944-6351030 (orient:-) max_ev_support = 3 scaffold_2 - intron 6350944-6351030 asmbl_23220 scaffold_2 - retained_intron 6350944-6351030 asmbl_23221 // Retained and Spliced Intron # retained_intron 6350944-6351046 (orient:-) max_ev_support = 2 # spliced_intron 6350944-6351046 (orient:-) max_ev_support = 1 scaffold_2 - intron 6350944-6351046 asmbl_23223 scaffold_2 - retained_intron 6350944-6351046 asmbl_23221 // Exon Skipping and Retention # skipped_exon 6510601-6512748 (orient:-) max_ev_support = 2 # retained_exon 6512443-6512496 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 6512443-6512496 asmbl_23237 scaffold_2 - intron_skips_exon 6510601-6512748 asmbl_23232 // Exon Skipping and Retention # skipped_exon 6510561-6512748 (orient:-) max_ev_support = 1 # retained_exon 6512443-6512496 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 6512443-6512496 asmbl_23237 scaffold_2 - intron_skips_exon 6510561-6512748 asmbl_23236,asmbl_23238 // Exon Skipping and Retention # skipped_exon 6639380-6640322 (orient:-) max_ev_support = 1 # retained_exon 6639916-6640008 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6639916-6640008 asmbl_23239,asmbl_23241,asmbl_23244,asmbl_23245 scaffold_2 - intron_skips_exon 6639380-6640322 asmbl_23240,asmbl_23243 // Retained and Spliced Intron # retained_intron 6640625-6640693 (orient:-) max_ev_support = 1 # spliced_intron 6640625-6640693 (orient:-) max_ev_support = 2 scaffold_2 - intron 6640625-6640693 asmbl_23239,asmbl_23240,asmbl_23241,asmbl_23243,asmbl_23244 scaffold_2 - retained_intron 6640625-6640693 asmbl_23245 // Retained and Spliced Intron # retained_intron 6679470-6679625 (orient:-) max_ev_support = 3 # spliced_intron 6679470-6679625 (orient:-) max_ev_support = 3 scaffold_2 - intron 6679470-6679625 asmbl_23247 scaffold_2 - retained_intron 6679470-6679625 asmbl_23248 // Exon Skipping and Retention # skipped_exon 6760394-6761638 (orient:-) max_ev_support = 1 # retained_exon 6761484-6761550 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6761484-6761550 asmbl_23257,asmbl_23258,asmbl_23259 scaffold_2 - intron_skips_exon 6760394-6761638 asmbl_23260 // Exon Skipping and Retention # skipped_exon 6761551-6762100 (orient:-) max_ev_support = 2 # retained_exon 6761643-6761771 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 6761643-6761771 asmbl_23258 scaffold_2 - intron_skips_exon 6761551-6762100 asmbl_23257 // Retained and Spliced Intron # retained_intron 7408928-7409546 (orient:-) max_ev_support = 3 # spliced_intron 7408928-7409546 (orient:-) max_ev_support = 2 scaffold_2 - intron 7408928-7409546 asmbl_23280 scaffold_2 - retained_intron 7408928-7409546 asmbl_23277,asmbl_23282 // Exon Skipping and Retention # skipped_exon 7407518-7409546 (orient:-) max_ev_support = 2 # retained_exon 7408529-7408927 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 7408529-7408927 asmbl_23280 scaffold_2 - intron_skips_exon 7407518-7409546 asmbl_23281 // Retained and Spliced Intron # retained_intron 7466796-7467432 (orient:-) max_ev_support = 3 # spliced_intron 7466796-7467432 (orient:-) max_ev_support = 1 scaffold_2 - intron 7466796-7467432 asmbl_23286 scaffold_2 - retained_intron 7466796-7467432 asmbl_23283,asmbl_23285,asmbl_23288 // Exon Skipping and Retention # skipped_exon 7469617-7471000 (orient:-) max_ev_support = 2 # retained_exon 7469728-7469821 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 7469728-7469821 asmbl_23283 scaffold_2 - intron_skips_exon 7469617-7471000 asmbl_23284 // Retained and Spliced Intron # retained_intron 7468981-7469051 (orient:-) max_ev_support = 1 # spliced_intron 7468981-7469051 (orient:-) max_ev_support = 3 scaffold_2 - intron 7468981-7469051 asmbl_23283,asmbl_23284,asmbl_23286 scaffold_2 - retained_intron 7468981-7469051 asmbl_23285,asmbl_23288,asmbl_23289 // Retained and Spliced Intron # retained_intron 7469156-7469515 (orient:-) max_ev_support = 1 # spliced_intron 7469156-7469515 (orient:-) max_ev_support = 2 scaffold_2 - intron 7469156-7469515 asmbl_23284 scaffold_2 - retained_intron 7469156-7469515 asmbl_23285,asmbl_23288,asmbl_23289 // Retained and Spliced Intron # retained_intron 7469205-7469515 (orient:-) max_ev_support = 1 # spliced_intron 7469205-7469515 (orient:-) max_ev_support = 3 scaffold_2 - intron 7469205-7469515 asmbl_23283,asmbl_23286 scaffold_2 - retained_intron 7469205-7469515 asmbl_23285,asmbl_23288,asmbl_23289 // Retained and Spliced Intron # retained_intron 7469822-7470021 (orient:-) max_ev_support = 1 # spliced_intron 7469822-7470021 (orient:-) max_ev_support = 1 scaffold_2 - intron 7469822-7470021 asmbl_23286,asmbl_23289 scaffold_2 - retained_intron 7469822-7470021 asmbl_23285,asmbl_23288 // Exon Skipping and Retention # skipped_exon 7469822-7471000 (orient:-) max_ev_support = 3 # retained_exon 7470022-7470198 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 7470022-7470198 asmbl_23286,asmbl_23289 scaffold_2 - intron_skips_exon 7469822-7471000 asmbl_23283 // Retained and Spliced Intron # retained_intron 7469630-7469727 (orient:-) max_ev_support = 1 # spliced_intron 7469630-7469727 (orient:-) max_ev_support = 3 scaffold_2 - intron 7469630-7469727 asmbl_23283,asmbl_23285,asmbl_23286,asmbl_23289 scaffold_2 - retained_intron 7469630-7469727 asmbl_23288 // Retained and Spliced Intron # retained_intron 7774792-7775188 (orient:-) max_ev_support = 6 # spliced_intron 7774792-7775188 (orient:-) max_ev_support = 2 scaffold_2 - intron 7774792-7775188 asmbl_23298,asmbl_23299 scaffold_2 - retained_intron 7774792-7775188 asmbl_23297 // Retained and Spliced Intron # retained_intron 7775380-7775866 (orient:-) max_ev_support = 2 # spliced_intron 7775380-7775866 (orient:-) max_ev_support = 2 scaffold_2 - intron 7775380-7775866 asmbl_23297,asmbl_23298 scaffold_2 - retained_intron 7775380-7775866 asmbl_23299 // Retained and Spliced Intron # retained_intron 7816023-7816120 (orient:-) max_ev_support = 2 # spliced_intron 7816023-7816120 (orient:-) max_ev_support = 3 scaffold_2 - intron 7816023-7816120 asmbl_23300 scaffold_2 - retained_intron 7816023-7816120 asmbl_23301 // Retained and Spliced Intron # retained_intron 7827117-7827319 (orient:-) max_ev_support = 3 # spliced_intron 7827117-7827319 (orient:-) max_ev_support = 2 scaffold_2 - intron 7827117-7827319 asmbl_23306,asmbl_23307 scaffold_2 - retained_intron 7827117-7827319 asmbl_23305 // Retained and Spliced Intron # retained_intron 7827162-7827319 (orient:-) max_ev_support = 3 # spliced_intron 7827162-7827319 (orient:-) max_ev_support = 3 scaffold_2 - intron 7827162-7827319 asmbl_23304 scaffold_2 - retained_intron 7827162-7827319 asmbl_23305 // Exon Skipping and Retention # skipped_exon 7863293-7865249 (orient:-) max_ev_support = 2 # retained_exon 7864425-7864751 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 7864425-7864751 asmbl_23309 scaffold_2 - intron_skips_exon 7863293-7865249 asmbl_23310 // Retained and Spliced Intron # retained_intron 7923087-7923870 (orient:-) max_ev_support = 1 # spliced_intron 7923087-7923870 (orient:-) max_ev_support = 2 scaffold_2 - intron 7923087-7923870 asmbl_23316,asmbl_23318,asmbl_23319,asmbl_23320 scaffold_2 - retained_intron 7923087-7923870 asmbl_23317 // Retained and Spliced Intron # retained_intron 7925080-7925321 (orient:-) max_ev_support = 1 # spliced_intron 7925080-7925321 (orient:-) max_ev_support = 2 scaffold_2 - intron 7925080-7925321 asmbl_23316,asmbl_23319,asmbl_23320 scaffold_2 - retained_intron 7925080-7925321 asmbl_23318 // Retained and Spliced Intron # retained_intron 7924289-7924370 (orient:-) max_ev_support = 1 # spliced_intron 7924289-7924370 (orient:-) max_ev_support = 2 scaffold_2 - intron 7924289-7924370 asmbl_23316,asmbl_23318,asmbl_23320 scaffold_2 - retained_intron 7924289-7924370 asmbl_23319 // Retained and Spliced Intron # retained_intron 7924499-7924931 (orient:-) max_ev_support = 1 # spliced_intron 7924499-7924931 (orient:-) max_ev_support = 2 scaffold_2 - intron 7924499-7924931 asmbl_23316,asmbl_23318,asmbl_23320 scaffold_2 - retained_intron 7924499-7924931 asmbl_23319 // Retained and Spliced Intron # retained_intron 7922295-7922439 (orient:-) max_ev_support = 1 # spliced_intron 7922295-7922439 (orient:-) max_ev_support = 2 scaffold_2 - intron 7922295-7922439 asmbl_23316,asmbl_23317,asmbl_23318,asmbl_23319 scaffold_2 - retained_intron 7922295-7922439 asmbl_23320 // Retained and Spliced Intron # retained_intron 8055440-8055585 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055585 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055440-8055585 asmbl_23324 scaffold_2 - retained_intron 8055440-8055585 asmbl_23325 // Retained and Spliced Intron # retained_intron 8055440-8055626 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055626 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055440-8055626 asmbl_23327,asmbl_23328 scaffold_2 - retained_intron 8055440-8055626 asmbl_23325 // Retained and Spliced Intron # retained_intron 8055440-8055709 (orient:-) max_ev_support = 2 # spliced_intron 8055440-8055709 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055440-8055709 asmbl_23326 scaffold_2 - retained_intron 8055440-8055709 asmbl_23325 // Retained and Spliced Intron # retained_intron 8055011-8055080 (orient:-) max_ev_support = 1 # spliced_intron 8055011-8055080 (orient:-) max_ev_support = 2 scaffold_2 - intron 8055011-8055080 asmbl_23323,asmbl_23324,asmbl_23325,asmbl_23326,asmbl_23327 scaffold_2 - retained_intron 8055011-8055080 asmbl_23328 // Retained and Spliced Intron # retained_intron 8059380-8059478 (orient:-) max_ev_support = 3 # spliced_intron 8059380-8059478 (orient:-) max_ev_support = 1 scaffold_2 - intron 8059380-8059478 asmbl_23331 scaffold_2 - retained_intron 8059380-8059478 asmbl_23329 // Retained and Spliced Intron # retained_intron 8059384-8059478 (orient:-) max_ev_support = 3 # spliced_intron 8059384-8059478 (orient:-) max_ev_support = 2 scaffold_2 - intron 8059384-8059478 asmbl_23330 scaffold_2 - retained_intron 8059384-8059478 asmbl_23329 // Retained and Spliced Intron # retained_intron 8148213-8148395 (orient:-) max_ev_support = 3 # spliced_intron 8148213-8148395 (orient:-) max_ev_support = 3 scaffold_2 - intron 8148213-8148395 asmbl_23337 scaffold_2 - retained_intron 8148213-8148395 asmbl_23338 // Retained and Spliced Intron # retained_intron 8787993-8788059 (orient:-) max_ev_support = 4 # spliced_intron 8787993-8788059 (orient:-) max_ev_support = 2 scaffold_2 - intron 8787993-8788059 asmbl_23355 scaffold_2 - retained_intron 8787993-8788059 asmbl_23354 // Exon Skipping and Retention # skipped_exon 9140005-9140289 (orient:-) max_ev_support = 1 # retained_exon 9140183-9140186 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 9140183-9140186 asmbl_23370,asmbl_23371 scaffold_2 - intron_skips_exon 9140005-9140289 asmbl_23372,asmbl_23373 // Exon Skipping and Retention # skipped_exon 9189964-9190602 (orient:-) max_ev_support = 3 # retained_exon 9190285-9190308 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 9190285-9190308 asmbl_23378,asmbl_23379,asmbl_23381 scaffold_2 - intron_skips_exon 9189964-9190602 asmbl_23377,asmbl_23380 // Exon Skipping and Retention # skipped_exon 9195241-9195673 (orient:-) max_ev_support = 3 # retained_exon 9195437-9195535 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 9195437-9195535 asmbl_23378,asmbl_23380,asmbl_23382 scaffold_2 - intron_skips_exon 9195241-9195673 asmbl_23377,asmbl_23381 // Retained and Spliced Intron # retained_intron 9191502-9191609 (orient:-) max_ev_support = 2 # spliced_intron 9191502-9191609 (orient:-) max_ev_support = 3 scaffold_2 - intron 9191502-9191609 asmbl_23377,asmbl_23378,asmbl_23380,asmbl_23381,asmbl_23382 scaffold_2 - retained_intron 9191502-9191609 asmbl_23379 // Retained and Spliced Intron # retained_intron 9191729-9191859 (orient:-) max_ev_support = 2 # spliced_intron 9191729-9191859 (orient:-) max_ev_support = 3 scaffold_2 - intron 9191729-9191859 asmbl_23377,asmbl_23378,asmbl_23380,asmbl_23381,asmbl_23382 scaffold_2 - retained_intron 9191729-9191859 asmbl_23379 // Exon Skipping and Retention # skipped_exon 9189964-9190602 (orient:-) max_ev_support = 3 # retained_exon 9190269-9190308 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9190269-9190308 asmbl_23382 scaffold_2 - intron_skips_exon 9189964-9190602 asmbl_23377,asmbl_23380 // Retained and Spliced Intron # retained_intron 9262531-9262914 (orient:-) max_ev_support = 2 # spliced_intron 9262531-9262914 (orient:-) max_ev_support = 2 scaffold_2 - intron 9262531-9262914 asmbl_23389 scaffold_2 - retained_intron 9262531-9262914 asmbl_23388,asmbl_23390 // Retained and Spliced Intron # retained_intron 9322220-9323761 (orient:-) max_ev_support = 1 # spliced_intron 9322220-9323761 (orient:-) max_ev_support = 1 scaffold_2 - intron 9322220-9323761 asmbl_23399 scaffold_2 - retained_intron 9322220-9323761 asmbl_23401 // Retained and Spliced Intron # retained_intron 9322568-9323761 (orient:-) max_ev_support = 1 # spliced_intron 9322568-9323761 (orient:-) max_ev_support = 1 scaffold_2 - intron 9322568-9323761 asmbl_23400 scaffold_2 - retained_intron 9322568-9323761 asmbl_23401 // Exon Skipping and Retention # skipped_exon 9816705-9818285 (orient:-) max_ev_support = 2 # retained_exon 9817364-9817425 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 9817364-9817425 asmbl_23406 scaffold_2 - intron_skips_exon 9816705-9818285 asmbl_23405 // Exon Skipping and Retention # skipped_exon 9860700-9863107 (orient:-) max_ev_support = 1 # retained_exon 9862236-9862343 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 9862236-9862343 asmbl_23409 scaffold_2 - intron_skips_exon 9860700-9863107 asmbl_23410 // Retained and Spliced Intron # retained_intron 9886597-9886832 (orient:-) max_ev_support = 2 # spliced_intron 9886597-9886832 (orient:-) max_ev_support = 1 scaffold_2 - intron 9886597-9886832 asmbl_23416 scaffold_2 - retained_intron 9886597-9886832 asmbl_23414,asmbl_23415 // Retained and Spliced Intron # retained_intron 10373407-10373567 (orient:-) max_ev_support = 2 # spliced_intron 10373407-10373567 (orient:-) max_ev_support = 1 scaffold_2 - intron 10373407-10373567 asmbl_23430 scaffold_2 - retained_intron 10373407-10373567 asmbl_23429,asmbl_23431,asmbl_23432 // Exon Skipping and Retention # skipped_exon 10637962-10638369 (orient:-) max_ev_support = 1 # retained_exon 10638080-10638130 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 10638080-10638130 asmbl_23440,asmbl_23442,asmbl_23444 scaffold_2 - intron_skips_exon 10637962-10638369 asmbl_23441,asmbl_23443 // Retained and Spliced Intron # retained_intron 10640331-10640648 (orient:-) max_ev_support = 2 # spliced_intron 10640331-10640648 (orient:-) max_ev_support = 1 scaffold_2 - intron 10640331-10640648 asmbl_23441,asmbl_23442 scaffold_2 - retained_intron 10640331-10640648 asmbl_23440,asmbl_23443,asmbl_23444 // Retained and Spliced Intron # retained_intron 10635940-10636060 (orient:-) max_ev_support = 1 # spliced_intron 10635940-10636060 (orient:-) max_ev_support = 2 scaffold_2 - intron 10635940-10636060 asmbl_23440,asmbl_23441,asmbl_23442,asmbl_23443 scaffold_2 - retained_intron 10635940-10636060 asmbl_23444 // Retained and Spliced Intron # retained_intron 11199609-11200469 (orient:-) max_ev_support = 3 # spliced_intron 11199609-11200469 (orient:-) max_ev_support = 2 scaffold_2 - intron 11199609-11200469 asmbl_23462 scaffold_2 - retained_intron 11199609-11200469 asmbl_23460,asmbl_23461 // Retained and Spliced Intron # retained_intron 11448324-11448569 (orient:-) max_ev_support = 2 # spliced_intron 11448324-11448569 (orient:-) max_ev_support = 2 scaffold_2 - intron 11448324-11448569 asmbl_23464 scaffold_2 - retained_intron 11448324-11448569 asmbl_23463 // Retained and Spliced Intron # retained_intron 12645103-12645138 (orient:-) max_ev_support = 1 # spliced_intron 12645103-12645138 (orient:-) max_ev_support = 1 scaffold_2 - intron 12645103-12645138 asmbl_23483 scaffold_2 - retained_intron 12645103-12645138 asmbl_23484 // Exon Skipping and Retention # skipped_exon 12653089-12653786 (orient:-) max_ev_support = 3 # retained_exon 12653219-12653271 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 12653219-12653271 asmbl_23489 scaffold_2 - intron_skips_exon 12653089-12653786 asmbl_23488 // Retained and Spliced Intron # retained_intron 12727849-12728348 (orient:-) max_ev_support = 1 # spliced_intron 12727849-12728348 (orient:-) max_ev_support = 2 scaffold_2 - intron 12727849-12728348 asmbl_23493 scaffold_2 - retained_intron 12727849-12728348 asmbl_23494 // Retained and Spliced Intron # retained_intron 13071028-13071351 (orient:-) max_ev_support = 1 # spliced_intron 13071028-13071351 (orient:-) max_ev_support = 2 scaffold_2 - intron 13071028-13071351 asmbl_23503,asmbl_23504,asmbl_23505,asmbl_23506,asmbl_23508 scaffold_2 - retained_intron 13071028-13071351 asmbl_23507,asmbl_23509 // Exon Skipping and Retention # skipped_exon 13393860-13394379 (orient:-) max_ev_support = 1 # retained_exon 13394140-13394233 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 13394140-13394233 asmbl_23526 scaffold_2 - intron_skips_exon 13393860-13394379 asmbl_23527 // Exon Skipping and Retention # skipped_exon 13445747-13448231 (orient:-) max_ev_support = 1 # retained_exon 13445854-13446506 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 13445854-13445948,13446064-13446191,13446392-13446506 asmbl_23530,asmbl_23532 scaffold_2 - intron_skips_exon 13445747-13448231 asmbl_23533 // Retained and Spliced Intron # retained_intron 13445747-13445853 (orient:-) max_ev_support = 1 # spliced_intron 13445747-13445853 (orient:-) max_ev_support = 2 scaffold_2 - intron 13445747-13445853 asmbl_23530,asmbl_23532 scaffold_2 - retained_intron 13445747-13445853 asmbl_23531 // Retained and Spliced Intron # retained_intron 13754062-13754214 (orient:-) max_ev_support = 1 # spliced_intron 13754062-13754214 (orient:-) max_ev_support = 2 scaffold_2 - intron 13754062-13754214 asmbl_23538,asmbl_23540 scaffold_2 - retained_intron 13754062-13754214 asmbl_23539 // Retained and Spliced Intron # retained_intron 13754726-13754863 (orient:-) max_ev_support = 1 # spliced_intron 13754726-13754863 (orient:-) max_ev_support = 2 scaffold_2 - intron 13754726-13754863 asmbl_23538,asmbl_23539 scaffold_2 - retained_intron 13754726-13754863 asmbl_23540 // Exon Skipping and Retention # skipped_exon 13896835-13897401 (orient:-) max_ev_support = 2 # retained_exon 13897141-13897181 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 13897141-13897181 asmbl_23554,asmbl_23555 scaffold_2 - intron_skips_exon 13896835-13897401 asmbl_23549 // Retained and Spliced Intron # retained_intron 13961990-13962517 (orient:-) max_ev_support = 2 # spliced_intron 13961990-13962517 (orient:-) max_ev_support = 2 scaffold_2 - intron 13961990-13962517 asmbl_23564 scaffold_2 - retained_intron 13961990-13962517 asmbl_23565 // Exon Skipping and Retention # skipped_exon 14014078-14014694 (orient:-) max_ev_support = 3 # retained_exon 14014162-14014256 (orient:-) max_ev_support = 3 scaffold_2 - retained_exons 14014162-14014256 asmbl_23570 scaffold_2 - intron_skips_exon 14014078-14014694 asmbl_23571 // Exon Skipping and Retention # skipped_exon 14136270-14137059 (orient:-) max_ev_support = 1 # retained_exon 14136505-14136572 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 14136505-14136572 asmbl_23573,asmbl_23575,asmbl_23577 scaffold_2 - intron_skips_exon 14136270-14137059 asmbl_23574 // Retained and Spliced Intron # retained_intron 14132199-14132279 (orient:-) max_ev_support = 1 # spliced_intron 14132199-14132279 (orient:-) max_ev_support = 2 scaffold_2 - intron 14132199-14132279 asmbl_23573,asmbl_23574 scaffold_2 - retained_intron 14132199-14132279 asmbl_23575 // Retained and Spliced Intron # retained_intron 14190516-14191409 (orient:-) max_ev_support = 2 # spliced_intron 14190516-14191409 (orient:-) max_ev_support = 1 scaffold_2 - intron 14190516-14191409 asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585 scaffold_2 - retained_intron 14190516-14191409 asmbl_23579,asmbl_23580,asmbl_23586 // Retained and Spliced Intron # retained_intron 14191448-14192045 (orient:-) max_ev_support = 2 # spliced_intron 14191448-14192045 (orient:-) max_ev_support = 1 scaffold_2 - intron 14191448-14192045 asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584 scaffold_2 - retained_intron 14191448-14192045 asmbl_23579,asmbl_23580,asmbl_23585,asmbl_23586 // Retained and Spliced Intron # retained_intron 14192137-14192314 (orient:-) max_ev_support = 2 # spliced_intron 14192137-14192314 (orient:-) max_ev_support = 1 scaffold_2 - intron 14192137-14192314 asmbl_23580,asmbl_23581,asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585,asmbl_23586 scaffold_2 - retained_intron 14192137-14192314 asmbl_23579 // Retained and Spliced Intron # retained_intron 14193481-14193569 (orient:-) max_ev_support = 1 # spliced_intron 14193481-14193569 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193481-14193569 asmbl_23583,asmbl_23585 scaffold_2 - retained_intron 14193481-14193569 asmbl_23580,asmbl_23581,asmbl_23582,asmbl_23584,asmbl_23586 // Retained and Spliced Intron # retained_intron 14193694-14193809 (orient:-) max_ev_support = 1 # spliced_intron 14193694-14193809 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193694-14193809 asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585 scaffold_2 - retained_intron 14193694-14193809 asmbl_23580,asmbl_23586 // Retained and Spliced Intron # retained_intron 14193353-14193458 (orient:-) max_ev_support = 1 # spliced_intron 14193353-14193458 (orient:-) max_ev_support = 1 scaffold_2 - intron 14193353-14193458 asmbl_23580,asmbl_23581,asmbl_23583,asmbl_23584,asmbl_23585 scaffold_2 - retained_intron 14193353-14193458 asmbl_23582,asmbl_23586 // Exon Skipping and Retention # skipped_exon 14193588-14193798 (orient:-) max_ev_support = 1 # retained_exon 14193683-14193693 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14193683-14193693 asmbl_23582,asmbl_23583,asmbl_23584,asmbl_23585 scaffold_2 - intron_skips_exon 14193588-14193798 asmbl_23581 // Retained and Spliced Intron # retained_intron 14203673-14203696 (orient:-) max_ev_support = 1 # spliced_intron 14203673-14203696 (orient:-) max_ev_support = 1 scaffold_2 - intron 14203673-14203696 asmbl_23592 scaffold_2 - retained_intron 14203673-14203696 asmbl_23591,asmbl_23593 // Retained and Spliced Intron # retained_intron 14221018-14221150 (orient:-) max_ev_support = 2 # spliced_intron 14221018-14221150 (orient:-) max_ev_support = 1 scaffold_2 - intron 14221018-14221150 asmbl_23597,asmbl_23599 scaffold_2 - retained_intron 14221018-14221150 asmbl_23595,asmbl_23598 // Retained and Spliced Intron # retained_intron 14220662-14220786 (orient:-) max_ev_support = 1 # spliced_intron 14220662-14220786 (orient:-) max_ev_support = 2 scaffold_2 - intron 14220662-14220786 asmbl_23595,asmbl_23597,asmbl_23599 scaffold_2 - retained_intron 14220662-14220786 asmbl_23598,asmbl_23600 // Retained and Spliced Intron # retained_intron 14220832-14221010 (orient:-) max_ev_support = 1 # spliced_intron 14220832-14221010 (orient:-) max_ev_support = 2 scaffold_2 - intron 14220832-14221010 asmbl_23595,asmbl_23597,asmbl_23599,asmbl_23600 scaffold_2 - retained_intron 14220832-14221010 asmbl_23598 // Retained and Spliced Intron # retained_intron 14219858-14219944 (orient:-) max_ev_support = 1 # spliced_intron 14219858-14219944 (orient:-) max_ev_support = 2 scaffold_2 - intron 14219858-14219944 asmbl_23595,asmbl_23597,asmbl_23598 scaffold_2 - retained_intron 14219858-14219944 asmbl_23599 // Exon Skipping and Retention # skipped_exon 14228244-14228598 (orient:-) max_ev_support = 1 # retained_exon 14228449-14228452 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14228449-14228452 asmbl_23601 scaffold_2 - intron_skips_exon 14228244-14228598 asmbl_23602 // Exon Skipping and Retention # skipped_exon 14231852-14232094 (orient:-) max_ev_support = 1 # retained_exon 14231966-14231969 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 14231966-14231969 asmbl_23603 scaffold_2 - intron_skips_exon 14231852-14232094 asmbl_23604 // Exon Skipping and Retention # skipped_exon 14342781-14343126 (orient:-) max_ev_support = 1 # retained_exon 14342901-14343035 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 14342901-14343035 asmbl_23610 scaffold_2 - intron_skips_exon 14342781-14343126 asmbl_23612 // Retained and Spliced Intron # retained_intron 14462273-14462391 (orient:-) max_ev_support = 1 # spliced_intron 14462273-14462391 (orient:-) max_ev_support = 2 scaffold_2 - intron 14462273-14462391 asmbl_23617 scaffold_2 - retained_intron 14462273-14462391 asmbl_23618 // Retained and Spliced Intron # retained_intron 15805763-15805856 (orient:-) max_ev_support = 2 # spliced_intron 15805763-15805856 (orient:-) max_ev_support = 1 scaffold_2 - intron 15805763-15805856 asmbl_23674 scaffold_2 - retained_intron 15805763-15805856 asmbl_23673 // Retained and Spliced Intron # retained_intron 15872204-15872339 (orient:-) max_ev_support = 1 # spliced_intron 15872204-15872339 (orient:-) max_ev_support = 1 scaffold_2 - intron 15872204-15872339 asmbl_23675,asmbl_23677 scaffold_2 - retained_intron 15872204-15872339 asmbl_23676 // Retained and Spliced Intron # retained_intron 16087681-16088030 (orient:-) max_ev_support = 2 # spliced_intron 16087681-16088030 (orient:-) max_ev_support = 2 scaffold_2 - intron 16087681-16088030 asmbl_23682,asmbl_23685,asmbl_23686 scaffold_2 - retained_intron 16087681-16088030 asmbl_23683 // Retained and Spliced Intron # retained_intron 16085317-16085688 (orient:-) max_ev_support = 1 # spliced_intron 16085317-16085688 (orient:-) max_ev_support = 2 scaffold_2 - intron 16085317-16085688 asmbl_23682 scaffold_2 - retained_intron 16085317-16085688 asmbl_23685,asmbl_23686 // Retained and Spliced Intron # retained_intron 16084074-16084172 (orient:-) max_ev_support = 1 # spliced_intron 16084074-16084172 (orient:-) max_ev_support = 2 scaffold_2 - intron 16084074-16084172 asmbl_23682,asmbl_23685 scaffold_2 - retained_intron 16084074-16084172 asmbl_23686 // Retained and Spliced Intron # retained_intron 16101801-16102006 (orient:-) max_ev_support = 2 # spliced_intron 16101801-16102006 (orient:-) max_ev_support = 2 scaffold_2 - intron 16101801-16102006 asmbl_23690 scaffold_2 - retained_intron 16101801-16102006 asmbl_23689 // Retained and Spliced Intron # retained_intron 16405690-16405769 (orient:-) max_ev_support = 1 # spliced_intron 16405690-16405769 (orient:-) max_ev_support = 2 scaffold_2 - intron 16405690-16405769 asmbl_23699 scaffold_2 - retained_intron 16405690-16405769 asmbl_23700 // Retained and Spliced Intron # retained_intron 16413485-16413596 (orient:-) max_ev_support = 1 # spliced_intron 16413485-16413596 (orient:-) max_ev_support = 2 scaffold_2 - intron 16413485-16413596 asmbl_23702,asmbl_23704,asmbl_23705,asmbl_23706 scaffold_2 - retained_intron 16413485-16413596 asmbl_23703 // Retained and Spliced Intron # retained_intron 16414057-16414370 (orient:-) max_ev_support = 1 # spliced_intron 16414057-16414370 (orient:-) max_ev_support = 2 scaffold_2 - intron 16414057-16414370 asmbl_23702,asmbl_23704,asmbl_23707 scaffold_2 - retained_intron 16414057-16414370 asmbl_23705,asmbl_23708 // Retained and Spliced Intron # retained_intron 16414060-16414370 (orient:-) max_ev_support = 1 # spliced_intron 16414060-16414370 (orient:-) max_ev_support = 1 scaffold_2 - intron 16414060-16414370 asmbl_23703,asmbl_23706 scaffold_2 - retained_intron 16414060-16414370 asmbl_23705,asmbl_23708 // Retained and Spliced Intron # retained_intron 16414525-16414765 (orient:-) max_ev_support = 1 # spliced_intron 16414525-16414765 (orient:-) max_ev_support = 2 scaffold_2 - intron 16414525-16414765 asmbl_23702,asmbl_23703,asmbl_23704,asmbl_23706,asmbl_23708 scaffold_2 - retained_intron 16414525-16414765 asmbl_23705 // Retained and Spliced Intron # retained_intron 17014420-17014564 (orient:-) max_ev_support = 3 # spliced_intron 17014420-17014564 (orient:-) max_ev_support = 2 scaffold_2 - intron 17014420-17014564 asmbl_23721,asmbl_23722 scaffold_2 - retained_intron 17014420-17014564 asmbl_23720 // Exon Skipping and Retention # skipped_exon 17015412-17016299 (orient:-) max_ev_support = 2 # retained_exon 17015759-17016188 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 17015759-17015906,17016088-17016188 asmbl_23721 scaffold_2 - intron_skips_exon 17015412-17016299 asmbl_23720,asmbl_23722 // Retained and Spliced Intron # retained_intron 17234631-17234740 (orient:-) max_ev_support = 3 # spliced_intron 17234631-17234740 (orient:-) max_ev_support = 1 scaffold_2 - intron 17234631-17234740 asmbl_23731 scaffold_2 - retained_intron 17234631-17234740 asmbl_23730 // Retained and Spliced Intron # retained_intron 17237710-17237871 (orient:-) max_ev_support = 2 # spliced_intron 17237710-17237871 (orient:-) max_ev_support = 2 scaffold_2 - intron 17237710-17237871 asmbl_23732 scaffold_2 - retained_intron 17237710-17237871 asmbl_23733 // Retained and Spliced Intron # retained_intron 17445635-17445797 (orient:-) max_ev_support = 2 # spliced_intron 17445635-17445797 (orient:-) max_ev_support = 1 scaffold_2 - intron 17445635-17445797 asmbl_23738 scaffold_2 - retained_intron 17445635-17445797 asmbl_23737 // Retained and Spliced Intron # retained_intron 17656069-17656578 (orient:-) max_ev_support = 2 # spliced_intron 17656069-17656578 (orient:-) max_ev_support = 1 scaffold_2 - intron 17656069-17656578 asmbl_23748 scaffold_2 - retained_intron 17656069-17656578 asmbl_23747 // Retained and Spliced Intron # retained_intron 17708369-17708455 (orient:-) max_ev_support = 1 # spliced_intron 17708369-17708455 (orient:-) max_ev_support = 2 scaffold_2 - intron 17708369-17708455 asmbl_23751,asmbl_23753 scaffold_2 - retained_intron 17708369-17708455 asmbl_23752,asmbl_23754 // Exon Skipping and Retention # skipped_exon 17714460-17715722 (orient:-) max_ev_support = 2 # retained_exon 17715161-17715202 (orient:-) max_ev_support = 2 scaffold_2 - retained_exons 17715161-17715202 asmbl_23756,asmbl_23757 scaffold_2 - intron_skips_exon 17714460-17715722 asmbl_23755,asmbl_23758 // Retained and Spliced Intron # retained_intron 17838616-17838702 (orient:-) max_ev_support = 1 # spliced_intron 17838616-17838702 (orient:-) max_ev_support = 2 scaffold_2 - intron 17838616-17838702 asmbl_23768 scaffold_2 - retained_intron 17838616-17838702 asmbl_23771 // Retained and Spliced Intron # retained_intron 17932892-17932980 (orient:-) max_ev_support = 2 # spliced_intron 17932892-17932980 (orient:-) max_ev_support = 1 scaffold_2 - intron 17932892-17932980 asmbl_23775 scaffold_2 - retained_intron 17932892-17932980 asmbl_23774 // Retained and Spliced Intron # retained_intron 18591305-18591383 (orient:-) max_ev_support = 2 # spliced_intron 18591305-18591383 (orient:-) max_ev_support = 2 scaffold_2 - intron 18591305-18591383 asmbl_23816 scaffold_2 - retained_intron 18591305-18591383 asmbl_23815 // Retained and Spliced Intron # retained_intron 18610276-18610515 (orient:-) max_ev_support = 3 # spliced_intron 18610276-18610515 (orient:-) max_ev_support = 3 scaffold_2 - intron 18610276-18610515 asmbl_23817 scaffold_2 - retained_intron 18610276-18610515 asmbl_23818 // Retained and Spliced Intron # retained_intron 18610276-18610519 (orient:-) max_ev_support = 3 # spliced_intron 18610276-18610519 (orient:-) max_ev_support = 1 scaffold_2 - intron 18610276-18610519 asmbl_23819 scaffold_2 - retained_intron 18610276-18610519 asmbl_23818 // Retained and Spliced Intron # retained_intron 18614248-18614705 (orient:-) max_ev_support = 1 # spliced_intron 18614248-18614705 (orient:-) max_ev_support = 2 scaffold_2 - intron 18614248-18614705 asmbl_23821 scaffold_2 - retained_intron 18614248-18614705 asmbl_23823 // Retained and Spliced Intron # retained_intron 18614288-18614705 (orient:-) max_ev_support = 1 # spliced_intron 18614288-18614705 (orient:-) max_ev_support = 1 scaffold_2 - intron 18614288-18614705 asmbl_23822 scaffold_2 - retained_intron 18614288-18614705 asmbl_23823 // Retained and Spliced Intron # retained_intron 18730231-18730319 (orient:-) max_ev_support = 1 # spliced_intron 18730231-18730319 (orient:-) max_ev_support = 2 scaffold_2 - intron 18730231-18730319 asmbl_23832 scaffold_2 - retained_intron 18730231-18730319 asmbl_23833 // Exon Skipping and Retention # skipped_exon 19025086-19025969 (orient:-) max_ev_support = 1 # retained_exon 19025541-19025614 (orient:-) max_ev_support = 1 scaffold_2 - retained_exons 19025541-19025614 asmbl_23861 scaffold_2 - intron_skips_exon 19025086-19025969 asmbl_23862 // Retained and Spliced Intron # retained_intron 19299385-19299486 (orient:-) max_ev_support = 3 # spliced_intron 19299385-19299486 (orient:-) max_ev_support = 2 scaffold_2 - intron 19299385-19299486 asmbl_23876 scaffold_2 - retained_intron 19299385-19299486 asmbl_23875,asmbl_23879 // Retained and Spliced Intron # retained_intron 19521884-19522271 (orient:-) max_ev_support = 5 # spliced_intron 19521884-19522271 (orient:-) max_ev_support = 1 scaffold_2 - intron 19521884-19522271 asmbl_23889 scaffold_2 - retained_intron 19521884-19522271 asmbl_23888 // Retained and Spliced Intron # retained_intron 19892061-19892133 (orient:-) max_ev_support = 1 # spliced_intron 19892061-19892133 (orient:-) max_ev_support = 1 scaffold_2 - intron 19892061-19892133 asmbl_23895 scaffold_2 - retained_intron 19892061-19892133 asmbl_23894 // Retained and Spliced Intron # retained_intron 20429623-20429784 (orient:-) max_ev_support = 1 # spliced_intron 20429623-20429784 (orient:-) max_ev_support = 2 scaffold_2 - intron 20429623-20429784 asmbl_23921 scaffold_2 - retained_intron 20429623-20429784 asmbl_23922 // Exon Skipping and Retention # skipped_exon 30795-32149 (orient:+) max_ev_support = 2 # retained_exon 30939-31692 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 30939-31080,31533-31692 asmbl_24076,asmbl_24077,asmbl_24079,asmbl_24081,asmbl_24082 scaffold_2 + intron_skips_exon 30795-32149 asmbl_24078 // Retained and Spliced Intron # retained_intron 166805-166882 (orient:+) max_ev_support = 1 # spliced_intron 166805-166882 (orient:+) max_ev_support = 2 scaffold_2 + intron 166805-166882 asmbl_24095,asmbl_24097,asmbl_24098 scaffold_2 + retained_intron 166805-166882 asmbl_24096 // Retained and Spliced Intron # retained_intron 690646-690687 (orient:+) max_ev_support = 1 # spliced_intron 690646-690687 (orient:+) max_ev_support = 1 scaffold_2 + intron 690646-690687 asmbl_24117 scaffold_2 + retained_intron 690646-690687 asmbl_24115,asmbl_24116,asmbl_24118 // Retained and Spliced Intron # retained_intron 690723-690918 (orient:+) max_ev_support = 1 # spliced_intron 690723-690918 (orient:+) max_ev_support = 1 scaffold_2 + intron 690723-690918 asmbl_24116 scaffold_2 + retained_intron 690723-690918 asmbl_24117 // Retained and Spliced Intron # retained_intron 690765-690806 (orient:+) max_ev_support = 1 # spliced_intron 690765-690806 (orient:+) max_ev_support = 1 scaffold_2 + intron 690765-690806 asmbl_24115 scaffold_2 + retained_intron 690765-690806 asmbl_24117,asmbl_24118 // Exon Skipping and Retention # skipped_exon 801491-802473 (orient:+) max_ev_support = 1 # retained_exon 801890-801955 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 801890-801955 asmbl_24127 scaffold_2 + intron_skips_exon 801491-802473 asmbl_24128 // Retained and Spliced Intron # retained_intron 884927-885046 (orient:+) max_ev_support = 1 # spliced_intron 884927-885046 (orient:+) max_ev_support = 1 scaffold_2 + intron 884927-885046 asmbl_24142,asmbl_24144,asmbl_24145 scaffold_2 + retained_intron 884927-885046 asmbl_24143 // Retained and Spliced Intron # retained_intron 885176-885305 (orient:+) max_ev_support = 1 # spliced_intron 885176-885305 (orient:+) max_ev_support = 1 scaffold_2 + intron 885176-885305 asmbl_24142,asmbl_24144,asmbl_24145 scaffold_2 + retained_intron 885176-885305 asmbl_24143 // Retained and Spliced Intron # retained_intron 885396-885480 (orient:+) max_ev_support = 1 # spliced_intron 885396-885480 (orient:+) max_ev_support = 1 scaffold_2 + intron 885396-885480 asmbl_24142,asmbl_24144,asmbl_24145 scaffold_2 + retained_intron 885396-885480 asmbl_24143 // Retained and Spliced Intron # retained_intron 883173-884738 (orient:+) max_ev_support = 1 # spliced_intron 883173-884738 (orient:+) max_ev_support = 1 scaffold_2 + intron 883173-884738 asmbl_24142,asmbl_24143 scaffold_2 + retained_intron 883173-884738 asmbl_24145 // Retained and Spliced Intron # retained_intron 883173-884775 (orient:+) max_ev_support = 1 # spliced_intron 883173-884775 (orient:+) max_ev_support = 1 scaffold_2 + intron 883173-884775 asmbl_24144 scaffold_2 + retained_intron 883173-884775 asmbl_24145 // Retained and Spliced Intron # retained_intron 888327-888347 (orient:+) max_ev_support = 3 # spliced_intron 888327-888347 (orient:+) max_ev_support = 1 scaffold_2 + intron 888327-888347 asmbl_24152 scaffold_2 + retained_intron 888327-888347 asmbl_24146,asmbl_24147,asmbl_24148,asmbl_24149,asmbl_24150 // Retained and Spliced Intron # retained_intron 888658-888815 (orient:+) max_ev_support = 3 # spliced_intron 888658-888815 (orient:+) max_ev_support = 1 scaffold_2 + intron 888658-888815 asmbl_24147,asmbl_24148,asmbl_24150,asmbl_24152,asmbl_24153 scaffold_2 + retained_intron 888658-888815 asmbl_24146 // Retained and Spliced Intron # retained_intron 888658-888818 (orient:+) max_ev_support = 3 # spliced_intron 888658-888818 (orient:+) max_ev_support = 1 scaffold_2 + intron 888658-888818 asmbl_24149 scaffold_2 + retained_intron 888658-888818 asmbl_24146 // Retained and Spliced Intron # retained_intron 888918-889046 (orient:+) max_ev_support = 3 # spliced_intron 888918-889046 (orient:+) max_ev_support = 1 scaffold_2 + intron 888918-889046 asmbl_24148,asmbl_24149 scaffold_2 + retained_intron 888918-889046 asmbl_24146,asmbl_24147,asmbl_24150,asmbl_24152 // Exon Skipping and Retention # skipped_exon 888658-889898 (orient:+) max_ev_support = 1 # retained_exon 888816-888917 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 888816-888917 asmbl_24153 scaffold_2 + intron_skips_exon 888658-889898 asmbl_24154 // Retained and Spliced Intron # retained_intron 891608-892306 (orient:+) max_ev_support = 6 # spliced_intron 891608-892306 (orient:+) max_ev_support = 2 scaffold_2 + intron 891608-892306 asmbl_24158,asmbl_24160,asmbl_24161 scaffold_2 + retained_intron 891608-892306 asmbl_24155,asmbl_24156 // Retained and Spliced Intron # retained_intron 892404-892512 (orient:+) max_ev_support = 2 # spliced_intron 892404-892512 (orient:+) max_ev_support = 2 scaffold_2 + intron 892404-892512 asmbl_24158,asmbl_24160,asmbl_24161 scaffold_2 + retained_intron 892404-892512 asmbl_24155,asmbl_24156,asmbl_24163 // Retained and Spliced Intron # retained_intron 892931-893048 (orient:+) max_ev_support = 2 # spliced_intron 892931-893048 (orient:+) max_ev_support = 1 scaffold_2 + intron 892931-893048 asmbl_24160,asmbl_24163 scaffold_2 + retained_intron 892931-893048 asmbl_24155,asmbl_24156,asmbl_24158,asmbl_24161 // Exon Skipping and Retention # skipped_exon 893116-894302 (orient:+) max_ev_support = 2 # retained_exon 893276-893361 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 893276-893361 asmbl_24162 scaffold_2 + intron_skips_exon 893116-894302 asmbl_24155,asmbl_24161,asmbl_24163 // Exon Skipping and Retention # skipped_exon 893116-894265 (orient:+) max_ev_support = 2 # retained_exon 893276-893361 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 893276-893361 asmbl_24162 scaffold_2 + intron_skips_exon 893116-894265 asmbl_24156,asmbl_24158,asmbl_24160 // Retained and Spliced Intron # retained_intron 897724-898862 (orient:+) max_ev_support = 3 # spliced_intron 897724-898862 (orient:+) max_ev_support = 2 scaffold_2 + intron 897724-898862 asmbl_24165,asmbl_24166,asmbl_24169 scaffold_2 + retained_intron 897724-898862 asmbl_24164,asmbl_24167,asmbl_24168 // Retained and Spliced Intron # retained_intron 898896-899000 (orient:+) max_ev_support = 3 # spliced_intron 898896-899000 (orient:+) max_ev_support = 2 scaffold_2 + intron 898896-899000 asmbl_24165,asmbl_24166,asmbl_24167,asmbl_24168 scaffold_2 + retained_intron 898896-899000 asmbl_24164,asmbl_24169 // Retained and Spliced Intron # retained_intron 899038-899115 (orient:+) max_ev_support = 3 # spliced_intron 899038-899115 (orient:+) max_ev_support = 2 scaffold_2 + intron 899038-899115 asmbl_24165,asmbl_24166,asmbl_24167 scaffold_2 + retained_intron 899038-899115 asmbl_24164,asmbl_24168,asmbl_24169 // Retained and Spliced Intron # retained_intron 899248-899414 (orient:+) max_ev_support = 2 # spliced_intron 899248-899414 (orient:+) max_ev_support = 2 scaffold_2 + intron 899248-899414 asmbl_24165,asmbl_24166,asmbl_24167 scaffold_2 + retained_intron 899248-899414 asmbl_24164,asmbl_24169 // Retained and Spliced Intron # retained_intron 899505-899602 (orient:+) max_ev_support = 1 # spliced_intron 899505-899602 (orient:+) max_ev_support = 2 scaffold_2 + intron 899505-899602 asmbl_24165,asmbl_24166,asmbl_24167 scaffold_2 + retained_intron 899505-899602 asmbl_24164,asmbl_24169 // Retained and Spliced Intron # retained_intron 899777-899876 (orient:+) max_ev_support = 2 # spliced_intron 899777-899876 (orient:+) max_ev_support = 2 scaffold_2 + intron 899777-899876 asmbl_24165,asmbl_24167 scaffold_2 + retained_intron 899777-899876 asmbl_24166 // Exon Skipping and Retention # skipped_exon 923893-926762 (orient:+) max_ev_support = 2 # retained_exon 924482-924504 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 924482-924504 asmbl_24174,asmbl_24175 scaffold_2 + intron_skips_exon 923893-926762 asmbl_24171,asmbl_24173 // Exon Skipping and Retention # skipped_exon 923893-926762 (orient:+) max_ev_support = 2 # retained_exon 924482-926099 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 924482-924508,926071-926099 asmbl_24176 scaffold_2 + intron_skips_exon 923893-926762 asmbl_24171,asmbl_24173 // Exon Skipping and Retention # skipped_exon 924505-926762 (orient:+) max_ev_support = 1 # retained_exon 926071-926099 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 926071-926099 asmbl_24176 scaffold_2 + intron_skips_exon 924505-926762 asmbl_24174,asmbl_24175 // Exon Skipping and Retention # skipped_exon 923893-926762 (orient:+) max_ev_support = 2 # retained_exon 924482-924508 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 924482-924508 asmbl_24177 scaffold_2 + intron_skips_exon 923893-926762 asmbl_24171,asmbl_24173 // Retained and Spliced Intron # retained_intron 926100-926762 (orient:+) max_ev_support = 1 # spliced_intron 926100-926762 (orient:+) max_ev_support = 1 scaffold_2 + intron 926100-926762 asmbl_24176 scaffold_2 + retained_intron 926100-926762 asmbl_24177 // Retained and Spliced Intron # retained_intron 943318-943692 (orient:+) max_ev_support = 2 # spliced_intron 943318-943692 (orient:+) max_ev_support = 2 scaffold_2 + intron 943318-943692 asmbl_24185 scaffold_2 + retained_intron 943318-943692 asmbl_24184 // Retained and Spliced Intron # retained_intron 950718-951105 (orient:+) max_ev_support = 1 # spliced_intron 950718-951105 (orient:+) max_ev_support = 1 scaffold_2 + intron 950718-951105 asmbl_24187,asmbl_24188,asmbl_24189 scaffold_2 + retained_intron 950718-951105 asmbl_24186,asmbl_24191 // Retained and Spliced Intron # retained_intron 951147-953178 (orient:+) max_ev_support = 5 # spliced_intron 951147-953178 (orient:+) max_ev_support = 1 scaffold_2 + intron 951147-953178 asmbl_24187,asmbl_24188,asmbl_24189,asmbl_24191 scaffold_2 + retained_intron 951147-953178 asmbl_24186 // Retained and Spliced Intron # retained_intron 946894-947803 (orient:+) max_ev_support = 2 # spliced_intron 946894-947803 (orient:+) max_ev_support = 2 scaffold_2 + intron 946894-947803 asmbl_24188 scaffold_2 + retained_intron 946894-947803 asmbl_24187,asmbl_24189 // Retained and Spliced Intron # retained_intron 947822-948713 (orient:+) max_ev_support = 2 # spliced_intron 947822-948713 (orient:+) max_ev_support = 2 scaffold_2 + intron 947822-948713 asmbl_24188 scaffold_2 + retained_intron 947822-948713 asmbl_24187,asmbl_24189 // Retained and Spliced Intron # retained_intron 948733-948885 (orient:+) max_ev_support = 2 # spliced_intron 948733-948885 (orient:+) max_ev_support = 2 scaffold_2 + intron 948733-948885 asmbl_24188,asmbl_24189 scaffold_2 + retained_intron 948733-948885 asmbl_24187 // Retained and Spliced Intron # retained_intron 949181-949507 (orient:+) max_ev_support = 1 # spliced_intron 949181-949507 (orient:+) max_ev_support = 2 scaffold_2 + intron 949181-949507 asmbl_24187,asmbl_24188,asmbl_24189 scaffold_2 + retained_intron 949181-949507 asmbl_24190 // Retained and Spliced Intron # retained_intron 950492-950626 (orient:+) max_ev_support = 1 # spliced_intron 950492-950626 (orient:+) max_ev_support = 1 scaffold_2 + intron 950492-950626 asmbl_24186,asmbl_24187,asmbl_24188,asmbl_24189 scaffold_2 + retained_intron 950492-950626 asmbl_24191 // Retained and Spliced Intron # retained_intron 1301947-1302080 (orient:+) max_ev_support = 3 # spliced_intron 1301947-1302080 (orient:+) max_ev_support = 3 scaffold_2 + intron 1301947-1302080 asmbl_24199 scaffold_2 + retained_intron 1301947-1302080 asmbl_24198 // Retained and Spliced Intron # retained_intron 1301947-1302291 (orient:+) max_ev_support = 3 # spliced_intron 1301947-1302291 (orient:+) max_ev_support = 3 scaffold_2 + intron 1301947-1302291 asmbl_24197 scaffold_2 + retained_intron 1301947-1302291 asmbl_24198 // Retained and Spliced Intron # retained_intron 1302136-1302291 (orient:+) max_ev_support = 3 # spliced_intron 1302136-1302291 (orient:+) max_ev_support = 3 scaffold_2 + intron 1302136-1302291 asmbl_24199 scaffold_2 + retained_intron 1302136-1302291 asmbl_24198 // Exon Skipping and Retention # skipped_exon 1301947-1302291 (orient:+) max_ev_support = 3 # retained_exon 1302081-1302135 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 1302081-1302135 asmbl_24199 scaffold_2 + intron_skips_exon 1301947-1302291 asmbl_24197 // Retained and Spliced Intron # retained_intron 1322435-1322697 (orient:+) max_ev_support = 2 # spliced_intron 1322435-1322697 (orient:+) max_ev_support = 1 scaffold_2 + intron 1322435-1322697 asmbl_24208 scaffold_2 + retained_intron 1322435-1322697 asmbl_24206,asmbl_24207 // Exon Skipping and Retention # skipped_exon 1595420-1595710 (orient:+) max_ev_support = 1 # retained_exon 1595546-1595634 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 1595546-1595634 asmbl_24233,asmbl_24236,asmbl_24237 scaffold_2 + intron_skips_exon 1595420-1595710 asmbl_24235,asmbl_24238 // Retained and Spliced Intron # retained_intron 1598188-1598295 (orient:+) max_ev_support = 1 # spliced_intron 1598188-1598295 (orient:+) max_ev_support = 2 scaffold_2 + intron 1598188-1598295 asmbl_24233,asmbl_24235,asmbl_24239,asmbl_24240 scaffold_2 + retained_intron 1598188-1598295 asmbl_24236,asmbl_24237,asmbl_24238 // Retained and Spliced Intron # retained_intron 2076731-2076944 (orient:+) max_ev_support = 3 # spliced_intron 2076731-2076944 (orient:+) max_ev_support = 1 scaffold_2 + intron 2076731-2076944 asmbl_24260 scaffold_2 + retained_intron 2076731-2076944 asmbl_24258,asmbl_24259 // Retained and Spliced Intron # retained_intron 2960170-2960333 (orient:+) max_ev_support = 3 # spliced_intron 2960170-2960333 (orient:+) max_ev_support = 2 scaffold_2 + intron 2960170-2960333 asmbl_24284 scaffold_2 + retained_intron 2960170-2960333 asmbl_24283 // Exon Skipping and Retention # skipped_exon 2986713-2987932 (orient:+) max_ev_support = 3 # retained_exon 2987706-2987819 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 2987706-2987819 asmbl_24289 scaffold_2 + intron_skips_exon 2986713-2987932 asmbl_24288 // Retained and Spliced Intron # retained_intron 3079174-3079230 (orient:+) max_ev_support = 2 # spliced_intron 3079174-3079230 (orient:+) max_ev_support = 1 scaffold_2 + intron 3079174-3079230 asmbl_24295 scaffold_2 + retained_intron 3079174-3079230 asmbl_24294 // Exon Skipping and Retention # skipped_exon 3632150-3633040 (orient:+) max_ev_support = 1 # retained_exon 3632499-3632648 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 3632499-3632648 asmbl_24312,asmbl_24315 scaffold_2 + intron_skips_exon 3632150-3633040 asmbl_24314 // Retained and Spliced Intron # retained_intron 3631902-3632007 (orient:+) max_ev_support = 1 # spliced_intron 3631902-3632007 (orient:+) max_ev_support = 1 scaffold_2 + intron 3631902-3632007 asmbl_24311,asmbl_24312,asmbl_24314,asmbl_24315 scaffold_2 + retained_intron 3631902-3632007 asmbl_24313 // Exon Skipping and Retention # skipped_exon 3898325-3899361 (orient:+) max_ev_support = 2 # retained_exon 3898797-3898886 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 3898797-3898886 asmbl_24338 scaffold_2 + intron_skips_exon 3898325-3899361 asmbl_24337 // Exon Skipping and Retention # skipped_exon 3898325-3899364 (orient:+) max_ev_support = 1 # retained_exon 3898797-3898886 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 3898797-3898886 asmbl_24338 scaffold_2 + intron_skips_exon 3898325-3899364 asmbl_24341 // Retained and Spliced Intron # retained_intron 3899965-3900066 (orient:+) max_ev_support = 1 # spliced_intron 3899965-3900066 (orient:+) max_ev_support = 2 scaffold_2 + intron 3899965-3900066 asmbl_24337,asmbl_24338,asmbl_24340 scaffold_2 + retained_intron 3899965-3900066 asmbl_24342 // Retained and Spliced Intron # retained_intron 4178724-4178813 (orient:+) max_ev_support = 1 # spliced_intron 4178724-4178813 (orient:+) max_ev_support = 2 scaffold_2 + intron 4178724-4178813 asmbl_24362 scaffold_2 + retained_intron 4178724-4178813 asmbl_24363 // Retained and Spliced Intron # retained_intron 4578060-4578717 (orient:+) max_ev_support = 3 # spliced_intron 4578060-4578717 (orient:+) max_ev_support = 2 scaffold_2 + intron 4578060-4578717 asmbl_24379,asmbl_24384,asmbl_24385 scaffold_2 + retained_intron 4578060-4578717 asmbl_24378 // Retained and Spliced Intron # retained_intron 4578467-4578717 (orient:+) max_ev_support = 3 # spliced_intron 4578467-4578717 (orient:+) max_ev_support = 1 scaffold_2 + intron 4578467-4578717 asmbl_24386 scaffold_2 + retained_intron 4578467-4578717 asmbl_24378 // Retained and Spliced Intron # retained_intron 4579215-4579828 (orient:+) max_ev_support = 2 # spliced_intron 4579215-4579828 (orient:+) max_ev_support = 2 scaffold_2 + intron 4579215-4579828 asmbl_24378,asmbl_24384,asmbl_24386 scaffold_2 + retained_intron 4579215-4579828 asmbl_24379,asmbl_24385 // Retained and Spliced Intron # retained_intron 4599512-4599633 (orient:+) max_ev_support = 1 # spliced_intron 4599512-4599633 (orient:+) max_ev_support = 2 scaffold_2 + intron 4599512-4599633 asmbl_24389 scaffold_2 + retained_intron 4599512-4599633 asmbl_24391 // Exon Skipping and Retention # skipped_exon 4624737-4626065 (orient:+) max_ev_support = 1 # retained_exon 4625159-4625170 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 4625159-4625170 asmbl_24393 scaffold_2 + intron_skips_exon 4624737-4626065 asmbl_24394 // Retained and Spliced Intron # retained_intron 4788146-4788491 (orient:+) max_ev_support = 2 # spliced_intron 4788146-4788491 (orient:+) max_ev_support = 2 scaffold_2 + intron 4788146-4788491 asmbl_24404 scaffold_2 + retained_intron 4788146-4788491 asmbl_24405,asmbl_24407 // Retained and Spliced Intron # retained_intron 4788146-4788560 (orient:+) max_ev_support = 2 # spliced_intron 4788146-4788560 (orient:+) max_ev_support = 2 scaffold_2 + intron 4788146-4788560 asmbl_24403 scaffold_2 + retained_intron 4788146-4788560 asmbl_24405,asmbl_24407 // Retained and Spliced Intron # retained_intron 4788146-4788732 (orient:+) max_ev_support = 2 # spliced_intron 4788146-4788732 (orient:+) max_ev_support = 1 scaffold_2 + intron 4788146-4788732 asmbl_24406,asmbl_24408 scaffold_2 + retained_intron 4788146-4788732 asmbl_24405,asmbl_24407 // Retained and Spliced Intron # retained_intron 5203179-5203697 (orient:+) max_ev_support = 3 # spliced_intron 5203179-5203697 (orient:+) max_ev_support = 2 scaffold_2 + intron 5203179-5203697 asmbl_24425 scaffold_2 + retained_intron 5203179-5203697 asmbl_24422,asmbl_24423,asmbl_24426,asmbl_24427 // Retained and Spliced Intron # retained_intron 5202056-5202363 (orient:+) max_ev_support = 2 # spliced_intron 5202056-5202363 (orient:+) max_ev_support = 3 scaffold_2 + intron 5202056-5202363 asmbl_24422,asmbl_24423,asmbl_24425,asmbl_24426 scaffold_2 + retained_intron 5202056-5202363 asmbl_24427 // Retained and Spliced Intron # retained_intron 5360023-5360118 (orient:+) max_ev_support = 2 # spliced_intron 5360023-5360118 (orient:+) max_ev_support = 2 scaffold_2 + intron 5360023-5360118 asmbl_24440 scaffold_2 + retained_intron 5360023-5360118 asmbl_24441 // Retained and Spliced Intron # retained_intron 5440602-5440687 (orient:+) max_ev_support = 2 # spliced_intron 5440602-5440687 (orient:+) max_ev_support = 2 scaffold_2 + intron 5440602-5440687 asmbl_24445 scaffold_2 + retained_intron 5440602-5440687 asmbl_24444 // Retained and Spliced Intron # retained_intron 5440602-5440711 (orient:+) max_ev_support = 2 # spliced_intron 5440602-5440711 (orient:+) max_ev_support = 1 scaffold_2 + intron 5440602-5440711 asmbl_24448 scaffold_2 + retained_intron 5440602-5440711 asmbl_24444 // Retained and Spliced Intron # retained_intron 5716839-5716996 (orient:+) max_ev_support = 3 # spliced_intron 5716839-5716996 (orient:+) max_ev_support = 2 scaffold_2 + intron 5716839-5716996 asmbl_24459,asmbl_24461 scaffold_2 + retained_intron 5716839-5716996 asmbl_24458 // Retained and Spliced Intron # retained_intron 6520144-6520227 (orient:+) max_ev_support = 2 # spliced_intron 6520144-6520227 (orient:+) max_ev_support = 3 scaffold_2 + intron 6520144-6520227 asmbl_24498,asmbl_24499,asmbl_24500,asmbl_24501,asmbl_24503 scaffold_2 + retained_intron 6520144-6520227 asmbl_24502 // Retained and Spliced Intron # retained_intron 6766206-6766429 (orient:+) max_ev_support = 2 # spliced_intron 6766206-6766429 (orient:+) max_ev_support = 3 scaffold_2 + intron 6766206-6766429 asmbl_24517,asmbl_24520,asmbl_24521,asmbl_24522,asmbl_24526 scaffold_2 + retained_intron 6766206-6766429 asmbl_24518 // Retained and Spliced Intron # retained_intron 6766622-6768034 (orient:+) max_ev_support = 2 # spliced_intron 6766622-6768034 (orient:+) max_ev_support = 3 scaffold_2 + intron 6766622-6768034 asmbl_24517,asmbl_24521 scaffold_2 + retained_intron 6766622-6768034 asmbl_24518,asmbl_24520,asmbl_24522,asmbl_24526 // Retained and Spliced Intron # retained_intron 6768217-6768941 (orient:+) max_ev_support = 2 # spliced_intron 6768217-6768941 (orient:+) max_ev_support = 3 scaffold_2 + intron 6768217-6768941 asmbl_24517,asmbl_24521 scaffold_2 + retained_intron 6768217-6768941 asmbl_24518,asmbl_24520,asmbl_24522,asmbl_24526 // Retained and Spliced Intron # retained_intron 6763081-6764405 (orient:+) max_ev_support = 2 # spliced_intron 6763081-6764405 (orient:+) max_ev_support = 3 scaffold_2 + intron 6763081-6764405 asmbl_24517,asmbl_24522,asmbl_24523,asmbl_24526 scaffold_2 + retained_intron 6763081-6764405 asmbl_24520,asmbl_24521,asmbl_24524,asmbl_24525 // Retained and Spliced Intron # retained_intron 6765125-6765361 (orient:+) max_ev_support = 2 # spliced_intron 6765125-6765361 (orient:+) max_ev_support = 3 scaffold_2 + intron 6765125-6765361 asmbl_24517,asmbl_24522 scaffold_2 + retained_intron 6765125-6765361 asmbl_24520,asmbl_24521,asmbl_24523,asmbl_24524,asmbl_24525,asmbl_24526 // Retained and Spliced Intron # retained_intron 6765473-6765659 (orient:+) max_ev_support = 2 # spliced_intron 6765473-6765659 (orient:+) max_ev_support = 3 scaffold_2 + intron 6765473-6765659 asmbl_24517,asmbl_24520,asmbl_24521,asmbl_24522,asmbl_24526 scaffold_2 + retained_intron 6765473-6765659 asmbl_24523,asmbl_24524,asmbl_24525 // Exon Skipping and Retention # skipped_exon 6899167-6900291 (orient:+) max_ev_support = 1 # retained_exon 6899410-6899421 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 6899410-6899421 asmbl_24537,asmbl_24540 scaffold_2 + intron_skips_exon 6899167-6900291 asmbl_24541,asmbl_24542,asmbl_24543,asmbl_24544,asmbl_24545,asmbl_24546,asmbl_24547 // Exon Skipping and Retention # skipped_exon 6900364-6901550 (orient:+) max_ev_support = 3 # retained_exon 6900682-6900759 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 6900682-6900759 asmbl_24537,asmbl_24539,asmbl_24541,asmbl_24544,asmbl_24546,asmbl_24547 scaffold_2 + intron_skips_exon 6900364-6901550 asmbl_24530,asmbl_24540,asmbl_24542,asmbl_24545 // Exon Skipping and Retention # skipped_exon 7042421-7042836 (orient:+) max_ev_support = 2 # retained_exon 7042599-7042724 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 7042599-7042724 asmbl_24553,asmbl_24554,asmbl_24555 scaffold_2 + intron_skips_exon 7042421-7042836 asmbl_24551,asmbl_24552 // Retained and Spliced Intron # retained_intron 7134503-7134669 (orient:+) max_ev_support = 1 # spliced_intron 7134503-7134669 (orient:+) max_ev_support = 2 scaffold_2 + intron 7134503-7134669 asmbl_24561 scaffold_2 + retained_intron 7134503-7134669 asmbl_24562 // Retained and Spliced Intron # retained_intron 7220195-7220310 (orient:+) max_ev_support = 3 # spliced_intron 7220195-7220310 (orient:+) max_ev_support = 2 scaffold_2 + intron 7220195-7220310 asmbl_24580,asmbl_24581 scaffold_2 + retained_intron 7220195-7220310 asmbl_24570,asmbl_24571,asmbl_24575,asmbl_24582 // Retained and Spliced Intron # retained_intron 7218817-7218918 (orient:+) max_ev_support = 3 # spliced_intron 7218817-7218918 (orient:+) max_ev_support = 3 scaffold_2 + intron 7218817-7218918 asmbl_24570,asmbl_24575,asmbl_24580,asmbl_24581,asmbl_24582 scaffold_2 + retained_intron 7218817-7218918 asmbl_24571 // Retained and Spliced Intron # retained_intron 7214953-7215092 (orient:+) max_ev_support = 3 # spliced_intron 7214953-7215092 (orient:+) max_ev_support = 3 scaffold_2 + intron 7214953-7215092 asmbl_24574,asmbl_24579,asmbl_24581 scaffold_2 + retained_intron 7214953-7215092 asmbl_24573 // Exon Skipping and Retention # skipped_exon 7214724-7216790 (orient:+) max_ev_support = 3 # retained_exon 7214806-7215153 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7214806-7214952,7215093-7215153 asmbl_24574,asmbl_24581 scaffold_2 + intron_skips_exon 7214724-7216790 asmbl_24572 // Retained and Spliced Intron # retained_intron 7240470-7240767 (orient:+) max_ev_support = 2 # spliced_intron 7240470-7240767 (orient:+) max_ev_support = 2 scaffold_2 + intron 7240470-7240767 asmbl_24584,asmbl_24585,asmbl_24586,asmbl_24587,asmbl_24588,asmbl_24589,asmbl_24590,asmbl_24591 scaffold_2 + retained_intron 7240470-7240767 asmbl_24583 // Retained and Spliced Intron # retained_intron 7240923-7241276 (orient:+) max_ev_support = 1 # spliced_intron 7240923-7241276 (orient:+) max_ev_support = 2 scaffold_2 + intron 7240923-7241276 asmbl_24584,asmbl_24586,asmbl_24587,asmbl_24588,asmbl_24590,asmbl_24591 scaffold_2 + retained_intron 7240923-7241276 asmbl_24585,asmbl_24589 // Retained and Spliced Intron # retained_intron 7241982-7242169 (orient:+) max_ev_support = 1 # spliced_intron 7241982-7242169 (orient:+) max_ev_support = 2 scaffold_2 + intron 7241982-7242169 asmbl_24584,asmbl_24588,asmbl_24589,asmbl_24591 scaffold_2 + retained_intron 7241982-7242169 asmbl_24585,asmbl_24587,asmbl_24590 // Retained and Spliced Intron # retained_intron 7242608-7242683 (orient:+) max_ev_support = 1 # spliced_intron 7242608-7242683 (orient:+) max_ev_support = 2 scaffold_2 + intron 7242608-7242683 asmbl_24584,asmbl_24588,asmbl_24589,asmbl_24591 scaffold_2 + retained_intron 7242608-7242683 asmbl_24585,asmbl_24587,asmbl_24590 // Retained and Spliced Intron # retained_intron 7241458-7241554 (orient:+) max_ev_support = 1 # spliced_intron 7241458-7241554 (orient:+) max_ev_support = 2 scaffold_2 + intron 7241458-7241554 asmbl_24584,asmbl_24585,asmbl_24589,asmbl_24590 scaffold_2 + retained_intron 7241458-7241554 asmbl_24586,asmbl_24587,asmbl_24588 // Retained and Spliced Intron # retained_intron 7241458-7241574 (orient:+) max_ev_support = 1 # spliced_intron 7241458-7241574 (orient:+) max_ev_support = 1 scaffold_2 + intron 7241458-7241574 asmbl_24591 scaffold_2 + retained_intron 7241458-7241574 asmbl_24586,asmbl_24587,asmbl_24588 // Retained and Spliced Intron # retained_intron 7241660-7241753 (orient:+) max_ev_support = 1 # spliced_intron 7241660-7241753 (orient:+) max_ev_support = 2 scaffold_2 + intron 7241660-7241753 asmbl_24584,asmbl_24585,asmbl_24587,asmbl_24588,asmbl_24589,asmbl_24590,asmbl_24591 scaffold_2 + retained_intron 7241660-7241753 asmbl_24586 // Retained and Spliced Intron # retained_intron 7323594-7324003 (orient:+) max_ev_support = 3 # spliced_intron 7323594-7324003 (orient:+) max_ev_support = 1 scaffold_2 + intron 7323594-7324003 asmbl_24599 scaffold_2 + retained_intron 7323594-7324003 asmbl_24596,asmbl_24598 // Retained and Spliced Intron # retained_intron 7324282-7325889 (orient:+) max_ev_support = 5 # spliced_intron 7324282-7325889 (orient:+) max_ev_support = 2 scaffold_2 + intron 7324282-7325889 asmbl_24598,asmbl_24599 scaffold_2 + retained_intron 7324282-7325889 asmbl_24596 // Retained and Spliced Intron # retained_intron 7324810-7325889 (orient:+) max_ev_support = 3 # spliced_intron 7324810-7325889 (orient:+) max_ev_support = 3 scaffold_2 + intron 7324810-7325889 asmbl_24597 scaffold_2 + retained_intron 7324810-7325889 asmbl_24596 // Retained and Spliced Intron # retained_intron 7776424-7777128 (orient:+) max_ev_support = 2 # spliced_intron 7776424-7777128 (orient:+) max_ev_support = 3 scaffold_2 + intron 7776424-7777128 asmbl_24602 scaffold_2 + retained_intron 7776424-7777128 asmbl_24603 // Exon Skipping and Retention # skipped_exon 7781621-7782467 (orient:+) max_ev_support = 1 # retained_exon 7782119-7782194 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7782119-7782194 asmbl_24605,asmbl_24608,asmbl_24611,asmbl_24613 scaffold_2 + intron_skips_exon 7781621-7782467 asmbl_24606,asmbl_24607,asmbl_24612 // Retained and Spliced Intron # retained_intron 7782690-7783100 (orient:+) max_ev_support = 4 # spliced_intron 7782690-7783100 (orient:+) max_ev_support = 3 scaffold_2 + intron 7782690-7783100 asmbl_24606,asmbl_24607,asmbl_24608,asmbl_24613 scaffold_2 + retained_intron 7782690-7783100 asmbl_24605 // Retained and Spliced Intron # retained_intron 7782690-7785425 (orient:+) max_ev_support = 8 # spliced_intron 7782690-7785425 (orient:+) max_ev_support = 2 scaffold_2 + intron 7782690-7785425 asmbl_24609,asmbl_24611,asmbl_24612 scaffold_2 + retained_intron 7782690-7785425 asmbl_24605 // Retained and Spliced Intron # retained_intron 7783180-7784364 (orient:+) max_ev_support = 5 # spliced_intron 7783180-7784364 (orient:+) max_ev_support = 3 scaffold_2 + intron 7783180-7784364 asmbl_24607,asmbl_24608 scaffold_2 + retained_intron 7783180-7784364 asmbl_24605,asmbl_24606 // Retained and Spliced Intron # retained_intron 7781346-7781544 (orient:+) max_ev_support = 2 # spliced_intron 7781346-7781544 (orient:+) max_ev_support = 1 scaffold_2 + intron 7781346-7781544 asmbl_24612 scaffold_2 + retained_intron 7781346-7781544 asmbl_24606,asmbl_24607,asmbl_24610 // Exon Skipping and Retention # skipped_exon 7782690-7785425 (orient:+) max_ev_support = 2 # retained_exon 7783101-7783179 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 7783101-7783179 asmbl_24607 scaffold_2 + intron_skips_exon 7782690-7785425 asmbl_24609,asmbl_24611,asmbl_24612 // Retained and Spliced Intron # retained_intron 7782195-7782467 (orient:+) max_ev_support = 2 # spliced_intron 7782195-7782467 (orient:+) max_ev_support = 3 scaffold_2 + intron 7782195-7782467 asmbl_24605,asmbl_24608,asmbl_24611,asmbl_24613 scaffold_2 + retained_intron 7782195-7782467 asmbl_24609 // Exon Skipping and Retention # skipped_exon 7781346-7782118 (orient:+) max_ev_support = 3 # retained_exon 7781545-7781620 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 7781545-7781620 asmbl_24612 scaffold_2 + intron_skips_exon 7781346-7782118 asmbl_24605,asmbl_24608,asmbl_24609,asmbl_24611,asmbl_24613 // Exon Skipping and Retention # skipped_exon 7880738-7881679 (orient:+) max_ev_support = 2 # retained_exon 7881107-7881454 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 7881107-7881203,7881367-7881454 asmbl_24617,asmbl_24623 scaffold_2 + intron_skips_exon 7880738-7881679 asmbl_24622 // Retained and Spliced Intron # retained_intron 7876589-7876880 (orient:+) max_ev_support = 2 # spliced_intron 7876589-7876880 (orient:+) max_ev_support = 3 scaffold_2 + intron 7876589-7876880 asmbl_24618,asmbl_24621,asmbl_24622,asmbl_24623,asmbl_24624 scaffold_2 + retained_intron 7876589-7876880 asmbl_24620 // Retained and Spliced Intron # retained_intron 7876359-7876445 (orient:+) max_ev_support = 2 # spliced_intron 7876359-7876445 (orient:+) max_ev_support = 3 scaffold_2 + intron 7876359-7876445 asmbl_24618,asmbl_24622,asmbl_24623,asmbl_24624 scaffold_2 + retained_intron 7876359-7876445 asmbl_24621 // Retained and Spliced Intron # retained_intron 7894830-7894910 (orient:+) max_ev_support = 3 # spliced_intron 7894830-7894910 (orient:+) max_ev_support = 3 scaffold_2 + intron 7894830-7894910 asmbl_24625,asmbl_24633 scaffold_2 + retained_intron 7894830-7894910 asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24629,asmbl_24630 // Retained and Spliced Intron # retained_intron 7895023-7895182 (orient:+) max_ev_support = 2 # spliced_intron 7895023-7895182 (orient:+) max_ev_support = 3 scaffold_2 + intron 7895023-7895182 asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24633 scaffold_2 + retained_intron 7895023-7895182 asmbl_24630 // Retained and Spliced Intron # retained_intron 7895028-7895182 (orient:+) max_ev_support = 2 # spliced_intron 7895028-7895182 (orient:+) max_ev_support = 2 scaffold_2 + intron 7895028-7895182 asmbl_24629 scaffold_2 + retained_intron 7895028-7895182 asmbl_24630 // Retained and Spliced Intron # retained_intron 7892477-7892601 (orient:+) max_ev_support = 2 # spliced_intron 7892477-7892601 (orient:+) max_ev_support = 2 scaffold_2 + intron 7892477-7892601 asmbl_24625,asmbl_24626,asmbl_24627,asmbl_24628,asmbl_24633 scaffold_2 + retained_intron 7892477-7892601 asmbl_24631 // Retained and Spliced Intron # retained_intron 7938372-7939699 (orient:+) max_ev_support = 4 # spliced_intron 7938372-7939699 (orient:+) max_ev_support = 3 scaffold_2 + intron 7938372-7939699 asmbl_24635,asmbl_24636,asmbl_24639 scaffold_2 + retained_intron 7938372-7939699 asmbl_24634 // Retained and Spliced Intron # retained_intron 7936735-7936885 (orient:+) max_ev_support = 2 # spliced_intron 7936735-7936885 (orient:+) max_ev_support = 3 scaffold_2 + intron 7936735-7936885 asmbl_24634,asmbl_24635 scaffold_2 + retained_intron 7936735-7936885 asmbl_24637 // Retained and Spliced Intron # retained_intron 7988750-7988928 (orient:+) max_ev_support = 3 # spliced_intron 7988750-7988928 (orient:+) max_ev_support = 3 scaffold_2 + intron 7988750-7988928 asmbl_24640 scaffold_2 + retained_intron 7988750-7988928 asmbl_24641 // Retained and Spliced Intron # retained_intron 8062385-8062907 (orient:+) max_ev_support = 2 # spliced_intron 8062385-8062907 (orient:+) max_ev_support = 2 scaffold_2 + intron 8062385-8062907 asmbl_24644 scaffold_2 + retained_intron 8062385-8062907 asmbl_24645 // Retained and Spliced Intron # retained_intron 8063944-8064058 (orient:+) max_ev_support = 2 # spliced_intron 8063944-8064058 (orient:+) max_ev_support = 2 scaffold_2 + intron 8063944-8064058 asmbl_24644 scaffold_2 + retained_intron 8063944-8064058 asmbl_24646 // Retained and Spliced Intron # retained_intron 8064152-8064334 (orient:+) max_ev_support = 2 # spliced_intron 8064152-8064334 (orient:+) max_ev_support = 2 scaffold_2 + intron 8064152-8064334 asmbl_24644 scaffold_2 + retained_intron 8064152-8064334 asmbl_24646 // Exon Skipping and Retention # skipped_exon 8191219-8193191 (orient:+) max_ev_support = 2 # retained_exon 8192753-8192867 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 8192753-8192867 asmbl_24652 scaffold_2 + intron_skips_exon 8191219-8193191 asmbl_24651 // Retained and Spliced Intron # retained_intron 8302850-8304172 (orient:+) max_ev_support = 3 # spliced_intron 8302850-8304172 (orient:+) max_ev_support = 2 scaffold_2 + intron 8302850-8304172 asmbl_24663,asmbl_24665 scaffold_2 + retained_intron 8302850-8304172 asmbl_24660,asmbl_24661 // Retained and Spliced Intron # retained_intron 8299359-8300642 (orient:+) max_ev_support = 1 # spliced_intron 8299359-8300642 (orient:+) max_ev_support = 2 scaffold_2 + intron 8299359-8300642 asmbl_24660,asmbl_24662,asmbl_24663 scaffold_2 + retained_intron 8299359-8300642 asmbl_24661,asmbl_24664 // Retained and Spliced Intron # retained_intron 8322079-8322426 (orient:+) max_ev_support = 2 # spliced_intron 8322079-8322426 (orient:+) max_ev_support = 2 scaffold_2 + intron 8322079-8322426 asmbl_24671,asmbl_24672 scaffold_2 + retained_intron 8322079-8322426 asmbl_24674 // Retained and Spliced Intron # retained_intron 8857714-8857736 (orient:+) max_ev_support = 1 # spliced_intron 8857714-8857736 (orient:+) max_ev_support = 1 scaffold_2 + intron 8857714-8857736 asmbl_24683 scaffold_2 + retained_intron 8857714-8857736 asmbl_24682 // Retained and Spliced Intron # retained_intron 8875113-8876256 (orient:+) max_ev_support = 1 # spliced_intron 8875113-8876256 (orient:+) max_ev_support = 1 scaffold_2 + intron 8875113-8876256 asmbl_24690,asmbl_24692 scaffold_2 + retained_intron 8875113-8876256 asmbl_24687,asmbl_24688,asmbl_24689,asmbl_24691 // Retained and Spliced Intron # retained_intron 8874291-8874368 (orient:+) max_ev_support = 1 # spliced_intron 8874291-8874368 (orient:+) max_ev_support = 1 scaffold_2 + intron 8874291-8874368 asmbl_24690 scaffold_2 + retained_intron 8874291-8874368 asmbl_24689,asmbl_24691,asmbl_24692 // Retained and Spliced Intron # retained_intron 8874291-8874378 (orient:+) max_ev_support = 1 # spliced_intron 8874291-8874378 (orient:+) max_ev_support = 2 scaffold_2 + intron 8874291-8874378 asmbl_24687,asmbl_24688 scaffold_2 + retained_intron 8874291-8874378 asmbl_24689,asmbl_24691,asmbl_24692 // Exon Skipping and Retention # skipped_exon 9159684-9161313 (orient:+) max_ev_support = 3 # retained_exon 9160014-9160085 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 9160014-9160085 asmbl_24706 scaffold_2 + intron_skips_exon 9159684-9161313 asmbl_24705,asmbl_24707 // Retained and Spliced Intron # retained_intron 9295733-9295827 (orient:+) max_ev_support = 1 # spliced_intron 9295733-9295827 (orient:+) max_ev_support = 2 scaffold_2 + intron 9295733-9295827 asmbl_24713 scaffold_2 + retained_intron 9295733-9295827 asmbl_24714 // Retained and Spliced Intron # retained_intron 9790539-9790880 (orient:+) max_ev_support = 2 # spliced_intron 9790539-9790880 (orient:+) max_ev_support = 2 scaffold_2 + intron 9790539-9790880 asmbl_24720,asmbl_24722,asmbl_24723,asmbl_24724,asmbl_24725,asmbl_24726 scaffold_2 + retained_intron 9790539-9790880 asmbl_24721 // Retained and Spliced Intron # retained_intron 9789776-9789962 (orient:+) max_ev_support = 1 # spliced_intron 9789776-9789962 (orient:+) max_ev_support = 2 scaffold_2 + intron 9789776-9789962 asmbl_24720,asmbl_24723,asmbl_24725,asmbl_24726 scaffold_2 + retained_intron 9789776-9789962 asmbl_24722,asmbl_24724 // Retained and Spliced Intron # retained_intron 9790090-9790374 (orient:+) max_ev_support = 1 # spliced_intron 9790090-9790374 (orient:+) max_ev_support = 2 scaffold_2 + intron 9790090-9790374 asmbl_24720,asmbl_24723,asmbl_24725,asmbl_24726 scaffold_2 + retained_intron 9790090-9790374 asmbl_24722,asmbl_24724 // Retained and Spliced Intron # retained_intron 9791343-9791807 (orient:+) max_ev_support = 1 # spliced_intron 9791343-9791807 (orient:+) max_ev_support = 2 scaffold_2 + intron 9791343-9791807 asmbl_24720,asmbl_24721,asmbl_24722,asmbl_24725,asmbl_24726 scaffold_2 + retained_intron 9791343-9791807 asmbl_24723,asmbl_24724 // Retained and Spliced Intron # retained_intron 9791919-9792309 (orient:+) max_ev_support = 1 # spliced_intron 9791919-9792309 (orient:+) max_ev_support = 2 scaffold_2 + intron 9791919-9792309 asmbl_24720,asmbl_24721,asmbl_24722,asmbl_24725,asmbl_24726 scaffold_2 + retained_intron 9791919-9792309 asmbl_24723,asmbl_24724 // Retained and Spliced Intron # retained_intron 9788213-9788312 (orient:+) max_ev_support = 1 # spliced_intron 9788213-9788312 (orient:+) max_ev_support = 2 scaffold_2 + intron 9788213-9788312 asmbl_24720,asmbl_24722,asmbl_24723,asmbl_24724,asmbl_24725 scaffold_2 + retained_intron 9788213-9788312 asmbl_24726 // Exon Skipping and Retention # skipped_exon 10135861-10137642 (orient:+) max_ev_support = 2 # retained_exon 10136911-10137082 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10136911-10137082 asmbl_24734,asmbl_24736 scaffold_2 + intron_skips_exon 10135861-10137642 asmbl_24735 // Exon Skipping and Retention # skipped_exon 10137083-10139477 (orient:+) max_ev_support = 2 # retained_exon 10137643-10137814 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10137643-10137814 asmbl_24735,asmbl_24736 scaffold_2 + intron_skips_exon 10137083-10139477 asmbl_24734 // Exon Skipping and Retention # skipped_exon 10393641-10394971 (orient:+) max_ev_support = 1 # retained_exon 10394585-10394676 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 10394585-10394676 asmbl_24740 scaffold_2 + intron_skips_exon 10393641-10394971 asmbl_24739 // Retained and Spliced Intron # retained_intron 10655085-10655168 (orient:+) max_ev_support = 1 # spliced_intron 10655085-10655168 (orient:+) max_ev_support = 2 scaffold_2 + intron 10655085-10655168 asmbl_24749,asmbl_24750 scaffold_2 + retained_intron 10655085-10655168 asmbl_24751 // Retained and Spliced Intron # retained_intron 10719654-10719730 (orient:+) max_ev_support = 2 # spliced_intron 10719654-10719730 (orient:+) max_ev_support = 3 scaffold_2 + intron 10719654-10719730 asmbl_24761 scaffold_2 + retained_intron 10719654-10719730 asmbl_24762,asmbl_24763 // Retained and Spliced Intron # retained_intron 10725827-10726142 (orient:+) max_ev_support = 1 # spliced_intron 10725827-10726142 (orient:+) max_ev_support = 2 scaffold_2 + intron 10725827-10726142 asmbl_24765 scaffold_2 + retained_intron 10725827-10726142 asmbl_24766,asmbl_24767 // Exon Skipping and Retention # skipped_exon 10878302-10880126 (orient:+) max_ev_support = 2 # retained_exon 10878680-10878697 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 10878680-10878697 asmbl_24771,asmbl_24778 scaffold_2 + intron_skips_exon 10878302-10880126 asmbl_24777 // Exon Skipping and Retention # skipped_exon 11258679-11259299 (orient:+) max_ev_support = 1 # retained_exon 11258793-11258873 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11258793-11258873 asmbl_24782,asmbl_24783 scaffold_2 + intron_skips_exon 11258679-11259299 asmbl_24784 // Exon Skipping and Retention # skipped_exon 11256046-11256587 (orient:+) max_ev_support = 2 # retained_exon 11256406-11256473 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11256406-11256473 asmbl_24783,asmbl_24784 scaffold_2 + intron_skips_exon 11256046-11256587 asmbl_24782 // Retained and Spliced Intron # retained_intron 11610034-11610204 (orient:+) max_ev_support = 3 # spliced_intron 11610034-11610204 (orient:+) max_ev_support = 2 scaffold_2 + intron 11610034-11610204 asmbl_24796,asmbl_24799 scaffold_2 + retained_intron 11610034-11610204 asmbl_24794,asmbl_24795,asmbl_24798 // Exon Skipping and Retention # skipped_exon 11603158-11605993 (orient:+) max_ev_support = 3 # retained_exon 11603471-11603482 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 11603471-11603482 asmbl_24798,asmbl_24799 scaffold_2 + intron_skips_exon 11603158-11605993 asmbl_24794,asmbl_24795,asmbl_24796 // Retained and Spliced Intron # retained_intron 11668002-11668168 (orient:+) max_ev_support = 1 # spliced_intron 11668002-11668168 (orient:+) max_ev_support = 2 scaffold_2 + intron 11668002-11668168 asmbl_24800 scaffold_2 + retained_intron 11668002-11668168 asmbl_24802 // Exon Skipping and Retention # skipped_exon 12352011-12354155 (orient:+) max_ev_support = 1 # retained_exon 12352617-12352681 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 12352617-12352681 asmbl_24821 scaffold_2 + intron_skips_exon 12352011-12354155 asmbl_24822 // Exon Skipping and Retention # skipped_exon 12349678-12352616 (orient:+) max_ev_support = 2 # retained_exon 12351946-12352010 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 12351946-12352010 asmbl_24822 scaffold_2 + intron_skips_exon 12349678-12352616 asmbl_24821 // Retained and Spliced Intron # retained_intron 13064373-13064567 (orient:+) max_ev_support = 4 # spliced_intron 13064373-13064567 (orient:+) max_ev_support = 3 scaffold_2 + intron 13064373-13064567 asmbl_24844,asmbl_24845,asmbl_24846 scaffold_2 + retained_intron 13064373-13064567 asmbl_24843 // Retained and Spliced Intron # retained_intron 13064806-13065021 (orient:+) max_ev_support = 3 # spliced_intron 13064806-13065021 (orient:+) max_ev_support = 2 scaffold_2 + intron 13064806-13065021 asmbl_24845 scaffold_2 + retained_intron 13064806-13065021 asmbl_24844,asmbl_24846 // Retained and Spliced Intron # retained_intron 13063387-13063523 (orient:+) max_ev_support = 1 # spliced_intron 13063387-13063523 (orient:+) max_ev_support = 3 scaffold_2 + intron 13063387-13063523 asmbl_24844,asmbl_24845,asmbl_24847 scaffold_2 + retained_intron 13063387-13063523 asmbl_24846 // Retained and Spliced Intron # retained_intron 13330421-13330492 (orient:+) max_ev_support = 2 # spliced_intron 13330421-13330492 (orient:+) max_ev_support = 2 scaffold_2 + intron 13330421-13330492 asmbl_24862,asmbl_24866 scaffold_2 + retained_intron 13330421-13330492 asmbl_24863,asmbl_24864 // Retained and Spliced Intron # retained_intron 13330650-13331324 (orient:+) max_ev_support = 2 # spliced_intron 13330650-13331324 (orient:+) max_ev_support = 2 scaffold_2 + intron 13330650-13331324 asmbl_24862,asmbl_24864 scaffold_2 + retained_intron 13330650-13331324 asmbl_24863,asmbl_24866 // Retained and Spliced Intron # retained_intron 13397328-13397546 (orient:+) max_ev_support = 3 # spliced_intron 13397328-13397546 (orient:+) max_ev_support = 2 scaffold_2 + intron 13397328-13397546 asmbl_24874,asmbl_24878,asmbl_24879 scaffold_2 + retained_intron 13397328-13397546 asmbl_24873,asmbl_24876,asmbl_24877 // Retained and Spliced Intron # retained_intron 13397950-13398180 (orient:+) max_ev_support = 3 # spliced_intron 13397950-13398180 (orient:+) max_ev_support = 2 scaffold_2 + intron 13397950-13398180 asmbl_24874,asmbl_24876 scaffold_2 + retained_intron 13397950-13398180 asmbl_24873,asmbl_24878 // Retained and Spliced Intron # retained_intron 13401811-13401905 (orient:+) max_ev_support = 3 # spliced_intron 13401811-13401905 (orient:+) max_ev_support = 2 scaffold_2 + intron 13401811-13401905 asmbl_24882 scaffold_2 + retained_intron 13401811-13401905 asmbl_24881 // Retained and Spliced Intron # retained_intron 13403024-13403216 (orient:+) max_ev_support = 3 # spliced_intron 13403024-13403216 (orient:+) max_ev_support = 3 scaffold_2 + intron 13403024-13403216 asmbl_24883 scaffold_2 + retained_intron 13403024-13403216 asmbl_24884 // Retained and Spliced Intron # retained_intron 13894429-13894871 (orient:+) max_ev_support = 2 # spliced_intron 13894429-13894871 (orient:+) max_ev_support = 3 scaffold_2 + intron 13894429-13894871 asmbl_24893 scaffold_2 + retained_intron 13894429-13894871 asmbl_24894 // Retained and Spliced Intron # retained_intron 14021377-14021829 (orient:+) max_ev_support = 3 # spliced_intron 14021377-14021829 (orient:+) max_ev_support = 3 scaffold_2 + intron 14021377-14021829 asmbl_24902,asmbl_24904 scaffold_2 + retained_intron 14021377-14021829 asmbl_24903 // Retained and Spliced Intron # retained_intron 14021578-14021829 (orient:+) max_ev_support = 1 # spliced_intron 14021578-14021829 (orient:+) max_ev_support = 1 scaffold_2 + intron 14021578-14021829 asmbl_24901,asmbl_24905 scaffold_2 + retained_intron 14021578-14021829 asmbl_24903 // Exon Skipping and Retention # skipped_exon 14276152-14276549 (orient:+) max_ev_support = 1 # retained_exon 14276258-14276384 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14276258-14276384 asmbl_24926,asmbl_24933 scaffold_2 + intron_skips_exon 14276152-14276549 asmbl_24928 // Retained and Spliced Intron # retained_intron 14276152-14276257 (orient:+) max_ev_support = 1 # spliced_intron 14276152-14276257 (orient:+) max_ev_support = 2 scaffold_2 + intron 14276152-14276257 asmbl_24926,asmbl_24933 scaffold_2 + retained_intron 14276152-14276257 asmbl_24927,asmbl_24929,asmbl_24932,asmbl_24934 // Retained and Spliced Intron # retained_intron 14279595-14279835 (orient:+) max_ev_support = 1 # spliced_intron 14279595-14279835 (orient:+) max_ev_support = 1 scaffold_2 + intron 14279595-14279835 asmbl_24926,asmbl_24928,asmbl_24929,asmbl_24931 scaffold_2 + retained_intron 14279595-14279835 asmbl_24927,asmbl_24930 // Exon Skipping and Retention # skipped_exon 14271302-14274032 (orient:+) max_ev_support = 2 # retained_exon 14273093-14273221 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 14273093-14273221 asmbl_24928,asmbl_24933 scaffold_2 + intron_skips_exon 14271302-14274032 asmbl_24926,asmbl_24927,asmbl_24932 // Retained and Spliced Intron # retained_intron 14278868-14278991 (orient:+) max_ev_support = 1 # spliced_intron 14278868-14278991 (orient:+) max_ev_support = 1 scaffold_2 + intron 14278868-14278991 asmbl_24934 scaffold_2 + retained_intron 14278868-14278991 asmbl_24932,asmbl_24935 // Retained and Spliced Intron # retained_intron 14277290-14277855 (orient:+) max_ev_support = 1 # spliced_intron 14277290-14277855 (orient:+) max_ev_support = 1 scaffold_2 + intron 14277290-14277855 asmbl_24926,asmbl_24927,asmbl_24928,asmbl_24929,asmbl_24930,asmbl_24932,asmbl_24934 scaffold_2 + retained_intron 14277290-14277855 asmbl_24935 // Retained and Spliced Intron # retained_intron 14361444-14361522 (orient:+) max_ev_support = 2 # spliced_intron 14361444-14361522 (orient:+) max_ev_support = 2 scaffold_2 + intron 14361444-14361522 asmbl_24949,asmbl_24952 scaffold_2 + retained_intron 14361444-14361522 asmbl_24950 // Retained and Spliced Intron # retained_intron 14360465-14360586 (orient:+) max_ev_support = 1 # spliced_intron 14360465-14360586 (orient:+) max_ev_support = 2 scaffold_2 + intron 14360465-14360586 asmbl_24949,asmbl_24950 scaffold_2 + retained_intron 14360465-14360586 asmbl_24952 // Exon Skipping and Retention # skipped_exon 14391396-14392464 (orient:+) max_ev_support = 2 # retained_exon 14391844-14391978 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14391844-14391978 asmbl_24956,asmbl_24958 scaffold_2 + intron_skips_exon 14391396-14392464 asmbl_24957 // Retained and Spliced Intron # retained_intron 14503777-14503884 (orient:+) max_ev_support = 1 # spliced_intron 14503777-14503884 (orient:+) max_ev_support = 2 scaffold_2 + intron 14503777-14503884 asmbl_24968 scaffold_2 + retained_intron 14503777-14503884 asmbl_24969 // Retained and Spliced Intron # retained_intron 14560511-14560687 (orient:+) max_ev_support = 2 # spliced_intron 14560511-14560687 (orient:+) max_ev_support = 1 scaffold_2 + intron 14560511-14560687 asmbl_24982,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14560511-14560687 asmbl_24981 // Retained and Spliced Intron # retained_intron 14560804-14561388 (orient:+) max_ev_support = 2 # spliced_intron 14560804-14561388 (orient:+) max_ev_support = 1 scaffold_2 + intron 14560804-14561388 asmbl_24982,asmbl_24983,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14560804-14561388 asmbl_24981 // Retained and Spliced Intron # retained_intron 14561522-14561619 (orient:+) max_ev_support = 2 # spliced_intron 14561522-14561619 (orient:+) max_ev_support = 1 scaffold_2 + intron 14561522-14561619 asmbl_24982,asmbl_24983,asmbl_24984,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14561522-14561619 asmbl_24981 // Exon Skipping and Retention # skipped_exon 14548735-14549730 (orient:+) max_ev_support = 1 # retained_exon 14548889-14549008 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 14548889-14549008 asmbl_24982 scaffold_2 + intron_skips_exon 14548735-14549730 asmbl_24989 // Retained and Spliced Intron # retained_intron 14560203-14560372 (orient:+) max_ev_support = 1 # spliced_intron 14560203-14560372 (orient:+) max_ev_support = 1 scaffold_2 + intron 14560203-14560372 asmbl_24982,asmbl_24985,asmbl_24986,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14560203-14560372 asmbl_24984 // Retained and Spliced Intron # retained_intron 14559023-14559185 (orient:+) max_ev_support = 1 # spliced_intron 14559023-14559185 (orient:+) max_ev_support = 1 scaffold_2 + intron 14559023-14559185 asmbl_24982,asmbl_24986,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14559023-14559185 asmbl_24985 // Retained and Spliced Intron # retained_intron 14556531-14556641 (orient:+) max_ev_support = 1 # spliced_intron 14556531-14556641 (orient:+) max_ev_support = 1 scaffold_2 + intron 14556531-14556641 asmbl_24982,asmbl_24987,asmbl_24989 scaffold_2 + retained_intron 14556531-14556641 asmbl_24986 // Retained and Spliced Intron # retained_intron 14561797-14561960 (orient:+) max_ev_support = 1 # spliced_intron 14561797-14561960 (orient:+) max_ev_support = 1 scaffold_2 + intron 14561797-14561960 asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989 scaffold_2 + retained_intron 14561797-14561960 asmbl_24987 // Retained and Spliced Intron # retained_intron 14562180-14562666 (orient:+) max_ev_support = 1 # spliced_intron 14562180-14562666 (orient:+) max_ev_support = 1 scaffold_2 + intron 14562180-14562666 asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989 scaffold_2 + retained_intron 14562180-14562666 asmbl_24987 // Retained and Spliced Intron # retained_intron 14562874-14562960 (orient:+) max_ev_support = 1 # spliced_intron 14562874-14562960 (orient:+) max_ev_support = 1 scaffold_2 + intron 14562874-14562960 asmbl_24982,asmbl_24983,asmbl_24986,asmbl_24989 scaffold_2 + retained_intron 14562874-14562960 asmbl_24987 // Retained and Spliced Intron # retained_intron 14623015-14623109 (orient:+) max_ev_support = 1 # spliced_intron 14623015-14623109 (orient:+) max_ev_support = 2 scaffold_2 + intron 14623015-14623109 asmbl_24990 scaffold_2 + retained_intron 14623015-14623109 asmbl_24991 // Retained and Spliced Intron # retained_intron 14623203-14623311 (orient:+) max_ev_support = 1 # spliced_intron 14623203-14623311 (orient:+) max_ev_support = 2 scaffold_2 + intron 14623203-14623311 asmbl_24990 scaffold_2 + retained_intron 14623203-14623311 asmbl_24991 // Exon Skipping and Retention # skipped_exon 14734113-14735586 (orient:+) max_ev_support = 2 # retained_exon 14734586-14734648 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14734586-14734648 asmbl_24999 scaffold_2 + intron_skips_exon 14734113-14735586 asmbl_25000,asmbl_25005 // Exon Skipping and Retention # skipped_exon 14738582-14741472 (orient:+) max_ev_support = 2 # retained_exon 14740443-14740493 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14740443-14740493 asmbl_24999,asmbl_25005 scaffold_2 + intron_skips_exon 14738582-14741472 asmbl_25000 // Exon Skipping and Retention # skipped_exon 14751245-14752836 (orient:+) max_ev_support = 2 # retained_exon 14751910-14752164 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 14751910-14751987,14752083-14752164 asmbl_25007 scaffold_2 + intron_skips_exon 14751245-14752836 asmbl_25006 // Retained and Spliced Intron # retained_intron 15263572-15263652 (orient:+) max_ev_support = 1 # spliced_intron 15263572-15263652 (orient:+) max_ev_support = 2 scaffold_2 + intron 15263572-15263652 asmbl_25017 scaffold_2 + retained_intron 15263572-15263652 asmbl_25018 // Retained and Spliced Intron # retained_intron 15266613-15266717 (orient:+) max_ev_support = 2 # spliced_intron 15266613-15266717 (orient:+) max_ev_support = 2 scaffold_2 + intron 15266613-15266717 asmbl_25022,asmbl_25031 scaffold_2 + retained_intron 15266613-15266717 asmbl_25020,asmbl_25021,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25030 // Retained and Spliced Intron # retained_intron 15265851-15265947 (orient:+) max_ev_support = 2 # spliced_intron 15265851-15265947 (orient:+) max_ev_support = 2 scaffold_2 + intron 15265851-15265947 asmbl_25020,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25031 scaffold_2 + retained_intron 15265851-15265947 asmbl_25021,asmbl_25030 // Retained and Spliced Intron # retained_intron 15266137-15266197 (orient:+) max_ev_support = 2 # spliced_intron 15266137-15266197 (orient:+) max_ev_support = 2 scaffold_2 + intron 15266137-15266197 asmbl_25020,asmbl_25024,asmbl_25025,asmbl_25026,asmbl_25027,asmbl_25029 scaffold_2 + retained_intron 15266137-15266197 asmbl_25021,asmbl_25028,asmbl_25030,asmbl_25031 // Retained and Spliced Intron # retained_intron 15267438-15267758 (orient:+) max_ev_support = 2 # spliced_intron 15267438-15267758 (orient:+) max_ev_support = 1 scaffold_2 + intron 15267438-15267758 asmbl_25025,asmbl_25029,asmbl_25031 scaffold_2 + retained_intron 15267438-15267758 asmbl_25023 // Retained and Spliced Intron # retained_intron 15267111-15267282 (orient:+) max_ev_support = 1 # spliced_intron 15267111-15267282 (orient:+) max_ev_support = 2 scaffold_2 + intron 15267111-15267282 asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25024,asmbl_25026,asmbl_25028,asmbl_25029,asmbl_25030,asmbl_25031 scaffold_2 + retained_intron 15267111-15267282 asmbl_25025,asmbl_25027 // Retained and Spliced Intron # retained_intron 15267793-15267920 (orient:+) max_ev_support = 1 # spliced_intron 15267793-15267920 (orient:+) max_ev_support = 1 scaffold_2 + intron 15267793-15267920 asmbl_25029,asmbl_25031 scaffold_2 + retained_intron 15267793-15267920 asmbl_25025 // Retained and Spliced Intron # retained_intron 15266383-15266469 (orient:+) max_ev_support = 1 # spliced_intron 15266383-15266469 (orient:+) max_ev_support = 2 scaffold_2 + intron 15266383-15266469 asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25024,asmbl_25025,asmbl_25027,asmbl_25028,asmbl_25029,asmbl_25031 scaffold_2 + retained_intron 15266383-15266469 asmbl_25026,asmbl_25030 // Exon Skipping and Retention # skipped_exon 15267438-15267920 (orient:+) max_ev_support = 2 # retained_exon 15267759-15267792 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 15267759-15267792 asmbl_25029,asmbl_25031 scaffold_2 + intron_skips_exon 15267438-15267920 asmbl_25020,asmbl_25021,asmbl_25022,asmbl_25026,asmbl_25027,asmbl_25028,asmbl_25030 // Exon Skipping and Retention # skipped_exon 15267438-15267954 (orient:+) max_ev_support = 1 # retained_exon 15267759-15267792 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 15267759-15267792 asmbl_25029,asmbl_25031 scaffold_2 + intron_skips_exon 15267438-15267954 asmbl_25024 // Retained and Spliced Intron # retained_intron 15274237-15274329 (orient:+) max_ev_support = 2 # spliced_intron 15274237-15274329 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274237-15274329 asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15274237-15274329 asmbl_25032,asmbl_25033,asmbl_25036,asmbl_25043 // Retained and Spliced Intron # retained_intron 15271155-15271232 (orient:+) max_ev_support = 1 # spliced_intron 15271155-15271232 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271155-15271232 asmbl_25032,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15271155-15271232 asmbl_25033,asmbl_25036 // Retained and Spliced Intron # retained_intron 15271520-15271659 (orient:+) max_ev_support = 1 # spliced_intron 15271520-15271659 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271520-15271659 asmbl_25032,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15271520-15271659 asmbl_25033,asmbl_25036 // Retained and Spliced Intron # retained_intron 15271311-15271411 (orient:+) max_ev_support = 1 # spliced_intron 15271311-15271411 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271311-15271411 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15271311-15271411 asmbl_25036 // Retained and Spliced Intron # retained_intron 15273247-15273404 (orient:+) max_ev_support = 1 # spliced_intron 15273247-15273404 (orient:+) max_ev_support = 2 scaffold_2 + intron 15273247-15273404 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25045 scaffold_2 + retained_intron 15273247-15273404 asmbl_25037,asmbl_25044 // Retained and Spliced Intron # retained_intron 15271745-15272034 (orient:+) max_ev_support = 1 # spliced_intron 15271745-15272034 (orient:+) max_ev_support = 2 scaffold_2 + intron 15271745-15272034 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15271745-15272034 asmbl_25038 // Retained and Spliced Intron # retained_intron 15272586-15272673 (orient:+) max_ev_support = 1 # spliced_intron 15272586-15272673 (orient:+) max_ev_support = 2 scaffold_2 + intron 15272586-15272673 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25043 scaffold_2 + retained_intron 15272586-15272673 asmbl_25038,asmbl_25042,asmbl_25044,asmbl_25045 // Retained and Spliced Intron # retained_intron 15272780-15272879 (orient:+) max_ev_support = 1 # spliced_intron 15272780-15272879 (orient:+) max_ev_support = 2 scaffold_2 + intron 15272780-15272879 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25043 scaffold_2 + retained_intron 15272780-15272879 asmbl_25038,asmbl_25042,asmbl_25044,asmbl_25045 // Retained and Spliced Intron # retained_intron 15270688-15270822 (orient:+) max_ev_support = 1 # spliced_intron 15270688-15270822 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270688-15270822 asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25042,asmbl_25043,asmbl_25044 scaffold_2 + retained_intron 15270688-15270822 asmbl_25040,asmbl_25045 // Retained and Spliced Intron # retained_intron 15270016-15270269 (orient:+) max_ev_support = 1 # spliced_intron 15270016-15270269 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270016-15270269 asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15270016-15270269 asmbl_25041 // Retained and Spliced Intron # retained_intron 15270410-15270515 (orient:+) max_ev_support = 1 # spliced_intron 15270410-15270515 (orient:+) max_ev_support = 2 scaffold_2 + intron 15270410-15270515 asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25043,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15270410-15270515 asmbl_25041 // Retained and Spliced Intron # retained_intron 15274444-15274538 (orient:+) max_ev_support = 1 # spliced_intron 15274444-15274538 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274444-15274538 asmbl_25032,asmbl_25033,asmbl_25035,asmbl_25036,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15274444-15274538 asmbl_25043 // Retained and Spliced Intron # retained_intron 15274632-15274740 (orient:+) max_ev_support = 1 # spliced_intron 15274632-15274740 (orient:+) max_ev_support = 2 scaffold_2 + intron 15274632-15274740 asmbl_25035,asmbl_25037,asmbl_25039,asmbl_25040,asmbl_25042,asmbl_25044,asmbl_25045 scaffold_2 + retained_intron 15274632-15274740 asmbl_25043 // Retained and Spliced Intron # retained_intron 15451748-15451824 (orient:+) max_ev_support = 1 # spliced_intron 15451748-15451824 (orient:+) max_ev_support = 2 scaffold_2 + intron 15451748-15451824 asmbl_25063,asmbl_25064,asmbl_25066,asmbl_25067,asmbl_25068,asmbl_25069,asmbl_25070 scaffold_2 + retained_intron 15451748-15451824 asmbl_25065 // Retained and Spliced Intron # retained_intron 15451380-15451457 (orient:+) max_ev_support = 1 # spliced_intron 15451380-15451457 (orient:+) max_ev_support = 2 scaffold_2 + intron 15451380-15451457 asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25067,asmbl_25068,asmbl_25069,asmbl_25070 scaffold_2 + retained_intron 15451380-15451457 asmbl_25066 // Retained and Spliced Intron # retained_intron 15453799-15453902 (orient:+) max_ev_support = 1 # spliced_intron 15453799-15453902 (orient:+) max_ev_support = 2 scaffold_2 + intron 15453799-15453902 asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25068,asmbl_25069,asmbl_25070 scaffold_2 + retained_intron 15453799-15453902 asmbl_25067 // Retained and Spliced Intron # retained_intron 15455311-15455409 (orient:+) max_ev_support = 1 # spliced_intron 15455311-15455409 (orient:+) max_ev_support = 2 scaffold_2 + intron 15455311-15455409 asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067,asmbl_25069,asmbl_25070 scaffold_2 + retained_intron 15455311-15455409 asmbl_25068 // Retained and Spliced Intron # retained_intron 15455614-15455683 (orient:+) max_ev_support = 1 # spliced_intron 15455614-15455683 (orient:+) max_ev_support = 2 scaffold_2 + intron 15455614-15455683 asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067,asmbl_25069,asmbl_25070 scaffold_2 + retained_intron 15455614-15455683 asmbl_25068 // Retained and Spliced Intron # retained_intron 15455859-15455931 (orient:+) max_ev_support = 1 # spliced_intron 15455859-15455931 (orient:+) max_ev_support = 2 scaffold_2 + intron 15455859-15455931 asmbl_25063,asmbl_25064,asmbl_25065,asmbl_25066,asmbl_25067 scaffold_2 + retained_intron 15455859-15455931 asmbl_25068,asmbl_25069,asmbl_25070 // Exon Skipping and Retention # skipped_exon 15686520-15687128 (orient:+) max_ev_support = 2 # retained_exon 15686608-15686682 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 15686608-15686682 asmbl_25090,asmbl_25091,asmbl_25093 scaffold_2 + intron_skips_exon 15686520-15687128 asmbl_25092 // Retained and Spliced Intron # retained_intron 15686210-15686390 (orient:+) max_ev_support = 1 # spliced_intron 15686210-15686390 (orient:+) max_ev_support = 3 scaffold_2 + intron 15686210-15686390 asmbl_25091 scaffold_2 + retained_intron 15686210-15686390 asmbl_25093 // Retained and Spliced Intron # retained_intron 15686309-15686390 (orient:+) max_ev_support = 1 # spliced_intron 15686309-15686390 (orient:+) max_ev_support = 3 scaffold_2 + intron 15686309-15686390 asmbl_25090,asmbl_25092 scaffold_2 + retained_intron 15686309-15686390 asmbl_25093 // Retained and Spliced Intron # retained_intron 15700571-15700762 (orient:+) max_ev_support = 2 # spliced_intron 15700571-15700762 (orient:+) max_ev_support = 2 scaffold_2 + intron 15700571-15700762 asmbl_25095,asmbl_25096,asmbl_25097 scaffold_2 + retained_intron 15700571-15700762 asmbl_25094 // Retained and Spliced Intron # retained_intron 15894798-15894963 (orient:+) max_ev_support = 3 # spliced_intron 15894798-15894963 (orient:+) max_ev_support = 1 scaffold_2 + intron 15894798-15894963 asmbl_25107 scaffold_2 + retained_intron 15894798-15894963 asmbl_25106 // Exon Skipping and Retention # skipped_exon 16277574-16278279 (orient:+) max_ev_support = 1 # retained_exon 16277814-16278169 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16277814-16277903,16278071-16278169 asmbl_25127,asmbl_25128,asmbl_25131,asmbl_25132,asmbl_25134,asmbl_25135,asmbl_25136 scaffold_2 + intron_skips_exon 16277574-16278279 asmbl_25130,asmbl_25133 // Retained and Spliced Intron # retained_intron 16280177-16280329 (orient:+) max_ev_support = 1 # spliced_intron 16280177-16280329 (orient:+) max_ev_support = 2 scaffold_2 + intron 16280177-16280329 asmbl_25127,asmbl_25128,asmbl_25130,asmbl_25132,asmbl_25133,asmbl_25135,asmbl_25136 scaffold_2 + retained_intron 16280177-16280329 asmbl_25131,asmbl_25134 // Retained and Spliced Intron # retained_intron 16280381-16280649 (orient:+) max_ev_support = 1 # spliced_intron 16280381-16280649 (orient:+) max_ev_support = 3 scaffold_2 + intron 16280381-16280649 asmbl_25127,asmbl_25128,asmbl_25130,asmbl_25132,asmbl_25133,asmbl_25135,asmbl_25136 scaffold_2 + retained_intron 16280381-16280649 asmbl_25131,asmbl_25134 // Retained and Spliced Intron # retained_intron 16288921-16289287 (orient:+) max_ev_support = 1 # spliced_intron 16288921-16289287 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288921-16289287 asmbl_25137,asmbl_25138,asmbl_25142 scaffold_2 + retained_intron 16288921-16289287 asmbl_25140,asmbl_25141,asmbl_25143 // Retained and Spliced Intron # retained_intron 16286701-16286808 (orient:+) max_ev_support = 1 # spliced_intron 16286701-16286808 (orient:+) max_ev_support = 1 scaffold_2 + intron 16286701-16286808 asmbl_25137,asmbl_25138,asmbl_25140 scaffold_2 + retained_intron 16286701-16286808 asmbl_25141 // Retained and Spliced Intron # retained_intron 16288201-16288293 (orient:+) max_ev_support = 1 # spliced_intron 16288201-16288293 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288201-16288293 asmbl_25137,asmbl_25138,asmbl_25141,asmbl_25142 scaffold_2 + retained_intron 16288201-16288293 asmbl_25143 // Retained and Spliced Intron # retained_intron 16288201-16288309 (orient:+) max_ev_support = 1 # spliced_intron 16288201-16288309 (orient:+) max_ev_support = 1 scaffold_2 + intron 16288201-16288309 asmbl_25140 scaffold_2 + retained_intron 16288201-16288309 asmbl_25143 // Exon Skipping and Retention # skipped_exon 16357457-16357877 (orient:+) max_ev_support = 2 # retained_exon 16357572-16357813 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16357572-16357635,16357729-16357813 asmbl_25151 scaffold_2 + intron_skips_exon 16357457-16357877 asmbl_25150 // Exon Skipping and Retention # skipped_exon 16357457-16357947 (orient:+) max_ev_support = 1 # retained_exon 16357572-16357813 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16357572-16357635,16357729-16357813 asmbl_25151 scaffold_2 + intron_skips_exon 16357457-16357947 asmbl_25154 // Retained and Spliced Intron # retained_intron 16357636-16357728 (orient:+) max_ev_support = 2 # spliced_intron 16357636-16357728 (orient:+) max_ev_support = 2 scaffold_2 + intron 16357636-16357728 asmbl_25151,asmbl_25153 scaffold_2 + retained_intron 16357636-16357728 asmbl_25152 // Retained and Spliced Intron # retained_intron 16362712-16362791 (orient:+) max_ev_support = 3 # spliced_intron 16362712-16362791 (orient:+) max_ev_support = 3 scaffold_2 + intron 16362712-16362791 asmbl_25157,asmbl_25158 scaffold_2 + retained_intron 16362712-16362791 asmbl_25156 // Retained and Spliced Intron # retained_intron 16362712-16362798 (orient:+) max_ev_support = 3 # spliced_intron 16362712-16362798 (orient:+) max_ev_support = 1 scaffold_2 + intron 16362712-16362798 asmbl_25159,asmbl_25160 scaffold_2 + retained_intron 16362712-16362798 asmbl_25156 // Retained and Spliced Intron # retained_intron 16401404-16401522 (orient:+) max_ev_support = 1 # spliced_intron 16401404-16401522 (orient:+) max_ev_support = 3 scaffold_2 + intron 16401404-16401522 asmbl_25166,asmbl_25167 scaffold_2 + retained_intron 16401404-16401522 asmbl_25168 // Retained and Spliced Intron # retained_intron 16404516-16404596 (orient:+) max_ev_support = 3 # spliced_intron 16404516-16404596 (orient:+) max_ev_support = 2 scaffold_2 + intron 16404516-16404596 asmbl_25171,asmbl_25172 scaffold_2 + retained_intron 16404516-16404596 asmbl_25170 // Exon Skipping and Retention # skipped_exon 16403257-16403585 (orient:+) max_ev_support = 1 # retained_exon 16403416-16403503 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16403416-16403503 asmbl_25171 scaffold_2 + intron_skips_exon 16403257-16403585 asmbl_25173 // Retained and Spliced Intron # retained_intron 16403504-16403585 (orient:+) max_ev_support = 1 # spliced_intron 16403504-16403585 (orient:+) max_ev_support = 2 scaffold_2 + intron 16403504-16403585 asmbl_25171 scaffold_2 + retained_intron 16403504-16403585 asmbl_25172 // Exon Skipping and Retention # skipped_exon 16860835-16861593 (orient:+) max_ev_support = 2 # retained_exon 16861119-16861232 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 16861119-16861232 asmbl_25180 scaffold_2 + intron_skips_exon 16860835-16861593 asmbl_25181 // Retained and Spliced Intron # retained_intron 16860835-16861118 (orient:+) max_ev_support = 1 # spliced_intron 16860835-16861118 (orient:+) max_ev_support = 2 scaffold_2 + intron 16860835-16861118 asmbl_25180,asmbl_25182 scaffold_2 + retained_intron 16860835-16861118 asmbl_25185 // Exon Skipping and Retention # skipped_exon 17613910-17614818 (orient:+) max_ev_support = 1 # retained_exon 17614275-17614349 (orient:+) max_ev_support = 4 scaffold_2 + retained_exons 17614275-17614349 asmbl_25219 scaffold_2 + intron_skips_exon 17613910-17614818 asmbl_25220 // Exon Skipping and Retention # skipped_exon 17613187-17615255 (orient:+) max_ev_support = 1 # retained_exon 17614275-17615047 (orient:+) max_ev_support = 4 scaffold_2 + retained_exons 17614275-17614349,17614819-17615047 asmbl_25219 scaffold_2 + intron_skips_exon 17613187-17615255 asmbl_25221 // Exon Skipping and Retention # skipped_exon 17613187-17614274 (orient:+) max_ev_support = 2 # retained_exon 17613833-17613909 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 17613833-17613909 asmbl_25220 scaffold_2 + intron_skips_exon 17613187-17614274 asmbl_25219 // Exon Skipping and Retention # skipped_exon 18709372-18710245 (orient:+) max_ev_support = 2 # retained_exon 18709526-18709606 (orient:+) max_ev_support = 2 scaffold_2 + retained_exons 18709526-18709606 asmbl_25268,asmbl_25271 scaffold_2 + intron_skips_exon 18709372-18710245 asmbl_25269 // Retained and Spliced Intron # retained_intron 18711549-18711905 (orient:+) max_ev_support = 2 # spliced_intron 18711549-18711905 (orient:+) max_ev_support = 2 scaffold_2 + intron 18711549-18711905 asmbl_25268,asmbl_25269 scaffold_2 + retained_intron 18711549-18711905 asmbl_25270,asmbl_25271 // Retained and Spliced Intron # retained_intron 18771819-18771850 (orient:+) max_ev_support = 1 # spliced_intron 18771819-18771850 (orient:+) max_ev_support = 1 scaffold_2 + intron 18771819-18771850 asmbl_25283 scaffold_2 + retained_intron 18771819-18771850 asmbl_25282 // Retained and Spliced Intron # retained_intron 18771893-18771973 (orient:+) max_ev_support = 1 # spliced_intron 18771893-18771973 (orient:+) max_ev_support = 1 scaffold_2 + intron 18771893-18771973 asmbl_25283 scaffold_2 + retained_intron 18771893-18771973 asmbl_25282 // Exon Skipping and Retention # skipped_exon 18947872-18950334 (orient:+) max_ev_support = 1 # retained_exon 18949455-18949906 (orient:+) max_ev_support = 3 scaffold_2 + retained_exons 18949455-18949474,18949787-18949906 asmbl_25286,asmbl_25287,asmbl_25289 scaffold_2 + intron_skips_exon 18947872-18950334 asmbl_25290 // Exon Skipping and Retention # skipped_exon 18950712-18952345 (orient:+) max_ev_support = 2 # retained_exon 18951171-18951207 (orient:+) max_ev_support = 1 scaffold_2 + retained_exons 18951171-18951207 asmbl_25289 scaffold_2 + intron_skips_exon 18950712-18952345 asmbl_25287,asmbl_25290 // Retained and Spliced Intron # retained_intron 18964556-18964833 (orient:+) max_ev_support = 2 # spliced_intron 18964556-18964833 (orient:+) max_ev_support = 2 scaffold_2 + intron 18964556-18964833 asmbl_25293 scaffold_2 + retained_intron 18964556-18964833 asmbl_25292 // Retained and Spliced Intron # retained_intron 19140192-19140304 (orient:+) max_ev_support = 3 # spliced_intron 19140192-19140304 (orient:+) max_ev_support = 2 scaffold_2 + intron 19140192-19140304 asmbl_25300 scaffold_2 + retained_intron 19140192-19140304 asmbl_25299 // Retained and Spliced Intron # retained_intron 19881129-19881471 (orient:+) max_ev_support = 2 # spliced_intron 19881129-19881471 (orient:+) max_ev_support = 3 scaffold_2 + intron 19881129-19881471 asmbl_25330 scaffold_2 + retained_intron 19881129-19881471 asmbl_25331 // Retained and Spliced Intron # retained_intron 20441919-20442053 (orient:+) max_ev_support = 1 # spliced_intron 20441919-20442053 (orient:+) max_ev_support = 2 scaffold_2 + intron 20441919-20442053 asmbl_25364 scaffold_2 + retained_intron 20441919-20442053 asmbl_25365 // Exon Skipping and Retention # skipped_exon 425819-428277 (orient:+) max_ev_support = 1 # retained_exon 426154-426290 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 426154-426290 asmbl_25505 scaffold_20 + intron_skips_exon 425819-428277 asmbl_25506 // Exon Skipping and Retention # skipped_exon 426291-428804 (orient:+) max_ev_support = 1 # retained_exon 428278-428414 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 428278-428414 asmbl_25506 scaffold_20 + intron_skips_exon 426291-428804 asmbl_25505 // Retained and Spliced Intron # retained_intron 817430-817604 (orient:+) max_ev_support = 4 # spliced_intron 817430-817604 (orient:+) max_ev_support = 2 scaffold_20 + intron 817430-817604 asmbl_25534 scaffold_20 + retained_intron 817430-817604 asmbl_25533,asmbl_25535 // Retained and Spliced Intron # retained_intron 967202-967345 (orient:+) max_ev_support = 2 # spliced_intron 967202-967345 (orient:+) max_ev_support = 1 scaffold_20 + intron 967202-967345 asmbl_25550 scaffold_20 + retained_intron 967202-967345 asmbl_25549 // Retained and Spliced Intron # retained_intron 967146-967174 (orient:+) max_ev_support = 1 # spliced_intron 967146-967174 (orient:+) max_ev_support = 1 scaffold_20 + intron 967146-967174 asmbl_25549 scaffold_20 + retained_intron 967146-967174 asmbl_25550 // Retained and Spliced Intron # retained_intron 1490355-1490426 (orient:+) max_ev_support = 5 # spliced_intron 1490355-1490426 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490355-1490426 asmbl_25572,asmbl_25573,asmbl_25574 scaffold_20 + retained_intron 1490355-1490426 asmbl_25570 // Retained and Spliced Intron # retained_intron 1490365-1490400 (orient:+) max_ev_support = 5 # spliced_intron 1490365-1490400 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490365-1490400 asmbl_25571 scaffold_20 + retained_intron 1490365-1490400 asmbl_25570 // Retained and Spliced Intron # retained_intron 1490437-1490472 (orient:+) max_ev_support = 5 # spliced_intron 1490437-1490472 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490437-1490472 asmbl_25571 scaffold_20 + retained_intron 1490437-1490472 asmbl_25570,asmbl_25572,asmbl_25573,asmbl_25574 // Retained and Spliced Intron # retained_intron 1490221-1490256 (orient:+) max_ev_support = 1 # spliced_intron 1490221-1490256 (orient:+) max_ev_support = 1 scaffold_20 + intron 1490221-1490256 asmbl_25571,asmbl_25572 scaffold_20 + retained_intron 1490221-1490256 asmbl_25573,asmbl_25574 // Retained and Spliced Intron # retained_intron 1489870-1489939 (orient:+) max_ev_support = 1 # spliced_intron 1489870-1489939 (orient:+) max_ev_support = 1 scaffold_20 + intron 1489870-1489939 asmbl_25571,asmbl_25572,asmbl_25573 scaffold_20 + retained_intron 1489870-1489939 asmbl_25574 // Retained and Spliced Intron # retained_intron 1664651-1664742 (orient:+) max_ev_support = 3 # spliced_intron 1664651-1664742 (orient:+) max_ev_support = 1 scaffold_20 + intron 1664651-1664742 asmbl_25595 scaffold_20 + retained_intron 1664651-1664742 asmbl_25594 // Retained and Spliced Intron # retained_intron 1671485-1671524 (orient:+) max_ev_support = 2 # spliced_intron 1671485-1671524 (orient:+) max_ev_support = 1 scaffold_20 + intron 1671485-1671524 asmbl_25598 scaffold_20 + retained_intron 1671485-1671524 asmbl_25597 // Retained and Spliced Intron # retained_intron 1754144-1754228 (orient:+) max_ev_support = 2 # spliced_intron 1754144-1754228 (orient:+) max_ev_support = 3 scaffold_20 + intron 1754144-1754228 asmbl_25606 scaffold_20 + retained_intron 1754144-1754228 asmbl_25607,asmbl_25608 // Retained and Spliced Intron # retained_intron 1754144-1754287 (orient:+) max_ev_support = 2 # spliced_intron 1754144-1754287 (orient:+) max_ev_support = 3 scaffold_20 + intron 1754144-1754287 asmbl_25605 scaffold_20 + retained_intron 1754144-1754287 asmbl_25607,asmbl_25608 // Retained and Spliced Intron # retained_intron 2137292-2137342 (orient:+) max_ev_support = 3 # spliced_intron 2137292-2137342 (orient:+) max_ev_support = 1 scaffold_20 + intron 2137292-2137342 asmbl_25632 scaffold_20 + retained_intron 2137292-2137342 asmbl_25631 // Exon Skipping and Retention # skipped_exon 2290860-2292024 (orient:+) max_ev_support = 1 # retained_exon 2290959-2291069 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 2290959-2291069 asmbl_25636 scaffold_20 + intron_skips_exon 2290860-2292024 asmbl_25637 // Exon Skipping and Retention # skipped_exon 2391876-2393012 (orient:+) max_ev_support = 1 # retained_exon 2392380-2392427 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 2392380-2392427 asmbl_25638 scaffold_20 + intron_skips_exon 2391876-2393012 asmbl_25639 // Exon Skipping and Retention # skipped_exon 2403016-2404377 (orient:+) max_ev_support = 1 # retained_exon 2403443-2403500 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 2403443-2403500 asmbl_25641 scaffold_20 + intron_skips_exon 2403016-2404377 asmbl_25643,asmbl_25644 // Exon Skipping and Retention # skipped_exon 3036350-3037166 (orient:+) max_ev_support = 3 # retained_exon 3036843-3036908 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 3036843-3036908 asmbl_25668 scaffold_20 + intron_skips_exon 3036350-3037166 asmbl_25667 // Retained and Spliced Intron # retained_intron 4562562-4562796 (orient:+) max_ev_support = 2 # spliced_intron 4562562-4562796 (orient:+) max_ev_support = 3 scaffold_20 + intron 4562562-4562796 asmbl_25748 scaffold_20 + retained_intron 4562562-4562796 asmbl_25749 // Retained and Spliced Intron # retained_intron 5115892-5116021 (orient:+) max_ev_support = 2 # spliced_intron 5115892-5116021 (orient:+) max_ev_support = 2 scaffold_20 + intron 5115892-5116021 asmbl_25756 scaffold_20 + retained_intron 5115892-5116021 asmbl_25755 // Retained and Spliced Intron # retained_intron 5180909-5180942 (orient:+) max_ev_support = 1 # spliced_intron 5180909-5180942 (orient:+) max_ev_support = 1 scaffold_20 + intron 5180909-5180942 asmbl_25761 scaffold_20 + retained_intron 5180909-5180942 asmbl_25760 // Retained and Spliced Intron # retained_intron 5180977-5181010 (orient:+) max_ev_support = 1 # spliced_intron 5180977-5181010 (orient:+) max_ev_support = 1 scaffold_20 + intron 5180977-5181010 asmbl_25761 scaffold_20 + retained_intron 5180977-5181010 asmbl_25760 // Retained and Spliced Intron # retained_intron 6280984-6281051 (orient:+) max_ev_support = 1 # spliced_intron 6280984-6281051 (orient:+) max_ev_support = 1 scaffold_20 + intron 6280984-6281051 asmbl_25810 scaffold_20 + retained_intron 6280984-6281051 asmbl_25809 // Exon Skipping and Retention # skipped_exon 6715123-6717153 (orient:+) max_ev_support = 1 # retained_exon 6716651-6716790 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 6716651-6716790 asmbl_25823 scaffold_20 + intron_skips_exon 6715123-6717153 asmbl_25822 // Retained and Spliced Intron # retained_intron 6975652-6975749 (orient:+) max_ev_support = 1 # spliced_intron 6975652-6975749 (orient:+) max_ev_support = 2 scaffold_20 + intron 6975652-6975749 asmbl_25840 scaffold_20 + retained_intron 6975652-6975749 asmbl_25843 // Exon Skipping and Retention # skipped_exon 7196433-7197471 (orient:+) max_ev_support = 1 # retained_exon 7196574-7197202 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 7196574-7196772,7197123-7197202 asmbl_25859 scaffold_20 + intron_skips_exon 7196433-7197471 asmbl_25860 // Exon Skipping and Retention # skipped_exon 7195568-7196573 (orient:+) max_ev_support = 3 # retained_exon 7195820-7196432 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 7195820-7196018,7196353-7196432 asmbl_25860 scaffold_20 + intron_skips_exon 7195568-7196573 asmbl_25859 // Retained and Spliced Intron # retained_intron 7268277-7268638 (orient:+) max_ev_support = 2 # spliced_intron 7268277-7268638 (orient:+) max_ev_support = 2 scaffold_20 + intron 7268277-7268638 asmbl_25870 scaffold_20 + retained_intron 7268277-7268638 asmbl_25871,asmbl_25872 // Retained and Spliced Intron # retained_intron 8129408-8129479 (orient:+) max_ev_support = 3 # spliced_intron 8129408-8129479 (orient:+) max_ev_support = 1 scaffold_20 + intron 8129408-8129479 asmbl_25902 scaffold_20 + retained_intron 8129408-8129479 asmbl_25901 // Retained and Spliced Intron # retained_intron 8129531-8130806 (orient:+) max_ev_support = 7 # spliced_intron 8129531-8130806 (orient:+) max_ev_support = 1 scaffold_20 + intron 8129531-8130806 asmbl_25902 scaffold_20 + retained_intron 8129531-8130806 asmbl_25901 // Retained and Spliced Intron # retained_intron 8167955-8168079 (orient:+) max_ev_support = 1 # spliced_intron 8167955-8168079 (orient:+) max_ev_support = 1 scaffold_20 + intron 8167955-8168079 asmbl_25905 scaffold_20 + retained_intron 8167955-8168079 asmbl_25906 // Retained and Spliced Intron # retained_intron 8292117-8292345 (orient:+) max_ev_support = 3 # spliced_intron 8292117-8292345 (orient:+) max_ev_support = 3 scaffold_20 + intron 8292117-8292345 asmbl_25915,asmbl_25916,asmbl_25917,asmbl_25918 scaffold_20 + retained_intron 8292117-8292345 asmbl_25914,asmbl_25919 // Retained and Spliced Intron # retained_intron 8292472-8293196 (orient:+) max_ev_support = 3 # spliced_intron 8292472-8293196 (orient:+) max_ev_support = 3 scaffold_20 + intron 8292472-8293196 asmbl_25915,asmbl_25916,asmbl_25917,asmbl_25919 scaffold_20 + retained_intron 8292472-8293196 asmbl_25914,asmbl_25918 // Retained and Spliced Intron # retained_intron 8293604-8293726 (orient:+) max_ev_support = 3 # spliced_intron 8293604-8293726 (orient:+) max_ev_support = 1 scaffold_20 + intron 8293604-8293726 asmbl_25917 scaffold_20 + retained_intron 8293604-8293726 asmbl_25914,asmbl_25915,asmbl_25916,asmbl_25918,asmbl_25919 // Retained and Spliced Intron # retained_intron 8323604-8323724 (orient:+) max_ev_support = 2 # spliced_intron 8323604-8323724 (orient:+) max_ev_support = 2 scaffold_20 + intron 8323604-8323724 asmbl_25921 scaffold_20 + retained_intron 8323604-8323724 asmbl_25920,asmbl_25922 // Exon Skipping and Retention # skipped_exon 8431167-8431827 (orient:+) max_ev_support = 2 # retained_exon 8431370-8431467 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 8431370-8431467 asmbl_25934 scaffold_20 + intron_skips_exon 8431167-8431827 asmbl_25933 // Retained and Spliced Intron # retained_intron 9104952-9105052 (orient:+) max_ev_support = 1 # spliced_intron 9104952-9105052 (orient:+) max_ev_support = 3 scaffold_20 + intron 9104952-9105052 asmbl_25981,asmbl_25984,asmbl_25987 scaffold_20 + retained_intron 9104952-9105052 asmbl_25986 // Exon Skipping and Retention # skipped_exon 9517409-9519809 (orient:+) max_ev_support = 2 # retained_exon 9517588-9517614 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 9517588-9517614 asmbl_26015 scaffold_20 + intron_skips_exon 9517409-9519809 asmbl_26014 // Exon Skipping and Retention # skipped_exon 9532067-9533451 (orient:+) max_ev_support = 2 # retained_exon 9532630-9532662 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 9532630-9532662 asmbl_26018,asmbl_26019 scaffold_20 + intron_skips_exon 9532067-9533451 asmbl_26016 // Retained and Spliced Intron # retained_intron 9628124-9629033 (orient:+) max_ev_support = 4 # spliced_intron 9628124-9629033 (orient:+) max_ev_support = 1 scaffold_20 + intron 9628124-9629033 asmbl_26026,asmbl_26027 scaffold_20 + retained_intron 9628124-9629033 asmbl_26024,asmbl_26025 // Retained and Spliced Intron # retained_intron 9629566-9630290 (orient:+) max_ev_support = 2 # spliced_intron 9629566-9630290 (orient:+) max_ev_support = 2 scaffold_20 + intron 9629566-9630290 asmbl_26024,asmbl_26027 scaffold_20 + retained_intron 9629566-9630290 asmbl_26025,asmbl_26026 // Retained and Spliced Intron # retained_intron 9656219-9656254 (orient:+) max_ev_support = 4 # spliced_intron 9656219-9656254 (orient:+) max_ev_support = 1 scaffold_20 + intron 9656219-9656254 asmbl_26035 scaffold_20 + retained_intron 9656219-9656254 asmbl_26034 // Retained and Spliced Intron # retained_intron 9656237-9656272 (orient:+) max_ev_support = 4 # spliced_intron 9656237-9656272 (orient:+) max_ev_support = 1 scaffold_20 + intron 9656237-9656272 asmbl_26036 scaffold_20 + retained_intron 9656237-9656272 asmbl_26034 // Exon Skipping and Retention # skipped_exon 9968528-9969979 (orient:+) max_ev_support = 3 # retained_exon 9969246-9969260 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 9969246-9969260 asmbl_26072 scaffold_20 + intron_skips_exon 9968528-9969979 asmbl_26071 // Exon Skipping and Retention # skipped_exon 10132449-10132774 (orient:+) max_ev_support = 1 # retained_exon 10132650-10132661 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10132650-10132661 asmbl_26090 scaffold_20 + intron_skips_exon 10132449-10132774 asmbl_26091 // Retained and Spliced Intron # retained_intron 10135588-10137307 (orient:+) max_ev_support = 3 # spliced_intron 10135588-10137307 (orient:+) max_ev_support = 1 scaffold_20 + intron 10135588-10137307 asmbl_26094 scaffold_20 + retained_intron 10135588-10137307 asmbl_26092 // Exon Skipping and Retention # skipped_exon 10313546-10315402 (orient:+) max_ev_support = 2 # retained_exon 10314450-10314503 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 10314450-10314503 asmbl_26099 scaffold_20 + intron_skips_exon 10313546-10315402 asmbl_26100 // Retained and Spliced Intron # retained_intron 10385418-10385493 (orient:+) max_ev_support = 3 # spliced_intron 10385418-10385493 (orient:+) max_ev_support = 1 scaffold_20 + intron 10385418-10385493 asmbl_26113 scaffold_20 + retained_intron 10385418-10385493 asmbl_26107,asmbl_26108,asmbl_26109,asmbl_26112,asmbl_26114,asmbl_26115 // Retained and Spliced Intron # retained_intron 10384363-10384458 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384458 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384363-10384458 asmbl_26113,asmbl_26115 scaffold_20 + retained_intron 10384363-10384458 asmbl_26112 // Retained and Spliced Intron # retained_intron 10384363-10384667 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384667 (orient:+) max_ev_support = 3 scaffold_20 + intron 10384363-10384667 asmbl_26107,asmbl_26109,asmbl_26114 scaffold_20 + retained_intron 10384363-10384667 asmbl_26112 // Retained and Spliced Intron # retained_intron 10384363-10384687 (orient:+) max_ev_support = 1 # spliced_intron 10384363-10384687 (orient:+) max_ev_support = 2 scaffold_20 + intron 10384363-10384687 asmbl_26108 scaffold_20 + retained_intron 10384363-10384687 asmbl_26112 // Retained and Spliced Intron # retained_intron 10384550-10384667 (orient:+) max_ev_support = 1 # spliced_intron 10384550-10384667 (orient:+) max_ev_support = 1 scaffold_20 + intron 10384550-10384667 asmbl_26113,asmbl_26115 scaffold_20 + retained_intron 10384550-10384667 asmbl_26112 // Retained and Spliced Intron # retained_intron 10384754-10384960 (orient:+) max_ev_support = 1 # spliced_intron 10384754-10384960 (orient:+) max_ev_support = 2 scaffold_20 + intron 10384754-10384960 asmbl_26109,asmbl_26115 scaffold_20 + retained_intron 10384754-10384960 asmbl_26112 // Retained and Spliced Intron # retained_intron 10384754-10385038 (orient:+) max_ev_support = 1 # spliced_intron 10384754-10385038 (orient:+) max_ev_support = 3 scaffold_20 + intron 10384754-10385038 asmbl_26107,asmbl_26108,asmbl_26113,asmbl_26114 scaffold_20 + retained_intron 10384754-10385038 asmbl_26112 // Exon Skipping and Retention # skipped_exon 10384363-10384667 (orient:+) max_ev_support = 3 # retained_exon 10384459-10384549 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10384459-10384549 asmbl_26113,asmbl_26115 scaffold_20 + intron_skips_exon 10384363-10384667 asmbl_26107,asmbl_26109,asmbl_26114 // Exon Skipping and Retention # skipped_exon 10384363-10384687 (orient:+) max_ev_support = 2 # retained_exon 10384459-10384549 (orient:+) max_ev_support = 1 scaffold_20 + retained_exons 10384459-10384549 asmbl_26113,asmbl_26115 scaffold_20 + intron_skips_exon 10384363-10384687 asmbl_26108 // Retained and Spliced Intron # retained_intron 10660786-10661477 (orient:+) max_ev_support = 3 # spliced_intron 10660786-10661477 (orient:+) max_ev_support = 3 scaffold_20 + intron 10660786-10661477 asmbl_26129 scaffold_20 + retained_intron 10660786-10661477 asmbl_26130 // Exon Skipping and Retention # skipped_exon 10671068-10671939 (orient:+) max_ev_support = 1 # retained_exon 10671489-10671530 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 10671489-10671530 asmbl_26132,asmbl_26135 scaffold_20 + intron_skips_exon 10671068-10671939 asmbl_26134 // Retained and Spliced Intron # retained_intron 10787209-10787345 (orient:+) max_ev_support = 3 # spliced_intron 10787209-10787345 (orient:+) max_ev_support = 1 scaffold_20 + intron 10787209-10787345 asmbl_26149 scaffold_20 + retained_intron 10787209-10787345 asmbl_26145,asmbl_26146,asmbl_26147 // Retained and Spliced Intron # retained_intron 10787428-10787609 (orient:+) max_ev_support = 3 # spliced_intron 10787428-10787609 (orient:+) max_ev_support = 1 scaffold_20 + intron 10787428-10787609 asmbl_26148,asmbl_26149 scaffold_20 + retained_intron 10787428-10787609 asmbl_26145,asmbl_26146,asmbl_26147 // Retained and Spliced Intron # retained_intron 10861471-10862078 (orient:+) max_ev_support = 3 # spliced_intron 10861471-10862078 (orient:+) max_ev_support = 1 scaffold_20 + intron 10861471-10862078 asmbl_26153 scaffold_20 + retained_intron 10861471-10862078 asmbl_26150,asmbl_26152 // Retained and Spliced Intron # retained_intron 10856589-10856956 (orient:+) max_ev_support = 2 # spliced_intron 10856589-10856956 (orient:+) max_ev_support = 3 scaffold_20 + intron 10856589-10856956 asmbl_26150,asmbl_26153 scaffold_20 + retained_intron 10856589-10856956 asmbl_26151 // Retained and Spliced Intron # retained_intron 10987413-10987518 (orient:+) max_ev_support = 3 # spliced_intron 10987413-10987518 (orient:+) max_ev_support = 2 scaffold_20 + intron 10987413-10987518 asmbl_26159,asmbl_26160,asmbl_26161 scaffold_20 + retained_intron 10987413-10987518 asmbl_26157,asmbl_26158 // Retained and Spliced Intron # retained_intron 10986544-10986914 (orient:+) max_ev_support = 2 # spliced_intron 10986544-10986914 (orient:+) max_ev_support = 3 scaffold_20 + intron 10986544-10986914 asmbl_26157,asmbl_26159 scaffold_20 + retained_intron 10986544-10986914 asmbl_26158,asmbl_26161 // Retained and Spliced Intron # retained_intron 10986547-10986918 (orient:+) max_ev_support = 2 # spliced_intron 10986547-10986918 (orient:+) max_ev_support = 1 scaffold_20 + intron 10986547-10986918 asmbl_26160 scaffold_20 + retained_intron 10986547-10986918 asmbl_26158,asmbl_26161 // Retained and Spliced Intron # retained_intron 11142153-11142251 (orient:+) max_ev_support = 3 # spliced_intron 11142153-11142251 (orient:+) max_ev_support = 3 scaffold_20 + intron 11142153-11142251 asmbl_26170 scaffold_20 + retained_intron 11142153-11142251 asmbl_26171,asmbl_26172 // Retained and Spliced Intron # retained_intron 11285643-11285794 (orient:+) max_ev_support = 2 # spliced_intron 11285643-11285794 (orient:+) max_ev_support = 2 scaffold_20 + intron 11285643-11285794 asmbl_26179,asmbl_26181 scaffold_20 + retained_intron 11285643-11285794 asmbl_26180,asmbl_26182 // Retained and Spliced Intron # retained_intron 11438117-11438285 (orient:+) max_ev_support = 2 # spliced_intron 11438117-11438285 (orient:+) max_ev_support = 1 scaffold_20 + intron 11438117-11438285 asmbl_26200 scaffold_20 + retained_intron 11438117-11438285 asmbl_26199,asmbl_26201 // Retained and Spliced Intron # retained_intron 11438436-11438575 (orient:+) max_ev_support = 2 # spliced_intron 11438436-11438575 (orient:+) max_ev_support = 3 scaffold_20 + intron 11438436-11438575 asmbl_26199,asmbl_26200 scaffold_20 + retained_intron 11438436-11438575 asmbl_26201 // Exon Skipping and Retention # skipped_exon 11480461-11482106 (orient:+) max_ev_support = 2 # retained_exon 11481215-11481277 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11481215-11481277 asmbl_26207,asmbl_26209 scaffold_20 + intron_skips_exon 11480461-11482106 asmbl_26210,asmbl_26212,asmbl_26214 // Exon Skipping and Retention # skipped_exon 11480461-11483459 (orient:+) max_ev_support = 2 # retained_exon 11481215-11482530 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 11481215-11481277,11482107-11482194,11482356-11482530 asmbl_26207 scaffold_20 + intron_skips_exon 11480461-11483459 asmbl_26208 // Exon Skipping and Retention # skipped_exon 11566328-11568474 (orient:+) max_ev_support = 2 # retained_exon 11567538-11567899 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11567538-11567899 asmbl_26226 scaffold_20 + intron_skips_exon 11566328-11568474 asmbl_26228 // Exon Skipping and Retention # skipped_exon 11566279-11568474 (orient:+) max_ev_support = 1 # retained_exon 11567538-11567899 (orient:+) max_ev_support = 3 scaffold_20 + retained_exons 11567538-11567899 asmbl_26226 scaffold_20 + intron_skips_exon 11566279-11568474 asmbl_26230 // Retained and Spliced Intron # retained_intron 11670739-11670885 (orient:+) max_ev_support = 2 # spliced_intron 11670739-11670885 (orient:+) max_ev_support = 2 scaffold_20 + intron 11670739-11670885 asmbl_26238 scaffold_20 + retained_intron 11670739-11670885 asmbl_26236,asmbl_26237 // Retained and Spliced Intron # retained_intron 11671056-11671178 (orient:+) max_ev_support = 2 # spliced_intron 11671056-11671178 (orient:+) max_ev_support = 2 scaffold_20 + intron 11671056-11671178 asmbl_26236,asmbl_26238 scaffold_20 + retained_intron 11671056-11671178 asmbl_26237 // Retained and Spliced Intron # retained_intron 11924753-11925165 (orient:+) max_ev_support = 2 # spliced_intron 11924753-11925165 (orient:+) max_ev_support = 1 scaffold_20 + intron 11924753-11925165 asmbl_26256 scaffold_20 + retained_intron 11924753-11925165 asmbl_26254 // Retained and Spliced Intron # retained_intron 11924841-11925165 (orient:+) max_ev_support = 2 # spliced_intron 11924841-11925165 (orient:+) max_ev_support = 2 scaffold_20 + intron 11924841-11925165 asmbl_26255 scaffold_20 + retained_intron 11924841-11925165 asmbl_26254 // Exon Skipping and Retention # skipped_exon 12113774-12115279 (orient:+) max_ev_support = 1 # retained_exon 12114358-12114429 (orient:+) max_ev_support = 2 scaffold_20 + retained_exons 12114358-12114429 asmbl_26265,asmbl_26266,asmbl_26267 scaffold_20 + intron_skips_exon 12113774-12115279 asmbl_26268 // Retained and Spliced Intron # retained_intron 253640-253910 (orient:-) max_ev_support = 1 # spliced_intron 253640-253910 (orient:-) max_ev_support = 1 scaffold_20 - intron 253640-253910 asmbl_26411 scaffold_20 - retained_intron 253640-253910 asmbl_26412 // Exon Skipping and Retention # skipped_exon 628851-631334 (orient:-) max_ev_support = 2 # retained_exon 631162-631182 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 631162-631182 asmbl_26436 scaffold_20 - intron_skips_exon 628851-631334 asmbl_26435 // Retained and Spliced Intron # retained_intron 631183-631334 (orient:-) max_ev_support = 1 # spliced_intron 631183-631334 (orient:-) max_ev_support = 2 scaffold_20 - intron 631183-631334 asmbl_26436 scaffold_20 - retained_intron 631183-631334 asmbl_26438 // Retained and Spliced Intron # retained_intron 631243-631334 (orient:-) max_ev_support = 1 # spliced_intron 631243-631334 (orient:-) max_ev_support = 2 scaffold_20 - intron 631243-631334 asmbl_26437 scaffold_20 - retained_intron 631243-631334 asmbl_26438 // Exon Skipping and Retention # skipped_exon 650710-652095 (orient:-) max_ev_support = 1 # retained_exon 651139-651339 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 651139-651339 asmbl_26440 scaffold_20 - intron_skips_exon 650710-652095 asmbl_26441 // Exon Skipping and Retention # skipped_exon 651340-653728 (orient:-) max_ev_support = 2 # retained_exon 652096-652296 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 652096-652296 asmbl_26441 scaffold_20 - intron_skips_exon 651340-653728 asmbl_26440 // Retained and Spliced Intron # retained_intron 1080419-1081286 (orient:-) max_ev_support = 5 # spliced_intron 1080419-1081286 (orient:-) max_ev_support = 2 scaffold_20 - intron 1080419-1081286 asmbl_26462 scaffold_20 - retained_intron 1080419-1081286 asmbl_26461 // Retained and Spliced Intron # retained_intron 1107445-1107556 (orient:-) max_ev_support = 1 # spliced_intron 1107445-1107556 (orient:-) max_ev_support = 1 scaffold_20 - intron 1107445-1107556 asmbl_26468 scaffold_20 - retained_intron 1107445-1107556 asmbl_26469 // Retained and Spliced Intron # retained_intron 1126444-1126470 (orient:-) max_ev_support = 1 # spliced_intron 1126444-1126470 (orient:-) max_ev_support = 1 scaffold_20 - intron 1126444-1126470 asmbl_26475 scaffold_20 - retained_intron 1126444-1126470 asmbl_26476 // Retained and Spliced Intron # retained_intron 1468562-1468884 (orient:-) max_ev_support = 4 # spliced_intron 1468562-1468884 (orient:-) max_ev_support = 2 scaffold_20 - intron 1468562-1468884 asmbl_26504,asmbl_26505,asmbl_26506 scaffold_20 - retained_intron 1468562-1468884 asmbl_26503 // Retained and Spliced Intron # retained_intron 1469616-1469860 (orient:-) max_ev_support = 2 # spliced_intron 1469616-1469860 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469616-1469860 asmbl_26504,asmbl_26508 scaffold_20 - retained_intron 1469616-1469860 asmbl_26503,asmbl_26507,asmbl_26509 // Exon Skipping and Retention # skipped_exon 1469616-1470058 (orient:-) max_ev_support = 2 # retained_exon 1469861-1469910 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 1469861-1469910 asmbl_26504 scaffold_20 - intron_skips_exon 1469616-1470058 asmbl_26505 // Retained and Spliced Intron # retained_intron 1469067-1469176 (orient:-) max_ev_support = 1 # spliced_intron 1469067-1469176 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469067-1469176 asmbl_26503,asmbl_26504,asmbl_26505 scaffold_20 - retained_intron 1469067-1469176 asmbl_26506 // Retained and Spliced Intron # retained_intron 1469616-1470058 (orient:-) max_ev_support = 1 # spliced_intron 1469616-1470058 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469616-1470058 asmbl_26505 scaffold_20 - retained_intron 1469616-1470058 asmbl_26507 // Retained and Spliced Intron # retained_intron 1469911-1470058 (orient:-) max_ev_support = 1 # spliced_intron 1469911-1470058 (orient:-) max_ev_support = 2 scaffold_20 - intron 1469911-1470058 asmbl_26503,asmbl_26504,asmbl_26509 scaffold_20 - retained_intron 1469911-1470058 asmbl_26507,asmbl_26508 // Retained and Spliced Intron # retained_intron 1614927-1615776 (orient:-) max_ev_support = 5 # spliced_intron 1614927-1615776 (orient:-) max_ev_support = 1 scaffold_20 - intron 1614927-1615776 asmbl_26521 scaffold_20 - retained_intron 1614927-1615776 asmbl_26518,asmbl_26519,asmbl_26520 // Exon Skipping and Retention # skipped_exon 1615934-1618620 (orient:-) max_ev_support = 1 # retained_exon 1616257-1616761 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1616257-1616378,1616678-1616761 asmbl_26518 scaffold_20 - intron_skips_exon 1615934-1618620 asmbl_26519 // Exon Skipping and Retention # skipped_exon 1616379-1619049 (orient:-) max_ev_support = 1 # retained_exon 1616678-1616761 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1616678-1616761 asmbl_26518 scaffold_20 - intron_skips_exon 1616379-1619049 asmbl_26520,asmbl_26521 // Exon Skipping and Retention # skipped_exon 1616762-1619278 (orient:-) max_ev_support = 1 # retained_exon 1618621-1619133 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 1618621-1618742,1619050-1619133 asmbl_26519 scaffold_20 - intron_skips_exon 1616762-1619278 asmbl_26518 // Retained and Spliced Intron # retained_intron 1624100-1624144 (orient:-) max_ev_support = 1 # spliced_intron 1624100-1624144 (orient:-) max_ev_support = 1 scaffold_20 - intron 1624100-1624144 asmbl_26523 scaffold_20 - retained_intron 1624100-1624144 asmbl_26522 // Retained and Spliced Intron # retained_intron 2079205-2079301 (orient:-) max_ev_support = 1 # spliced_intron 2079205-2079301 (orient:-) max_ev_support = 4 scaffold_20 - intron 2079205-2079301 asmbl_26557 scaffold_20 - retained_intron 2079205-2079301 asmbl_26558 // Retained and Spliced Intron # retained_intron 2613659-2614166 (orient:-) max_ev_support = 1 # spliced_intron 2613659-2614166 (orient:-) max_ev_support = 2 scaffold_20 - intron 2613659-2614166 asmbl_26577 scaffold_20 - retained_intron 2613659-2614166 asmbl_26578 // Retained and Spliced Intron # retained_intron 2631420-2631530 (orient:-) max_ev_support = 2 # spliced_intron 2631420-2631530 (orient:-) max_ev_support = 1 scaffold_20 - intron 2631420-2631530 asmbl_26580 scaffold_20 - retained_intron 2631420-2631530 asmbl_26581 // Retained and Spliced Intron # retained_intron 2765358-2765473 (orient:-) max_ev_support = 2 # spliced_intron 2765358-2765473 (orient:-) max_ev_support = 1 scaffold_20 - intron 2765358-2765473 asmbl_26596 scaffold_20 - retained_intron 2765358-2765473 asmbl_26595 // Exon Skipping and Retention # skipped_exon 2763173-2765473 (orient:-) max_ev_support = 1 # retained_exon 2765259-2765357 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 2765259-2765357 asmbl_26596 scaffold_20 - intron_skips_exon 2763173-2765473 asmbl_26597 // Exon Skipping and Retention # skipped_exon 2763173-2765410 (orient:-) max_ev_support = 1 # retained_exon 2765259-2765357 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 2765259-2765357 asmbl_26596 scaffold_20 - intron_skips_exon 2763173-2765410 asmbl_26598 // Exon Skipping and Retention # skipped_exon 3251565-3253888 (orient:-) max_ev_support = 2 # retained_exon 3253020-3253159 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 3253020-3253159 asmbl_26613 scaffold_20 - intron_skips_exon 3251565-3253888 asmbl_26614 // Retained and Spliced Intron # retained_intron 3440981-3441081 (orient:-) max_ev_support = 3 # spliced_intron 3440981-3441081 (orient:-) max_ev_support = 1 scaffold_20 - intron 3440981-3441081 asmbl_26617 scaffold_20 - retained_intron 3440981-3441081 asmbl_26616 // Retained and Spliced Intron # retained_intron 4262299-4262354 (orient:-) max_ev_support = 1 # spliced_intron 4262299-4262354 (orient:-) max_ev_support = 1 scaffold_20 - intron 4262299-4262354 asmbl_26650 scaffold_20 - retained_intron 4262299-4262354 asmbl_26649 // Retained and Spliced Intron # retained_intron 4262257-4262277 (orient:-) max_ev_support = 1 # spliced_intron 4262257-4262277 (orient:-) max_ev_support = 1 scaffold_20 - intron 4262257-4262277 asmbl_26649 scaffold_20 - retained_intron 4262257-4262277 asmbl_26650 // Retained and Spliced Intron # retained_intron 4478711-4479160 (orient:-) max_ev_support = 1 # spliced_intron 4478711-4479160 (orient:-) max_ev_support = 2 scaffold_20 - intron 4478711-4479160 asmbl_26654,asmbl_26655,asmbl_26656,asmbl_26660 scaffold_20 - retained_intron 4478711-4479160 asmbl_26661,asmbl_26662 // Retained and Spliced Intron # retained_intron 4510126-4510257 (orient:-) max_ev_support = 1 # spliced_intron 4510126-4510257 (orient:-) max_ev_support = 2 scaffold_20 - intron 4510126-4510257 asmbl_26665 scaffold_20 - retained_intron 4510126-4510257 asmbl_26667 // Retained and Spliced Intron # retained_intron 5553307-5553473 (orient:-) max_ev_support = 3 # spliced_intron 5553307-5553473 (orient:-) max_ev_support = 2 scaffold_20 - intron 5553307-5553473 asmbl_26689,asmbl_26693 scaffold_20 - retained_intron 5553307-5553473 asmbl_26688,asmbl_26692 // Retained and Spliced Intron # retained_intron 5845427-5845613 (orient:-) max_ev_support = 3 # spliced_intron 5845427-5845613 (orient:-) max_ev_support = 2 scaffold_20 - intron 5845427-5845613 asmbl_26698 scaffold_20 - retained_intron 5845427-5845613 asmbl_26697 // Retained and Spliced Intron # retained_intron 5845709-5845968 (orient:-) max_ev_support = 4 # spliced_intron 5845709-5845968 (orient:-) max_ev_support = 2 scaffold_20 - intron 5845709-5845968 asmbl_26698 scaffold_20 - retained_intron 5845709-5845968 asmbl_26697 // Retained and Spliced Intron # retained_intron 5886547-5886628 (orient:-) max_ev_support = 2 # spliced_intron 5886547-5886628 (orient:-) max_ev_support = 2 scaffold_20 - intron 5886547-5886628 asmbl_26701 scaffold_20 - retained_intron 5886547-5886628 asmbl_26702 // Exon Skipping and Retention # skipped_exon 5915146-5916949 (orient:-) max_ev_support = 1 # retained_exon 5916295-5916378 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 5916295-5916378 asmbl_26705 scaffold_20 - intron_skips_exon 5915146-5916949 asmbl_26706 // Retained and Spliced Intron # retained_intron 5922620-5922744 (orient:-) max_ev_support = 3 # spliced_intron 5922620-5922744 (orient:-) max_ev_support = 3 scaffold_20 - intron 5922620-5922744 asmbl_26708,asmbl_26709,asmbl_26710 scaffold_20 - retained_intron 5922620-5922744 asmbl_26707 // Retained and Spliced Intron # retained_intron 5923146-5923230 (orient:-) max_ev_support = 1 # spliced_intron 5923146-5923230 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923146-5923230 asmbl_26708,asmbl_26709,asmbl_26710 scaffold_20 - retained_intron 5923146-5923230 asmbl_26707,asmbl_26711,asmbl_26712,asmbl_26713 // Retained and Spliced Intron # retained_intron 5923668-5924088 (orient:-) max_ev_support = 3 # spliced_intron 5923668-5924088 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923668-5924088 asmbl_26708,asmbl_26711 scaffold_20 - retained_intron 5923668-5924088 asmbl_26707 // Retained and Spliced Intron # retained_intron 5923668-5924973 (orient:-) max_ev_support = 3 # spliced_intron 5923668-5924973 (orient:-) max_ev_support = 2 scaffold_20 - intron 5923668-5924973 asmbl_26710,asmbl_26712,asmbl_26713 scaffold_20 - retained_intron 5923668-5924973 asmbl_26707 // Retained and Spliced Intron # retained_intron 5922950-5923078 (orient:-) max_ev_support = 1 # spliced_intron 5922950-5923078 (orient:-) max_ev_support = 2 scaffold_20 - intron 5922950-5923078 asmbl_26707,asmbl_26708,asmbl_26709,asmbl_26710,asmbl_26713 scaffold_20 - retained_intron 5922950-5923078 asmbl_26711,asmbl_26712 // Retained and Spliced Intron # retained_intron 5927643-5928282 (orient:-) max_ev_support = 2 # spliced_intron 5927643-5928282 (orient:-) max_ev_support = 2 scaffold_20 - intron 5927643-5928282 asmbl_26715 scaffold_20 - retained_intron 5927643-5928282 asmbl_26714,asmbl_26716 // Retained and Spliced Intron # retained_intron 5928434-5928707 (orient:-) max_ev_support = 2 # spliced_intron 5928434-5928707 (orient:-) max_ev_support = 2 scaffold_20 - intron 5928434-5928707 asmbl_26714,asmbl_26715 scaffold_20 - retained_intron 5928434-5928707 asmbl_26716 // Retained and Spliced Intron # retained_intron 5954529-5955148 (orient:-) max_ev_support = 2 # spliced_intron 5954529-5955148 (orient:-) max_ev_support = 2 scaffold_20 - intron 5954529-5955148 asmbl_26720 scaffold_20 - retained_intron 5954529-5955148 asmbl_26724 // Exon Skipping and Retention # skipped_exon 6132921-6134448 (orient:-) max_ev_support = 2 # retained_exon 6134055-6134081 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6134055-6134081 asmbl_26736 scaffold_20 - intron_skips_exon 6132921-6134448 asmbl_26735 // Exon Skipping and Retention # skipped_exon 6468162-6468442 (orient:-) max_ev_support = 1 # retained_exon 6468274-6468350 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6468274-6468350 asmbl_26756 scaffold_20 - intron_skips_exon 6468162-6468442 asmbl_26757 // Exon Skipping and Retention # skipped_exon 6655139-6656436 (orient:-) max_ev_support = 1 # retained_exon 6655900-6656024 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 6655900-6656024 asmbl_26761,asmbl_26762,asmbl_26763 scaffold_20 - intron_skips_exon 6655139-6656436 asmbl_26764 // Retained and Spliced Intron # retained_intron 7103318-7104894 (orient:-) max_ev_support = 4 # spliced_intron 7103318-7104894 (orient:-) max_ev_support = 2 scaffold_20 - intron 7103318-7104894 asmbl_26798 scaffold_20 - retained_intron 7103318-7104894 asmbl_26796 // Retained and Spliced Intron # retained_intron 7104772-7104894 (orient:-) max_ev_support = 2 # spliced_intron 7104772-7104894 (orient:-) max_ev_support = 2 scaffold_20 - intron 7104772-7104894 asmbl_26797 scaffold_20 - retained_intron 7104772-7104894 asmbl_26796 // Retained and Spliced Intron # retained_intron 7206140-7206288 (orient:-) max_ev_support = 2 # spliced_intron 7206140-7206288 (orient:-) max_ev_support = 2 scaffold_20 - intron 7206140-7206288 asmbl_26810 scaffold_20 - retained_intron 7206140-7206288 asmbl_26809 // Retained and Spliced Intron # retained_intron 7471394-7471647 (orient:-) max_ev_support = 2 # spliced_intron 7471394-7471647 (orient:-) max_ev_support = 1 scaffold_20 - intron 7471394-7471647 asmbl_26832 scaffold_20 - retained_intron 7471394-7471647 asmbl_26826 // Retained and Spliced Intron # retained_intron 7471397-7471647 (orient:-) max_ev_support = 2 # spliced_intron 7471397-7471647 (orient:-) max_ev_support = 2 scaffold_20 - intron 7471397-7471647 asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26833 scaffold_20 - retained_intron 7471397-7471647 asmbl_26826 // Retained and Spliced Intron # retained_intron 7468719-7468963 (orient:-) max_ev_support = 1 # spliced_intron 7468719-7468963 (orient:-) max_ev_support = 2 scaffold_20 - intron 7468719-7468963 asmbl_26825,asmbl_26829,asmbl_26831 scaffold_20 - retained_intron 7468719-7468963 asmbl_26827,asmbl_26828,asmbl_26830 // Retained and Spliced Intron # retained_intron 7469036-7469153 (orient:-) max_ev_support = 1 # spliced_intron 7469036-7469153 (orient:-) max_ev_support = 2 scaffold_20 - intron 7469036-7469153 asmbl_26825,asmbl_26829,asmbl_26831 scaffold_20 - retained_intron 7469036-7469153 asmbl_26827,asmbl_26828,asmbl_26830 // Retained and Spliced Intron # retained_intron 7469286-7469829 (orient:-) max_ev_support = 1 # spliced_intron 7469286-7469829 (orient:-) max_ev_support = 2 scaffold_20 - intron 7469286-7469829 asmbl_26825,asmbl_26827,asmbl_26829 scaffold_20 - retained_intron 7469286-7469829 asmbl_26828,asmbl_26830,asmbl_26831 // Retained and Spliced Intron # retained_intron 7473157-7473239 (orient:-) max_ev_support = 1 # spliced_intron 7473157-7473239 (orient:-) max_ev_support = 2 scaffold_20 - intron 7473157-7473239 asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832 scaffold_20 - retained_intron 7473157-7473239 asmbl_26833 // Retained and Spliced Intron # retained_intron 7473793-7473882 (orient:-) max_ev_support = 1 # spliced_intron 7473793-7473882 (orient:-) max_ev_support = 2 scaffold_20 - intron 7473793-7473882 asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832 scaffold_20 - retained_intron 7473793-7473882 asmbl_26835 // Retained and Spliced Intron # retained_intron 7473965-7474216 (orient:-) max_ev_support = 1 # spliced_intron 7473965-7474216 (orient:-) max_ev_support = 2 scaffold_20 - intron 7473965-7474216 asmbl_26825,asmbl_26827,asmbl_26828,asmbl_26829,asmbl_26830,asmbl_26831,asmbl_26832 scaffold_20 - retained_intron 7473965-7474216 asmbl_26835 // Exon Skipping and Retention # skipped_exon 7801873-7802642 (orient:-) max_ev_support = 1 # retained_exon 7802015-7802281 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 7802015-7802084,7802198-7802281 asmbl_26841 scaffold_20 - intron_skips_exon 7801873-7802642 asmbl_26842 // Retained and Spliced Intron # retained_intron 7806737-7806925 (orient:-) max_ev_support = 2 # spliced_intron 7806737-7806925 (orient:-) max_ev_support = 3 scaffold_20 - intron 7806737-7806925 asmbl_26844,asmbl_26846 scaffold_20 - retained_intron 7806737-7806925 asmbl_26845 // Exon Skipping and Retention # skipped_exon 7861676-7863975 (orient:-) max_ev_support = 2 # retained_exon 7862451-7862542 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 7862451-7862542 asmbl_26854,asmbl_26859 scaffold_20 - intron_skips_exon 7861676-7863975 asmbl_26853,asmbl_26856 // Retained and Spliced Intron # retained_intron 7857888-7858063 (orient:-) max_ev_support = 1 # spliced_intron 7857888-7858063 (orient:-) max_ev_support = 2 scaffold_20 - intron 7857888-7858063 asmbl_26853,asmbl_26854,asmbl_26855 scaffold_20 - retained_intron 7857888-7858063 asmbl_26857,asmbl_26859 // Retained and Spliced Intron # retained_intron 7858103-7858245 (orient:-) max_ev_support = 1 # spliced_intron 7858103-7858245 (orient:-) max_ev_support = 2 scaffold_20 - intron 7858103-7858245 asmbl_26853,asmbl_26854,asmbl_26855 scaffold_20 - retained_intron 7858103-7858245 asmbl_26857,asmbl_26859 // Retained and Spliced Intron # retained_intron 7899285-7899371 (orient:-) max_ev_support = 3 # spliced_intron 7899285-7899371 (orient:-) max_ev_support = 3 scaffold_20 - intron 7899285-7899371 asmbl_26864 scaffold_20 - retained_intron 7899285-7899371 asmbl_26865 // Retained and Spliced Intron # retained_intron 7910387-7910642 (orient:-) max_ev_support = 3 # spliced_intron 7910387-7910642 (orient:-) max_ev_support = 2 scaffold_20 - intron 7910387-7910642 asmbl_26867 scaffold_20 - retained_intron 7910387-7910642 asmbl_26866 // Retained and Spliced Intron # retained_intron 8002938-8003022 (orient:-) max_ev_support = 3 # spliced_intron 8002938-8003022 (orient:-) max_ev_support = 1 scaffold_20 - intron 8002938-8003022 asmbl_26874 scaffold_20 - retained_intron 8002938-8003022 asmbl_26872 // Exon Skipping and Retention # skipped_exon 8018205-8018985 (orient:-) max_ev_support = 1 # retained_exon 8018476-8018855 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 8018476-8018557,8018791-8018855 asmbl_26876 scaffold_20 - intron_skips_exon 8018205-8018985 asmbl_26877 // Retained and Spliced Intron # retained_intron 8338716-8338886 (orient:-) max_ev_support = 2 # spliced_intron 8338716-8338886 (orient:-) max_ev_support = 2 scaffold_20 - intron 8338716-8338886 asmbl_26900,asmbl_26906,asmbl_26907 scaffold_20 - retained_intron 8338716-8338886 asmbl_26901,asmbl_26903,asmbl_26904,asmbl_26905 // Retained and Spliced Intron # retained_intron 8340131-8340449 (orient:-) max_ev_support = 1 # spliced_intron 8340131-8340449 (orient:-) max_ev_support = 2 scaffold_20 - intron 8340131-8340449 asmbl_26900,asmbl_26901,asmbl_26904,asmbl_26905,asmbl_26906,asmbl_26907 scaffold_20 - retained_intron 8340131-8340449 asmbl_26903 // Retained and Spliced Intron # retained_intron 8394496-8394623 (orient:-) max_ev_support = 2 # spliced_intron 8394496-8394623 (orient:-) max_ev_support = 2 scaffold_20 - intron 8394496-8394623 asmbl_26915 scaffold_20 - retained_intron 8394496-8394623 asmbl_26914 // Retained and Spliced Intron # retained_intron 8578419-8578764 (orient:-) max_ev_support = 1 # spliced_intron 8578419-8578764 (orient:-) max_ev_support = 2 scaffold_20 - intron 8578419-8578764 asmbl_26920 scaffold_20 - retained_intron 8578419-8578764 asmbl_26926 // Retained and Spliced Intron # retained_intron 8936755-8936837 (orient:-) max_ev_support = 1 # spliced_intron 8936755-8936837 (orient:-) max_ev_support = 1 scaffold_20 - intron 8936755-8936837 asmbl_26936 scaffold_20 - retained_intron 8936755-8936837 asmbl_26937 // Retained and Spliced Intron # retained_intron 9825448-9825623 (orient:-) max_ev_support = 2 # spliced_intron 9825448-9825623 (orient:-) max_ev_support = 2 scaffold_20 - intron 9825448-9825623 asmbl_26983,asmbl_26984,asmbl_26985 scaffold_20 - retained_intron 9825448-9825623 asmbl_26982 // Retained and Spliced Intron # retained_intron 9826506-9826707 (orient:-) max_ev_support = 1 # spliced_intron 9826506-9826707 (orient:-) max_ev_support = 2 scaffold_20 - intron 9826506-9826707 asmbl_26982,asmbl_26983,asmbl_26985 scaffold_20 - retained_intron 9826506-9826707 asmbl_26984 // Retained and Spliced Intron # retained_intron 10070223-10070662 (orient:-) max_ev_support = 3 # spliced_intron 10070223-10070662 (orient:-) max_ev_support = 3 scaffold_20 - intron 10070223-10070662 asmbl_27003,asmbl_27004 scaffold_20 - retained_intron 10070223-10070662 asmbl_27002 // Retained and Spliced Intron # retained_intron 10069728-10069888 (orient:-) max_ev_support = 2 # spliced_intron 10069728-10069888 (orient:-) max_ev_support = 3 scaffold_20 - intron 10069728-10069888 asmbl_27002,asmbl_27003 scaffold_20 - retained_intron 10069728-10069888 asmbl_27004 // Exon Skipping and Retention # skipped_exon 10113827-10114091 (orient:-) max_ev_support = 1 # retained_exon 10113960-10113999 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 10113960-10113999 asmbl_27006,asmbl_27007,asmbl_27008 scaffold_20 - intron_skips_exon 10113827-10114091 asmbl_27009 // Retained and Spliced Intron # retained_intron 10114940-10115029 (orient:-) max_ev_support = 3 # spliced_intron 10114940-10115029 (orient:-) max_ev_support = 1 scaffold_20 - intron 10114940-10115029 asmbl_27008,asmbl_27009 scaffold_20 - retained_intron 10114940-10115029 asmbl_27006 // Exon Skipping and Retention # skipped_exon 10249203-10249538 (orient:-) max_ev_support = 2 # retained_exon 10249290-10249425 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 10249290-10249425 asmbl_27021 scaffold_20 - intron_skips_exon 10249203-10249538 asmbl_27020 // Retained and Spliced Intron # retained_intron 10249203-10249289 (orient:-) max_ev_support = 1 # spliced_intron 10249203-10249289 (orient:-) max_ev_support = 2 scaffold_20 - intron 10249203-10249289 asmbl_27021 scaffold_20 - retained_intron 10249203-10249289 asmbl_27022 // Retained and Spliced Intron # retained_intron 10249203-10249538 (orient:-) max_ev_support = 1 # spliced_intron 10249203-10249538 (orient:-) max_ev_support = 2 scaffold_20 - intron 10249203-10249538 asmbl_27020 scaffold_20 - retained_intron 10249203-10249538 asmbl_27022 // Retained and Spliced Intron # retained_intron 10249426-10249538 (orient:-) max_ev_support = 1 # spliced_intron 10249426-10249538 (orient:-) max_ev_support = 2 scaffold_20 - intron 10249426-10249538 asmbl_27021 scaffold_20 - retained_intron 10249426-10249538 asmbl_27022 // Retained and Spliced Intron # retained_intron 10468860-10469189 (orient:-) max_ev_support = 2 # spliced_intron 10468860-10469189 (orient:-) max_ev_support = 2 scaffold_20 - intron 10468860-10469189 asmbl_27027,asmbl_27028 scaffold_20 - retained_intron 10468860-10469189 asmbl_27026 // Retained and Spliced Intron # retained_intron 11078627-11078744 (orient:-) max_ev_support = 1 # spliced_intron 11078627-11078744 (orient:-) max_ev_support = 2 scaffold_20 - intron 11078627-11078744 asmbl_27054 scaffold_20 - retained_intron 11078627-11078744 asmbl_27058,asmbl_27059 // Retained and Spliced Intron # retained_intron 11078653-11078744 (orient:-) max_ev_support = 1 # spliced_intron 11078653-11078744 (orient:-) max_ev_support = 2 scaffold_20 - intron 11078653-11078744 asmbl_27055,asmbl_27057 scaffold_20 - retained_intron 11078653-11078744 asmbl_27058,asmbl_27059 // Exon Skipping and Retention # skipped_exon 11085396-11086338 (orient:-) max_ev_support = 3 # retained_exon 11086157-11086249 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 11086157-11086249 asmbl_27060 scaffold_20 - intron_skips_exon 11085396-11086338 asmbl_27061 // Exon Skipping and Retention # skipped_exon 11085396-11086156 (orient:-) max_ev_support = 3 # retained_exon 11085819-11085964 (orient:-) max_ev_support = 3 scaffold_20 - retained_exons 11085819-11085964 asmbl_27062 scaffold_20 - intron_skips_exon 11085396-11086156 asmbl_27060 // Retained and Spliced Intron # retained_intron 11538861-11538952 (orient:-) max_ev_support = 2 # spliced_intron 11538861-11538952 (orient:-) max_ev_support = 3 scaffold_20 - intron 11538861-11538952 asmbl_27075 scaffold_20 - retained_intron 11538861-11538952 asmbl_27076 // Retained and Spliced Intron # retained_intron 11547068-11547149 (orient:-) max_ev_support = 2 # spliced_intron 11547068-11547149 (orient:-) max_ev_support = 2 scaffold_20 - intron 11547068-11547149 asmbl_27077 scaffold_20 - retained_intron 11547068-11547149 asmbl_27080 // Retained and Spliced Intron # retained_intron 11591608-11592897 (orient:-) max_ev_support = 4 # spliced_intron 11591608-11592897 (orient:-) max_ev_support = 1 scaffold_20 - intron 11591608-11592897 asmbl_27092,asmbl_27095,asmbl_27096 scaffold_20 - retained_intron 11591608-11592897 asmbl_27087 // Exon Skipping and Retention # skipped_exon 11599629-11600558 (orient:-) max_ev_support = 1 # retained_exon 11600427-11600444 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11600427-11600444 asmbl_27092 scaffold_20 - intron_skips_exon 11599629-11600558 asmbl_27096 // Retained and Spliced Intron # retained_intron 11600743-11600915 (orient:-) max_ev_support = 1 # spliced_intron 11600743-11600915 (orient:-) max_ev_support = 1 scaffold_20 - intron 11600743-11600915 asmbl_27096 scaffold_20 - retained_intron 11600743-11600915 asmbl_27092,asmbl_27095 // Exon Skipping and Retention # skipped_exon 11612162-11613978 (orient:-) max_ev_support = 1 # retained_exon 11613242-11613315 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11613242-11613315 asmbl_27093 scaffold_20 - intron_skips_exon 11612162-11613978 asmbl_27092,asmbl_27096 // Exon Skipping and Retention # skipped_exon 11612162-11613978 (orient:-) max_ev_support = 1 # retained_exon 11613242-11613370 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11613242-11613370 asmbl_27094,asmbl_27095 scaffold_20 - intron_skips_exon 11612162-11613978 asmbl_27092,asmbl_27096 // Retained and Spliced Intron # retained_intron 11597678-11597826 (orient:-) max_ev_support = 1 # spliced_intron 11597678-11597826 (orient:-) max_ev_support = 1 scaffold_20 - intron 11597678-11597826 asmbl_27092,asmbl_27096 scaffold_20 - retained_intron 11597678-11597826 asmbl_27095 // Retained and Spliced Intron # retained_intron 11599629-11600426 (orient:-) max_ev_support = 1 # spliced_intron 11599629-11600426 (orient:-) max_ev_support = 1 scaffold_20 - intron 11599629-11600426 asmbl_27092 scaffold_20 - retained_intron 11599629-11600426 asmbl_27095 // Retained and Spliced Intron # retained_intron 11599629-11600558 (orient:-) max_ev_support = 1 # spliced_intron 11599629-11600558 (orient:-) max_ev_support = 1 scaffold_20 - intron 11599629-11600558 asmbl_27096 scaffold_20 - retained_intron 11599629-11600558 asmbl_27095 // Retained and Spliced Intron # retained_intron 11600445-11600558 (orient:-) max_ev_support = 1 # spliced_intron 11600445-11600558 (orient:-) max_ev_support = 1 scaffold_20 - intron 11600445-11600558 asmbl_27092 scaffold_20 - retained_intron 11600445-11600558 asmbl_27095 // Exon Skipping and Retention # skipped_exon 11672198-11673842 (orient:-) max_ev_support = 2 # retained_exon 11672272-11672377 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 11672272-11672377 asmbl_27098,asmbl_27099 scaffold_20 - intron_skips_exon 11672198-11673842 asmbl_27101 // Retained and Spliced Intron # retained_intron 11672168-11672271 (orient:-) max_ev_support = 2 # spliced_intron 11672168-11672271 (orient:-) max_ev_support = 2 scaffold_20 - intron 11672168-11672271 asmbl_27099 scaffold_20 - retained_intron 11672168-11672271 asmbl_27100 // Retained and Spliced Intron # retained_intron 11672198-11672271 (orient:-) max_ev_support = 2 # spliced_intron 11672198-11672271 (orient:-) max_ev_support = 2 scaffold_20 - intron 11672198-11672271 asmbl_27098,asmbl_27103 scaffold_20 - retained_intron 11672198-11672271 asmbl_27100 // Retained and Spliced Intron # retained_intron 11678784-11679288 (orient:-) max_ev_support = 2 # spliced_intron 11678784-11679288 (orient:-) max_ev_support = 2 scaffold_20 - intron 11678784-11679288 asmbl_27105 scaffold_20 - retained_intron 11678784-11679288 asmbl_27106,asmbl_27108 // Retained and Spliced Intron # retained_intron 11678784-11679395 (orient:-) max_ev_support = 2 # spliced_intron 11678784-11679395 (orient:-) max_ev_support = 2 scaffold_20 - intron 11678784-11679395 asmbl_27107 scaffold_20 - retained_intron 11678784-11679395 asmbl_27106,asmbl_27108 // Retained and Spliced Intron # retained_intron 11682548-11683305 (orient:-) max_ev_support = 2 # spliced_intron 11682548-11683305 (orient:-) max_ev_support = 2 scaffold_20 - intron 11682548-11683305 asmbl_27109 scaffold_20 - retained_intron 11682548-11683305 asmbl_27110 // Retained and Spliced Intron # retained_intron 11695106-11695323 (orient:-) max_ev_support = 1 # spliced_intron 11695106-11695323 (orient:-) max_ev_support = 1 scaffold_20 - intron 11695106-11695323 asmbl_27115 scaffold_20 - retained_intron 11695106-11695323 asmbl_27116 // Retained and Spliced Intron # retained_intron 11695106-11695430 (orient:-) max_ev_support = 1 # spliced_intron 11695106-11695430 (orient:-) max_ev_support = 2 scaffold_20 - intron 11695106-11695430 asmbl_27113 scaffold_20 - retained_intron 11695106-11695430 asmbl_27116 // Retained and Spliced Intron # retained_intron 11744401-11744588 (orient:-) max_ev_support = 3 # spliced_intron 11744401-11744588 (orient:-) max_ev_support = 2 scaffold_20 - intron 11744401-11744588 asmbl_27119 scaffold_20 - retained_intron 11744401-11744588 asmbl_27118 // Retained and Spliced Intron # retained_intron 11743342-11743680 (orient:-) max_ev_support = 1 # spliced_intron 11743342-11743680 (orient:-) max_ev_support = 2 scaffold_20 - intron 11743342-11743680 asmbl_27119 scaffold_20 - retained_intron 11743342-11743680 asmbl_27120 // Retained and Spliced Intron # retained_intron 11942421-11942684 (orient:-) max_ev_support = 1 # spliced_intron 11942421-11942684 (orient:-) max_ev_support = 2 scaffold_20 - intron 11942421-11942684 asmbl_27128,asmbl_27129 scaffold_20 - retained_intron 11942421-11942684 asmbl_27131 // Retained and Spliced Intron # retained_intron 11948483-11948577 (orient:-) max_ev_support = 2 # spliced_intron 11948483-11948577 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948483-11948577 asmbl_27134 scaffold_20 - retained_intron 11948483-11948577 asmbl_27132,asmbl_27133 // Retained and Spliced Intron # retained_intron 11948483-11948717 (orient:-) max_ev_support = 2 # spliced_intron 11948483-11948717 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948483-11948717 asmbl_27135,asmbl_27136 scaffold_20 - retained_intron 11948483-11948717 asmbl_27132 // Retained and Spliced Intron # retained_intron 11948625-11948717 (orient:-) max_ev_support = 2 # spliced_intron 11948625-11948717 (orient:-) max_ev_support = 1 scaffold_20 - intron 11948625-11948717 asmbl_27133,asmbl_27134 scaffold_20 - retained_intron 11948625-11948717 asmbl_27132 // Exon Skipping and Retention # skipped_exon 11948483-11948717 (orient:-) max_ev_support = 1 # retained_exon 11948578-11948624 (orient:-) max_ev_support = 1 scaffold_20 - retained_exons 11948578-11948624 asmbl_27134 scaffold_20 - intron_skips_exon 11948483-11948717 asmbl_27135,asmbl_27136 // Retained and Spliced Intron # retained_intron 11950865-11950950 (orient:-) max_ev_support = 1 # spliced_intron 11950865-11950950 (orient:-) max_ev_support = 1 scaffold_20 - intron 11950865-11950950 asmbl_27134,asmbl_27136 scaffold_20 - retained_intron 11950865-11950950 asmbl_27135 // Exon Skipping and Retention # skipped_exon 12074725-12075218 (orient:-) max_ev_support = 1 # retained_exon 12074890-12074997 (orient:-) max_ev_support = 2 scaffold_20 - retained_exons 12074890-12074997 asmbl_27140,asmbl_27142 scaffold_20 - intron_skips_exon 12074725-12075218 asmbl_27143 // Retained and Spliced Intron # retained_intron 12075926-12076083 (orient:-) max_ev_support = 2 # spliced_intron 12075926-12076083 (orient:-) max_ev_support = 2 scaffold_20 - intron 12075926-12076083 asmbl_27140,asmbl_27142,asmbl_27144 scaffold_20 - retained_intron 12075926-12076083 asmbl_27141 // Retained and Spliced Intron # retained_intron 12076152-12076237 (orient:-) max_ev_support = 2 # spliced_intron 12076152-12076237 (orient:-) max_ev_support = 2 scaffold_20 - intron 12076152-12076237 asmbl_27140,asmbl_27144 scaffold_20 - retained_intron 12076152-12076237 asmbl_27141,asmbl_27142 // Retained and Spliced Intron # retained_intron 12074998-12075218 (orient:-) max_ev_support = 1 # spliced_intron 12074998-12075218 (orient:-) max_ev_support = 2 scaffold_20 - intron 12074998-12075218 asmbl_27140,asmbl_27142 scaffold_20 - retained_intron 12074998-12075218 asmbl_27144 // Retained and Spliced Intron # retained_intron 12095031-12095381 (orient:-) max_ev_support = 2 # spliced_intron 12095031-12095381 (orient:-) max_ev_support = 2 scaffold_20 - intron 12095031-12095381 asmbl_27146 scaffold_20 - retained_intron 12095031-12095381 asmbl_27147 // Exon Skipping and Retention # skipped_exon 58137-58705 (orient:-) max_ev_support = 2 # retained_exon 58223-58306 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 58223-58306 asmbl_27298,asmbl_27300 scaffold_21 - intron_skips_exon 58137-58705 asmbl_27299 // Exon Skipping and Retention # skipped_exon 233295-234074 (orient:-) max_ev_support = 3 # retained_exon 233469-233520 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 233469-233520 asmbl_27308 scaffold_21 - intron_skips_exon 233295-234074 asmbl_27309 // Retained and Spliced Intron # retained_intron 233295-233468 (orient:-) max_ev_support = 2 # spliced_intron 233295-233468 (orient:-) max_ev_support = 3 scaffold_21 - intron 233295-233468 asmbl_27308 scaffold_21 - retained_intron 233295-233468 asmbl_27310 // Retained and Spliced Intron # retained_intron 254930-255185 (orient:-) max_ev_support = 3 # spliced_intron 254930-255185 (orient:-) max_ev_support = 2 scaffold_21 - intron 254930-255185 asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27318,asmbl_27319,asmbl_27323,asmbl_27324 scaffold_21 - retained_intron 254930-255185 asmbl_27312,asmbl_27317,asmbl_27322 // Retained and Spliced Intron # retained_intron 255225-255467 (orient:-) max_ev_support = 3 # spliced_intron 255225-255467 (orient:-) max_ev_support = 2 scaffold_21 - intron 255225-255467 asmbl_27313,asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27317,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27322,asmbl_27323,asmbl_27324,asmbl_27325 scaffold_21 - retained_intron 255225-255467 asmbl_27312 // Retained and Spliced Intron # retained_intron 255543-255961 (orient:-) max_ev_support = 3 # spliced_intron 255543-255961 (orient:-) max_ev_support = 2 scaffold_21 - intron 255543-255961 asmbl_27314,asmbl_27315,asmbl_27316,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27322,asmbl_27323,asmbl_27324,asmbl_27325 scaffold_21 - retained_intron 255543-255961 asmbl_27312,asmbl_27313,asmbl_27317 // Exon Skipping and Retention # skipped_exon 256225-257073 (orient:-) max_ev_support = 2 # retained_exon 256485-256535 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 256485-256535 asmbl_27313,asmbl_27322,asmbl_27323 scaffold_21 - intron_skips_exon 256225-257073 asmbl_27316 // Retained and Spliced Intron # retained_intron 256742-257073 (orient:-) max_ev_support = 3 # spliced_intron 256742-257073 (orient:-) max_ev_support = 2 scaffold_21 - intron 256742-257073 asmbl_27314,asmbl_27315,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27321 scaffold_21 - retained_intron 256742-257073 asmbl_27313,asmbl_27317,asmbl_27322,asmbl_27323 // Retained and Spliced Intron # retained_intron 256225-256484 (orient:-) max_ev_support = 2 # spliced_intron 256225-256484 (orient:-) max_ev_support = 3 scaffold_21 - intron 256225-256484 asmbl_27313,asmbl_27314,asmbl_27315,asmbl_27318,asmbl_27319,asmbl_27320,asmbl_27321,asmbl_27322,asmbl_27323 scaffold_21 - retained_intron 256225-256484 asmbl_27317 // Exon Skipping and Retention # skipped_exon 402180-403833 (orient:-) max_ev_support = 1 # retained_exon 402606-403222 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 402606-402684,402825-402915,403141-403222 asmbl_27332 scaffold_21 - intron_skips_exon 402180-403833 asmbl_27337 // Retained and Spliced Intron # retained_intron 405731-406300 (orient:-) max_ev_support = 3 # spliced_intron 405731-406300 (orient:-) max_ev_support = 3 scaffold_21 - intron 405731-406300 asmbl_27340,asmbl_27341 scaffold_21 - retained_intron 405731-406300 asmbl_27338,asmbl_27339,asmbl_27342,asmbl_27343 // Retained and Spliced Intron # retained_intron 405731-406307 (orient:-) max_ev_support = 3 # spliced_intron 405731-406307 (orient:-) max_ev_support = 1 scaffold_21 - intron 405731-406307 asmbl_27344,asmbl_27345 scaffold_21 - retained_intron 405731-406307 asmbl_27338,asmbl_27339,asmbl_27342,asmbl_27343 // Retained and Spliced Intron # retained_intron 407848-408231 (orient:-) max_ev_support = 3 # spliced_intron 407848-408231 (orient:-) max_ev_support = 3 scaffold_21 - intron 407848-408231 asmbl_27339,asmbl_27341,asmbl_27343 scaffold_21 - retained_intron 407848-408231 asmbl_27338,asmbl_27340,asmbl_27342,asmbl_27344,asmbl_27345 // Retained and Spliced Intron # retained_intron 406429-406790 (orient:-) max_ev_support = 2 # spliced_intron 406429-406790 (orient:-) max_ev_support = 3 scaffold_21 - intron 406429-406790 asmbl_27338,asmbl_27339,asmbl_27340,asmbl_27341,asmbl_27345 scaffold_21 - retained_intron 406429-406790 asmbl_27342,asmbl_27343,asmbl_27344 // Retained and Spliced Intron # retained_intron 457511-457733 (orient:-) max_ev_support = 2 # spliced_intron 457511-457733 (orient:-) max_ev_support = 2 scaffold_21 - intron 457511-457733 asmbl_27350 scaffold_21 - retained_intron 457511-457733 asmbl_27351 // Retained and Spliced Intron # retained_intron 457059-457190 (orient:-) max_ev_support = 1 # spliced_intron 457059-457190 (orient:-) max_ev_support = 2 scaffold_21 - intron 457059-457190 asmbl_27350 scaffold_21 - retained_intron 457059-457190 asmbl_27352,asmbl_27353 // Retained and Spliced Intron # retained_intron 495998-496253 (orient:-) max_ev_support = 2 # spliced_intron 495998-496253 (orient:-) max_ev_support = 3 scaffold_21 - intron 495998-496253 asmbl_27357 scaffold_21 - retained_intron 495998-496253 asmbl_27358 // Retained and Spliced Intron # retained_intron 705967-706986 (orient:-) max_ev_support = 4 # spliced_intron 705967-706986 (orient:-) max_ev_support = 2 scaffold_21 - intron 705967-706986 asmbl_27380 scaffold_21 - retained_intron 705967-706986 asmbl_27378 // Retained and Spliced Intron # retained_intron 706527-706986 (orient:-) max_ev_support = 2 # spliced_intron 706527-706986 (orient:-) max_ev_support = 2 scaffold_21 - intron 706527-706986 asmbl_27377 scaffold_21 - retained_intron 706527-706986 asmbl_27378 // Retained and Spliced Intron # retained_intron 1054629-1054775 (orient:-) max_ev_support = 2 # spliced_intron 1054629-1054775 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054629-1054775 asmbl_27404,asmbl_27407 scaffold_21 - retained_intron 1054629-1054775 asmbl_27400,asmbl_27402,asmbl_27405,asmbl_27406,asmbl_27408 // Retained and Spliced Intron # retained_intron 1053775-1054170 (orient:-) max_ev_support = 2 # spliced_intron 1053775-1054170 (orient:-) max_ev_support = 2 scaffold_21 - intron 1053775-1054170 asmbl_27402,asmbl_27405 scaffold_21 - retained_intron 1053775-1054170 asmbl_27401,asmbl_27404,asmbl_27407,asmbl_27408 // Retained and Spliced Intron # retained_intron 1053818-1053982 (orient:-) max_ev_support = 2 # spliced_intron 1053818-1053982 (orient:-) max_ev_support = 2 scaffold_21 - intron 1053818-1053982 asmbl_27400,asmbl_27406 scaffold_21 - retained_intron 1053818-1053982 asmbl_27401,asmbl_27404,asmbl_27407,asmbl_27408 // Retained and Spliced Intron # retained_intron 1054388-1054549 (orient:-) max_ev_support = 2 # spliced_intron 1054388-1054549 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054388-1054549 asmbl_27400,asmbl_27405,asmbl_27408 scaffold_21 - retained_intron 1054388-1054549 asmbl_27401 // Retained and Spliced Intron # retained_intron 1054388-1054575 (orient:-) max_ev_support = 2 # spliced_intron 1054388-1054575 (orient:-) max_ev_support = 2 scaffold_21 - intron 1054388-1054575 asmbl_27402,asmbl_27404,asmbl_27406,asmbl_27407 scaffold_21 - retained_intron 1054388-1054575 asmbl_27401 // Retained and Spliced Intron # retained_intron 1171743-1171837 (orient:-) max_ev_support = 1 # spliced_intron 1171743-1171837 (orient:-) max_ev_support = 2 scaffold_21 - intron 1171743-1171837 asmbl_27409,asmbl_27411 scaffold_21 - retained_intron 1171743-1171837 asmbl_27410 // Retained and Spliced Intron # retained_intron 1272146-1272171 (orient:-) max_ev_support = 1 # spliced_intron 1272146-1272171 (orient:-) max_ev_support = 1 scaffold_21 - intron 1272146-1272171 asmbl_27424 scaffold_21 - retained_intron 1272146-1272171 asmbl_27423 // Retained and Spliced Intron # retained_intron 1300424-1301225 (orient:-) max_ev_support = 3 # spliced_intron 1300424-1301225 (orient:-) max_ev_support = 3 scaffold_21 - intron 1300424-1301225 asmbl_27430,asmbl_27434 scaffold_21 - retained_intron 1300424-1301225 asmbl_27431,asmbl_27432,asmbl_27433 // Retained and Spliced Intron # retained_intron 1861553-1861668 (orient:-) max_ev_support = 1 # spliced_intron 1861553-1861668 (orient:-) max_ev_support = 2 scaffold_21 - intron 1861553-1861668 asmbl_27450 scaffold_21 - retained_intron 1861553-1861668 asmbl_27451 // Exon Skipping and Retention # skipped_exon 2165861-2166831 (orient:-) max_ev_support = 1 # retained_exon 2166517-2166597 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 2166517-2166597 asmbl_27459,asmbl_27461,asmbl_27462 scaffold_21 - intron_skips_exon 2165861-2166831 asmbl_27460 // Retained and Spliced Intron # retained_intron 2162273-2162399 (orient:-) max_ev_support = 1 # spliced_intron 2162273-2162399 (orient:-) max_ev_support = 2 scaffold_21 - intron 2162273-2162399 asmbl_27459 scaffold_21 - retained_intron 2162273-2162399 asmbl_27461 // Retained and Spliced Intron # retained_intron 2324183-2324268 (orient:-) max_ev_support = 3 # spliced_intron 2324183-2324268 (orient:-) max_ev_support = 1 scaffold_21 - intron 2324183-2324268 asmbl_27472 scaffold_21 - retained_intron 2324183-2324268 asmbl_27471 // Exon Skipping and Retention # skipped_exon 2468544-2469885 (orient:-) max_ev_support = 1 # retained_exon 2469229-2469270 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 2469229-2469270 asmbl_27481,asmbl_27482,asmbl_27485 scaffold_21 - intron_skips_exon 2468544-2469885 asmbl_27484 // Retained and Spliced Intron # retained_intron 2470395-2470715 (orient:-) max_ev_support = 3 # spliced_intron 2470395-2470715 (orient:-) max_ev_support = 3 scaffold_21 - intron 2470395-2470715 asmbl_27482,asmbl_27485 scaffold_21 - retained_intron 2470395-2470715 asmbl_27481,asmbl_27484,asmbl_27488 // Retained and Spliced Intron # retained_intron 2475393-2475501 (orient:-) max_ev_support = 3 # spliced_intron 2475393-2475501 (orient:-) max_ev_support = 3 scaffold_21 - intron 2475393-2475501 asmbl_27481,asmbl_27484,asmbl_27485 scaffold_21 - retained_intron 2475393-2475501 asmbl_27482 // Retained and Spliced Intron # retained_intron 2654346-2654440 (orient:-) max_ev_support = 2 # spliced_intron 2654346-2654440 (orient:-) max_ev_support = 1 scaffold_21 - intron 2654346-2654440 asmbl_27516 scaffold_21 - retained_intron 2654346-2654440 asmbl_27510,asmbl_27512,asmbl_27513,asmbl_27515 // Retained and Spliced Intron # retained_intron 2654346-2654855 (orient:-) max_ev_support = 2 # spliced_intron 2654346-2654855 (orient:-) max_ev_support = 3 scaffold_21 - intron 2654346-2654855 asmbl_27509,asmbl_27511 scaffold_21 - retained_intron 2654346-2654855 asmbl_27510,asmbl_27512,asmbl_27513,asmbl_27515 // Retained and Spliced Intron # retained_intron 2654905-2655051 (orient:-) max_ev_support = 2 # spliced_intron 2654905-2655051 (orient:-) max_ev_support = 3 scaffold_21 - intron 2654905-2655051 asmbl_27509,asmbl_27511,asmbl_27512,asmbl_27515,asmbl_27516 scaffold_21 - retained_intron 2654905-2655051 asmbl_27510,asmbl_27513 // Retained and Spliced Intron # retained_intron 2947813-2947912 (orient:-) max_ev_support = 3 # spliced_intron 2947813-2947912 (orient:-) max_ev_support = 1 scaffold_21 - intron 2947813-2947912 asmbl_27522 scaffold_21 - retained_intron 2947813-2947912 asmbl_27519 // Retained and Spliced Intron # retained_intron 2946480-2946674 (orient:-) max_ev_support = 2 # spliced_intron 2946480-2946674 (orient:-) max_ev_support = 3 scaffold_21 - intron 2946480-2946674 asmbl_27519,asmbl_27520,asmbl_27522 scaffold_21 - retained_intron 2946480-2946674 asmbl_27521 // Retained and Spliced Intron # retained_intron 3112262-3112397 (orient:-) max_ev_support = 1 # spliced_intron 3112262-3112397 (orient:-) max_ev_support = 2 scaffold_21 - intron 3112262-3112397 asmbl_27533,asmbl_27535 scaffold_21 - retained_intron 3112262-3112397 asmbl_27534,asmbl_27536 // Retained and Spliced Intron # retained_intron 3112080-3112167 (orient:-) max_ev_support = 1 # spliced_intron 3112080-3112167 (orient:-) max_ev_support = 2 scaffold_21 - intron 3112080-3112167 asmbl_27533,asmbl_27534,asmbl_27535 scaffold_21 - retained_intron 3112080-3112167 asmbl_27536 // Retained and Spliced Intron # retained_intron 3117600-3118195 (orient:-) max_ev_support = 3 # spliced_intron 3117600-3118195 (orient:-) max_ev_support = 1 scaffold_21 - intron 3117600-3118195 asmbl_27538 scaffold_21 - retained_intron 3117600-3118195 asmbl_27537 // Exon Skipping and Retention # skipped_exon 3126012-3126710 (orient:-) max_ev_support = 2 # retained_exon 3126397-3126458 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 3126397-3126458 asmbl_27540,asmbl_27543 scaffold_21 - intron_skips_exon 3126012-3126710 asmbl_27539 // Retained and Spliced Intron # retained_intron 3726877-3726965 (orient:-) max_ev_support = 1 # spliced_intron 3726877-3726965 (orient:-) max_ev_support = 2 scaffold_21 - intron 3726877-3726965 asmbl_27554,asmbl_27555,asmbl_27557 scaffold_21 - retained_intron 3726877-3726965 asmbl_27559 // Exon Skipping and Retention # skipped_exon 3824094-3826309 (orient:-) max_ev_support = 2 # retained_exon 3824283-3824342 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 3824283-3824342 asmbl_27574,asmbl_27579 scaffold_21 - intron_skips_exon 3824094-3826309 asmbl_27573,asmbl_27578 // Retained and Spliced Intron # retained_intron 3824094-3824282 (orient:-) max_ev_support = 2 # spliced_intron 3824094-3824282 (orient:-) max_ev_support = 2 scaffold_21 - intron 3824094-3824282 asmbl_27574,asmbl_27579 scaffold_21 - retained_intron 3824094-3824282 asmbl_27575,asmbl_27576 // Retained and Spliced Intron # retained_intron 4649422-4649538 (orient:-) max_ev_support = 1 # spliced_intron 4649422-4649538 (orient:-) max_ev_support = 2 scaffold_21 - intron 4649422-4649538 asmbl_27603 scaffold_21 - retained_intron 4649422-4649538 asmbl_27604 // Exon Skipping and Retention # skipped_exon 4662859-4664245 (orient:-) max_ev_support = 1 # retained_exon 4663693-4663832 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 4663693-4663832 asmbl_27609 scaffold_21 - intron_skips_exon 4662859-4664245 asmbl_27608 // Retained and Spliced Intron # retained_intron 4967429-4967605 (orient:-) max_ev_support = 1 # spliced_intron 4967429-4967605 (orient:-) max_ev_support = 3 scaffold_21 - intron 4967429-4967605 asmbl_27627 scaffold_21 - retained_intron 4967429-4967605 asmbl_27628 // Retained and Spliced Intron # retained_intron 5110399-5110504 (orient:-) max_ev_support = 1 # spliced_intron 5110399-5110504 (orient:-) max_ev_support = 2 scaffold_21 - intron 5110399-5110504 asmbl_27630 scaffold_21 - retained_intron 5110399-5110504 asmbl_27631 // Retained and Spliced Intron # retained_intron 5110609-5110692 (orient:-) max_ev_support = 1 # spliced_intron 5110609-5110692 (orient:-) max_ev_support = 2 scaffold_21 - intron 5110609-5110692 asmbl_27630 scaffold_21 - retained_intron 5110609-5110692 asmbl_27631 // Retained and Spliced Intron # retained_intron 5138274-5138792 (orient:-) max_ev_support = 1 # spliced_intron 5138274-5138792 (orient:-) max_ev_support = 1 scaffold_21 - intron 5138274-5138792 asmbl_27634 scaffold_21 - retained_intron 5138274-5138792 asmbl_27635,asmbl_27638 // Retained and Spliced Intron # retained_intron 5137245-5137358 (orient:-) max_ev_support = 1 # spliced_intron 5137245-5137358 (orient:-) max_ev_support = 1 scaffold_21 - intron 5137245-5137358 asmbl_27634,asmbl_27635 scaffold_21 - retained_intron 5137245-5137358 asmbl_27638 // Retained and Spliced Intron # retained_intron 5153424-5153601 (orient:-) max_ev_support = 2 # spliced_intron 5153424-5153601 (orient:-) max_ev_support = 1 scaffold_21 - intron 5153424-5153601 asmbl_27644 scaffold_21 - retained_intron 5153424-5153601 asmbl_27643 // Retained and Spliced Intron # retained_intron 5170097-5170194 (orient:-) max_ev_support = 2 # spliced_intron 5170097-5170194 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170097-5170194 asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651 scaffold_21 - retained_intron 5170097-5170194 asmbl_27647,asmbl_27652 // Retained and Spliced Intron # retained_intron 5170315-5170410 (orient:-) max_ev_support = 2 # spliced_intron 5170315-5170410 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170315-5170410 asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651 scaffold_21 - retained_intron 5170315-5170410 asmbl_27647,asmbl_27652 // Retained and Spliced Intron # retained_intron 5170519-5170660 (orient:-) max_ev_support = 2 # spliced_intron 5170519-5170660 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170519-5170660 asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651,asmbl_27652 scaffold_21 - retained_intron 5170519-5170660 asmbl_27647 // Retained and Spliced Intron # retained_intron 5169771-5169934 (orient:-) max_ev_support = 1 # spliced_intron 5169771-5169934 (orient:-) max_ev_support = 2 scaffold_21 - intron 5169771-5169934 asmbl_27646,asmbl_27650,asmbl_27651 scaffold_21 - retained_intron 5169771-5169934 asmbl_27649 // Retained and Spliced Intron # retained_intron 5171404-5171760 (orient:-) max_ev_support = 1 # spliced_intron 5171404-5171760 (orient:-) max_ev_support = 2 scaffold_21 - intron 5171404-5171760 asmbl_27646,asmbl_27649,asmbl_27651 scaffold_21 - retained_intron 5171404-5171760 asmbl_27650 // Retained and Spliced Intron # retained_intron 5170787-5170985 (orient:-) max_ev_support = 1 # spliced_intron 5170787-5170985 (orient:-) max_ev_support = 2 scaffold_21 - intron 5170787-5170985 asmbl_27646,asmbl_27649,asmbl_27650,asmbl_27651 scaffold_21 - retained_intron 5170787-5170985 asmbl_27652 // Retained and Spliced Intron # retained_intron 5279754-5280675 (orient:-) max_ev_support = 2 # spliced_intron 5279754-5280675 (orient:-) max_ev_support = 2 scaffold_21 - intron 5279754-5280675 asmbl_27665 scaffold_21 - retained_intron 5279754-5280675 asmbl_27663,asmbl_27664,asmbl_27667 // Exon Skipping and Retention # skipped_exon 5279754-5281553 (orient:-) max_ev_support = 2 # retained_exon 5280676-5280791 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5280676-5280791 asmbl_27665 scaffold_21 - intron_skips_exon 5279754-5281553 asmbl_27666 // Retained and Spliced Intron # retained_intron 5468667-5468783 (orient:-) max_ev_support = 1 # spliced_intron 5468667-5468783 (orient:-) max_ev_support = 2 scaffold_21 - intron 5468667-5468783 asmbl_27680,asmbl_27681 scaffold_21 - retained_intron 5468667-5468783 asmbl_27682 // Exon Skipping and Retention # skipped_exon 5518491-5519924 (orient:-) max_ev_support = 1 # retained_exon 5519284-5519377 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5519284-5519377 asmbl_27687 scaffold_21 - intron_skips_exon 5518491-5519924 asmbl_27691 // Exon Skipping and Retention # skipped_exon 5519378-5520424 (orient:-) max_ev_support = 2 # retained_exon 5519925-5520018 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 5519925-5520018 asmbl_27691 scaffold_21 - intron_skips_exon 5519378-5520424 asmbl_27687 // Retained and Spliced Intron # retained_intron 5532922-5533006 (orient:-) max_ev_support = 1 # spliced_intron 5532922-5533006 (orient:-) max_ev_support = 1 scaffold_21 - intron 5532922-5533006 asmbl_27697 scaffold_21 - retained_intron 5532922-5533006 asmbl_27696 // Retained and Spliced Intron # retained_intron 5536369-5536490 (orient:-) max_ev_support = 2 # spliced_intron 5536369-5536490 (orient:-) max_ev_support = 1 scaffold_21 - intron 5536369-5536490 asmbl_27700,asmbl_27702,asmbl_27703,asmbl_27705 scaffold_21 - retained_intron 5536369-5536490 asmbl_27698,asmbl_27699,asmbl_27701,asmbl_27704 // Retained and Spliced Intron # retained_intron 5536672-5536770 (orient:-) max_ev_support = 2 # spliced_intron 5536672-5536770 (orient:-) max_ev_support = 1 scaffold_21 - intron 5536672-5536770 asmbl_27700,asmbl_27702,asmbl_27704,asmbl_27705 scaffold_21 - retained_intron 5536672-5536770 asmbl_27698,asmbl_27699,asmbl_27701,asmbl_27703 // Retained and Spliced Intron # retained_intron 5536873-5536964 (orient:-) max_ev_support = 2 # spliced_intron 5536873-5536964 (orient:-) max_ev_support = 1 scaffold_21 - intron 5536873-5536964 asmbl_27699,asmbl_27700,asmbl_27702,asmbl_27703,asmbl_27704,asmbl_27705 scaffold_21 - retained_intron 5536873-5536964 asmbl_27698,asmbl_27701 // Retained and Spliced Intron # retained_intron 5537163-5537307 (orient:-) max_ev_support = 2 # spliced_intron 5537163-5537307 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537163-5537307 asmbl_27704,asmbl_27705 scaffold_21 - retained_intron 5537163-5537307 asmbl_27698,asmbl_27699,asmbl_27700,asmbl_27701,asmbl_27702,asmbl_27703 // Retained and Spliced Intron # retained_intron 5537513-5537636 (orient:-) max_ev_support = 2 # spliced_intron 5537513-5537636 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537513-5537636 asmbl_27700,asmbl_27701,asmbl_27705 scaffold_21 - retained_intron 5537513-5537636 asmbl_27698,asmbl_27699,asmbl_27702,asmbl_27703,asmbl_27704 // Retained and Spliced Intron # retained_intron 5537847-5538423 (orient:-) max_ev_support = 2 # spliced_intron 5537847-5538423 (orient:-) max_ev_support = 1 scaffold_21 - intron 5537847-5538423 asmbl_27700,asmbl_27701,asmbl_27705 scaffold_21 - retained_intron 5537847-5538423 asmbl_27698,asmbl_27702,asmbl_27703,asmbl_27704 // Retained and Spliced Intron # retained_intron 5594441-5594553 (orient:-) max_ev_support = 2 # spliced_intron 5594441-5594553 (orient:-) max_ev_support = 2 scaffold_21 - intron 5594441-5594553 asmbl_27706 scaffold_21 - retained_intron 5594441-5594553 asmbl_27707 // Retained and Spliced Intron # retained_intron 5594719-5594820 (orient:-) max_ev_support = 2 # spliced_intron 5594719-5594820 (orient:-) max_ev_support = 2 scaffold_21 - intron 5594719-5594820 asmbl_27706 scaffold_21 - retained_intron 5594719-5594820 asmbl_27707 // Retained and Spliced Intron # retained_intron 5598203-5598331 (orient:-) max_ev_support = 2 # spliced_intron 5598203-5598331 (orient:-) max_ev_support = 3 scaffold_21 - intron 5598203-5598331 asmbl_27708,asmbl_27709 scaffold_21 - retained_intron 5598203-5598331 asmbl_27710 // Exon Skipping and Retention # skipped_exon 5773985-5776476 (orient:-) max_ev_support = 2 # retained_exon 5774120-5774824 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5774120-5774263,5774666-5774824 asmbl_27719 scaffold_21 - intron_skips_exon 5773985-5776476 asmbl_27718,asmbl_27720,asmbl_27721 // Exon Skipping and Retention # skipped_exon 5774264-5776476 (orient:-) max_ev_support = 1 # retained_exon 5774666-5774824 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 5774666-5774824 asmbl_27719 scaffold_21 - intron_skips_exon 5774264-5776476 asmbl_27723 // Retained and Spliced Intron # retained_intron 5770329-5771473 (orient:-) max_ev_support = 1 # spliced_intron 5770329-5771473 (orient:-) max_ev_support = 2 scaffold_21 - intron 5770329-5771473 asmbl_27718,asmbl_27719,asmbl_27721,asmbl_27722,asmbl_27723 scaffold_21 - retained_intron 5770329-5771473 asmbl_27720 // Exon Skipping and Retention # skipped_exon 5773985-5776476 (orient:-) max_ev_support = 2 # retained_exon 5774120-5774263 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 5774120-5774263 asmbl_27723 scaffold_21 - intron_skips_exon 5773985-5776476 asmbl_27718,asmbl_27720,asmbl_27721 // Retained and Spliced Intron # retained_intron 5979198-5979219 (orient:-) max_ev_support = 1 # spliced_intron 5979198-5979219 (orient:-) max_ev_support = 1 scaffold_21 - intron 5979198-5979219 asmbl_27738 scaffold_21 - retained_intron 5979198-5979219 asmbl_27739,asmbl_27740 // Retained and Spliced Intron # retained_intron 5980259-5980363 (orient:-) max_ev_support = 1 # spliced_intron 5980259-5980363 (orient:-) max_ev_support = 1 scaffold_21 - intron 5980259-5980363 asmbl_27738,asmbl_27740 scaffold_21 - retained_intron 5980259-5980363 asmbl_27739 // Retained and Spliced Intron # retained_intron 7010245-7010833 (orient:-) max_ev_support = 2 # spliced_intron 7010245-7010833 (orient:-) max_ev_support = 2 scaffold_21 - intron 7010245-7010833 asmbl_27800 scaffold_21 - retained_intron 7010245-7010833 asmbl_27799 // Retained and Spliced Intron # retained_intron 7009179-7009301 (orient:-) max_ev_support = 1 # spliced_intron 7009179-7009301 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009179-7009301 asmbl_27799,asmbl_27800 scaffold_21 - retained_intron 7009179-7009301 asmbl_27801 // Retained and Spliced Intron # retained_intron 7009393-7009561 (orient:-) max_ev_support = 1 # spliced_intron 7009393-7009561 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009393-7009561 asmbl_27799,asmbl_27800 scaffold_21 - retained_intron 7009393-7009561 asmbl_27801 // Retained and Spliced Intron # retained_intron 7009648-7009840 (orient:-) max_ev_support = 1 # spliced_intron 7009648-7009840 (orient:-) max_ev_support = 2 scaffold_21 - intron 7009648-7009840 asmbl_27799,asmbl_27800 scaffold_21 - retained_intron 7009648-7009840 asmbl_27801 // Retained and Spliced Intron # retained_intron 7286601-7286692 (orient:-) max_ev_support = 1 # spliced_intron 7286601-7286692 (orient:-) max_ev_support = 3 scaffold_21 - intron 7286601-7286692 asmbl_27812,asmbl_27813 scaffold_21 - retained_intron 7286601-7286692 asmbl_27814 // Retained and Spliced Intron # retained_intron 7327012-7327159 (orient:-) max_ev_support = 1 # spliced_intron 7327012-7327159 (orient:-) max_ev_support = 2 scaffold_21 - intron 7327012-7327159 asmbl_27819 scaffold_21 - retained_intron 7327012-7327159 asmbl_27821 // Retained and Spliced Intron # retained_intron 7367840-7367962 (orient:-) max_ev_support = 2 # spliced_intron 7367840-7367962 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367840-7367962 asmbl_27823,asmbl_27825 scaffold_21 - retained_intron 7367840-7367962 asmbl_27824,asmbl_27826 // Retained and Spliced Intron # retained_intron 7367393-7367476 (orient:-) max_ev_support = 1 # spliced_intron 7367393-7367476 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367393-7367476 asmbl_27823,asmbl_27824 scaffold_21 - retained_intron 7367393-7367476 asmbl_27825,asmbl_27826 // Retained and Spliced Intron # retained_intron 7367729-7367814 (orient:-) max_ev_support = 1 # spliced_intron 7367729-7367814 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367729-7367814 asmbl_27823,asmbl_27824 scaffold_21 - retained_intron 7367729-7367814 asmbl_27825,asmbl_27826 // Retained and Spliced Intron # retained_intron 7367552-7367674 (orient:-) max_ev_support = 1 # spliced_intron 7367552-7367674 (orient:-) max_ev_support = 2 scaffold_21 - intron 7367552-7367674 asmbl_27823,asmbl_27824,asmbl_27825 scaffold_21 - retained_intron 7367552-7367674 asmbl_27826 // Retained and Spliced Intron # retained_intron 7426114-7426200 (orient:-) max_ev_support = 1 # spliced_intron 7426114-7426200 (orient:-) max_ev_support = 1 scaffold_21 - intron 7426114-7426200 asmbl_27830,asmbl_27831 scaffold_21 - retained_intron 7426114-7426200 asmbl_27832 // Retained and Spliced Intron # retained_intron 7502207-7502569 (orient:-) max_ev_support = 3 # spliced_intron 7502207-7502569 (orient:-) max_ev_support = 1 scaffold_21 - intron 7502207-7502569 asmbl_27850,asmbl_27852 scaffold_21 - retained_intron 7502207-7502569 asmbl_27849,asmbl_27851,asmbl_27853 // Retained and Spliced Intron # retained_intron 7503362-7503507 (orient:-) max_ev_support = 1 # spliced_intron 7503362-7503507 (orient:-) max_ev_support = 3 scaffold_21 - intron 7503362-7503507 asmbl_27849,asmbl_27850,asmbl_27852,asmbl_27853 scaffold_21 - retained_intron 7503362-7503507 asmbl_27851 // Retained and Spliced Intron # retained_intron 7507874-7507982 (orient:-) max_ev_support = 2 # spliced_intron 7507874-7507982 (orient:-) max_ev_support = 2 scaffold_21 - intron 7507874-7507982 asmbl_27855 scaffold_21 - retained_intron 7507874-7507982 asmbl_27854 // Retained and Spliced Intron # retained_intron 7508102-7508305 (orient:-) max_ev_support = 2 # spliced_intron 7508102-7508305 (orient:-) max_ev_support = 2 scaffold_21 - intron 7508102-7508305 asmbl_27855 scaffold_21 - retained_intron 7508102-7508305 asmbl_27854 // Exon Skipping and Retention # skipped_exon 7811690-7812846 (orient:-) max_ev_support = 1 # retained_exon 7812103-7812165 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 7812103-7812165 asmbl_27875 scaffold_21 - intron_skips_exon 7811690-7812846 asmbl_27874 // Retained and Spliced Intron # retained_intron 7825384-7825604 (orient:-) max_ev_support = 1 # spliced_intron 7825384-7825604 (orient:-) max_ev_support = 2 scaffold_21 - intron 7825384-7825604 asmbl_27879 scaffold_21 - retained_intron 7825384-7825604 asmbl_27880 // Retained and Spliced Intron # retained_intron 7914216-7914320 (orient:-) max_ev_support = 2 # spliced_intron 7914216-7914320 (orient:-) max_ev_support = 1 scaffold_21 - intron 7914216-7914320 asmbl_27885 scaffold_21 - retained_intron 7914216-7914320 asmbl_27884 // Exon Skipping and Retention # skipped_exon 7937048-7937954 (orient:-) max_ev_support = 1 # retained_exon 7937551-7937647 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 7937551-7937647 asmbl_27887 scaffold_21 - intron_skips_exon 7937048-7937954 asmbl_27890 // Retained and Spliced Intron # retained_intron 8000621-8001304 (orient:-) max_ev_support = 2 # spliced_intron 8000621-8001304 (orient:-) max_ev_support = 2 scaffold_21 - intron 8000621-8001304 asmbl_27900 scaffold_21 - retained_intron 8000621-8001304 asmbl_27901 // Retained and Spliced Intron # retained_intron 7999512-7999684 (orient:-) max_ev_support = 1 # spliced_intron 7999512-7999684 (orient:-) max_ev_support = 2 scaffold_21 - intron 7999512-7999684 asmbl_27898,asmbl_27899,asmbl_27900,asmbl_27901 scaffold_21 - retained_intron 7999512-7999684 asmbl_27904 // Retained and Spliced Intron # retained_intron 8086347-8086431 (orient:-) max_ev_support = 2 # spliced_intron 8086347-8086431 (orient:-) max_ev_support = 2 scaffold_21 - intron 8086347-8086431 asmbl_27907 scaffold_21 - retained_intron 8086347-8086431 asmbl_27908 // Retained and Spliced Intron # retained_intron 8129161-8129599 (orient:-) max_ev_support = 3 # spliced_intron 8129161-8129599 (orient:-) max_ev_support = 1 scaffold_21 - intron 8129161-8129599 asmbl_27911,asmbl_27913 scaffold_21 - retained_intron 8129161-8129599 asmbl_27909 // Retained and Spliced Intron # retained_intron 8129161-8131427 (orient:-) max_ev_support = 7 # spliced_intron 8129161-8131427 (orient:-) max_ev_support = 2 scaffold_21 - intron 8129161-8131427 asmbl_27910,asmbl_27912,asmbl_27914 scaffold_21 - retained_intron 8129161-8131427 asmbl_27909 // Exon Skipping and Retention # skipped_exon 8129636-8132125 (orient:-) max_ev_support = 1 # retained_exon 8131428-8131454 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 8131428-8131454 asmbl_27910,asmbl_27912,asmbl_27914 scaffold_21 - intron_skips_exon 8129636-8132125 asmbl_27911 // Exon Skipping and Retention # skipped_exon 8129161-8131427 (orient:-) max_ev_support = 2 # retained_exon 8129600-8129635 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 8129600-8129635 asmbl_27911 scaffold_21 - intron_skips_exon 8129161-8131427 asmbl_27910,asmbl_27912,asmbl_27914 // Retained and Spliced Intron # retained_intron 8295961-8296045 (orient:-) max_ev_support = 2 # spliced_intron 8295961-8296045 (orient:-) max_ev_support = 2 scaffold_21 - intron 8295961-8296045 asmbl_27939 scaffold_21 - retained_intron 8295961-8296045 asmbl_27938 // Exon Skipping and Retention # skipped_exon 8538516-8539657 (orient:-) max_ev_support = 1 # retained_exon 8538971-8539090 (orient:-) max_ev_support = 4 scaffold_21 - retained_exons 8538971-8539090 asmbl_27949,asmbl_27950,asmbl_27951 scaffold_21 - intron_skips_exon 8538516-8539657 asmbl_27952 // Exon Skipping and Retention # skipped_exon 8971393-8974150 (orient:-) max_ev_support = 2 # retained_exon 8973582-8973638 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 8973582-8973638 asmbl_27966,asmbl_27967 scaffold_21 - intron_skips_exon 8971393-8974150 asmbl_27965,asmbl_27968 // Exon Skipping and Retention # skipped_exon 9706312-9707776 (orient:-) max_ev_support = 1 # retained_exon 9707077-9707192 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 9707077-9707192 asmbl_27982 scaffold_21 - intron_skips_exon 9706312-9707776 asmbl_27983 // Exon Skipping and Retention # skipped_exon 9705783-9707076 (orient:-) max_ev_support = 1 # retained_exon 9706196-9706311 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 9706196-9706311 asmbl_27983 scaffold_21 - intron_skips_exon 9705783-9707076 asmbl_27982 // Retained and Spliced Intron # retained_intron 9866643-9866822 (orient:-) max_ev_support = 1 # spliced_intron 9866643-9866822 (orient:-) max_ev_support = 1 scaffold_21 - intron 9866643-9866822 asmbl_27998 scaffold_21 - retained_intron 9866643-9866822 asmbl_27999 // Exon Skipping and Retention # skipped_exon 9924489-9926757 (orient:-) max_ev_support = 1 # retained_exon 9925221-9925389 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 9925221-9925389 asmbl_28011,asmbl_28015 scaffold_21 - intron_skips_exon 9924489-9926757 asmbl_28013 // Exon Skipping and Retention # skipped_exon 10004467-10005327 (orient:-) max_ev_support = 2 # retained_exon 10004994-10005017 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 10004994-10005017 asmbl_28023 scaffold_21 - intron_skips_exon 10004467-10005327 asmbl_28022 // Exon Skipping and Retention # skipped_exon 10173673-10174804 (orient:-) max_ev_support = 1 # retained_exon 10173988-10174046 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 10173988-10174046 asmbl_28037 scaffold_21 - intron_skips_exon 10173673-10174804 asmbl_28038 // Exon Skipping and Retention # skipped_exon 10250005-10251788 (orient:-) max_ev_support = 2 # retained_exon 10251262-10251308 (orient:-) max_ev_support = 3 scaffold_21 - retained_exons 10251262-10251308 asmbl_28039 scaffold_21 - intron_skips_exon 10250005-10251788 asmbl_28040 // Retained and Spliced Intron # retained_intron 10309452-10309508 (orient:-) max_ev_support = 2 # spliced_intron 10309452-10309508 (orient:-) max_ev_support = 1 scaffold_21 - intron 10309452-10309508 asmbl_28059 scaffold_21 - retained_intron 10309452-10309508 asmbl_28058 // Exon Skipping and Retention # skipped_exon 10329322-10330565 (orient:-) max_ev_support = 1 # retained_exon 10329938-10330394 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 10329938-10330045,10330316-10330394 asmbl_28062 scaffold_21 - intron_skips_exon 10329322-10330565 asmbl_28061 // Retained and Spliced Intron # retained_intron 10498503-10498605 (orient:-) max_ev_support = 2 # spliced_intron 10498503-10498605 (orient:-) max_ev_support = 2 scaffold_21 - intron 10498503-10498605 asmbl_28072,asmbl_28076 scaffold_21 - retained_intron 10498503-10498605 asmbl_28073 // Retained and Spliced Intron # retained_intron 10497854-10497950 (orient:-) max_ev_support = 1 # spliced_intron 10497854-10497950 (orient:-) max_ev_support = 2 scaffold_21 - intron 10497854-10497950 asmbl_28072,asmbl_28075 scaffold_21 - retained_intron 10497854-10497950 asmbl_28074,asmbl_28076 // Retained and Spliced Intron # retained_intron 10497987-10498087 (orient:-) max_ev_support = 1 # spliced_intron 10497987-10498087 (orient:-) max_ev_support = 2 scaffold_21 - intron 10497987-10498087 asmbl_28072,asmbl_28076 scaffold_21 - retained_intron 10497987-10498087 asmbl_28074,asmbl_28075 // Retained and Spliced Intron # retained_intron 10848260-10848466 (orient:-) max_ev_support = 2 # spliced_intron 10848260-10848466 (orient:-) max_ev_support = 2 scaffold_21 - intron 10848260-10848466 asmbl_28103 scaffold_21 - retained_intron 10848260-10848466 asmbl_28102 // Retained and Spliced Intron # retained_intron 11103380-11103507 (orient:-) max_ev_support = 4 # spliced_intron 11103380-11103507 (orient:-) max_ev_support = 1 scaffold_21 - intron 11103380-11103507 asmbl_28117 scaffold_21 - retained_intron 11103380-11103507 asmbl_28116 // Retained and Spliced Intron # retained_intron 11228603-11228728 (orient:-) max_ev_support = 2 # spliced_intron 11228603-11228728 (orient:-) max_ev_support = 1 scaffold_21 - intron 11228603-11228728 asmbl_28122 scaffold_21 - retained_intron 11228603-11228728 asmbl_28121 // Exon Skipping and Retention # skipped_exon 11272094-11272979 (orient:-) max_ev_support = 3 # retained_exon 11272769-11272852 (orient:-) max_ev_support = 2 scaffold_21 - retained_exons 11272769-11272852 asmbl_28138,asmbl_28140,asmbl_28141,asmbl_28142 scaffold_21 - intron_skips_exon 11272094-11272979 asmbl_28137 // Retained and Spliced Intron # retained_intron 11346303-11346361 (orient:-) max_ev_support = 1 # spliced_intron 11346303-11346361 (orient:-) max_ev_support = 1 scaffold_21 - intron 11346303-11346361 asmbl_28147,asmbl_28149 scaffold_21 - retained_intron 11346303-11346361 asmbl_28148 // Retained and Spliced Intron # retained_intron 11570695-11570754 (orient:-) max_ev_support = 1 # spliced_intron 11570695-11570754 (orient:-) max_ev_support = 1 scaffold_21 - intron 11570695-11570754 asmbl_28157 scaffold_21 - retained_intron 11570695-11570754 asmbl_28156 // Exon Skipping and Retention # skipped_exon 11670710-11672822 (orient:-) max_ev_support = 2 # retained_exon 11671525-11671560 (orient:-) max_ev_support = 1 scaffold_21 - retained_exons 11671525-11671560 asmbl_28163 scaffold_21 - intron_skips_exon 11670710-11672822 asmbl_28162 // Retained and Spliced Intron # retained_intron 11964407-11964472 (orient:-) max_ev_support = 2 # spliced_intron 11964407-11964472 (orient:-) max_ev_support = 1 scaffold_21 - intron 11964407-11964472 asmbl_28165 scaffold_21 - retained_intron 11964407-11964472 asmbl_28166 // Retained and Spliced Intron # retained_intron 473831-473938 (orient:+) max_ev_support = 1 # spliced_intron 473831-473938 (orient:+) max_ev_support = 2 scaffold_21 + intron 473831-473938 asmbl_28286,asmbl_28288 scaffold_21 + retained_intron 473831-473938 asmbl_28289 // Retained and Spliced Intron # retained_intron 524687-524895 (orient:+) max_ev_support = 2 # spliced_intron 524687-524895 (orient:+) max_ev_support = 2 scaffold_21 + intron 524687-524895 asmbl_28293 scaffold_21 + retained_intron 524687-524895 asmbl_28295 // Exon Skipping and Retention # skipped_exon 606869-609625 (orient:+) max_ev_support = 2 # retained_exon 608994-609074 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 608994-609074 asmbl_28302 scaffold_21 + intron_skips_exon 606869-609625 asmbl_28303 // Exon Skipping and Retention # skipped_exon 690867-692284 (orient:+) max_ev_support = 1 # retained_exon 691873-692016 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 691873-692016 asmbl_28305,asmbl_28304 scaffold_21 + intron_skips_exon 690867-692284 asmbl_28307 // Exon Skipping and Retention # skipped_exon 690867-693822 (orient:+) max_ev_support = 1 # retained_exon 691873-692016 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 691873-692016 asmbl_28305,asmbl_28304 scaffold_21 + intron_skips_exon 690867-693822 asmbl_28306 // Exon Skipping and Retention # skipped_exon 692017-694234 (orient:+) max_ev_support = 1 # retained_exon 693823-693966 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 693823-693966 asmbl_28306 scaffold_21 + intron_skips_exon 692017-694234 asmbl_28305 // Retained and Spliced Intron # retained_intron 730676-730999 (orient:+) max_ev_support = 3 # spliced_intron 730676-730999 (orient:+) max_ev_support = 1 scaffold_21 + intron 730676-730999 asmbl_28316 scaffold_21 + retained_intron 730676-730999 asmbl_28311 // Retained and Spliced Intron # retained_intron 730900-730999 (orient:+) max_ev_support = 1 # spliced_intron 730900-730999 (orient:+) max_ev_support = 3 scaffold_21 + intron 730900-730999 asmbl_28312,asmbl_28313 scaffold_21 + retained_intron 730900-730999 asmbl_28311 // Retained and Spliced Intron # retained_intron 731085-731446 (orient:+) max_ev_support = 3 # spliced_intron 731085-731446 (orient:+) max_ev_support = 3 scaffold_21 + intron 731085-731446 asmbl_28312,asmbl_28315,asmbl_28316 scaffold_21 + retained_intron 731085-731446 asmbl_28311 // Exon Skipping and Retention # skipped_exon 731085-731628 (orient:+) max_ev_support = 1 # retained_exon 731447-731519 (orient:+) max_ev_support = 3 scaffold_21 + retained_exons 731447-731519 asmbl_28312,asmbl_28315,asmbl_28316 scaffold_21 + intron_skips_exon 731085-731628 asmbl_28313 // Exon Skipping and Retention # skipped_exon 736707-738287 (orient:+) max_ev_support = 3 # retained_exon 737050-737193 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 737050-737193 asmbl_28318 scaffold_21 + intron_skips_exon 736707-738287 asmbl_28317 // Exon Skipping and Retention # skipped_exon 833405-835515 (orient:+) max_ev_support = 2 # retained_exon 834695-834853 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 834695-834853 asmbl_28331,asmbl_28334 scaffold_21 + intron_skips_exon 833405-835515 asmbl_28332,asmbl_28335 // Retained and Spliced Intron # retained_intron 1151006-1151165 (orient:+) max_ev_support = 2 # spliced_intron 1151006-1151165 (orient:+) max_ev_support = 3 scaffold_21 + intron 1151006-1151165 asmbl_28350 scaffold_21 + retained_intron 1151006-1151165 asmbl_28351 // Retained and Spliced Intron # retained_intron 1151006-1151179 (orient:+) max_ev_support = 2 # spliced_intron 1151006-1151179 (orient:+) max_ev_support = 1 scaffold_21 + intron 1151006-1151179 asmbl_28352 scaffold_21 + retained_intron 1151006-1151179 asmbl_28351 // Retained and Spliced Intron # retained_intron 1633782-1633907 (orient:+) max_ev_support = 2 # spliced_intron 1633782-1633907 (orient:+) max_ev_support = 2 scaffold_21 + intron 1633782-1633907 asmbl_28365 scaffold_21 + retained_intron 1633782-1633907 asmbl_28364 // Retained and Spliced Intron # retained_intron 1657218-1657472 (orient:+) max_ev_support = 2 # spliced_intron 1657218-1657472 (orient:+) max_ev_support = 3 scaffold_21 + intron 1657218-1657472 asmbl_28368,asmbl_28370,asmbl_28371,asmbl_28372 scaffold_21 + retained_intron 1657218-1657472 asmbl_28369,asmbl_28373 // Retained and Spliced Intron # retained_intron 1653679-1654377 (orient:+) max_ev_support = 2 # spliced_intron 1653679-1654377 (orient:+) max_ev_support = 3 scaffold_21 + intron 1653679-1654377 asmbl_28368,asmbl_28369 scaffold_21 + retained_intron 1653679-1654377 asmbl_28370,asmbl_28371 // Retained and Spliced Intron # retained_intron 1654469-1654866 (orient:+) max_ev_support = 2 # spliced_intron 1654469-1654866 (orient:+) max_ev_support = 3 scaffold_21 + intron 1654469-1654866 asmbl_28368,asmbl_28369 scaffold_21 + retained_intron 1654469-1654866 asmbl_28370,asmbl_28371 // Retained and Spliced Intron # retained_intron 1654934-1655150 (orient:+) max_ev_support = 2 # spliced_intron 1654934-1655150 (orient:+) max_ev_support = 3 scaffold_21 + intron 1654934-1655150 asmbl_28368,asmbl_28369,asmbl_28371 scaffold_21 + retained_intron 1654934-1655150 asmbl_28370 // Retained and Spliced Intron # retained_intron 1657024-1657137 (orient:+) max_ev_support = 2 # spliced_intron 1657024-1657137 (orient:+) max_ev_support = 3 scaffold_21 + intron 1657024-1657137 asmbl_28368,asmbl_28369,asmbl_28370,asmbl_28371,asmbl_28372 scaffold_21 + retained_intron 1657024-1657137 asmbl_28373 // Exon Skipping and Retention # skipped_exon 1679907-1680931 (orient:+) max_ev_support = 1 # retained_exon 1680688-1680761 (orient:+) max_ev_support = 3 scaffold_21 + retained_exons 1680688-1680761 asmbl_28374,asmbl_28375 scaffold_21 + intron_skips_exon 1679907-1680931 asmbl_28376 // Retained and Spliced Intron # retained_intron 2441436-2441601 (orient:+) max_ev_support = 2 # spliced_intron 2441436-2441601 (orient:+) max_ev_support = 1 scaffold_21 + intron 2441436-2441601 asmbl_28412 scaffold_21 + retained_intron 2441436-2441601 asmbl_28411 // Retained and Spliced Intron # retained_intron 2497047-2497201 (orient:+) max_ev_support = 3 # spliced_intron 2497047-2497201 (orient:+) max_ev_support = 2 scaffold_21 + intron 2497047-2497201 asmbl_28416,asmbl_28419 scaffold_21 + retained_intron 2497047-2497201 asmbl_28417,asmbl_28418 // Retained and Spliced Intron # retained_intron 2516716-2516804 (orient:+) max_ev_support = 2 # spliced_intron 2516716-2516804 (orient:+) max_ev_support = 2 scaffold_21 + intron 2516716-2516804 asmbl_28420,asmbl_28422 scaffold_21 + retained_intron 2516716-2516804 asmbl_28421 // Retained and Spliced Intron # retained_intron 2614872-2614971 (orient:+) max_ev_support = 1 # spliced_intron 2614872-2614971 (orient:+) max_ev_support = 2 scaffold_21 + intron 2614872-2614971 asmbl_28432 scaffold_21 + retained_intron 2614872-2614971 asmbl_28433 // Exon Skipping and Retention # skipped_exon 2950671-2951902 (orient:+) max_ev_support = 2 # retained_exon 2951596-2951683 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 2951596-2951683 asmbl_28449 scaffold_21 + intron_skips_exon 2950671-2951902 asmbl_28450,asmbl_28451 // Exon Skipping and Retention # skipped_exon 2952933-2953416 (orient:+) max_ev_support = 2 # retained_exon 2953085-2953148 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 2953085-2953148 asmbl_28451 scaffold_21 + intron_skips_exon 2952933-2953416 asmbl_28450 // Retained and Spliced Intron # retained_intron 3015237-3015391 (orient:+) max_ev_support = 1 # spliced_intron 3015237-3015391 (orient:+) max_ev_support = 2 scaffold_21 + intron 3015237-3015391 asmbl_28455 scaffold_21 + retained_intron 3015237-3015391 asmbl_28457 // Retained and Spliced Intron # retained_intron 3015285-3015391 (orient:+) max_ev_support = 1 # spliced_intron 3015285-3015391 (orient:+) max_ev_support = 2 scaffold_21 + intron 3015285-3015391 asmbl_28456,asmbl_28458,asmbl_28459 scaffold_21 + retained_intron 3015285-3015391 asmbl_28457 // Retained and Spliced Intron # retained_intron 3120017-3120306 (orient:+) max_ev_support = 5 # spliced_intron 3120017-3120306 (orient:+) max_ev_support = 1 scaffold_21 + intron 3120017-3120306 asmbl_28470 scaffold_21 + retained_intron 3120017-3120306 asmbl_28467,asmbl_28468,asmbl_28469 // Exon Skipping and Retention # skipped_exon 3169154-3170344 (orient:+) max_ev_support = 1 # retained_exon 3169685-3169834 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 3169685-3169834 asmbl_28479,asmbl_28481,asmbl_28482,asmbl_28483,asmbl_28484,asmbl_28492 scaffold_21 + intron_skips_exon 3169154-3170344 asmbl_28491,asmbl_28493 // Exon Skipping and Retention # skipped_exon 3162883-3165288 (orient:+) max_ev_support = 2 # retained_exon 3163840-3164007 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 3163840-3164007 asmbl_28482,asmbl_28484,asmbl_28491 scaffold_21 + intron_skips_exon 3162883-3165288 asmbl_28479,asmbl_28481,asmbl_28483,asmbl_28487,asmbl_28492,asmbl_28493,asmbl_28494 // Retained and Spliced Intron # retained_intron 3174719-3174850 (orient:+) max_ev_support = 1 # spliced_intron 3174719-3174850 (orient:+) max_ev_support = 2 scaffold_21 + intron 3174719-3174850 asmbl_28479,asmbl_28480,asmbl_28481,asmbl_28482,asmbl_28489 scaffold_21 + retained_intron 3174719-3174850 asmbl_28490 // Retained and Spliced Intron # retained_intron 3175043-3175199 (orient:+) max_ev_support = 1 # spliced_intron 3175043-3175199 (orient:+) max_ev_support = 2 scaffold_21 + intron 3175043-3175199 asmbl_28479,asmbl_28480,asmbl_28481,asmbl_28482,asmbl_28489 scaffold_21 + retained_intron 3175043-3175199 asmbl_28490 // Retained and Spliced Intron # retained_intron 3189776-3190483 (orient:+) max_ev_support = 1 # spliced_intron 3189776-3190483 (orient:+) max_ev_support = 1 scaffold_21 + intron 3189776-3190483 asmbl_28498,asmbl_28499 scaffold_21 + retained_intron 3189776-3190483 asmbl_28497 // Retained and Spliced Intron # retained_intron 3192371-3192392 (orient:+) max_ev_support = 1 # spliced_intron 3192371-3192392 (orient:+) max_ev_support = 1 scaffold_21 + intron 3192371-3192392 asmbl_28499 scaffold_21 + retained_intron 3192371-3192392 asmbl_28497,asmbl_28498,asmbl_28500 // Exon Skipping and Retention # skipped_exon 4099856-4102411 (orient:+) max_ev_support = 1 # retained_exon 4100643-4100663 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 4100643-4100663 asmbl_28521 scaffold_21 + intron_skips_exon 4099856-4102411 asmbl_28522 // Retained and Spliced Intron # retained_intron 4099856-4100642 (orient:+) max_ev_support = 2 # spliced_intron 4099856-4100642 (orient:+) max_ev_support = 1 scaffold_21 + intron 4099856-4100642 asmbl_28521 scaffold_21 + retained_intron 4099856-4100642 asmbl_28525 // Retained and Spliced Intron # retained_intron 4944460-4944587 (orient:+) max_ev_support = 1 # spliced_intron 4944460-4944587 (orient:+) max_ev_support = 2 scaffold_21 + intron 4944460-4944587 asmbl_28557 scaffold_21 + retained_intron 4944460-4944587 asmbl_28560 // Retained and Spliced Intron # retained_intron 4948171-4948378 (orient:+) max_ev_support = 2 # spliced_intron 4948171-4948378 (orient:+) max_ev_support = 2 scaffold_21 + intron 4948171-4948378 asmbl_28561 scaffold_21 + retained_intron 4948171-4948378 asmbl_28562 // Retained and Spliced Intron # retained_intron 5183291-5183495 (orient:+) max_ev_support = 2 # spliced_intron 5183291-5183495 (orient:+) max_ev_support = 3 scaffold_21 + intron 5183291-5183495 asmbl_28575 scaffold_21 + retained_intron 5183291-5183495 asmbl_28576 // Retained and Spliced Intron # retained_intron 5454653-5455337 (orient:+) max_ev_support = 2 # spliced_intron 5454653-5455337 (orient:+) max_ev_support = 3 scaffold_21 + intron 5454653-5455337 asmbl_28585,asmbl_28590 scaffold_21 + retained_intron 5454653-5455337 asmbl_28588 // Retained and Spliced Intron # retained_intron 5528725-5528797 (orient:+) max_ev_support = 1 # spliced_intron 5528725-5528797 (orient:+) max_ev_support = 2 scaffold_21 + intron 5528725-5528797 asmbl_28592,asmbl_28594 scaffold_21 + retained_intron 5528725-5528797 asmbl_28593 // Retained and Spliced Intron # retained_intron 5549480-5549620 (orient:+) max_ev_support = 2 # spliced_intron 5549480-5549620 (orient:+) max_ev_support = 2 scaffold_21 + intron 5549480-5549620 asmbl_28595,asmbl_28596,asmbl_28598 scaffold_21 + retained_intron 5549480-5549620 asmbl_28597 // Retained and Spliced Intron # retained_intron 6118192-6118268 (orient:+) max_ev_support = 2 # spliced_intron 6118192-6118268 (orient:+) max_ev_support = 2 scaffold_21 + intron 6118192-6118268 asmbl_28633 scaffold_21 + retained_intron 6118192-6118268 asmbl_28634 // Retained and Spliced Intron # retained_intron 6129614-6129688 (orient:+) max_ev_support = 2 # spliced_intron 6129614-6129688 (orient:+) max_ev_support = 2 scaffold_21 + intron 6129614-6129688 asmbl_28637,asmbl_28638 scaffold_21 + retained_intron 6129614-6129688 asmbl_28636 // Retained and Spliced Intron # retained_intron 6190737-6191794 (orient:+) max_ev_support = 2 # spliced_intron 6190737-6191794 (orient:+) max_ev_support = 2 scaffold_21 + intron 6190737-6191794 asmbl_28640 scaffold_21 + retained_intron 6190737-6191794 asmbl_28639,asmbl_28641 // Retained and Spliced Intron # retained_intron 6191859-6192384 (orient:+) max_ev_support = 2 # spliced_intron 6191859-6192384 (orient:+) max_ev_support = 2 scaffold_21 + intron 6191859-6192384 asmbl_28640,asmbl_28641 scaffold_21 + retained_intron 6191859-6192384 asmbl_28639 // Exon Skipping and Retention # skipped_exon 6391077-6393407 (orient:+) max_ev_support = 2 # retained_exon 6392213-6392242 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 6392213-6392242 asmbl_28654,asmbl_28655 scaffold_21 + intron_skips_exon 6391077-6393407 asmbl_28651 // Retained and Spliced Intron # retained_intron 6448011-6448185 (orient:+) max_ev_support = 2 # spliced_intron 6448011-6448185 (orient:+) max_ev_support = 3 scaffold_21 + intron 6448011-6448185 asmbl_28664 scaffold_21 + retained_intron 6448011-6448185 asmbl_28665 // Retained and Spliced Intron # retained_intron 6479488-6479867 (orient:+) max_ev_support = 3 # spliced_intron 6479488-6479867 (orient:+) max_ev_support = 1 scaffold_21 + intron 6479488-6479867 asmbl_28668 scaffold_21 + retained_intron 6479488-6479867 asmbl_28667 // Retained and Spliced Intron # retained_intron 6490693-6490848 (orient:+) max_ev_support = 2 # spliced_intron 6490693-6490848 (orient:+) max_ev_support = 2 scaffold_21 + intron 6490693-6490848 asmbl_28670,asmbl_28671,asmbl_28673 scaffold_21 + retained_intron 6490693-6490848 asmbl_28672 // Exon Skipping and Retention # skipped_exon 6512144-6512971 (orient:+) max_ev_support = 1 # retained_exon 6512237-6512322 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 6512237-6512322 asmbl_28678 scaffold_21 + intron_skips_exon 6512144-6512971 asmbl_28680 // Retained and Spliced Intron # retained_intron 6617614-6617692 (orient:+) max_ev_support = 1 # spliced_intron 6617614-6617692 (orient:+) max_ev_support = 2 scaffold_21 + intron 6617614-6617692 asmbl_28691,asmbl_28693,asmbl_28694 scaffold_21 + retained_intron 6617614-6617692 asmbl_28692 // Retained and Spliced Intron # retained_intron 6617873-6617964 (orient:+) max_ev_support = 1 # spliced_intron 6617873-6617964 (orient:+) max_ev_support = 2 scaffold_21 + intron 6617873-6617964 asmbl_28691,asmbl_28693,asmbl_28694 scaffold_21 + retained_intron 6617873-6617964 asmbl_28692 // Retained and Spliced Intron # retained_intron 6618853-6618996 (orient:+) max_ev_support = 1 # spliced_intron 6618853-6618996 (orient:+) max_ev_support = 2 scaffold_21 + intron 6618853-6618996 asmbl_28691,asmbl_28692,asmbl_28694 scaffold_21 + retained_intron 6618853-6618996 asmbl_28693 // Retained and Spliced Intron # retained_intron 6616948-6617116 (orient:+) max_ev_support = 1 # spliced_intron 6616948-6617116 (orient:+) max_ev_support = 2 scaffold_21 + intron 6616948-6617116 asmbl_28691,asmbl_28692,asmbl_28693 scaffold_21 + retained_intron 6616948-6617116 asmbl_28694 // Retained and Spliced Intron # retained_intron 6620794-6620944 (orient:+) max_ev_support = 2 # spliced_intron 6620794-6620944 (orient:+) max_ev_support = 1 scaffold_21 + intron 6620794-6620944 asmbl_28698 scaffold_21 + retained_intron 6620794-6620944 asmbl_28696,asmbl_28697 // Exon Skipping and Retention # skipped_exon 6637284-6639368 (orient:+) max_ev_support = 1 # retained_exon 6638698-6638970 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 6638698-6638782,6638896-6638970 asmbl_28701 scaffold_21 + intron_skips_exon 6637284-6639368 asmbl_28702 // Retained and Spliced Intron # retained_intron 6817863-6818183 (orient:+) max_ev_support = 1 # spliced_intron 6817863-6818183 (orient:+) max_ev_support = 2 scaffold_21 + intron 6817863-6818183 asmbl_28718,asmbl_28721 scaffold_21 + retained_intron 6817863-6818183 asmbl_28719,asmbl_28720 // Retained and Spliced Intron # retained_intron 6818231-6818419 (orient:+) max_ev_support = 1 # spliced_intron 6818231-6818419 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818231-6818419 asmbl_28718,asmbl_28720,asmbl_28721,asmbl_28722 scaffold_21 + retained_intron 6818231-6818419 asmbl_28719 // Retained and Spliced Intron # retained_intron 6818461-6818654 (orient:+) max_ev_support = 1 # spliced_intron 6818461-6818654 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818461-6818654 asmbl_28718,asmbl_28722 scaffold_21 + retained_intron 6818461-6818654 asmbl_28719,asmbl_28720,asmbl_28721 // Retained and Spliced Intron # retained_intron 6818680-6818878 (orient:+) max_ev_support = 1 # spliced_intron 6818680-6818878 (orient:+) max_ev_support = 2 scaffold_21 + intron 6818680-6818878 asmbl_28718 scaffold_21 + retained_intron 6818680-6818878 asmbl_28719,asmbl_28720,asmbl_28721,asmbl_28722 // Exon Skipping and Retention # skipped_exon 7116647-7117325 (orient:+) max_ev_support = 1 # retained_exon 7117027-7117148 (orient:+) max_ev_support = 3 scaffold_21 + retained_exons 7117027-7117148 asmbl_28729 scaffold_21 + intron_skips_exon 7116647-7117325 asmbl_28730 // Retained and Spliced Intron # retained_intron 7600965-7601122 (orient:+) max_ev_support = 2 # spliced_intron 7600965-7601122 (orient:+) max_ev_support = 2 scaffold_21 + intron 7600965-7601122 asmbl_28769 scaffold_21 + retained_intron 7600965-7601122 asmbl_28770 // Retained and Spliced Intron # retained_intron 7600965-7601224 (orient:+) max_ev_support = 2 # spliced_intron 7600965-7601224 (orient:+) max_ev_support = 2 scaffold_21 + intron 7600965-7601224 asmbl_28768 scaffold_21 + retained_intron 7600965-7601224 asmbl_28770 // Exon Skipping and Retention # skipped_exon 7725997-7727810 (orient:+) max_ev_support = 1 # retained_exon 7727561-7727721 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 7727561-7727721 asmbl_28779 scaffold_21 + intron_skips_exon 7725997-7727810 asmbl_28780 // Exon Skipping and Retention # skipped_exon 7724644-7727560 (orient:+) max_ev_support = 2 # retained_exon 7725836-7725996 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 7725836-7725996 asmbl_28780 scaffold_21 + intron_skips_exon 7724644-7727560 asmbl_28779 // Retained and Spliced Intron # retained_intron 7928625-7928725 (orient:+) max_ev_support = 1 # spliced_intron 7928625-7928725 (orient:+) max_ev_support = 2 scaffold_21 + intron 7928625-7928725 asmbl_28787 scaffold_21 + retained_intron 7928625-7928725 asmbl_28788 // Retained and Spliced Intron # retained_intron 8004779-8005332 (orient:+) max_ev_support = 2 # spliced_intron 8004779-8005332 (orient:+) max_ev_support = 2 scaffold_21 + intron 8004779-8005332 asmbl_28791 scaffold_21 + retained_intron 8004779-8005332 asmbl_28790,asmbl_28792 // Retained and Spliced Intron # retained_intron 8008219-8008373 (orient:+) max_ev_support = 2 # spliced_intron 8008219-8008373 (orient:+) max_ev_support = 2 scaffold_21 + intron 8008219-8008373 asmbl_28790,asmbl_28791,asmbl_28794,asmbl_28795,asmbl_28796 scaffold_21 + retained_intron 8008219-8008373 asmbl_28793 // Exon Skipping and Retention # skipped_exon 8278443-8278631 (orient:+) max_ev_support = 1 # retained_exon 8278464-8278505 (orient:+) max_ev_support = 1 scaffold_21 + retained_exons 8278464-8278505 asmbl_28819 scaffold_21 + intron_skips_exon 8278443-8278631 asmbl_28818 // Retained and Spliced Intron # retained_intron 8278506-8278610 (orient:+) max_ev_support = 1 # spliced_intron 8278506-8278610 (orient:+) max_ev_support = 1 scaffold_21 + intron 8278506-8278610 asmbl_28819,asmbl_28821 scaffold_21 + retained_intron 8278506-8278610 asmbl_28822 // Retained and Spliced Intron # retained_intron 8278548-8278631 (orient:+) max_ev_support = 1 # spliced_intron 8278548-8278631 (orient:+) max_ev_support = 1 scaffold_21 + intron 8278548-8278631 asmbl_28820 scaffold_21 + retained_intron 8278548-8278631 asmbl_28822 // Retained and Spliced Intron # retained_intron 8529725-8529850 (orient:+) max_ev_support = 1 # spliced_intron 8529725-8529850 (orient:+) max_ev_support = 3 scaffold_21 + intron 8529725-8529850 asmbl_28828,asmbl_28832 scaffold_21 + retained_intron 8529725-8529850 asmbl_28830 // Retained and Spliced Intron # retained_intron 8529229-8529354 (orient:+) max_ev_support = 1 # spliced_intron 8529229-8529354 (orient:+) max_ev_support = 3 scaffold_21 + intron 8529229-8529354 asmbl_28828,asmbl_28830 scaffold_21 + retained_intron 8529229-8529354 asmbl_28832 // Retained and Spliced Intron # retained_intron 8920825-8921417 (orient:+) max_ev_support = 2 # spliced_intron 8920825-8921417 (orient:+) max_ev_support = 1 scaffold_21 + intron 8920825-8921417 asmbl_28849 scaffold_21 + retained_intron 8920825-8921417 asmbl_28847,asmbl_28848 // Retained and Spliced Intron # retained_intron 9780293-9781249 (orient:+) max_ev_support = 3 # spliced_intron 9780293-9781249 (orient:+) max_ev_support = 1 scaffold_21 + intron 9780293-9781249 asmbl_28856 scaffold_21 + retained_intron 9780293-9781249 asmbl_28855 // Exon Skipping and Retention # skipped_exon 9840273-9840911 (orient:+) max_ev_support = 1 # retained_exon 9840618-9840825 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 9840618-9840825 asmbl_28858 scaffold_21 + intron_skips_exon 9840273-9840911 asmbl_28859 // Retained and Spliced Intron # retained_intron 10097905-10097938 (orient:+) max_ev_support = 1 # spliced_intron 10097905-10097938 (orient:+) max_ev_support = 1 scaffold_21 + intron 10097905-10097938 asmbl_28867 scaffold_21 + retained_intron 10097905-10097938 asmbl_28866,asmbl_28868 // Retained and Spliced Intron # retained_intron 10098326-10098427 (orient:+) max_ev_support = 1 # spliced_intron 10098326-10098427 (orient:+) max_ev_support = 1 scaffold_21 + intron 10098326-10098427 asmbl_28868 scaffold_21 + retained_intron 10098326-10098427 asmbl_28866,asmbl_28867 // Retained and Spliced Intron # retained_intron 10120864-10120890 (orient:+) max_ev_support = 3 # spliced_intron 10120864-10120890 (orient:+) max_ev_support = 1 scaffold_21 + intron 10120864-10120890 asmbl_28874 scaffold_21 + retained_intron 10120864-10120890 asmbl_28869 // Retained and Spliced Intron # retained_intron 10469247-10469271 (orient:+) max_ev_support = 1 # spliced_intron 10469247-10469271 (orient:+) max_ev_support = 1 scaffold_21 + intron 10469247-10469271 asmbl_28883 scaffold_21 + retained_intron 10469247-10469271 asmbl_28882 // Retained and Spliced Intron # retained_intron 10987237-10987279 (orient:+) max_ev_support = 1 # spliced_intron 10987237-10987279 (orient:+) max_ev_support = 2 scaffold_21 + intron 10987237-10987279 asmbl_28917 scaffold_21 + retained_intron 10987237-10987279 asmbl_28918,asmbl_28919 // Retained and Spliced Intron # retained_intron 10990182-10990263 (orient:+) max_ev_support = 2 # spliced_intron 10990182-10990263 (orient:+) max_ev_support = 1 scaffold_21 + intron 10990182-10990263 asmbl_28921 scaffold_21 + retained_intron 10990182-10990263 asmbl_28920 // Retained and Spliced Intron # retained_intron 11303261-11303360 (orient:+) max_ev_support = 1 # spliced_intron 11303261-11303360 (orient:+) max_ev_support = 1 scaffold_21 + intron 11303261-11303360 asmbl_28928 scaffold_21 + retained_intron 11303261-11303360 asmbl_28927 // Exon Skipping and Retention # skipped_exon 11312862-11315663 (orient:+) max_ev_support = 1 # retained_exon 11315508-11315579 (orient:+) max_ev_support = 2 scaffold_21 + retained_exons 11315508-11315579 asmbl_28930 scaffold_21 + intron_skips_exon 11312862-11315663 asmbl_28931 // Retained and Spliced Intron # retained_intron 839-882 (orient:-) max_ev_support = 1 # spliced_intron 839-882 (orient:-) max_ev_support = 1 scaffold_2174 - intron 839-882 asmbl_29074 scaffold_2174 - retained_intron 839-882 asmbl_29073 // Retained and Spliced Intron # retained_intron 1221-1252 (orient:-) max_ev_support = 1 # spliced_intron 1221-1252 (orient:-) max_ev_support = 1 scaffold_2174 - intron 1221-1252 asmbl_29073 scaffold_2174 - retained_intron 1221-1252 asmbl_29074 // Retained and Spliced Intron # retained_intron 26600-26679 (orient:+) max_ev_support = 3 # spliced_intron 26600-26679 (orient:+) max_ev_support = 3 scaffold_22 + intron 26600-26679 asmbl_29091,asmbl_29093 scaffold_22 + retained_intron 26600-26679 asmbl_29092 // Retained and Spliced Intron # retained_intron 31144-31291 (orient:+) max_ev_support = 2 # spliced_intron 31144-31291 (orient:+) max_ev_support = 2 scaffold_22 + intron 31144-31291 asmbl_29096 scaffold_22 + retained_intron 31144-31291 asmbl_29095 // Retained and Spliced Intron # retained_intron 210328-210515 (orient:+) max_ev_support = 3 # spliced_intron 210328-210515 (orient:+) max_ev_support = 2 scaffold_22 + intron 210328-210515 asmbl_29117 scaffold_22 + retained_intron 210328-210515 asmbl_29112,asmbl_29113,asmbl_29114,asmbl_29115,asmbl_29116 // Retained and Spliced Intron # retained_intron 214606-214723 (orient:+) max_ev_support = 3 # spliced_intron 214606-214723 (orient:+) max_ev_support = 2 scaffold_22 + intron 214606-214723 asmbl_29113,asmbl_29115,asmbl_29116,asmbl_29117 scaffold_22 + retained_intron 214606-214723 asmbl_29112,asmbl_29114 // Exon Skipping and Retention # skipped_exon 214832-216306 (orient:+) max_ev_support = 1 # retained_exon 215206-215343 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 215206-215343 asmbl_29112,asmbl_29115,asmbl_29117 scaffold_22 + intron_skips_exon 214832-216306 asmbl_29113 // Retained and Spliced Intron # retained_intron 214832-215205 (orient:+) max_ev_support = 3 # spliced_intron 214832-215205 (orient:+) max_ev_support = 2 scaffold_22 + intron 214832-215205 asmbl_29112,asmbl_29115,asmbl_29116,asmbl_29117 scaffold_22 + retained_intron 214832-215205 asmbl_29114 // Retained and Spliced Intron # retained_intron 214832-216306 (orient:+) max_ev_support = 3 # spliced_intron 214832-216306 (orient:+) max_ev_support = 1 scaffold_22 + intron 214832-216306 asmbl_29113 scaffold_22 + retained_intron 214832-216306 asmbl_29114 // Retained and Spliced Intron # retained_intron 215344-216306 (orient:+) max_ev_support = 3 # spliced_intron 215344-216306 (orient:+) max_ev_support = 2 scaffold_22 + intron 215344-216306 asmbl_29112,asmbl_29115,asmbl_29117 scaffold_22 + retained_intron 215344-216306 asmbl_29114,asmbl_29116 // Retained and Spliced Intron # retained_intron 237472-237591 (orient:+) max_ev_support = 1 # spliced_intron 237472-237591 (orient:+) max_ev_support = 2 scaffold_22 + intron 237472-237591 asmbl_29119 scaffold_22 + retained_intron 237472-237591 asmbl_29120 // Exon Skipping and Retention # skipped_exon 322655-323437 (orient:+) max_ev_support = 2 # retained_exon 323133-323189 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 323133-323189 asmbl_29133,asmbl_29137 scaffold_22 + intron_skips_exon 322655-323437 asmbl_29132,asmbl_29136 // Retained and Spliced Intron # retained_intron 322655-323132 (orient:+) max_ev_support = 1 # spliced_intron 322655-323132 (orient:+) max_ev_support = 1 scaffold_22 + intron 322655-323132 asmbl_29133,asmbl_29137 scaffold_22 + retained_intron 322655-323132 asmbl_29134,asmbl_29138 // Retained and Spliced Intron # retained_intron 322655-323437 (orient:+) max_ev_support = 1 # spliced_intron 322655-323437 (orient:+) max_ev_support = 2 scaffold_22 + intron 322655-323437 asmbl_29132,asmbl_29136 scaffold_22 + retained_intron 322655-323437 asmbl_29134 // Retained and Spliced Intron # retained_intron 323190-323437 (orient:+) max_ev_support = 1 # spliced_intron 323190-323437 (orient:+) max_ev_support = 1 scaffold_22 + intron 323190-323437 asmbl_29133,asmbl_29137 scaffold_22 + retained_intron 323190-323437 asmbl_29134 // Retained and Spliced Intron # retained_intron 326720-327593 (orient:+) max_ev_support = 2 # spliced_intron 326720-327593 (orient:+) max_ev_support = 3 scaffold_22 + intron 326720-327593 asmbl_29140 scaffold_22 + retained_intron 326720-327593 asmbl_29141 // Retained and Spliced Intron # retained_intron 483798-484218 (orient:+) max_ev_support = 3 # spliced_intron 483798-484218 (orient:+) max_ev_support = 1 scaffold_22 + intron 483798-484218 asmbl_29149 scaffold_22 + retained_intron 483798-484218 asmbl_29148 // Exon Skipping and Retention # skipped_exon 483798-485440 (orient:+) max_ev_support = 1 # retained_exon 484219-485088 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 484219-485088 asmbl_29149 scaffold_22 + intron_skips_exon 483798-485440 asmbl_29150 // Retained and Spliced Intron # retained_intron 484303-485440 (orient:+) max_ev_support = 1 # spliced_intron 484303-485440 (orient:+) max_ev_support = 3 scaffold_22 + intron 484303-485440 asmbl_29148 scaffold_22 + retained_intron 484303-485440 asmbl_29151 // Retained and Spliced Intron # retained_intron 485089-485440 (orient:+) max_ev_support = 1 # spliced_intron 485089-485440 (orient:+) max_ev_support = 2 scaffold_22 + intron 485089-485440 asmbl_29149 scaffold_22 + retained_intron 485089-485440 asmbl_29151 // Retained and Spliced Intron # retained_intron 485520-485567 (orient:+) max_ev_support = 1 # spliced_intron 485520-485567 (orient:+) max_ev_support = 1 scaffold_22 + intron 485520-485567 asmbl_29150 scaffold_22 + retained_intron 485520-485567 asmbl_29151 // Retained and Spliced Intron # retained_intron 485520-485599 (orient:+) max_ev_support = 1 # spliced_intron 485520-485599 (orient:+) max_ev_support = 3 scaffold_22 + intron 485520-485599 asmbl_29148,asmbl_29149 scaffold_22 + retained_intron 485520-485599 asmbl_29151 // Retained and Spliced Intron # retained_intron 497867-498066 (orient:+) max_ev_support = 2 # spliced_intron 497867-498066 (orient:+) max_ev_support = 1 scaffold_22 + intron 497867-498066 asmbl_29155 scaffold_22 + retained_intron 497867-498066 asmbl_29154 // Retained and Spliced Intron # retained_intron 497867-498164 (orient:+) max_ev_support = 2 # spliced_intron 497867-498164 (orient:+) max_ev_support = 2 scaffold_22 + intron 497867-498164 asmbl_29153 scaffold_22 + retained_intron 497867-498164 asmbl_29154 // Retained and Spliced Intron # retained_intron 594271-594371 (orient:+) max_ev_support = 2 # spliced_intron 594271-594371 (orient:+) max_ev_support = 3 scaffold_22 + intron 594271-594371 asmbl_29162,asmbl_29164 scaffold_22 + retained_intron 594271-594371 asmbl_29163 // Retained and Spliced Intron # retained_intron 647867-648211 (orient:+) max_ev_support = 3 # spliced_intron 647867-648211 (orient:+) max_ev_support = 3 scaffold_22 + intron 647867-648211 asmbl_29170 scaffold_22 + retained_intron 647867-648211 asmbl_29171 // Exon Skipping and Retention # skipped_exon 685999-686536 (orient:+) max_ev_support = 3 # retained_exon 686343-686402 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 686343-686402 asmbl_29173,asmbl_29174 scaffold_22 + intron_skips_exon 685999-686536 asmbl_29172 // Exon Skipping and Retention # skipped_exon 685158-685914 (orient:+) max_ev_support = 2 # retained_exon 685622-685673 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 685622-685673 asmbl_29174 scaffold_22 + intron_skips_exon 685158-685914 asmbl_29173 // Exon Skipping and Retention # skipped_exon 690259-693133 (orient:+) max_ev_support = 1 # retained_exon 691600-691681 (orient:+) max_ev_support = 4 scaffold_22 + retained_exons 691600-691681 asmbl_29176,asmbl_29177 scaffold_22 + intron_skips_exon 690259-693133 asmbl_29178 // Retained and Spliced Intron # retained_intron 752536-752836 (orient:+) max_ev_support = 2 # spliced_intron 752536-752836 (orient:+) max_ev_support = 3 scaffold_22 + intron 752536-752836 asmbl_29183 scaffold_22 + retained_intron 752536-752836 asmbl_29184 // Retained and Spliced Intron # retained_intron 900648-900742 (orient:+) max_ev_support = 2 # spliced_intron 900648-900742 (orient:+) max_ev_support = 2 scaffold_22 + intron 900648-900742 asmbl_29193 scaffold_22 + retained_intron 900648-900742 asmbl_29192 // Retained and Spliced Intron # retained_intron 958386-958490 (orient:+) max_ev_support = 2 # spliced_intron 958386-958490 (orient:+) max_ev_support = 3 scaffold_22 + intron 958386-958490 asmbl_29200 scaffold_22 + retained_intron 958386-958490 asmbl_29201 // Retained and Spliced Intron # retained_intron 1008363-1008659 (orient:+) max_ev_support = 1 # spliced_intron 1008363-1008659 (orient:+) max_ev_support = 2 scaffold_22 + intron 1008363-1008659 asmbl_29208,asmbl_29210,asmbl_29212 scaffold_22 + retained_intron 1008363-1008659 asmbl_29209,asmbl_29211 // Exon Skipping and Retention # skipped_exon 2387481-2389733 (orient:+) max_ev_support = 1 # retained_exon 2388115-2388156 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 2388115-2388156 asmbl_29232,asmbl_29235,asmbl_29236 scaffold_22 + intron_skips_exon 2387481-2389733 asmbl_29234 // Retained and Spliced Intron # retained_intron 4189098-4189298 (orient:+) max_ev_support = 1 # spliced_intron 4189098-4189298 (orient:+) max_ev_support = 2 scaffold_22 + intron 4189098-4189298 asmbl_29262 scaffold_22 + retained_intron 4189098-4189298 asmbl_29263,asmbl_29264 // Retained and Spliced Intron # retained_intron 4345965-4346077 (orient:+) max_ev_support = 2 # spliced_intron 4345965-4346077 (orient:+) max_ev_support = 2 scaffold_22 + intron 4345965-4346077 asmbl_29276 scaffold_22 + retained_intron 4345965-4346077 asmbl_29275 // Exon Skipping and Retention # skipped_exon 4355625-4356493 (orient:+) max_ev_support = 2 # retained_exon 4355993-4356031 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 4355993-4356031 asmbl_29278,asmbl_29281 scaffold_22 + intron_skips_exon 4355625-4356493 asmbl_29277 // Retained and Spliced Intron # retained_intron 4368173-4368545 (orient:+) max_ev_support = 3 # spliced_intron 4368173-4368545 (orient:+) max_ev_support = 2 scaffold_22 + intron 4368173-4368545 asmbl_29290 scaffold_22 + retained_intron 4368173-4368545 asmbl_29289 // Retained and Spliced Intron # retained_intron 4377962-4378747 (orient:+) max_ev_support = 3 # spliced_intron 4377962-4378747 (orient:+) max_ev_support = 3 scaffold_22 + intron 4377962-4378747 asmbl_29292 scaffold_22 + retained_intron 4377962-4378747 asmbl_29293 // Retained and Spliced Intron # retained_intron 5922960-5923153 (orient:+) max_ev_support = 2 # spliced_intron 5922960-5923153 (orient:+) max_ev_support = 3 scaffold_22 + intron 5922960-5923153 asmbl_29361 scaffold_22 + retained_intron 5922960-5923153 asmbl_29362,asmbl_29363 // Retained and Spliced Intron # retained_intron 5923249-5923359 (orient:+) max_ev_support = 2 # spliced_intron 5923249-5923359 (orient:+) max_ev_support = 3 scaffold_22 + intron 5923249-5923359 asmbl_29361 scaffold_22 + retained_intron 5923249-5923359 asmbl_29362,asmbl_29363 // Retained and Spliced Intron # retained_intron 5923485-5923610 (orient:+) max_ev_support = 2 # spliced_intron 5923485-5923610 (orient:+) max_ev_support = 3 scaffold_22 + intron 5923485-5923610 asmbl_29361,asmbl_29363 scaffold_22 + retained_intron 5923485-5923610 asmbl_29362 // Retained and Spliced Intron # retained_intron 6128541-6128687 (orient:+) max_ev_support = 3 # spliced_intron 6128541-6128687 (orient:+) max_ev_support = 1 scaffold_22 + intron 6128541-6128687 asmbl_29398 scaffold_22 + retained_intron 6128541-6128687 asmbl_29388 // Retained and Spliced Intron # retained_intron 6128912-6129087 (orient:+) max_ev_support = 1 # spliced_intron 6128912-6129087 (orient:+) max_ev_support = 1 scaffold_22 + intron 6128912-6129087 asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29398 scaffold_22 + retained_intron 6128912-6129087 asmbl_29388 // Retained and Spliced Intron # retained_intron 6130130-6130241 (orient:+) max_ev_support = 2 # spliced_intron 6130130-6130241 (orient:+) max_ev_support = 2 scaffold_22 + intron 6130130-6130241 asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29396 scaffold_22 + retained_intron 6130130-6130241 asmbl_29388,asmbl_29394 // Exon Skipping and Retention # skipped_exon 6130130-6131156 (orient:+) max_ev_support = 1 # retained_exon 6130242-6130438 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 6130242-6130438 asmbl_29389,asmbl_29391 scaffold_22 + intron_skips_exon 6130130-6131156 asmbl_29397,asmbl_29398 // Retained and Spliced Intron # retained_intron 6131276-6131391 (orient:+) max_ev_support = 1 # spliced_intron 6131276-6131391 (orient:+) max_ev_support = 2 scaffold_22 + intron 6131276-6131391 asmbl_29389,asmbl_29391,asmbl_29397,asmbl_29398 scaffold_22 + retained_intron 6131276-6131391 asmbl_29396 // Retained and Spliced Intron # retained_intron 6131523-6131689 (orient:+) max_ev_support = 1 # spliced_intron 6131523-6131689 (orient:+) max_ev_support = 2 scaffold_22 + intron 6131523-6131689 asmbl_29389,asmbl_29391,asmbl_29397 scaffold_22 + retained_intron 6131523-6131689 asmbl_29398 // Retained and Spliced Intron # retained_intron 6127007-6127298 (orient:+) max_ev_support = 1 # spliced_intron 6127007-6127298 (orient:+) max_ev_support = 2 scaffold_22 + intron 6127007-6127298 asmbl_29389,asmbl_29390,asmbl_29391,asmbl_29392 scaffold_22 + retained_intron 6127007-6127298 asmbl_29399 // Retained and Spliced Intron # retained_intron 6513438-6513461 (orient:+) max_ev_support = 3 # spliced_intron 6513438-6513461 (orient:+) max_ev_support = 1 scaffold_22 + intron 6513438-6513461 asmbl_29406 scaffold_22 + retained_intron 6513438-6513461 asmbl_29405 // Retained and Spliced Intron # retained_intron 6991765-6991914 (orient:+) max_ev_support = 4 # spliced_intron 6991765-6991914 (orient:+) max_ev_support = 1 scaffold_22 + intron 6991765-6991914 asmbl_29437 scaffold_22 + retained_intron 6991765-6991914 asmbl_29436 // Exon Skipping and Retention # skipped_exon 7120943-7123351 (orient:+) max_ev_support = 2 # retained_exon 7122703-7122873 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 7122703-7122873 asmbl_29447,asmbl_29451 scaffold_22 + intron_skips_exon 7120943-7123351 asmbl_29448,asmbl_29450 // Retained and Spliced Intron # retained_intron 7341577-7341665 (orient:+) max_ev_support = 1 # spliced_intron 7341577-7341665 (orient:+) max_ev_support = 2 scaffold_22 + intron 7341577-7341665 asmbl_29464 scaffold_22 + retained_intron 7341577-7341665 asmbl_29465 // Exon Skipping and Retention # skipped_exon 7691662-7693717 (orient:+) max_ev_support = 1 # retained_exon 7691782-7691840 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 7691782-7691840 asmbl_29502 scaffold_22 + intron_skips_exon 7691662-7693717 asmbl_29505 // Exon Skipping and Retention # skipped_exon 7691841-7693876 (orient:+) max_ev_support = 2 # retained_exon 7693718-7693776 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 7693718-7693776 asmbl_29505 scaffold_22 + intron_skips_exon 7691841-7693876 asmbl_29502 // Retained and Spliced Intron # retained_intron 7972285-7972608 (orient:+) max_ev_support = 3 # spliced_intron 7972285-7972608 (orient:+) max_ev_support = 1 scaffold_22 + intron 7972285-7972608 asmbl_29539 scaffold_22 + retained_intron 7972285-7972608 asmbl_29538 // Exon Skipping and Retention # skipped_exon 9243628-9245873 (orient:+) max_ev_support = 2 # retained_exon 9244217-9244318 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9244217-9244318 asmbl_29592 scaffold_22 + intron_skips_exon 9243628-9245873 asmbl_29593 // Exon Skipping and Retention # skipped_exon 9718380-9721163 (orient:+) max_ev_support = 1 # retained_exon 9720834-9720993 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993 asmbl_29599 scaffold_22 + intron_skips_exon 9718380-9721163 asmbl_29602 // Exon Skipping and Retention # skipped_exon 9718656-9721616 (orient:+) max_ev_support = 1 # retained_exon 9720834-9721268 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993,9721164-9721268 asmbl_29599 scaffold_22 + intron_skips_exon 9718656-9721616 asmbl_29601 // Exon Skipping and Retention # skipped_exon 9719199-9721961 (orient:+) max_ev_support = 1 # retained_exon 9720834-9721808 (orient:+) max_ev_support = 2 scaffold_22 + retained_exons 9720834-9720993,9721164-9721268,9721617-9721808 asmbl_29599 scaffold_22 + intron_skips_exon 9719199-9721961 asmbl_29600 // Exon Skipping and Retention # skipped_exon 9718010-9720833 (orient:+) max_ev_support = 2 # retained_exon 9718220-9719198 (orient:+) max_ev_support = 1 scaffold_22 + retained_exons 9718220-9718379,9718551-9718655,9719007-9719198 asmbl_29600 scaffold_22 + intron_skips_exon 9718010-9720833 asmbl_29599 // Retained and Spliced Intron # retained_intron 10004898-10005099 (orient:+) max_ev_support = 1 # spliced_intron 10004898-10005099 (orient:+) max_ev_support = 2 scaffold_22 + intron 10004898-10005099 asmbl_29627 scaffold_22 + retained_intron 10004898-10005099 asmbl_29626 // Retained and Spliced Intron # retained_intron 10005419-10005648 (orient:+) max_ev_support = 3 # spliced_intron 10005419-10005648 (orient:+) max_ev_support = 2 scaffold_22 + intron 10005419-10005648 asmbl_29627 scaffold_22 + retained_intron 10005419-10005648 asmbl_29626 // Retained and Spliced Intron # retained_intron 10089893-10089999 (orient:+) max_ev_support = 3 # spliced_intron 10089893-10089999 (orient:+) max_ev_support = 3 scaffold_22 + intron 10089893-10089999 asmbl_29634 scaffold_22 + retained_intron 10089893-10089999 asmbl_29635 // Retained and Spliced Intron # retained_intron 10300224-10300260 (orient:+) max_ev_support = 1 # spliced_intron 10300224-10300260 (orient:+) max_ev_support = 1 scaffold_22 + intron 10300224-10300260 asmbl_29640 scaffold_22 + retained_intron 10300224-10300260 asmbl_29639 // Retained and Spliced Intron # retained_intron 11402361-11402463 (orient:+) max_ev_support = 4 # spliced_intron 11402361-11402463 (orient:+) max_ev_support = 1 scaffold_22 + intron 11402361-11402463 asmbl_29667 scaffold_22 + retained_intron 11402361-11402463 asmbl_29666 // Retained and Spliced Intron # retained_intron 11473745-11473840 (orient:+) max_ev_support = 1 # spliced_intron 11473745-11473840 (orient:+) max_ev_support = 3 scaffold_22 + intron 11473745-11473840 asmbl_29676 scaffold_22 + retained_intron 11473745-11473840 asmbl_29679 // Retained and Spliced Intron # retained_intron 11543991-11544062 (orient:+) max_ev_support = 1 # spliced_intron 11543991-11544062 (orient:+) max_ev_support = 1 scaffold_22 + intron 11543991-11544062 asmbl_29697 scaffold_22 + retained_intron 11543991-11544062 asmbl_29696,asmbl_29698 // Retained and Spliced Intron # retained_intron 11544135-11544174 (orient:+) max_ev_support = 1 # spliced_intron 11544135-11544174 (orient:+) max_ev_support = 1 scaffold_22 + intron 11544135-11544174 asmbl_29696 scaffold_22 + retained_intron 11544135-11544174 asmbl_29697,asmbl_29698 // Retained and Spliced Intron # retained_intron 11544027-11544174 (orient:+) max_ev_support = 1 # spliced_intron 11544027-11544174 (orient:+) max_ev_support = 1 scaffold_22 + intron 11544027-11544174 asmbl_29695 scaffold_22 + retained_intron 11544027-11544174 asmbl_29698 // Retained and Spliced Intron # retained_intron 11731907-11731990 (orient:+) max_ev_support = 1 # spliced_intron 11731907-11731990 (orient:+) max_ev_support = 1 scaffold_22 + intron 11731907-11731990 asmbl_29713 scaffold_22 + retained_intron 11731907-11731990 asmbl_29712 // Retained and Spliced Intron # retained_intron 223722-223962 (orient:-) max_ev_support = 5 # spliced_intron 223722-223962 (orient:-) max_ev_support = 1 scaffold_22 - intron 223722-223962 asmbl_29842 scaffold_22 - retained_intron 223722-223962 asmbl_29836,asmbl_29837 // Retained and Spliced Intron # retained_intron 224379-224570 (orient:-) max_ev_support = 3 # spliced_intron 224379-224570 (orient:-) max_ev_support = 3 scaffold_22 - intron 224379-224570 asmbl_29837,asmbl_29838,asmbl_29842 scaffold_22 - retained_intron 224379-224570 asmbl_29836,asmbl_29839 // Retained and Spliced Intron # retained_intron 224610-224758 (orient:-) max_ev_support = 3 # spliced_intron 224610-224758 (orient:-) max_ev_support = 3 scaffold_22 - intron 224610-224758 asmbl_29837,asmbl_29838,asmbl_29842 scaffold_22 - retained_intron 224610-224758 asmbl_29836,asmbl_29839 // Retained and Spliced Intron # retained_intron 225300-225479 (orient:-) max_ev_support = 2 # spliced_intron 225300-225479 (orient:-) max_ev_support = 3 scaffold_22 - intron 225300-225479 asmbl_29836,asmbl_29837,asmbl_29838,asmbl_29839,asmbl_29842 scaffold_22 - retained_intron 225300-225479 asmbl_29840 // Retained and Spliced Intron # retained_intron 507350-507876 (orient:-) max_ev_support = 4 # spliced_intron 507350-507876 (orient:-) max_ev_support = 3 scaffold_22 - intron 507350-507876 asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29855,asmbl_29860,asmbl_29861,asmbl_29863,asmbl_29865,asmbl_29868 scaffold_22 - retained_intron 507350-507876 asmbl_29851 // Exon Skipping and Retention # skipped_exon 511408-512941 (orient:-) max_ev_support = 3 # retained_exon 512491-512561 (orient:-) max_ev_support = 3 scaffold_22 - retained_exons 512491-512561 asmbl_29853,asmbl_29865 scaffold_22 - intron_skips_exon 511408-512941 asmbl_29852,asmbl_29854,asmbl_29855,asmbl_29863,asmbl_29868 // Retained and Spliced Intron # retained_intron 506433-506518 (orient:-) max_ev_support = 2 # spliced_intron 506433-506518 (orient:-) max_ev_support = 3 scaffold_22 - intron 506433-506518 asmbl_29851,asmbl_29852,asmbl_29853,asmbl_29854,asmbl_29860,asmbl_29861,asmbl_29863,asmbl_29865,asmbl_29868 scaffold_22 - retained_intron 506433-506518 asmbl_29855 // Retained and Spliced Intron # retained_intron 504274-504463 (orient:-) max_ev_support = 1 # spliced_intron 504274-504463 (orient:-) max_ev_support = 2 scaffold_22 - intron 504274-504463 asmbl_29854,asmbl_29862,asmbl_29864,asmbl_29865,asmbl_29866 scaffold_22 - retained_intron 504274-504463 asmbl_29863,asmbl_29867 // Retained and Spliced Intron # retained_intron 504668-504905 (orient:-) max_ev_support = 1 # spliced_intron 504668-504905 (orient:-) max_ev_support = 2 scaffold_22 - intron 504668-504905 asmbl_29854,asmbl_29862,asmbl_29863,asmbl_29865,asmbl_29867 scaffold_22 - retained_intron 504668-504905 asmbl_29864,asmbl_29866 // Retained and Spliced Intron # retained_intron 736233-736408 (orient:-) max_ev_support = 2 # spliced_intron 736233-736408 (orient:-) max_ev_support = 2 scaffold_22 - intron 736233-736408 asmbl_29887 scaffold_22 - retained_intron 736233-736408 asmbl_29888 // Retained and Spliced Intron # retained_intron 744120-744573 (orient:-) max_ev_support = 1 # spliced_intron 744120-744573 (orient:-) max_ev_support = 1 scaffold_22 - intron 744120-744573 asmbl_29892 scaffold_22 - retained_intron 744120-744573 asmbl_29891 // Exon Skipping and Retention # skipped_exon 744120-745388 (orient:-) max_ev_support = 1 # retained_exon 744574-745101 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 744574-745101 asmbl_29892 scaffold_22 - intron_skips_exon 744120-745388 asmbl_29893 // Retained and Spliced Intron # retained_intron 1013399-1013787 (orient:-) max_ev_support = 2 # spliced_intron 1013399-1013787 (orient:-) max_ev_support = 2 scaffold_22 - intron 1013399-1013787 asmbl_29904 scaffold_22 - retained_intron 1013399-1013787 asmbl_29905 // Retained and Spliced Intron # retained_intron 1013479-1013787 (orient:-) max_ev_support = 2 # spliced_intron 1013479-1013787 (orient:-) max_ev_support = 2 scaffold_22 - intron 1013479-1013787 asmbl_29903 scaffold_22 - retained_intron 1013479-1013787 asmbl_29905 // Retained and Spliced Intron # retained_intron 1626257-1626515 (orient:-) max_ev_support = 2 # spliced_intron 1626257-1626515 (orient:-) max_ev_support = 2 scaffold_22 - intron 1626257-1626515 asmbl_29908 scaffold_22 - retained_intron 1626257-1626515 asmbl_29907 // Retained and Spliced Intron # retained_intron 1707174-1707269 (orient:-) max_ev_support = 3 # spliced_intron 1707174-1707269 (orient:-) max_ev_support = 3 scaffold_22 - intron 1707174-1707269 asmbl_29910 scaffold_22 - retained_intron 1707174-1707269 asmbl_29911 // Retained and Spliced Intron # retained_intron 1706545-1706810 (orient:-) max_ev_support = 1 # spliced_intron 1706545-1706810 (orient:-) max_ev_support = 3 scaffold_22 - intron 1706545-1706810 asmbl_29910,asmbl_29911 scaffold_22 - retained_intron 1706545-1706810 asmbl_29913 // Retained and Spliced Intron # retained_intron 3011801-3011845 (orient:-) max_ev_support = 2 # spliced_intron 3011801-3011845 (orient:-) max_ev_support = 1 scaffold_22 - intron 3011801-3011845 asmbl_29930 scaffold_22 - retained_intron 3011801-3011845 asmbl_29929 // Retained and Spliced Intron # retained_intron 3532808-3532917 (orient:-) max_ev_support = 1 # spliced_intron 3532808-3532917 (orient:-) max_ev_support = 1 scaffold_22 - intron 3532808-3532917 asmbl_29939 scaffold_22 - retained_intron 3532808-3532917 asmbl_29940 // Retained and Spliced Intron # retained_intron 3782822-3783053 (orient:-) max_ev_support = 1 # spliced_intron 3782822-3783053 (orient:-) max_ev_support = 1 scaffold_22 - intron 3782822-3783053 asmbl_29948 scaffold_22 - retained_intron 3782822-3783053 asmbl_29947 // Exon Skipping and Retention # skipped_exon 3790101-3790999 (orient:-) max_ev_support = 1 # retained_exon 3790472-3790504 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 3790472-3790504 asmbl_29950,asmbl_29953 scaffold_22 - intron_skips_exon 3790101-3790999 asmbl_29951,asmbl_29952 // Retained and Spliced Intron # retained_intron 4225894-4226332 (orient:-) max_ev_support = 1 # spliced_intron 4225894-4226332 (orient:-) max_ev_support = 1 scaffold_22 - intron 4225894-4226332 asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29990 scaffold_22 - retained_intron 4225894-4226332 asmbl_29977,asmbl_29986,asmbl_29988 // Exon Skipping and Retention # skipped_exon 4231499-4232451 (orient:-) max_ev_support = 1 # retained_exon 4231807-4232079 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 4231807-4232079 asmbl_29977,asmbl_29990 scaffold_22 - intron_skips_exon 4231499-4232451 asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986 // Exon Skipping and Retention # skipped_exon 4239153-4240805 (orient:-) max_ev_support = 2 # retained_exon 4239310-4240364 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4239310-4240364 asmbl_29977,asmbl_29978,asmbl_29985 scaffold_22 - intron_skips_exon 4239153-4240805 asmbl_29979,asmbl_29981 // Retained and Spliced Intron # retained_intron 4239535-4239758 (orient:-) max_ev_support = 2 # spliced_intron 4239535-4239758 (orient:-) max_ev_support = 1 scaffold_22 - intron 4239535-4239758 asmbl_29980,asmbl_29984 scaffold_22 - retained_intron 4239535-4239758 asmbl_29977,asmbl_29978,asmbl_29985 // Retained and Spliced Intron # retained_intron 4239789-4240805 (orient:-) max_ev_support = 1 # spliced_intron 4239789-4240805 (orient:-) max_ev_support = 1 scaffold_22 - intron 4239789-4240805 asmbl_29980 scaffold_22 - retained_intron 4239789-4240805 asmbl_29984 // Retained and Spliced Intron # retained_intron 4240365-4240805 (orient:-) max_ev_support = 1 # spliced_intron 4240365-4240805 (orient:-) max_ev_support = 2 scaffold_22 - intron 4240365-4240805 asmbl_29977,asmbl_29978,asmbl_29985 scaffold_22 - retained_intron 4240365-4240805 asmbl_29984 // Retained and Spliced Intron # retained_intron 4241052-4241193 (orient:-) max_ev_support = 1 # spliced_intron 4241052-4241193 (orient:-) max_ev_support = 2 scaffold_22 - intron 4241052-4241193 asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29981,asmbl_29984 scaffold_22 - retained_intron 4241052-4241193 asmbl_29985 // Retained and Spliced Intron # retained_intron 4221540-4221851 (orient:-) max_ev_support = 1 # spliced_intron 4221540-4221851 (orient:-) max_ev_support = 1 scaffold_22 - intron 4221540-4221851 asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29988,asmbl_29990 scaffold_22 - retained_intron 4221540-4221851 asmbl_29987 // Retained and Spliced Intron # retained_intron 4220495-4220866 (orient:-) max_ev_support = 1 # spliced_intron 4220495-4220866 (orient:-) max_ev_support = 1 scaffold_22 - intron 4220495-4220866 asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29990 scaffold_22 - retained_intron 4220495-4220866 asmbl_29988 // Retained and Spliced Intron # retained_intron 4223113-4223394 (orient:-) max_ev_support = 1 # spliced_intron 4223113-4223394 (orient:-) max_ev_support = 1 scaffold_22 - intron 4223113-4223394 asmbl_29977,asmbl_29978,asmbl_29979,asmbl_29980,asmbl_29986,asmbl_29990 scaffold_22 - retained_intron 4223113-4223394 asmbl_29988 // Retained and Spliced Intron # retained_intron 4231499-4231806 (orient:-) max_ev_support = 1 # spliced_intron 4231499-4231806 (orient:-) max_ev_support = 1 scaffold_22 - intron 4231499-4231806 asmbl_29977,asmbl_29990 scaffold_22 - retained_intron 4231499-4231806 asmbl_29988 // Retained and Spliced Intron # retained_intron 4278389-4278555 (orient:-) max_ev_support = 3 # spliced_intron 4278389-4278555 (orient:-) max_ev_support = 1 scaffold_22 - intron 4278389-4278555 asmbl_29999 scaffold_22 - retained_intron 4278389-4278555 asmbl_29998 // Retained and Spliced Intron # retained_intron 4287947-4288162 (orient:-) max_ev_support = 1 # spliced_intron 4287947-4288162 (orient:-) max_ev_support = 2 scaffold_22 - intron 4287947-4288162 asmbl_30000,asmbl_30003,asmbl_30007 scaffold_22 - retained_intron 4287947-4288162 asmbl_30001,asmbl_30008 // Exon Skipping and Retention # skipped_exon 4286224-4288162 (orient:-) max_ev_support = 1 # retained_exon 4287918-4287946 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4287918-4287946 asmbl_30003,asmbl_30007 scaffold_22 - intron_skips_exon 4286224-4288162 asmbl_30005 // Retained and Spliced Intron # retained_intron 4404848-4404976 (orient:-) max_ev_support = 2 # spliced_intron 4404848-4404976 (orient:-) max_ev_support = 1 scaffold_22 - intron 4404848-4404976 asmbl_30019 scaffold_22 - retained_intron 4404848-4404976 asmbl_30018 // Retained and Spliced Intron # retained_intron 4408885-4409056 (orient:-) max_ev_support = 2 # spliced_intron 4408885-4409056 (orient:-) max_ev_support = 2 scaffold_22 - intron 4408885-4409056 asmbl_30022 scaffold_22 - retained_intron 4408885-4409056 asmbl_30021 // Retained and Spliced Intron # retained_intron 4416451-4416579 (orient:-) max_ev_support = 1 # spliced_intron 4416451-4416579 (orient:-) max_ev_support = 2 scaffold_22 - intron 4416451-4416579 asmbl_30027 scaffold_22 - retained_intron 4416451-4416579 asmbl_30029 // Exon Skipping and Retention # skipped_exon 4433987-4435158 (orient:-) max_ev_support = 3 # retained_exon 4434690-4434788 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 4434690-4434788 asmbl_30031 scaffold_22 - intron_skips_exon 4433987-4435158 asmbl_30030 // Retained and Spliced Intron # retained_intron 4788211-4788482 (orient:-) max_ev_support = 2 # spliced_intron 4788211-4788482 (orient:-) max_ev_support = 2 scaffold_22 - intron 4788211-4788482 asmbl_30043 scaffold_22 - retained_intron 4788211-4788482 asmbl_30042 // Exon Skipping and Retention # skipped_exon 5984784-5985349 (orient:-) max_ev_support = 1 # retained_exon 5985018-5985087 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 5985018-5985087 asmbl_30067 scaffold_22 - intron_skips_exon 5984784-5985349 asmbl_30066 // Exon Skipping and Retention # skipped_exon 5981551-5983283 (orient:-) max_ev_support = 2 # retained_exon 5981805-5981878 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 5981805-5981878 asmbl_30068 scaffold_22 - intron_skips_exon 5981551-5983283 asmbl_30066,asmbl_30067 // Exon Skipping and Retention # skipped_exon 6104579-6107430 (orient:-) max_ev_support = 1 # retained_exon 6105170-6105220 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 6105170-6105220 asmbl_30073 scaffold_22 - intron_skips_exon 6104579-6107430 asmbl_30074 // Retained and Spliced Intron # retained_intron 6166014-6166161 (orient:-) max_ev_support = 2 # spliced_intron 6166014-6166161 (orient:-) max_ev_support = 2 scaffold_22 - intron 6166014-6166161 asmbl_30086 scaffold_22 - retained_intron 6166014-6166161 asmbl_30085 // Exon Skipping and Retention # skipped_exon 6217249-6218993 (orient:-) max_ev_support = 1 # retained_exon 6217741-6217849 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 6217741-6217849 asmbl_30092,asmbl_30094 scaffold_22 - intron_skips_exon 6217249-6218993 asmbl_30093 // Exon Skipping and Retention # skipped_exon 6902811-6903282 (orient:-) max_ev_support = 1 # retained_exon 6903172-6903212 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 6903172-6903212 asmbl_30111 scaffold_22 - intron_skips_exon 6902811-6903282 asmbl_30110 // Exon Skipping and Retention # skipped_exon 7248508-7249417 (orient:-) max_ev_support = 1 # retained_exon 7249211-7249237 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 7249211-7249237 asmbl_30151 scaffold_22 - intron_skips_exon 7248508-7249417 asmbl_30150 // Retained and Spliced Intron # retained_intron 7416523-7416632 (orient:-) max_ev_support = 2 # spliced_intron 7416523-7416632 (orient:-) max_ev_support = 1 scaffold_22 - intron 7416523-7416632 asmbl_30160 scaffold_22 - retained_intron 7416523-7416632 asmbl_30159,asmbl_30161 // Retained and Spliced Intron # retained_intron 7488327-7488420 (orient:-) max_ev_support = 3 # spliced_intron 7488327-7488420 (orient:-) max_ev_support = 2 scaffold_22 - intron 7488327-7488420 asmbl_30173 scaffold_22 - retained_intron 7488327-7488420 asmbl_30172 // Retained and Spliced Intron # retained_intron 7787082-7787160 (orient:-) max_ev_support = 2 # spliced_intron 7787082-7787160 (orient:-) max_ev_support = 2 scaffold_22 - intron 7787082-7787160 asmbl_30188 scaffold_22 - retained_intron 7787082-7787160 asmbl_30189 // Exon Skipping and Retention # skipped_exon 7802137-7803136 (orient:-) max_ev_support = 1 # retained_exon 7802612-7802713 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 7802612-7802713 asmbl_30191 scaffold_22 - intron_skips_exon 7802137-7803136 asmbl_30192 // Retained and Spliced Intron # retained_intron 7891905-7892011 (orient:-) max_ev_support = 2 # spliced_intron 7891905-7892011 (orient:-) max_ev_support = 1 scaffold_22 - intron 7891905-7892011 asmbl_30199,asmbl_30201 scaffold_22 - retained_intron 7891905-7892011 asmbl_30200 // Retained and Spliced Intron # retained_intron 7893263-7893360 (orient:-) max_ev_support = 2 # spliced_intron 7893263-7893360 (orient:-) max_ev_support = 1 scaffold_22 - intron 7893263-7893360 asmbl_30199 scaffold_22 - retained_intron 7893263-7893360 asmbl_30200,asmbl_30201 // Retained and Spliced Intron # retained_intron 7896054-7896156 (orient:-) max_ev_support = 1 # spliced_intron 7896054-7896156 (orient:-) max_ev_support = 2 scaffold_22 - intron 7896054-7896156 asmbl_30202,asmbl_30203 scaffold_22 - retained_intron 7896054-7896156 asmbl_30205 // Retained and Spliced Intron # retained_intron 7901370-7901566 (orient:-) max_ev_support = 3 # spliced_intron 7901370-7901566 (orient:-) max_ev_support = 3 scaffold_22 - intron 7901370-7901566 asmbl_30208 scaffold_22 - retained_intron 7901370-7901566 asmbl_30207,asmbl_30209 // Exon Skipping and Retention # skipped_exon 8236659-8237400 (orient:-) max_ev_support = 1 # retained_exon 8237055-8237190 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 8237055-8237190 asmbl_30232,asmbl_30233 scaffold_22 - intron_skips_exon 8236659-8237400 asmbl_30234 // Retained and Spliced Intron # retained_intron 8241615-8241803 (orient:-) max_ev_support = 2 # spliced_intron 8241615-8241803 (orient:-) max_ev_support = 1 scaffold_22 - intron 8241615-8241803 asmbl_30233 scaffold_22 - retained_intron 8241615-8241803 asmbl_30232,asmbl_30234 // Exon Skipping and Retention # skipped_exon 9157646-9159906 (orient:-) max_ev_support = 1 # retained_exon 9158489-9158564 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 9158489-9158564 asmbl_30282,asmbl_30285 scaffold_22 - intron_skips_exon 9157646-9159906 asmbl_30283,asmbl_30284 // Exon Skipping and Retention # skipped_exon 9157307-9158488 (orient:-) max_ev_support = 2 # retained_exon 9157570-9157645 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 9157570-9157645 asmbl_30283,asmbl_30284 scaffold_22 - intron_skips_exon 9157307-9158488 asmbl_30282,asmbl_30285 // Retained and Spliced Intron # retained_intron 9340082-9340165 (orient:-) max_ev_support = 2 # spliced_intron 9340082-9340165 (orient:-) max_ev_support = 1 scaffold_22 - intron 9340082-9340165 asmbl_30302 scaffold_22 - retained_intron 9340082-9340165 asmbl_30301 // Retained and Spliced Intron # retained_intron 9340091-9340165 (orient:-) max_ev_support = 2 # spliced_intron 9340091-9340165 (orient:-) max_ev_support = 1 scaffold_22 - intron 9340091-9340165 asmbl_30303 scaffold_22 - retained_intron 9340091-9340165 asmbl_30301 // Retained and Spliced Intron # retained_intron 9537969-9539952 (orient:-) max_ev_support = 6 # spliced_intron 9537969-9539952 (orient:-) max_ev_support = 1 scaffold_22 - intron 9537969-9539952 asmbl_30311,asmbl_30312 scaffold_22 - retained_intron 9537969-9539952 asmbl_30310 // Retained and Spliced Intron # retained_intron 9540632-9540817 (orient:-) max_ev_support = 1 # spliced_intron 9540632-9540817 (orient:-) max_ev_support = 1 scaffold_22 - intron 9540632-9540817 asmbl_30311 scaffold_22 - retained_intron 9540632-9540817 asmbl_30310,asmbl_30312 // Retained and Spliced Intron # retained_intron 9911206-9911454 (orient:-) max_ev_support = 2 # spliced_intron 9911206-9911454 (orient:-) max_ev_support = 2 scaffold_22 - intron 9911206-9911454 asmbl_30341 scaffold_22 - retained_intron 9911206-9911454 asmbl_30342 // Exon Skipping and Retention # skipped_exon 10044730-10045437 (orient:-) max_ev_support = 1 # retained_exon 10044842-10045098 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 10044842-10045098 asmbl_30348 scaffold_22 - intron_skips_exon 10044730-10045437 asmbl_30347 // Exon Skipping and Retention # skipped_exon 10237845-10238756 (orient:-) max_ev_support = 2 # retained_exon 10238117-10238146 (orient:-) max_ev_support = 2 scaffold_22 - retained_exons 10238117-10238146 asmbl_30357 scaffold_22 - intron_skips_exon 10237845-10238756 asmbl_30356,asmbl_30358 // Retained and Spliced Intron # retained_intron 10286469-10286546 (orient:-) max_ev_support = 2 # spliced_intron 10286469-10286546 (orient:-) max_ev_support = 1 scaffold_22 - intron 10286469-10286546 asmbl_30368 scaffold_22 - retained_intron 10286469-10286546 asmbl_30367 // Retained and Spliced Intron # retained_intron 10983933-10984017 (orient:-) max_ev_support = 3 # spliced_intron 10983933-10984017 (orient:-) max_ev_support = 5 scaffold_22 - intron 10983933-10984017 asmbl_30405,asmbl_30406,asmbl_30408,asmbl_30409 scaffold_22 - retained_intron 10983933-10984017 asmbl_30407 // Retained and Spliced Intron # retained_intron 11343600-11343820 (orient:-) max_ev_support = 2 # spliced_intron 11343600-11343820 (orient:-) max_ev_support = 2 scaffold_22 - intron 11343600-11343820 asmbl_30434 scaffold_22 - retained_intron 11343600-11343820 asmbl_30435 // Retained and Spliced Intron # retained_intron 11345296-11345475 (orient:-) max_ev_support = 1 # spliced_intron 11345296-11345475 (orient:-) max_ev_support = 1 scaffold_22 - intron 11345296-11345475 asmbl_30437 scaffold_22 - retained_intron 11345296-11345475 asmbl_30438 // Exon Skipping and Retention # skipped_exon 11476252-11476729 (orient:-) max_ev_support = 1 # retained_exon 11476356-11476485 (orient:-) max_ev_support = 1 scaffold_22 - retained_exons 11476356-11476485 asmbl_30450 scaffold_22 - intron_skips_exon 11476252-11476729 asmbl_30449 // Retained and Spliced Intron # retained_intron 1132-1315 (orient:-) max_ev_support = 5 # spliced_intron 1132-1315 (orient:-) max_ev_support = 1 scaffold_2208 - intron 1132-1315 asmbl_30560 scaffold_2208 - retained_intron 1132-1315 asmbl_30559 // Retained and Spliced Intron # retained_intron 774-866 (orient:+) max_ev_support = 1 # spliced_intron 774-866 (orient:+) max_ev_support = 1 scaffold_2237 + intron 774-866 asmbl_30569 scaffold_2237 + retained_intron 774-866 asmbl_30568 // Exon Skipping and Retention # skipped_exon 403-1245 (orient:-) max_ev_support = 1 # retained_exon 812-921 (orient:-) max_ev_support = 1 scaffold_2258 - retained_exons 812-921 asmbl_30575 scaffold_2258 - intron_skips_exon 403-1245 asmbl_30576 // Exon Skipping and Retention # skipped_exon 158-811 (orient:-) max_ev_support = 1 # retained_exon 293-402 (orient:-) max_ev_support = 1 scaffold_2258 - retained_exons 293-402 asmbl_30576 scaffold_2258 - intron_skips_exon 158-811 asmbl_30575 // Exon Skipping and Retention # skipped_exon 4088-5334 (orient:-) max_ev_support = 2 # retained_exon 5060-5089 (orient:-) max_ev_support = 2 scaffold_228 - retained_exons 5060-5089 asmbl_30580 scaffold_228 - intron_skips_exon 4088-5334 asmbl_30581 // Retained and Spliced Intron # retained_intron 222857-223034 (orient:+) max_ev_support = 2 # spliced_intron 222857-223034 (orient:+) max_ev_support = 2 scaffold_23 + intron 222857-223034 asmbl_30597 scaffold_23 + retained_intron 222857-223034 asmbl_30596 // Retained and Spliced Intron # retained_intron 1458422-1458455 (orient:+) max_ev_support = 2 # spliced_intron 1458422-1458455 (orient:+) max_ev_support = 1 scaffold_23 + intron 1458422-1458455 asmbl_30633 scaffold_23 + retained_intron 1458422-1458455 asmbl_30632 // Retained and Spliced Intron # retained_intron 1576504-1576610 (orient:+) max_ev_support = 2 # spliced_intron 1576504-1576610 (orient:+) max_ev_support = 2 scaffold_23 + intron 1576504-1576610 asmbl_30646 scaffold_23 + retained_intron 1576504-1576610 asmbl_30647 // Retained and Spliced Intron # retained_intron 1576741-1576856 (orient:+) max_ev_support = 2 # spliced_intron 1576741-1576856 (orient:+) max_ev_support = 2 scaffold_23 + intron 1576741-1576856 asmbl_30646 scaffold_23 + retained_intron 1576741-1576856 asmbl_30647 // Retained and Spliced Intron # retained_intron 1739076-1739233 (orient:+) max_ev_support = 1 # spliced_intron 1739076-1739233 (orient:+) max_ev_support = 1 scaffold_23 + intron 1739076-1739233 asmbl_30658,asmbl_30659 scaffold_23 + retained_intron 1739076-1739233 asmbl_30657 // Retained and Spliced Intron # retained_intron 1741287-1741399 (orient:+) max_ev_support = 1 # spliced_intron 1741287-1741399 (orient:+) max_ev_support = 1 scaffold_23 + intron 1741287-1741399 asmbl_30657,asmbl_30659 scaffold_23 + retained_intron 1741287-1741399 asmbl_30658 // Exon Skipping and Retention # skipped_exon 1850325-1851476 (orient:+) max_ev_support = 1 # retained_exon 1850702-1850809 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 1850702-1850809 asmbl_30665 scaffold_23 + intron_skips_exon 1850325-1851476 asmbl_30666 // Exon Skipping and Retention # skipped_exon 1850810-1852793 (orient:+) max_ev_support = 2 # retained_exon 1851477-1851584 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 1851477-1851584 asmbl_30666 scaffold_23 + intron_skips_exon 1850810-1852793 asmbl_30665 // Retained and Spliced Intron # retained_intron 1992483-1992563 (orient:+) max_ev_support = 1 # spliced_intron 1992483-1992563 (orient:+) max_ev_support = 2 scaffold_23 + intron 1992483-1992563 asmbl_30671 scaffold_23 + retained_intron 1992483-1992563 asmbl_30672 // Retained and Spliced Intron # retained_intron 2160936-2161036 (orient:+) max_ev_support = 1 # spliced_intron 2160936-2161036 (orient:+) max_ev_support = 2 scaffold_23 + intron 2160936-2161036 asmbl_30679 scaffold_23 + retained_intron 2160936-2161036 asmbl_30680 // Retained and Spliced Intron # retained_intron 2305426-2306387 (orient:+) max_ev_support = 2 # spliced_intron 2305426-2306387 (orient:+) max_ev_support = 3 scaffold_23 + intron 2305426-2306387 asmbl_30686 scaffold_23 + retained_intron 2305426-2306387 asmbl_30687 // Exon Skipping and Retention # skipped_exon 2633997-2635130 (orient:+) max_ev_support = 1 # retained_exon 2634795-2634920 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 2634795-2634920 asmbl_30712,asmbl_30714,asmbl_30716 scaffold_23 + intron_skips_exon 2633997-2635130 asmbl_30713 // Retained and Spliced Intron # retained_intron 2647054-2647286 (orient:+) max_ev_support = 1 # spliced_intron 2647054-2647286 (orient:+) max_ev_support = 2 scaffold_23 + intron 2647054-2647286 asmbl_30718 scaffold_23 + retained_intron 2647054-2647286 asmbl_30720 // Exon Skipping and Retention # skipped_exon 2728397-2729974 (orient:+) max_ev_support = 2 # retained_exon 2728666-2728728 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 2728666-2728728 asmbl_30724 scaffold_23 + intron_skips_exon 2728397-2729974 asmbl_30723 // Exon Skipping and Retention # skipped_exon 3436537-3437379 (orient:+) max_ev_support = 1 # retained_exon 3436954-3437001 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 3436954-3437001 asmbl_30737 scaffold_23 + intron_skips_exon 3436537-3437379 asmbl_30738 // Retained and Spliced Intron # retained_intron 3573591-3574929 (orient:+) max_ev_support = 2 # spliced_intron 3573591-3574929 (orient:+) max_ev_support = 2 scaffold_23 + intron 3573591-3574929 asmbl_30745,asmbl_30748 scaffold_23 + retained_intron 3573591-3574929 asmbl_30747 // Retained and Spliced Intron # retained_intron 3655994-3656154 (orient:+) max_ev_support = 3 # spliced_intron 3655994-3656154 (orient:+) max_ev_support = 2 scaffold_23 + intron 3655994-3656154 asmbl_30764 scaffold_23 + retained_intron 3655994-3656154 asmbl_30763,asmbl_30765 // Retained and Spliced Intron # retained_intron 3656249-3656339 (orient:+) max_ev_support = 3 # spliced_intron 3656249-3656339 (orient:+) max_ev_support = 2 scaffold_23 + intron 3656249-3656339 asmbl_30764,asmbl_30765 scaffold_23 + retained_intron 3656249-3656339 asmbl_30763 // Retained and Spliced Intron # retained_intron 4167441-4167665 (orient:+) max_ev_support = 3 # spliced_intron 4167441-4167665 (orient:+) max_ev_support = 2 scaffold_23 + intron 4167441-4167665 asmbl_30792,asmbl_30793 scaffold_23 + retained_intron 4167441-4167665 asmbl_30791 // Retained and Spliced Intron # retained_intron 4314274-4314425 (orient:+) max_ev_support = 2 # spliced_intron 4314274-4314425 (orient:+) max_ev_support = 2 scaffold_23 + intron 4314274-4314425 asmbl_30800,asmbl_30801,asmbl_30805 scaffold_23 + retained_intron 4314274-4314425 asmbl_30798,asmbl_30799 // Retained and Spliced Intron # retained_intron 4315627-4315866 (orient:+) max_ev_support = 1 # spliced_intron 4315627-4315866 (orient:+) max_ev_support = 2 scaffold_23 + intron 4315627-4315866 asmbl_30800 scaffold_23 + retained_intron 4315627-4315866 asmbl_30798,asmbl_30799 // Retained and Spliced Intron # retained_intron 4315991-4316097 (orient:+) max_ev_support = 1 # spliced_intron 4315991-4316097 (orient:+) max_ev_support = 2 scaffold_23 + intron 4315991-4316097 asmbl_30798,asmbl_30800 scaffold_23 + retained_intron 4315991-4316097 asmbl_30799 // Retained and Spliced Intron # retained_intron 4316512-4316611 (orient:+) max_ev_support = 2 # spliced_intron 4316512-4316611 (orient:+) max_ev_support = 2 scaffold_23 + intron 4316512-4316611 asmbl_30798,asmbl_30799,asmbl_30800 scaffold_23 + retained_intron 4316512-4316611 asmbl_30802 // Retained and Spliced Intron # retained_intron 4311119-4313057 (orient:+) max_ev_support = 1 # spliced_intron 4311119-4313057 (orient:+) max_ev_support = 2 scaffold_23 + intron 4311119-4313057 asmbl_30798,asmbl_30799,asmbl_30800,asmbl_30801 scaffold_23 + retained_intron 4311119-4313057 asmbl_30803 // Retained and Spliced Intron # retained_intron 4312110-4313057 (orient:+) max_ev_support = 1 # spliced_intron 4312110-4313057 (orient:+) max_ev_support = 1 scaffold_23 + intron 4312110-4313057 asmbl_30804 scaffold_23 + retained_intron 4312110-4313057 asmbl_30803 // Retained and Spliced Intron # retained_intron 4900167-4900265 (orient:+) max_ev_support = 2 # spliced_intron 4900167-4900265 (orient:+) max_ev_support = 3 scaffold_23 + intron 4900167-4900265 asmbl_30833,asmbl_30834,asmbl_30836 scaffold_23 + retained_intron 4900167-4900265 asmbl_30835 // Retained and Spliced Intron # retained_intron 4899125-4899400 (orient:+) max_ev_support = 1 # spliced_intron 4899125-4899400 (orient:+) max_ev_support = 3 scaffold_23 + intron 4899125-4899400 asmbl_30834 scaffold_23 + retained_intron 4899125-4899400 asmbl_30836 // Retained and Spliced Intron # retained_intron 4899316-4899400 (orient:+) max_ev_support = 1 # spliced_intron 4899316-4899400 (orient:+) max_ev_support = 3 scaffold_23 + intron 4899316-4899400 asmbl_30833 scaffold_23 + retained_intron 4899316-4899400 asmbl_30836 // Exon Skipping and Retention # skipped_exon 4949839-4950422 (orient:+) max_ev_support = 3 # retained_exon 4950067-4950205 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 4950067-4950205 asmbl_30838 scaffold_23 + intron_skips_exon 4949839-4950422 asmbl_30837 // Retained and Spliced Intron # retained_intron 4950206-4950422 (orient:+) max_ev_support = 2 # spliced_intron 4950206-4950422 (orient:+) max_ev_support = 2 scaffold_23 + intron 4950206-4950422 asmbl_30838 scaffold_23 + retained_intron 4950206-4950422 asmbl_30839 // Retained and Spliced Intron # retained_intron 5303321-5303517 (orient:+) max_ev_support = 3 # spliced_intron 5303321-5303517 (orient:+) max_ev_support = 2 scaffold_23 + intron 5303321-5303517 asmbl_30857 scaffold_23 + retained_intron 5303321-5303517 asmbl_30853,asmbl_30854,asmbl_30855,asmbl_30856 // Retained and Spliced Intron # retained_intron 5303670-5303795 (orient:+) max_ev_support = 3 # spliced_intron 5303670-5303795 (orient:+) max_ev_support = 3 scaffold_23 + intron 5303670-5303795 asmbl_30854,asmbl_30856 scaffold_23 + retained_intron 5303670-5303795 asmbl_30853,asmbl_30855 // Retained and Spliced Intron # retained_intron 5583740-5583837 (orient:+) max_ev_support = 2 # spliced_intron 5583740-5583837 (orient:+) max_ev_support = 1 scaffold_23 + intron 5583740-5583837 asmbl_30884 scaffold_23 + retained_intron 5583740-5583837 asmbl_30882 // Exon Skipping and Retention # skipped_exon 5583740-5584093 (orient:+) max_ev_support = 3 # retained_exon 5583838-5583875 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5583838-5583875 asmbl_30884 scaffold_23 + intron_skips_exon 5583740-5584093 asmbl_30881 // Exon Skipping and Retention # skipped_exon 5583740-5584101 (orient:+) max_ev_support = 1 # retained_exon 5583838-5583875 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5583838-5583875 asmbl_30884 scaffold_23 + intron_skips_exon 5583740-5584101 asmbl_30885 // Retained and Spliced Intron # retained_intron 5732593-5732880 (orient:+) max_ev_support = 3 # spliced_intron 5732593-5732880 (orient:+) max_ev_support = 3 scaffold_23 + intron 5732593-5732880 asmbl_30888 scaffold_23 + retained_intron 5732593-5732880 asmbl_30889,asmbl_30890 // Retained and Spliced Intron # retained_intron 5851943-5852135 (orient:+) max_ev_support = 3 # spliced_intron 5851943-5852135 (orient:+) max_ev_support = 3 scaffold_23 + intron 5851943-5852135 asmbl_30896 scaffold_23 + retained_intron 5851943-5852135 asmbl_30895 // Exon Skipping and Retention # skipped_exon 5858438-5860167 (orient:+) max_ev_support = 3 # retained_exon 5859322-5859333 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 5859322-5859333 asmbl_30900 scaffold_23 + intron_skips_exon 5858438-5860167 asmbl_30899 // Exon Skipping and Retention # skipped_exon 6330942-6332799 (orient:+) max_ev_support = 2 # retained_exon 6331560-6332174 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 6331560-6332174 asmbl_30909 scaffold_23 + intron_skips_exon 6330942-6332799 asmbl_30907 // Retained and Spliced Intron # retained_intron 6632390-6632499 (orient:+) max_ev_support = 1 # spliced_intron 6632390-6632499 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632390-6632499 asmbl_30928,asmbl_30931,asmbl_30932,asmbl_30933,asmbl_30934 scaffold_23 + retained_intron 6632390-6632499 asmbl_30930 // Retained and Spliced Intron # retained_intron 6633740-6633978 (orient:+) max_ev_support = 1 # spliced_intron 6633740-6633978 (orient:+) max_ev_support = 2 scaffold_23 + intron 6633740-6633978 asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30933,asmbl_30934,asmbl_30935,asmbl_30936 scaffold_23 + retained_intron 6633740-6633978 asmbl_30932 // Retained and Spliced Intron # retained_intron 6634496-6634635 (orient:+) max_ev_support = 1 # spliced_intron 6634496-6634635 (orient:+) max_ev_support = 2 scaffold_23 + intron 6634496-6634635 asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30933,asmbl_30934,asmbl_30935,asmbl_30936 scaffold_23 + retained_intron 6634496-6634635 asmbl_30932 // Retained and Spliced Intron # retained_intron 6632661-6632755 (orient:+) max_ev_support = 1 # spliced_intron 6632661-6632755 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632661-6632755 asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30932,asmbl_30933 scaffold_23 + retained_intron 6632661-6632755 asmbl_30934,asmbl_30935 // Retained and Spliced Intron # retained_intron 6632892-6633001 (orient:+) max_ev_support = 1 # spliced_intron 6632892-6633001 (orient:+) max_ev_support = 2 scaffold_23 + intron 6632892-6633001 asmbl_30928,asmbl_30930,asmbl_30931,asmbl_30932,asmbl_30933,asmbl_30934,asmbl_30935 scaffold_23 + retained_intron 6632892-6633001 asmbl_30936 // Retained and Spliced Intron # retained_intron 6688346-6688422 (orient:+) max_ev_support = 1 # spliced_intron 6688346-6688422 (orient:+) max_ev_support = 1 scaffold_23 + intron 6688346-6688422 asmbl_30945 scaffold_23 + retained_intron 6688346-6688422 asmbl_30943,asmbl_30944 // Retained and Spliced Intron # retained_intron 6778984-6779031 (orient:+) max_ev_support = 1 # spliced_intron 6778984-6779031 (orient:+) max_ev_support = 1 scaffold_23 + intron 6778984-6779031 asmbl_30950 scaffold_23 + retained_intron 6778984-6779031 asmbl_30951 // Exon Skipping and Retention # skipped_exon 7235072-7235671 (orient:+) max_ev_support = 1 # retained_exon 7235231-7235352 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 7235231-7235352 asmbl_30978,asmbl_30979 scaffold_23 + intron_skips_exon 7235072-7235671 asmbl_30980 // Retained and Spliced Intron # retained_intron 7388982-7389133 (orient:+) max_ev_support = 2 # spliced_intron 7388982-7389133 (orient:+) max_ev_support = 1 scaffold_23 + intron 7388982-7389133 asmbl_30987 scaffold_23 + retained_intron 7388982-7389133 asmbl_30986 // Exon Skipping and Retention # skipped_exon 7661718-7664117 (orient:+) max_ev_support = 1 # retained_exon 7662287-7662625 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 7662287-7662625 asmbl_31001 scaffold_23 + intron_skips_exon 7661718-7664117 asmbl_31002 // Exon Skipping and Retention # skipped_exon 7683923-7685948 (orient:+) max_ev_support = 1 # retained_exon 7684372-7685166 (orient:+) max_ev_support = 3 scaffold_23 + retained_exons 7684372-7684483,7685005-7685166 asmbl_31007,asmbl_31008,asmbl_31014 scaffold_23 + intron_skips_exon 7683923-7685948 asmbl_31015 // Exon Skipping and Retention # skipped_exon 7686045-7687381 (orient:+) max_ev_support = 3 # retained_exon 7686484-7686587 (orient:+) max_ev_support = 3 scaffold_23 + retained_exons 7686484-7686587 asmbl_31007,asmbl_31013 scaffold_23 + intron_skips_exon 7686045-7687381 asmbl_31008,asmbl_31010,asmbl_31015 // Retained and Spliced Intron # retained_intron 7686588-7687381 (orient:+) max_ev_support = 2 # spliced_intron 7686588-7687381 (orient:+) max_ev_support = 3 scaffold_23 + intron 7686588-7687381 asmbl_31007,asmbl_31013 scaffold_23 + retained_intron 7686588-7687381 asmbl_31011,asmbl_31012,asmbl_31014 // Retained and Spliced Intron # retained_intron 7686045-7686483 (orient:+) max_ev_support = 2 # spliced_intron 7686045-7686483 (orient:+) max_ev_support = 3 scaffold_23 + intron 7686045-7686483 asmbl_31007,asmbl_31011,asmbl_31013,asmbl_31014 scaffold_23 + retained_intron 7686045-7686483 asmbl_31012 // Retained and Spliced Intron # retained_intron 7686045-7687381 (orient:+) max_ev_support = 2 # spliced_intron 7686045-7687381 (orient:+) max_ev_support = 3 scaffold_23 + intron 7686045-7687381 asmbl_31008,asmbl_31010,asmbl_31015 scaffold_23 + retained_intron 7686045-7687381 asmbl_31012 // Exon Skipping and Retention # skipped_exon 7690759-7691956 (orient:+) max_ev_support = 1 # retained_exon 7691095-7691195 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 7691095-7691195 asmbl_31018 scaffold_23 + intron_skips_exon 7690759-7691956 asmbl_31019 // Retained and Spliced Intron # retained_intron 7701820-7701972 (orient:+) max_ev_support = 1 # spliced_intron 7701820-7701972 (orient:+) max_ev_support = 1 scaffold_23 + intron 7701820-7701972 asmbl_31021 scaffold_23 + retained_intron 7701820-7701972 asmbl_31020 // Retained and Spliced Intron # retained_intron 7982612-7982719 (orient:+) max_ev_support = 1 # spliced_intron 7982612-7982719 (orient:+) max_ev_support = 1 scaffold_23 + intron 7982612-7982719 asmbl_31042 scaffold_23 + retained_intron 7982612-7982719 asmbl_31043 // Retained and Spliced Intron # retained_intron 7982619-7982719 (orient:+) max_ev_support = 1 # spliced_intron 7982619-7982719 (orient:+) max_ev_support = 1 scaffold_23 + intron 7982619-7982719 asmbl_31041 scaffold_23 + retained_intron 7982619-7982719 asmbl_31043 // Retained and Spliced Intron # retained_intron 7984376-7984498 (orient:+) max_ev_support = 1 # spliced_intron 7984376-7984498 (orient:+) max_ev_support = 1 scaffold_23 + intron 7984376-7984498 asmbl_31041,asmbl_31042,asmbl_31043 scaffold_23 + retained_intron 7984376-7984498 asmbl_31044 // Retained and Spliced Intron # retained_intron 8004144-8004189 (orient:+) max_ev_support = 3 # spliced_intron 8004144-8004189 (orient:+) max_ev_support = 1 scaffold_23 + intron 8004144-8004189 asmbl_31049 scaffold_23 + retained_intron 8004144-8004189 asmbl_31048 // Exon Skipping and Retention # skipped_exon 8101894-8102804 (orient:+) max_ev_support = 1 # retained_exon 8102329-8102386 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 8102329-8102386 asmbl_31055 scaffold_23 + intron_skips_exon 8101894-8102804 asmbl_31056 // Exon Skipping and Retention # skipped_exon 8102387-8103421 (orient:+) max_ev_support = 1 # retained_exon 8102805-8102862 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 8102805-8102862 asmbl_31056 scaffold_23 + intron_skips_exon 8102387-8103421 asmbl_31055 // Retained and Spliced Intron # retained_intron 8104276-8104414 (orient:+) max_ev_support = 1 # spliced_intron 8104276-8104414 (orient:+) max_ev_support = 1 scaffold_23 + intron 8104276-8104414 asmbl_31055,asmbl_31056 scaffold_23 + retained_intron 8104276-8104414 asmbl_31057 // Exon Skipping and Retention # skipped_exon 8199021-8199981 (orient:+) max_ev_support = 1 # retained_exon 8199528-8199703 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 8199528-8199703 asmbl_31060,asmbl_31064,asmbl_31065 scaffold_23 + intron_skips_exon 8199021-8199981 asmbl_31063 // Retained and Spliced Intron # retained_intron 8843715-8843755 (orient:+) max_ev_support = 2 # spliced_intron 8843715-8843755 (orient:+) max_ev_support = 1 scaffold_23 + intron 8843715-8843755 asmbl_31084 scaffold_23 + retained_intron 8843715-8843755 asmbl_31083 // Exon Skipping and Retention # skipped_exon 9329762-9331870 (orient:+) max_ev_support = 1 # retained_exon 9330149-9330175 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 9330149-9330175 asmbl_31086 scaffold_23 + intron_skips_exon 9329762-9331870 asmbl_31088 // Retained and Spliced Intron # retained_intron 9425520-9425631 (orient:+) max_ev_support = 3 # spliced_intron 9425520-9425631 (orient:+) max_ev_support = 1 scaffold_23 + intron 9425520-9425631 asmbl_31091,asmbl_31092 scaffold_23 + retained_intron 9425520-9425631 asmbl_31090 // Retained and Spliced Intron # retained_intron 9886338-9886445 (orient:+) max_ev_support = 2 # spliced_intron 9886338-9886445 (orient:+) max_ev_support = 2 scaffold_23 + intron 9886338-9886445 asmbl_31099,asmbl_31101 scaffold_23 + retained_intron 9886338-9886445 asmbl_31100 // Retained and Spliced Intron # retained_intron 10020609-10020721 (orient:+) max_ev_support = 1 # spliced_intron 10020609-10020721 (orient:+) max_ev_support = 2 scaffold_23 + intron 10020609-10020721 asmbl_31117,asmbl_31121 scaffold_23 + retained_intron 10020609-10020721 asmbl_31120 // Retained and Spliced Intron # retained_intron 10213636-10214194 (orient:+) max_ev_support = 2 # spliced_intron 10213636-10214194 (orient:+) max_ev_support = 2 scaffold_23 + intron 10213636-10214194 asmbl_31133 scaffold_23 + retained_intron 10213636-10214194 asmbl_31132,asmbl_31135 // Retained and Spliced Intron # retained_intron 10230166-10230202 (orient:+) max_ev_support = 1 # spliced_intron 10230166-10230202 (orient:+) max_ev_support = 1 scaffold_23 + intron 10230166-10230202 asmbl_31137 scaffold_23 + retained_intron 10230166-10230202 asmbl_31138 // Retained and Spliced Intron # retained_intron 10330988-10331059 (orient:+) max_ev_support = 1 # spliced_intron 10330988-10331059 (orient:+) max_ev_support = 1 scaffold_23 + intron 10330988-10331059 asmbl_31144 scaffold_23 + retained_intron 10330988-10331059 asmbl_31142,asmbl_31143 // Retained and Spliced Intron # retained_intron 10331164-10331283 (orient:+) max_ev_support = 1 # spliced_intron 10331164-10331283 (orient:+) max_ev_support = 1 scaffold_23 + intron 10331164-10331283 asmbl_31143 scaffold_23 + retained_intron 10331164-10331283 asmbl_31144 // Retained and Spliced Intron # retained_intron 10331210-10331237 (orient:+) max_ev_support = 1 # spliced_intron 10331210-10331237 (orient:+) max_ev_support = 1 scaffold_23 + intron 10331210-10331237 asmbl_31142 scaffold_23 + retained_intron 10331210-10331237 asmbl_31144 // Exon Skipping and Retention # skipped_exon 10698860-10701583 (orient:+) max_ev_support = 1 # retained_exon 10700992-10701050 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 10700992-10701050 asmbl_31160 scaffold_23 + intron_skips_exon 10698860-10701583 asmbl_31161 // Exon Skipping and Retention # skipped_exon 10701051-10702423 (orient:+) max_ev_support = 1 # retained_exon 10701584-10701642 (orient:+) max_ev_support = 1 scaffold_23 + retained_exons 10701584-10701642 asmbl_31161 scaffold_23 + intron_skips_exon 10701051-10702423 asmbl_31160 // Retained and Spliced Intron # retained_intron 10894395-10894488 (orient:+) max_ev_support = 2 # spliced_intron 10894395-10894488 (orient:+) max_ev_support = 1 scaffold_23 + intron 10894395-10894488 asmbl_31179 scaffold_23 + retained_intron 10894395-10894488 asmbl_31178 // Retained and Spliced Intron # retained_intron 10897406-10897583 (orient:+) max_ev_support = 1 # spliced_intron 10897406-10897583 (orient:+) max_ev_support = 2 scaffold_23 + intron 10897406-10897583 asmbl_31181 scaffold_23 + retained_intron 10897406-10897583 asmbl_31182 // Retained and Spliced Intron # retained_intron 10897406-10897606 (orient:+) max_ev_support = 1 # spliced_intron 10897406-10897606 (orient:+) max_ev_support = 2 scaffold_23 + intron 10897406-10897606 asmbl_31180 scaffold_23 + retained_intron 10897406-10897606 asmbl_31182 // Retained and Spliced Intron # retained_intron 10975035-10975280 (orient:+) max_ev_support = 1 # spliced_intron 10975035-10975280 (orient:+) max_ev_support = 2 scaffold_23 + intron 10975035-10975280 asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31193,asmbl_31194,asmbl_31195,asmbl_31196,asmbl_31197 scaffold_23 + retained_intron 10975035-10975280 asmbl_31184,asmbl_31198 // Retained and Spliced Intron # retained_intron 10977476-10977635 (orient:+) max_ev_support = 2 # spliced_intron 10977476-10977635 (orient:+) max_ev_support = 2 scaffold_23 + intron 10977476-10977635 asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31194,asmbl_31195,asmbl_31196 scaffold_23 + retained_intron 10977476-10977635 asmbl_31185,asmbl_31187,asmbl_31192,asmbl_31193 // Exon Skipping and Retention # skipped_exon 10975457-10977281 (orient:+) max_ev_support = 1 # retained_exon 10976189-10976361 (orient:+) max_ev_support = 2 scaffold_23 + retained_exons 10976189-10976361 asmbl_31186,asmbl_31189,asmbl_31191,asmbl_31194,asmbl_31195,asmbl_31196 scaffold_23 + intron_skips_exon 10975457-10977281 asmbl_31193 // Retained and Spliced Intron # retained_intron 10977777-10977923 (orient:+) max_ev_support = 2 # spliced_intron 10977777-10977923 (orient:+) max_ev_support = 2 scaffold_23 + intron 10977777-10977923 asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31193 scaffold_23 + retained_intron 10977777-10977923 asmbl_31187,asmbl_31189,asmbl_31192,asmbl_31194,asmbl_31195,asmbl_31196 // Retained and Spliced Intron # retained_intron 10978092-10978827 (orient:+) max_ev_support = 2 # spliced_intron 10978092-10978827 (orient:+) max_ev_support = 2 scaffold_23 + intron 10978092-10978827 asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31193 scaffold_23 + retained_intron 10978092-10978827 asmbl_31187,asmbl_31189,asmbl_31192,asmbl_31194,asmbl_31195,asmbl_31196 // Retained and Spliced Intron # retained_intron 10978895-10979242 (orient:+) max_ev_support = 2 # spliced_intron 10978895-10979242 (orient:+) max_ev_support = 2 scaffold_23 + intron 10978895-10979242 asmbl_31185,asmbl_31186,asmbl_31191,asmbl_31192,asmbl_31193,asmbl_31194,asmbl_31196 scaffold_23 + retained_intron 10978895-10979242 asmbl_31187,asmbl_31189,asmbl_31195 // Retained and Spliced Intron # retained_intron 245837-246226 (orient:-) max_ev_support = 2 # spliced_intron 245837-246226 (orient:-) max_ev_support = 2 scaffold_23 - intron 245837-246226 asmbl_31288 scaffold_23 - retained_intron 245837-246226 asmbl_31287 // Retained and Spliced Intron # retained_intron 248951-249926 (orient:-) max_ev_support = 2 # spliced_intron 248951-249926 (orient:-) max_ev_support = 2 scaffold_23 - intron 248951-249926 asmbl_31290 scaffold_23 - retained_intron 248951-249926 asmbl_31289 // Retained and Spliced Intron # retained_intron 362282-362408 (orient:-) max_ev_support = 2 # spliced_intron 362282-362408 (orient:-) max_ev_support = 1 scaffold_23 - intron 362282-362408 asmbl_31319 scaffold_23 - retained_intron 362282-362408 asmbl_31310,asmbl_31311,asmbl_31313,asmbl_31314,asmbl_31317 // Retained and Spliced Intron # retained_intron 362285-362464 (orient:-) max_ev_support = 2 # spliced_intron 362285-362464 (orient:-) max_ev_support = 1 scaffold_23 - intron 362285-362464 asmbl_31315,asmbl_31320 scaffold_23 - retained_intron 362285-362464 asmbl_31310,asmbl_31311,asmbl_31313,asmbl_31314,asmbl_31317 // Retained and Spliced Intron # retained_intron 811002-811092 (orient:-) max_ev_support = 2 # spliced_intron 811002-811092 (orient:-) max_ev_support = 3 scaffold_23 - intron 811002-811092 asmbl_31325 scaffold_23 - retained_intron 811002-811092 asmbl_31327 // Retained and Spliced Intron # retained_intron 1399387-1399546 (orient:-) max_ev_support = 2 # spliced_intron 1399387-1399546 (orient:-) max_ev_support = 2 scaffold_23 - intron 1399387-1399546 asmbl_31357 scaffold_23 - retained_intron 1399387-1399546 asmbl_31358 // Retained and Spliced Intron # retained_intron 1514785-1514962 (orient:-) max_ev_support = 1 # spliced_intron 1514785-1514962 (orient:-) max_ev_support = 2 scaffold_23 - intron 1514785-1514962 asmbl_31372 scaffold_23 - retained_intron 1514785-1514962 asmbl_31373 // Retained and Spliced Intron # retained_intron 2016514-2016841 (orient:-) max_ev_support = 2 # spliced_intron 2016514-2016841 (orient:-) max_ev_support = 1 scaffold_23 - intron 2016514-2016841 asmbl_31400 scaffold_23 - retained_intron 2016514-2016841 asmbl_31399 // Retained and Spliced Intron # retained_intron 2032895-2033003 (orient:-) max_ev_support = 2 # spliced_intron 2032895-2033003 (orient:-) max_ev_support = 1 scaffold_23 - intron 2032895-2033003 asmbl_31407 scaffold_23 - retained_intron 2032895-2033003 asmbl_31406 // Retained and Spliced Intron # retained_intron 2126799-2127196 (orient:-) max_ev_support = 3 # spliced_intron 2126799-2127196 (orient:-) max_ev_support = 3 scaffold_23 - intron 2126799-2127196 asmbl_31409,asmbl_31410 scaffold_23 - retained_intron 2126799-2127196 asmbl_31408 // Retained and Spliced Intron # retained_intron 2127756-2128017 (orient:-) max_ev_support = 2 # spliced_intron 2127756-2128017 (orient:-) max_ev_support = 3 scaffold_23 - intron 2127756-2128017 asmbl_31408,asmbl_31409 scaffold_23 - retained_intron 2127756-2128017 asmbl_31410 // Retained and Spliced Intron # retained_intron 2151002-2151100 (orient:-) max_ev_support = 2 # spliced_intron 2151002-2151100 (orient:-) max_ev_support = 2 scaffold_23 - intron 2151002-2151100 asmbl_31413,asmbl_31415 scaffold_23 - retained_intron 2151002-2151100 asmbl_31414 // Retained and Spliced Intron # retained_intron 2164879-2165545 (orient:-) max_ev_support = 1 # spliced_intron 2164879-2165545 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164879-2165545 asmbl_31418,asmbl_31419,asmbl_31420,asmbl_31421,asmbl_31422 scaffold_23 - retained_intron 2164879-2165545 asmbl_31417,asmbl_31423 // Exon Skipping and Retention # skipped_exon 2164190-2164645 (orient:-) max_ev_support = 1 # retained_exon 2164418-2164595 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2164418-2164595 asmbl_31418 scaffold_23 - intron_skips_exon 2164190-2164645 asmbl_31419 // Exon Skipping and Retention # skipped_exon 2164335-2164790 (orient:-) max_ev_support = 1 # retained_exon 2164418-2164595 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2164418-2164595 asmbl_31418 scaffold_23 - intron_skips_exon 2164335-2164790 asmbl_31423 // Retained and Spliced Intron # retained_intron 2164190-2164417 (orient:-) max_ev_support = 1 # spliced_intron 2164190-2164417 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164190-2164417 asmbl_31418,asmbl_31422 scaffold_23 - retained_intron 2164190-2164417 asmbl_31420,asmbl_31421 // Retained and Spliced Intron # retained_intron 2164190-2164645 (orient:-) max_ev_support = 1 # spliced_intron 2164190-2164645 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164190-2164645 asmbl_31419 scaffold_23 - retained_intron 2164190-2164645 asmbl_31421 // Retained and Spliced Intron # retained_intron 2164335-2164790 (orient:-) max_ev_support = 1 # spliced_intron 2164335-2164790 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164335-2164790 asmbl_31423 scaffold_23 - retained_intron 2164335-2164790 asmbl_31421 // Retained and Spliced Intron # retained_intron 2164418-2164645 (orient:-) max_ev_support = 1 # spliced_intron 2164418-2164645 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164418-2164645 asmbl_31417 scaffold_23 - retained_intron 2164418-2164645 asmbl_31421 // Retained and Spliced Intron # retained_intron 2164596-2164823 (orient:-) max_ev_support = 1 # spliced_intron 2164596-2164823 (orient:-) max_ev_support = 1 scaffold_23 - intron 2164596-2164823 asmbl_31418,asmbl_31420 scaffold_23 - retained_intron 2164596-2164823 asmbl_31421,asmbl_31422 // Retained and Spliced Intron # retained_intron 2197978-2198128 (orient:-) max_ev_support = 1 # spliced_intron 2197978-2198128 (orient:-) max_ev_support = 1 scaffold_23 - intron 2197978-2198128 asmbl_31429 scaffold_23 - retained_intron 2197978-2198128 asmbl_31428 // Exon Skipping and Retention # skipped_exon 2199414-2200397 (orient:-) max_ev_support = 1 # retained_exon 2200248-2200289 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 2200248-2200289 asmbl_31429 scaffold_23 - intron_skips_exon 2199414-2200397 asmbl_31428 // Retained and Spliced Intron # retained_intron 2326610-2326740 (orient:-) max_ev_support = 4 # spliced_intron 2326610-2326740 (orient:-) max_ev_support = 1 scaffold_23 - intron 2326610-2326740 asmbl_31451 scaffold_23 - retained_intron 2326610-2326740 asmbl_31450 // Retained and Spliced Intron # retained_intron 2585757-2586468 (orient:-) max_ev_support = 3 # spliced_intron 2585757-2586468 (orient:-) max_ev_support = 2 scaffold_23 - intron 2585757-2586468 asmbl_31462 scaffold_23 - retained_intron 2585757-2586468 asmbl_31460,asmbl_31463 // Retained and Spliced Intron # retained_intron 2585757-2588165 (orient:-) max_ev_support = 4 # spliced_intron 2585757-2588165 (orient:-) max_ev_support = 2 scaffold_23 - intron 2585757-2588165 asmbl_31461 scaffold_23 - retained_intron 2585757-2588165 asmbl_31460 // Retained and Spliced Intron # retained_intron 2587697-2587898 (orient:-) max_ev_support = 2 # spliced_intron 2587697-2587898 (orient:-) max_ev_support = 1 scaffold_23 - intron 2587697-2587898 asmbl_31462 scaffold_23 - retained_intron 2587697-2587898 asmbl_31460,asmbl_31464 // Exon Skipping and Retention # skipped_exon 2585757-2588165 (orient:-) max_ev_support = 2 # retained_exon 2586469-2587696 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 2586469-2587696 asmbl_31462 scaffold_23 - intron_skips_exon 2585757-2588165 asmbl_31461 // Retained and Spliced Intron # retained_intron 2585219-2585676 (orient:-) max_ev_support = 1 # spliced_intron 2585219-2585676 (orient:-) max_ev_support = 3 scaffold_23 - intron 2585219-2585676 asmbl_31460,asmbl_31461,asmbl_31462 scaffold_23 - retained_intron 2585219-2585676 asmbl_31463 // Retained and Spliced Intron # retained_intron 2604317-2604475 (orient:-) max_ev_support = 1 # spliced_intron 2604317-2604475 (orient:-) max_ev_support = 2 scaffold_23 - intron 2604317-2604475 asmbl_31467 scaffold_23 - retained_intron 2604317-2604475 asmbl_31468 // Exon Skipping and Retention # skipped_exon 2615438-2616744 (orient:-) max_ev_support = 2 # retained_exon 2615904-2615926 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 2615904-2615926 asmbl_31469,asmbl_31471,asmbl_31473,asmbl_31474 scaffold_23 - intron_skips_exon 2615438-2616744 asmbl_31470,asmbl_31476 // Retained and Spliced Intron # retained_intron 2610389-2611916 (orient:-) max_ev_support = 1 # spliced_intron 2610389-2611916 (orient:-) max_ev_support = 2 scaffold_23 - intron 2610389-2611916 asmbl_31469,asmbl_31470,asmbl_31471,asmbl_31473 scaffold_23 - retained_intron 2610389-2611916 asmbl_31472 // Retained and Spliced Intron # retained_intron 2608885-2609300 (orient:-) max_ev_support = 1 # spliced_intron 2608885-2609300 (orient:-) max_ev_support = 2 scaffold_23 - intron 2608885-2609300 asmbl_31469,asmbl_31470,asmbl_31471,asmbl_31472 scaffold_23 - retained_intron 2608885-2609300 asmbl_31473 // Retained and Spliced Intron # retained_intron 3233100-3233254 (orient:-) max_ev_support = 2 # spliced_intron 3233100-3233254 (orient:-) max_ev_support = 2 scaffold_23 - intron 3233100-3233254 asmbl_31508 scaffold_23 - retained_intron 3233100-3233254 asmbl_31509 // Exon Skipping and Retention # skipped_exon 3447214-3449029 (orient:-) max_ev_support = 1 # retained_exon 3448205-3448277 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 3448205-3448277 asmbl_31514 scaffold_23 - intron_skips_exon 3447214-3449029 asmbl_31513 // Retained and Spliced Intron # retained_intron 3510274-3510858 (orient:-) max_ev_support = 4 # spliced_intron 3510274-3510858 (orient:-) max_ev_support = 2 scaffold_23 - intron 3510274-3510858 asmbl_31522 scaffold_23 - retained_intron 3510274-3510858 asmbl_31521 // Exon Skipping and Retention # skipped_exon 4100717-4102604 (orient:-) max_ev_support = 1 # retained_exon 4101046-4101228 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 4101046-4101228 asmbl_31549,asmbl_31554 scaffold_23 - intron_skips_exon 4100717-4102604 asmbl_31552,asmbl_31553 // Exon Skipping and Retention # skipped_exon 4099715-4100533 (orient:-) max_ev_support = 1 # retained_exon 4100078-4100213 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4100078-4100213 asmbl_31552 scaffold_23 - intron_skips_exon 4099715-4100533 asmbl_31553 // Exon Skipping and Retention # skipped_exon 4099715-4101045 (orient:-) max_ev_support = 1 # retained_exon 4100078-4100716 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4100078-4100213,4100534-4100716 asmbl_31552 scaffold_23 - intron_skips_exon 4099715-4101045 asmbl_31549,asmbl_31554 // Exon Skipping and Retention # skipped_exon 4099715-4101045 (orient:-) max_ev_support = 1 # retained_exon 4100534-4100716 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4100534-4100716 asmbl_31553 scaffold_23 - intron_skips_exon 4099715-4101045 asmbl_31549,asmbl_31554 // Exon Skipping and Retention # skipped_exon 4226097-4226699 (orient:-) max_ev_support = 1 # retained_exon 4226413-4226552 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 4226413-4226552 asmbl_31568,asmbl_31569,asmbl_31571,asmbl_31573,asmbl_31574,asmbl_31575 scaffold_23 - intron_skips_exon 4226097-4226699 asmbl_31570 // Exon Skipping and Retention # skipped_exon 4228322-4229663 (orient:-) max_ev_support = 2 # retained_exon 4228479-4229383 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 4228479-4229383 asmbl_31571 scaffold_23 - intron_skips_exon 4228322-4229663 asmbl_31568,asmbl_31573 // Exon Skipping and Retention # skipped_exon 4321528-4322836 (orient:-) max_ev_support = 2 # retained_exon 4322149-4322192 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 4322149-4322192 asmbl_31581 scaffold_23 - intron_skips_exon 4321528-4322836 asmbl_31582 // Retained and Spliced Intron # retained_intron 4449748-4450584 (orient:-) max_ev_support = 5 # spliced_intron 4449748-4450584 (orient:-) max_ev_support = 1 scaffold_23 - intron 4449748-4450584 asmbl_31591 scaffold_23 - retained_intron 4449748-4450584 asmbl_31586,asmbl_31590 // Retained and Spliced Intron # retained_intron 4449754-4449915 (orient:-) max_ev_support = 5 # spliced_intron 4449754-4449915 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449754-4449915 asmbl_31588 scaffold_23 - retained_intron 4449754-4449915 asmbl_31586,asmbl_31590 // Retained and Spliced Intron # retained_intron 4449754-4450584 (orient:-) max_ev_support = 5 # spliced_intron 4449754-4450584 (orient:-) max_ev_support = 3 scaffold_23 - intron 4449754-4450584 asmbl_31587 scaffold_23 - retained_intron 4449754-4450584 asmbl_31586,asmbl_31590 // Retained and Spliced Intron # retained_intron 4449320-4449423 (orient:-) max_ev_support = 2 # spliced_intron 4449320-4449423 (orient:-) max_ev_support = 5 scaffold_23 - intron 4449320-4449423 asmbl_31586,asmbl_31587,asmbl_31588,asmbl_31591 scaffold_23 - retained_intron 4449320-4449423 asmbl_31589 // Exon Skipping and Retention # skipped_exon 5078954-5081541 (orient:-) max_ev_support = 2 # retained_exon 5080495-5080566 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5080495-5080566 asmbl_31600 scaffold_23 - intron_skips_exon 5078954-5081541 asmbl_31601 // Retained and Spliced Intron # retained_intron 5182962-5183052 (orient:-) max_ev_support = 2 # spliced_intron 5182962-5183052 (orient:-) max_ev_support = 1 scaffold_23 - intron 5182962-5183052 asmbl_31616 scaffold_23 - retained_intron 5182962-5183052 asmbl_31615 // Retained and Spliced Intron # retained_intron 5337942-5338313 (orient:-) max_ev_support = 2 # spliced_intron 5337942-5338313 (orient:-) max_ev_support = 3 scaffold_23 - intron 5337942-5338313 asmbl_31626,asmbl_31628,asmbl_31631 scaffold_23 - retained_intron 5337942-5338313 asmbl_31627 // Retained and Spliced Intron # retained_intron 5340412-5340615 (orient:-) max_ev_support = 2 # spliced_intron 5340412-5340615 (orient:-) max_ev_support = 3 scaffold_23 - intron 5340412-5340615 asmbl_31626,asmbl_31627,asmbl_31629,asmbl_31632 scaffold_23 - retained_intron 5340412-5340615 asmbl_31628,asmbl_31630,asmbl_31631 // Retained and Spliced Intron # retained_intron 5339139-5339871 (orient:-) max_ev_support = 2 # spliced_intron 5339139-5339871 (orient:-) max_ev_support = 2 scaffold_23 - intron 5339139-5339871 asmbl_31628,asmbl_31632 scaffold_23 - retained_intron 5339139-5339871 asmbl_31629,asmbl_31630,asmbl_31631 // Retained and Spliced Intron # retained_intron 5339139-5340317 (orient:-) max_ev_support = 2 # spliced_intron 5339139-5340317 (orient:-) max_ev_support = 3 scaffold_23 - intron 5339139-5340317 asmbl_31626,asmbl_31627 scaffold_23 - retained_intron 5339139-5340317 asmbl_31629,asmbl_31630,asmbl_31631 // Exon Skipping and Retention # skipped_exon 5617751-5620236 (orient:-) max_ev_support = 2 # retained_exon 5618925-5619809 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5618925-5619809 asmbl_31645 scaffold_23 - intron_skips_exon 5617751-5620236 asmbl_31644,asmbl_31650 // Exon Skipping and Retention # skipped_exon 5617751-5620236 (orient:-) max_ev_support = 2 # retained_exon 5618925-5619884 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 5618925-5619884 asmbl_31646,asmbl_31648 scaffold_23 - intron_skips_exon 5617751-5620236 asmbl_31644,asmbl_31650 // Retained and Spliced Intron # retained_intron 5709650-5709748 (orient:-) max_ev_support = 2 # spliced_intron 5709650-5709748 (orient:-) max_ev_support = 1 scaffold_23 - intron 5709650-5709748 asmbl_31658 scaffold_23 - retained_intron 5709650-5709748 asmbl_31657 // Exon Skipping and Retention # skipped_exon 5764489-5766611 (orient:-) max_ev_support = 3 # retained_exon 5765227-5765316 (orient:-) max_ev_support = 4 scaffold_23 - retained_exons 5765227-5765316 asmbl_31661 scaffold_23 - intron_skips_exon 5764489-5766611 asmbl_31662 // Retained and Spliced Intron # retained_intron 5849629-5849725 (orient:-) max_ev_support = 2 # spliced_intron 5849629-5849725 (orient:-) max_ev_support = 3 scaffold_23 - intron 5849629-5849725 asmbl_31669 scaffold_23 - retained_intron 5849629-5849725 asmbl_31670 // Exon Skipping and Retention # skipped_exon 5862921-5863836 (orient:-) max_ev_support = 2 # retained_exon 5863162-5863232 (orient:-) max_ev_support = 3 scaffold_23 - retained_exons 5863162-5863232 asmbl_31671 scaffold_23 - intron_skips_exon 5862921-5863836 asmbl_31673 // Retained and Spliced Intron # retained_intron 5861645-5861736 (orient:-) max_ev_support = 2 # spliced_intron 5861645-5861736 (orient:-) max_ev_support = 3 scaffold_23 - intron 5861645-5861736 asmbl_31671,asmbl_31673 scaffold_23 - retained_intron 5861645-5861736 asmbl_31672 // Retained and Spliced Intron # retained_intron 6290063-6290359 (orient:-) max_ev_support = 2 # spliced_intron 6290063-6290359 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290063-6290359 asmbl_31687,asmbl_31692,asmbl_31693 scaffold_23 - retained_intron 6290063-6290359 asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694 // Retained and Spliced Intron # retained_intron 6290510-6290714 (orient:-) max_ev_support = 2 # spliced_intron 6290510-6290714 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290510-6290714 asmbl_31687,asmbl_31692,asmbl_31693 scaffold_23 - retained_intron 6290510-6290714 asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694 // Retained and Spliced Intron # retained_intron 6290838-6290991 (orient:-) max_ev_support = 2 # spliced_intron 6290838-6290991 (orient:-) max_ev_support = 3 scaffold_23 - intron 6290838-6290991 asmbl_31687,asmbl_31692,asmbl_31693 scaffold_23 - retained_intron 6290838-6290991 asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694 // Retained and Spliced Intron # retained_intron 6291131-6291893 (orient:-) max_ev_support = 2 # spliced_intron 6291131-6291893 (orient:-) max_ev_support = 3 scaffold_23 - intron 6291131-6291893 asmbl_31687,asmbl_31692,asmbl_31693 scaffold_23 - retained_intron 6291131-6291893 asmbl_31688,asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31694 // Retained and Spliced Intron # retained_intron 6289122-6289248 (orient:-) max_ev_support = 2 # spliced_intron 6289122-6289248 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289122-6289248 asmbl_31687,asmbl_31688,asmbl_31690,asmbl_31691,asmbl_31692 scaffold_23 - retained_intron 6289122-6289248 asmbl_31689,asmbl_31693,asmbl_31694 // Retained and Spliced Intron # retained_intron 6289367-6289481 (orient:-) max_ev_support = 2 # spliced_intron 6289367-6289481 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289367-6289481 asmbl_31687,asmbl_31688,asmbl_31691,asmbl_31692,asmbl_31694 scaffold_23 - retained_intron 6289367-6289481 asmbl_31689,asmbl_31690,asmbl_31693 // Retained and Spliced Intron # retained_intron 6289651-6289837 (orient:-) max_ev_support = 2 # spliced_intron 6289651-6289837 (orient:-) max_ev_support = 3 scaffold_23 - intron 6289651-6289837 asmbl_31687,asmbl_31688 scaffold_23 - retained_intron 6289651-6289837 asmbl_31689,asmbl_31690,asmbl_31691,asmbl_31692,asmbl_31693,asmbl_31694 // Retained and Spliced Intron # retained_intron 6854401-6855600 (orient:-) max_ev_support = 2 # spliced_intron 6854401-6855600 (orient:-) max_ev_support = 1 scaffold_23 - intron 6854401-6855600 asmbl_31703,asmbl_31704 scaffold_23 - retained_intron 6854401-6855600 asmbl_31702 // Retained and Spliced Intron # retained_intron 6856586-6856771 (orient:-) max_ev_support = 1 # spliced_intron 6856586-6856771 (orient:-) max_ev_support = 2 scaffold_23 - intron 6856586-6856771 asmbl_31702,asmbl_31703,asmbl_31704 scaffold_23 - retained_intron 6856586-6856771 asmbl_31708 // Exon Skipping and Retention # skipped_exon 6988677-6989115 (orient:-) max_ev_support = 1 # retained_exon 6988881-6988988 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 6988881-6988988 asmbl_31716,asmbl_31717 scaffold_23 - intron_skips_exon 6988677-6989115 asmbl_31718 // Retained and Spliced Intron # retained_intron 7005777-7005932 (orient:-) max_ev_support = 2 # spliced_intron 7005777-7005932 (orient:-) max_ev_support = 1 scaffold_23 - intron 7005777-7005932 asmbl_31724 scaffold_23 - retained_intron 7005777-7005932 asmbl_31726 // Retained and Spliced Intron # retained_intron 7005777-7006309 (orient:-) max_ev_support = 2 # spliced_intron 7005777-7006309 (orient:-) max_ev_support = 2 scaffold_23 - intron 7005777-7006309 asmbl_31727 scaffold_23 - retained_intron 7005777-7006309 asmbl_31726 // Retained and Spliced Intron # retained_intron 7044875-7045050 (orient:-) max_ev_support = 1 # spliced_intron 7044875-7045050 (orient:-) max_ev_support = 2 scaffold_23 - intron 7044875-7045050 asmbl_31731,asmbl_31732 scaffold_23 - retained_intron 7044875-7045050 asmbl_31733 // Retained and Spliced Intron # retained_intron 7045280-7045597 (orient:-) max_ev_support = 1 # spliced_intron 7045280-7045597 (orient:-) max_ev_support = 2 scaffold_23 - intron 7045280-7045597 asmbl_31731,asmbl_31732 scaffold_23 - retained_intron 7045280-7045597 asmbl_31733 // Exon Skipping and Retention # skipped_exon 7277470-7278108 (orient:-) max_ev_support = 1 # retained_exon 7277616-7277667 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7277616-7277667 asmbl_31740,asmbl_31742,asmbl_31744 scaffold_23 - intron_skips_exon 7277470-7278108 asmbl_31743 // Exon Skipping and Retention # skipped_exon 7278968-7279762 (orient:-) max_ev_support = 1 # retained_exon 7279357-7279426 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7279357-7279426 asmbl_31740 scaffold_23 - intron_skips_exon 7278968-7279762 asmbl_31742 // Retained and Spliced Intron # retained_intron 7281701-7281793 (orient:-) max_ev_support = 2 # spliced_intron 7281701-7281793 (orient:-) max_ev_support = 1 scaffold_23 - intron 7281701-7281793 asmbl_31742 scaffold_23 - retained_intron 7281701-7281793 asmbl_31740 // Retained and Spliced Intron # retained_intron 7281701-7281808 (orient:-) max_ev_support = 2 # spliced_intron 7281701-7281808 (orient:-) max_ev_support = 1 scaffold_23 - intron 7281701-7281808 asmbl_31744 scaffold_23 - retained_intron 7281701-7281808 asmbl_31740 // Exon Skipping and Retention # skipped_exon 7278221-7279356 (orient:-) max_ev_support = 2 # retained_exon 7278481-7278967 (orient:-) max_ev_support = 1 scaffold_23 - retained_exons 7278481-7278967 asmbl_31742,asmbl_31744 scaffold_23 - intron_skips_exon 7278221-7279356 asmbl_31740 // Retained and Spliced Intron # retained_intron 7279427-7279762 (orient:-) max_ev_support = 1 # spliced_intron 7279427-7279762 (orient:-) max_ev_support = 2 scaffold_23 - intron 7279427-7279762 asmbl_31740 scaffold_23 - retained_intron 7279427-7279762 asmbl_31744 // Exon Skipping and Retention # skipped_exon 7511956-7514060 (orient:-) max_ev_support = 2 # retained_exon 7512954-7513091 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7512954-7513091 asmbl_31751 scaffold_23 - intron_skips_exon 7511956-7514060 asmbl_31750 // Exon Skipping and Retention # skipped_exon 7631700-7633531 (orient:-) max_ev_support = 2 # retained_exon 7632771-7632815 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7632771-7632815 asmbl_31759 scaffold_23 - intron_skips_exon 7631700-7633531 asmbl_31758 // Exon Skipping and Retention # skipped_exon 7915714-7917467 (orient:-) max_ev_support = 2 # retained_exon 7915793-7916870 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 7915793-7915843,7916688-7916870 asmbl_31774 scaffold_23 - intron_skips_exon 7915714-7917467 asmbl_31775 // Retained and Spliced Intron # retained_intron 7915714-7915792 (orient:-) max_ev_support = 1 # spliced_intron 7915714-7915792 (orient:-) max_ev_support = 2 scaffold_23 - intron 7915714-7915792 asmbl_31774,asmbl_31776 scaffold_23 - retained_intron 7915714-7915792 asmbl_31778 // Retained and Spliced Intron # retained_intron 7938919-7939182 (orient:-) max_ev_support = 3 # spliced_intron 7938919-7939182 (orient:-) max_ev_support = 2 scaffold_23 - intron 7938919-7939182 asmbl_31781 scaffold_23 - retained_intron 7938919-7939182 asmbl_31780 // Exon Skipping and Retention # skipped_exon 7938919-7940270 (orient:-) max_ev_support = 1 # retained_exon 7939183-7940157 (orient:-) max_ev_support = 5 scaffold_23 - retained_exons 7939183-7940157 asmbl_31781 scaffold_23 - intron_skips_exon 7938919-7940270 asmbl_31782 // Exon Skipping and Retention # skipped_exon 8066122-8068406 (orient:-) max_ev_support = 2 # retained_exon 8066624-8066699 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 8066624-8066699 asmbl_31788 scaffold_23 - intron_skips_exon 8066122-8068406 asmbl_31789 // Retained and Spliced Intron # retained_intron 8125986-8126005 (orient:-) max_ev_support = 1 # spliced_intron 8125986-8126005 (orient:-) max_ev_support = 1 scaffold_23 - intron 8125986-8126005 asmbl_31794 scaffold_23 - retained_intron 8125986-8126005 asmbl_31793 // Exon Skipping and Retention # skipped_exon 9117592-9120056 (orient:-) max_ev_support = 1 # retained_exon 9119518-9119574 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 9119518-9119574 asmbl_31807 scaffold_23 - intron_skips_exon 9117592-9120056 asmbl_31808 // Retained and Spliced Intron # retained_intron 9517036-9517096 (orient:-) max_ev_support = 2 # spliced_intron 9517036-9517096 (orient:-) max_ev_support = 1 scaffold_23 - intron 9517036-9517096 asmbl_31817 scaffold_23 - retained_intron 9517036-9517096 asmbl_31816 // Retained and Spliced Intron # retained_intron 9518168-9518194 (orient:-) max_ev_support = 1 # spliced_intron 9518168-9518194 (orient:-) max_ev_support = 1 scaffold_23 - intron 9518168-9518194 asmbl_31819 scaffold_23 - retained_intron 9518168-9518194 asmbl_31820 // Retained and Spliced Intron # retained_intron 9951383-9951465 (orient:-) max_ev_support = 3 # spliced_intron 9951383-9951465 (orient:-) max_ev_support = 2 scaffold_23 - intron 9951383-9951465 asmbl_31829,asmbl_31830,asmbl_31831 scaffold_23 - retained_intron 9951383-9951465 asmbl_31832 // Retained and Spliced Intron # retained_intron 10131332-10131437 (orient:-) max_ev_support = 2 # spliced_intron 10131332-10131437 (orient:-) max_ev_support = 1 scaffold_23 - intron 10131332-10131437 asmbl_31840 scaffold_23 - retained_intron 10131332-10131437 asmbl_31839 // Exon Skipping and Retention # skipped_exon 10323621-10325802 (orient:-) max_ev_support = 2 # retained_exon 10323928-10324071 (orient:-) max_ev_support = 2 scaffold_23 - retained_exons 10323928-10324071 asmbl_31858 scaffold_23 - intron_skips_exon 10323621-10325802 asmbl_31857 // Retained and Spliced Intron # retained_intron 10909931-10909952 (orient:-) max_ev_support = 4 # spliced_intron 10909931-10909952 (orient:-) max_ev_support = 1 scaffold_23 - intron 10909931-10909952 asmbl_31884 scaffold_23 - retained_intron 10909931-10909952 asmbl_31882,asmbl_31883 // Retained and Spliced Intron # retained_intron 10910316-10910432 (orient:-) max_ev_support = 1 # spliced_intron 10910316-10910432 (orient:-) max_ev_support = 1 scaffold_23 - intron 10910316-10910432 asmbl_31882,asmbl_31884 scaffold_23 - retained_intron 10910316-10910432 asmbl_31883 // Retained and Spliced Intron # retained_intron 10938115-10938227 (orient:-) max_ev_support = 1 # spliced_intron 10938115-10938227 (orient:-) max_ev_support = 1 scaffold_23 - intron 10938115-10938227 asmbl_31891 scaffold_23 - retained_intron 10938115-10938227 asmbl_31893 // Retained and Spliced Intron # retained_intron 10938115-10938394 (orient:-) max_ev_support = 1 # spliced_intron 10938115-10938394 (orient:-) max_ev_support = 1 scaffold_23 - intron 10938115-10938394 asmbl_31889,asmbl_31892 scaffold_23 - retained_intron 10938115-10938394 asmbl_31893 // Retained and Spliced Intron # retained_intron 10938169-10938227 (orient:-) max_ev_support = 1 # spliced_intron 10938169-10938227 (orient:-) max_ev_support = 2 scaffold_23 - intron 10938169-10938227 asmbl_31890 scaffold_23 - retained_intron 10938169-10938227 asmbl_31893 // Retained and Spliced Intron # retained_intron 10990900-10990994 (orient:-) max_ev_support = 1 # spliced_intron 10990900-10990994 (orient:-) max_ev_support = 1 scaffold_23 - intron 10990900-10990994 asmbl_31899 scaffold_23 - retained_intron 10990900-10990994 asmbl_31900 // Retained and Spliced Intron # retained_intron 10990921-10990994 (orient:-) max_ev_support = 1 # spliced_intron 10990921-10990994 (orient:-) max_ev_support = 2 scaffold_23 - intron 10990921-10990994 asmbl_31897 scaffold_23 - retained_intron 10990921-10990994 asmbl_31900 // Retained and Spliced Intron # retained_intron 655307-655405 (orient:+) max_ev_support = 2 # spliced_intron 655307-655405 (orient:+) max_ev_support = 2 scaffold_24 + intron 655307-655405 asmbl_32038 scaffold_24 + retained_intron 655307-655405 asmbl_32037 // Retained and Spliced Intron # retained_intron 718962-719078 (orient:+) max_ev_support = 2 # spliced_intron 718962-719078 (orient:+) max_ev_support = 1 scaffold_24 + intron 718962-719078 asmbl_32046,asmbl_32047 scaffold_24 + retained_intron 718962-719078 asmbl_32044,asmbl_32045 // Exon Skipping and Retention # skipped_exon 721142-722300 (orient:+) max_ev_support = 3 # retained_exon 722139-722201 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 722139-722201 asmbl_32049 scaffold_24 + intron_skips_exon 721142-722300 asmbl_32048 // Retained and Spliced Intron # retained_intron 879746-879842 (orient:+) max_ev_support = 2 # spliced_intron 879746-879842 (orient:+) max_ev_support = 1 scaffold_24 + intron 879746-879842 asmbl_32062 scaffold_24 + retained_intron 879746-879842 asmbl_32061 // Retained and Spliced Intron # retained_intron 879811-879831 (orient:+) max_ev_support = 2 # spliced_intron 879811-879831 (orient:+) max_ev_support = 1 scaffold_24 + intron 879811-879831 asmbl_32063 scaffold_24 + retained_intron 879811-879831 asmbl_32061 // Retained and Spliced Intron # retained_intron 1035334-1035594 (orient:+) max_ev_support = 2 # spliced_intron 1035334-1035594 (orient:+) max_ev_support = 2 scaffold_24 + intron 1035334-1035594 asmbl_32068 scaffold_24 + retained_intron 1035334-1035594 asmbl_32070 // Retained and Spliced Intron # retained_intron 1064378-1064557 (orient:+) max_ev_support = 3 # spliced_intron 1064378-1064557 (orient:+) max_ev_support = 1 scaffold_24 + intron 1064378-1064557 asmbl_32074 scaffold_24 + retained_intron 1064378-1064557 asmbl_32071,asmbl_32073 // Retained and Spliced Intron # retained_intron 1064378-1064849 (orient:+) max_ev_support = 5 # spliced_intron 1064378-1064849 (orient:+) max_ev_support = 3 scaffold_24 + intron 1064378-1064849 asmbl_32072 scaffold_24 + retained_intron 1064378-1064849 asmbl_32071 // Retained and Spliced Intron # retained_intron 1064662-1064849 (orient:+) max_ev_support = 5 # spliced_intron 1064662-1064849 (orient:+) max_ev_support = 2 scaffold_24 + intron 1064662-1064849 asmbl_32073,asmbl_32074 scaffold_24 + retained_intron 1064662-1064849 asmbl_32071 // Exon Skipping and Retention # skipped_exon 1064378-1064849 (orient:+) max_ev_support = 3 # retained_exon 1064558-1064661 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 1064558-1064661 asmbl_32074 scaffold_24 + intron_skips_exon 1064378-1064849 asmbl_32072 // Retained and Spliced Intron # retained_intron 1078652-1078823 (orient:+) max_ev_support = 2 # spliced_intron 1078652-1078823 (orient:+) max_ev_support = 2 scaffold_24 + intron 1078652-1078823 asmbl_32077 scaffold_24 + retained_intron 1078652-1078823 asmbl_32075 // Retained and Spliced Intron # retained_intron 1078656-1078823 (orient:+) max_ev_support = 2 # spliced_intron 1078656-1078823 (orient:+) max_ev_support = 2 scaffold_24 + intron 1078656-1078823 asmbl_32076 scaffold_24 + retained_intron 1078656-1078823 asmbl_32075 // Retained and Spliced Intron # retained_intron 1452917-1452990 (orient:+) max_ev_support = 2 # spliced_intron 1452917-1452990 (orient:+) max_ev_support = 1 scaffold_24 + intron 1452917-1452990 asmbl_32087 scaffold_24 + retained_intron 1452917-1452990 asmbl_32086 // Exon Skipping and Retention # skipped_exon 2430315-2431447 (orient:+) max_ev_support = 2 # retained_exon 2430533-2430685 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 2430533-2430685 asmbl_32105 scaffold_24 + intron_skips_exon 2430315-2431447 asmbl_32104 // Retained and Spliced Intron # retained_intron 2514768-2515025 (orient:+) max_ev_support = 2 # spliced_intron 2514768-2515025 (orient:+) max_ev_support = 2 scaffold_24 + intron 2514768-2515025 asmbl_32113 scaffold_24 + retained_intron 2514768-2515025 asmbl_32111 // Retained and Spliced Intron # retained_intron 2514768-2515066 (orient:+) max_ev_support = 2 # spliced_intron 2514768-2515066 (orient:+) max_ev_support = 2 scaffold_24 + intron 2514768-2515066 asmbl_32112,asmbl_32114 scaffold_24 + retained_intron 2514768-2515066 asmbl_32111 // Retained and Spliced Intron # retained_intron 2744728-2744809 (orient:+) max_ev_support = 1 # spliced_intron 2744728-2744809 (orient:+) max_ev_support = 1 scaffold_24 + intron 2744728-2744809 asmbl_32117 scaffold_24 + retained_intron 2744728-2744809 asmbl_32118 // Retained and Spliced Intron # retained_intron 3026292-3026335 (orient:+) max_ev_support = 1 # spliced_intron 3026292-3026335 (orient:+) max_ev_support = 1 scaffold_24 + intron 3026292-3026335 asmbl_32143 scaffold_24 + retained_intron 3026292-3026335 asmbl_32144 // Retained and Spliced Intron # retained_intron 3335564-3335692 (orient:+) max_ev_support = 1 # spliced_intron 3335564-3335692 (orient:+) max_ev_support = 2 scaffold_24 + intron 3335564-3335692 asmbl_32152 scaffold_24 + retained_intron 3335564-3335692 asmbl_32155 // Retained and Spliced Intron # retained_intron 3655845-3656072 (orient:+) max_ev_support = 3 # spliced_intron 3655845-3656072 (orient:+) max_ev_support = 2 scaffold_24 + intron 3655845-3656072 asmbl_32165,asmbl_32168 scaffold_24 + retained_intron 3655845-3656072 asmbl_32162 // Retained and Spliced Intron # retained_intron 3655845-3656569 (orient:+) max_ev_support = 3 # spliced_intron 3655845-3656569 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655845-3656569 asmbl_32164 scaffold_24 + retained_intron 3655845-3656569 asmbl_32162 // Retained and Spliced Intron # retained_intron 3655857-3656074 (orient:+) max_ev_support = 3 # spliced_intron 3655857-3656074 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655857-3656074 asmbl_32163 scaffold_24 + retained_intron 3655857-3656074 asmbl_32162 // Retained and Spliced Intron # retained_intron 3655857-3656169 (orient:+) max_ev_support = 3 # spliced_intron 3655857-3656169 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655857-3656169 asmbl_32161 scaffold_24 + retained_intron 3655857-3656169 asmbl_32162 // Retained and Spliced Intron # retained_intron 3655919-3656169 (orient:+) max_ev_support = 3 # spliced_intron 3655919-3656169 (orient:+) max_ev_support = 2 scaffold_24 + intron 3655919-3656169 asmbl_32166,asmbl_32167 scaffold_24 + retained_intron 3655919-3656169 asmbl_32162 // Retained and Spliced Intron # retained_intron 3655652-3655776 (orient:+) max_ev_support = 1 # spliced_intron 3655652-3655776 (orient:+) max_ev_support = 3 scaffold_24 + intron 3655652-3655776 asmbl_32161,asmbl_32162,asmbl_32163,asmbl_32164,asmbl_32165,asmbl_32166 scaffold_24 + retained_intron 3655652-3655776 asmbl_32168 // Retained and Spliced Intron # retained_intron 3701651-3701884 (orient:+) max_ev_support = 2 # spliced_intron 3701651-3701884 (orient:+) max_ev_support = 3 scaffold_24 + intron 3701651-3701884 asmbl_32171,asmbl_32173 scaffold_24 + retained_intron 3701651-3701884 asmbl_32172 // Retained and Spliced Intron # retained_intron 3700697-3701118 (orient:+) max_ev_support = 1 # spliced_intron 3700697-3701118 (orient:+) max_ev_support = 3 scaffold_24 + intron 3700697-3701118 asmbl_32171 scaffold_24 + retained_intron 3700697-3701118 asmbl_32173 // Exon Skipping and Retention # skipped_exon 4280160-4280658 (orient:+) max_ev_support = 2 # retained_exon 4280562-4280609 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280562-4280609 asmbl_32190 scaffold_24 + intron_skips_exon 4280160-4280658 asmbl_32191 // Exon Skipping and Retention # skipped_exon 4280160-4281253 (orient:+) max_ev_support = 1 # retained_exon 4280562-4281195 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280562-4280609,4281153-4281195 asmbl_32190 scaffold_24 + intron_skips_exon 4280160-4280658 asmbl_32192 scaffold_24 + intron_skips_exon 4280796-4281253 asmbl_32192 // Exon Skipping and Retention # skipped_exon 4280610-4281152 (orient:+) max_ev_support = 2 # retained_exon 4280659-4280795 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4280659-4280795 asmbl_32191,asmbl_32192 scaffold_24 + intron_skips_exon 4280610-4281152 asmbl_32190 // Exon Skipping and Retention # skipped_exon 4280796-4281253 (orient:+) max_ev_support = 1 # retained_exon 4281153-4281195 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 4281153-4281195 asmbl_32191 scaffold_24 + intron_skips_exon 4280796-4281253 asmbl_32192 // Retained and Spliced Intron # retained_intron 4294010-4294192 (orient:+) max_ev_support = 1 # spliced_intron 4294010-4294192 (orient:+) max_ev_support = 2 scaffold_24 + intron 4294010-4294192 asmbl_32193 scaffold_24 + retained_intron 4294010-4294192 asmbl_32195 // Exon Skipping and Retention # skipped_exon 4319025-4319782 (orient:+) max_ev_support = 1 # retained_exon 4319607-4319675 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 4319607-4319675 asmbl_32200 scaffold_24 + intron_skips_exon 4319025-4319782 asmbl_32201 // Exon Skipping and Retention # skipped_exon 4318881-4319606 (orient:+) max_ev_support = 1 # retained_exon 4318956-4319024 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 4318956-4319024 asmbl_32201 scaffold_24 + intron_skips_exon 4318881-4319606 asmbl_32200 // Retained and Spliced Intron # retained_intron 4328698-4328844 (orient:+) max_ev_support = 1 # spliced_intron 4328698-4328844 (orient:+) max_ev_support = 1 scaffold_24 + intron 4328698-4328844 asmbl_32204,asmbl_32205 scaffold_24 + retained_intron 4328698-4328844 asmbl_32206 // Exon Skipping and Retention # skipped_exon 4375751-4376931 (orient:+) max_ev_support = 1 # retained_exon 4375882-4376765 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 4375882-4375969,4376626-4376765 asmbl_32210 scaffold_24 + intron_skips_exon 4375751-4376931 asmbl_32212 // Exon Skipping and Retention # skipped_exon 5383776-5385309 (orient:+) max_ev_support = 2 # retained_exon 5384277-5384350 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 5384277-5384350 asmbl_32225 scaffold_24 + intron_skips_exon 5383776-5385309 asmbl_32224 // Retained and Spliced Intron # retained_intron 5948199-5949651 (orient:+) max_ev_support = 2 # spliced_intron 5948199-5949651 (orient:+) max_ev_support = 1 scaffold_24 + intron 5948199-5949651 asmbl_32262,asmbl_32270,asmbl_32271,asmbl_32272,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282 scaffold_24 + retained_intron 5948199-5949651 asmbl_32263 // Retained and Spliced Intron # retained_intron 5939387-5939564 (orient:+) max_ev_support = 2 # spliced_intron 5939387-5939564 (orient:+) max_ev_support = 1 scaffold_24 + intron 5939387-5939564 asmbl_32262,asmbl_32270,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282,asmbl_32283 scaffold_24 + retained_intron 5939387-5939564 asmbl_32267,asmbl_32276 // Retained and Spliced Intron # retained_intron 5951108-5951617 (orient:+) max_ev_support = 1 # spliced_intron 5951108-5951617 (orient:+) max_ev_support = 1 scaffold_24 + intron 5951108-5951617 asmbl_32262,asmbl_32272,asmbl_32279,asmbl_32280 scaffold_24 + retained_intron 5951108-5951617 asmbl_32270 // Retained and Spliced Intron # retained_intron 5949822-5950116 (orient:+) max_ev_support = 1 # spliced_intron 5949822-5950116 (orient:+) max_ev_support = 1 scaffold_24 + intron 5949822-5950116 asmbl_32282 scaffold_24 + retained_intron 5949822-5950116 asmbl_32271,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32281 // Retained and Spliced Intron # retained_intron 5945203-5947592 (orient:+) max_ev_support = 1 # spliced_intron 5945203-5947592 (orient:+) max_ev_support = 1 scaffold_24 + intron 5945203-5947592 asmbl_32262,asmbl_32270,asmbl_32274,asmbl_32275,asmbl_32276,asmbl_32278,asmbl_32279,asmbl_32280,asmbl_32281,asmbl_32282 scaffold_24 + retained_intron 5945203-5947592 asmbl_32283 // Exon Skipping and Retention # skipped_exon 6290670-6292064 (orient:+) max_ev_support = 2 # retained_exon 6291224-6291262 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 6291224-6291262 asmbl_32305 scaffold_24 + intron_skips_exon 6290670-6292064 asmbl_32304 // Retained and Spliced Intron # retained_intron 6297525-6297691 (orient:+) max_ev_support = 3 # spliced_intron 6297525-6297691 (orient:+) max_ev_support = 3 scaffold_24 + intron 6297525-6297691 asmbl_32307 scaffold_24 + retained_intron 6297525-6297691 asmbl_32306 // Retained and Spliced Intron # retained_intron 6297543-6297691 (orient:+) max_ev_support = 3 # spliced_intron 6297543-6297691 (orient:+) max_ev_support = 3 scaffold_24 + intron 6297543-6297691 asmbl_32308 scaffold_24 + retained_intron 6297543-6297691 asmbl_32306 // Retained and Spliced Intron # retained_intron 6307469-6307627 (orient:+) max_ev_support = 2 # spliced_intron 6307469-6307627 (orient:+) max_ev_support = 1 scaffold_24 + intron 6307469-6307627 asmbl_32311 scaffold_24 + retained_intron 6307469-6307627 asmbl_32309,asmbl_32310,asmbl_32313 // Retained and Spliced Intron # retained_intron 6311156-6311448 (orient:+) max_ev_support = 2 # spliced_intron 6311156-6311448 (orient:+) max_ev_support = 2 scaffold_24 + intron 6311156-6311448 asmbl_32309,asmbl_32310,asmbl_32311,asmbl_32313 scaffold_24 + retained_intron 6311156-6311448 asmbl_32312 // Retained and Spliced Intron # retained_intron 6310450-6310978 (orient:+) max_ev_support = 1 # spliced_intron 6310450-6310978 (orient:+) max_ev_support = 2 scaffold_24 + intron 6310450-6310978 asmbl_32309,asmbl_32310,asmbl_32311 scaffold_24 + retained_intron 6310450-6310978 asmbl_32313 // Exon Skipping and Retention # skipped_exon 6831669-6833623 (orient:+) max_ev_support = 1 # retained_exon 6832782-6832859 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 6832782-6832859 asmbl_32352,asmbl_32354,asmbl_32356,asmbl_32359 scaffold_24 + intron_skips_exon 6831669-6833623 asmbl_32358 // Retained and Spliced Intron # retained_intron 6833657-6834175 (orient:+) max_ev_support = 3 # spliced_intron 6833657-6834175 (orient:+) max_ev_support = 2 scaffold_24 + intron 6833657-6834175 asmbl_32354,asmbl_32358 scaffold_24 + retained_intron 6833657-6834175 asmbl_32352 // Exon Skipping and Retention # skipped_exon 6832860-6834175 (orient:+) max_ev_support = 2 # retained_exon 6833624-6833656 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 6833624-6833656 asmbl_32354,asmbl_32358 scaffold_24 + intron_skips_exon 6832860-6834175 asmbl_32356,asmbl_32359 // Retained and Spliced Intron # retained_intron 6834417-6834757 (orient:+) max_ev_support = 1 # spliced_intron 6834417-6834757 (orient:+) max_ev_support = 2 scaffold_24 + intron 6834417-6834757 asmbl_32354,asmbl_32356,asmbl_32358 scaffold_24 + retained_intron 6834417-6834757 asmbl_32359 // Exon Skipping and Retention # skipped_exon 7099268-7100129 (orient:+) max_ev_support = 1 # retained_exon 7099438-7099912 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 7099438-7099549,7099813-7099912 asmbl_32373 scaffold_24 + intron_skips_exon 7099268-7100129 asmbl_32374 // Retained and Spliced Intron # retained_intron 7167433-7167861 (orient:+) max_ev_support = 6 # spliced_intron 7167433-7167861 (orient:+) max_ev_support = 1 scaffold_24 + intron 7167433-7167861 asmbl_32381 scaffold_24 + retained_intron 7167433-7167861 asmbl_32379,asmbl_32380 // Exon Skipping and Retention # skipped_exon 7201058-7202218 (orient:+) max_ev_support = 1 # retained_exon 7201371-7201439 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 7201371-7201439 asmbl_32384 scaffold_24 + intron_skips_exon 7201058-7202218 asmbl_32383 // Retained and Spliced Intron # retained_intron 8747030-8747465 (orient:+) max_ev_support = 3 # spliced_intron 8747030-8747465 (orient:+) max_ev_support = 3 scaffold_24 + intron 8747030-8747465 asmbl_32446 scaffold_24 + retained_intron 8747030-8747465 asmbl_32447 // Retained and Spliced Intron # retained_intron 8747124-8747465 (orient:+) max_ev_support = 3 # spliced_intron 8747124-8747465 (orient:+) max_ev_support = 1 scaffold_24 + intron 8747124-8747465 asmbl_32449 scaffold_24 + retained_intron 8747124-8747465 asmbl_32447 // Retained and Spliced Intron # retained_intron 8954743-8954815 (orient:+) max_ev_support = 2 # spliced_intron 8954743-8954815 (orient:+) max_ev_support = 3 scaffold_24 + intron 8954743-8954815 asmbl_32466 scaffold_24 + retained_intron 8954743-8954815 asmbl_32467,asmbl_32468 // Retained and Spliced Intron # retained_intron 8992308-8992351 (orient:+) max_ev_support = 3 # spliced_intron 8992308-8992351 (orient:+) max_ev_support = 1 scaffold_24 + intron 8992308-8992351 asmbl_32481 scaffold_24 + retained_intron 8992308-8992351 asmbl_32480 // Retained and Spliced Intron # retained_intron 9064471-9064576 (orient:+) max_ev_support = 2 # spliced_intron 9064471-9064576 (orient:+) max_ev_support = 2 scaffold_24 + intron 9064471-9064576 asmbl_32490 scaffold_24 + retained_intron 9064471-9064576 asmbl_32491 // Exon Skipping and Retention # skipped_exon 9080067-9082772 (orient:+) max_ev_support = 3 # retained_exon 9082287-9082385 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 9082287-9082385 asmbl_32499,asmbl_32502,asmbl_32503 scaffold_24 + intron_skips_exon 9080067-9082772 asmbl_32494,asmbl_32495,asmbl_32497 // Exon Skipping and Retention # skipped_exon 9073530-9076142 (orient:+) max_ev_support = 3 # retained_exon 9074801-9074842 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 9074801-9074842 asmbl_32502 scaffold_24 + intron_skips_exon 9073530-9076142 asmbl_32494,asmbl_32495,asmbl_32499,asmbl_32501 // Exon Skipping and Retention # skipped_exon 9119018-9119908 (orient:+) max_ev_support = 2 # retained_exon 9119237-9119809 (orient:+) max_ev_support = 3 scaffold_24 + retained_exons 9119237-9119809 asmbl_32510 scaffold_24 + intron_skips_exon 9119018-9119908 asmbl_32512,asmbl_32513,asmbl_32514,asmbl_32515,asmbl_32516 // Retained and Spliced Intron # retained_intron 9119810-9119908 (orient:+) max_ev_support = 2 # spliced_intron 9119810-9119908 (orient:+) max_ev_support = 2 scaffold_24 + intron 9119810-9119908 asmbl_32510 scaffold_24 + retained_intron 9119810-9119908 asmbl_32511 // Retained and Spliced Intron # retained_intron 9120008-9120346 (orient:+) max_ev_support = 2 # spliced_intron 9120008-9120346 (orient:+) max_ev_support = 2 scaffold_24 + intron 9120008-9120346 asmbl_32512,asmbl_32514,asmbl_32516 scaffold_24 + retained_intron 9120008-9120346 asmbl_32511,asmbl_32513,asmbl_32515 // Retained and Spliced Intron # retained_intron 9116511-9116764 (orient:+) max_ev_support = 1 # spliced_intron 9116511-9116764 (orient:+) max_ev_support = 2 scaffold_24 + intron 9116511-9116764 asmbl_32512,asmbl_32513 scaffold_24 + retained_intron 9116511-9116764 asmbl_32514,asmbl_32515,asmbl_32516 // Retained and Spliced Intron # retained_intron 9117195-9117393 (orient:+) max_ev_support = 1 # spliced_intron 9117195-9117393 (orient:+) max_ev_support = 2 scaffold_24 + intron 9117195-9117393 asmbl_32512,asmbl_32513,asmbl_32516 scaffold_24 + retained_intron 9117195-9117393 asmbl_32514,asmbl_32515 // Retained and Spliced Intron # retained_intron 9121547-9121613 (orient:+) max_ev_support = 2 # spliced_intron 9121547-9121613 (orient:+) max_ev_support = 1 scaffold_24 + intron 9121547-9121613 asmbl_32519 scaffold_24 + retained_intron 9121547-9121613 asmbl_32518 // Retained and Spliced Intron # retained_intron 9121547-9121853 (orient:+) max_ev_support = 2 # spliced_intron 9121547-9121853 (orient:+) max_ev_support = 3 scaffold_24 + intron 9121547-9121853 asmbl_32517 scaffold_24 + retained_intron 9121547-9121853 asmbl_32518 // Retained and Spliced Intron # retained_intron 9121693-9121853 (orient:+) max_ev_support = 2 # spliced_intron 9121693-9121853 (orient:+) max_ev_support = 1 scaffold_24 + intron 9121693-9121853 asmbl_32520 scaffold_24 + retained_intron 9121693-9121853 asmbl_32518,asmbl_32519 // Retained and Spliced Intron # retained_intron 9128917-9129415 (orient:+) max_ev_support = 2 # spliced_intron 9128917-9129415 (orient:+) max_ev_support = 2 scaffold_24 + intron 9128917-9129415 asmbl_32522 scaffold_24 + retained_intron 9128917-9129415 asmbl_32521 // Retained and Spliced Intron # retained_intron 9934311-9934385 (orient:+) max_ev_support = 1 # spliced_intron 9934311-9934385 (orient:+) max_ev_support = 2 scaffold_24 + intron 9934311-9934385 asmbl_32538 scaffold_24 + retained_intron 9934311-9934385 asmbl_32539 // Exon Skipping and Retention # skipped_exon 10132037-10134152 (orient:+) max_ev_support = 1 # retained_exon 10133801-10133933 (orient:+) max_ev_support = 2 scaffold_24 + retained_exons 10133801-10133933 asmbl_32544 scaffold_24 + intron_skips_exon 10132037-10134152 asmbl_32545 // Exon Skipping and Retention # skipped_exon 10130846-10133800 (orient:+) max_ev_support = 2 # retained_exon 10131904-10132036 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 10131904-10132036 asmbl_32545 scaffold_24 + intron_skips_exon 10130846-10133800 asmbl_32544 // Retained and Spliced Intron # retained_intron 10422912-10423124 (orient:+) max_ev_support = 2 # spliced_intron 10422912-10423124 (orient:+) max_ev_support = 2 scaffold_24 + intron 10422912-10423124 asmbl_32560 scaffold_24 + retained_intron 10422912-10423124 asmbl_32561 // Retained and Spliced Intron # retained_intron 10423260-10423576 (orient:+) max_ev_support = 2 # spliced_intron 10423260-10423576 (orient:+) max_ev_support = 2 scaffold_24 + intron 10423260-10423576 asmbl_32560 scaffold_24 + retained_intron 10423260-10423576 asmbl_32561 // Retained and Spliced Intron # retained_intron 10479687-10479716 (orient:+) max_ev_support = 2 # spliced_intron 10479687-10479716 (orient:+) max_ev_support = 1 scaffold_24 + intron 10479687-10479716 asmbl_32569,asmbl_32570 scaffold_24 + retained_intron 10479687-10479716 asmbl_32564,asmbl_32568 // Retained and Spliced Intron # retained_intron 10480275-10480714 (orient:+) max_ev_support = 1 # spliced_intron 10480275-10480714 (orient:+) max_ev_support = 2 scaffold_24 + intron 10480275-10480714 asmbl_32564,asmbl_32567,asmbl_32569 scaffold_24 + retained_intron 10480275-10480714 asmbl_32568 // Exon Skipping and Retention # skipped_exon 10479702-10479840 (orient:+) max_ev_support = 1 # retained_exon 10479717-10479731 (orient:+) max_ev_support = 1 scaffold_24 + retained_exons 10479717-10479731 asmbl_32569,asmbl_32570 scaffold_24 + intron_skips_exon 10479702-10479840 asmbl_32567 // Retained and Spliced Intron # retained_intron 10604358-10604689 (orient:+) max_ev_support = 2 # spliced_intron 10604358-10604689 (orient:+) max_ev_support = 2 scaffold_24 + intron 10604358-10604689 asmbl_32581,asmbl_32583,asmbl_32584 scaffold_24 + retained_intron 10604358-10604689 asmbl_32582 // Retained and Spliced Intron # retained_intron 10605221-10605501 (orient:+) max_ev_support = 1 # spliced_intron 10605221-10605501 (orient:+) max_ev_support = 2 scaffold_24 + intron 10605221-10605501 asmbl_32581,asmbl_32582,asmbl_32584 scaffold_24 + retained_intron 10605221-10605501 asmbl_32585 // Retained and Spliced Intron # retained_intron 10605221-10605541 (orient:+) max_ev_support = 1 # spliced_intron 10605221-10605541 (orient:+) max_ev_support = 1 scaffold_24 + intron 10605221-10605541 asmbl_32583 scaffold_24 + retained_intron 10605221-10605541 asmbl_32585 // Exon Skipping and Retention # skipped_exon 33655-34681 (orient:-) max_ev_support = 1 # retained_exon 33735-33864 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 33735-33864 asmbl_32680 scaffold_24 - intron_skips_exon 33655-34681 asmbl_32681 // Retained and Spliced Intron # retained_intron 162380-162721 (orient:-) max_ev_support = 3 # spliced_intron 162380-162721 (orient:-) max_ev_support = 2 scaffold_24 - intron 162380-162721 asmbl_32692 scaffold_24 - retained_intron 162380-162721 asmbl_32693 // Retained and Spliced Intron # retained_intron 727022-727258 (orient:-) max_ev_support = 1 # spliced_intron 727022-727258 (orient:-) max_ev_support = 2 scaffold_24 - intron 727022-727258 asmbl_32698,asmbl_32700 scaffold_24 - retained_intron 727022-727258 asmbl_32699 // Retained and Spliced Intron # retained_intron 1939606-1939723 (orient:-) max_ev_support = 2 # spliced_intron 1939606-1939723 (orient:-) max_ev_support = 2 scaffold_24 - intron 1939606-1939723 asmbl_32741 scaffold_24 - retained_intron 1939606-1939723 asmbl_32740 // Retained and Spliced Intron # retained_intron 1945924-1946132 (orient:-) max_ev_support = 1 # spliced_intron 1945924-1946132 (orient:-) max_ev_support = 1 scaffold_24 - intron 1945924-1946132 asmbl_32744,asmbl_32745 scaffold_24 - retained_intron 1945924-1946132 asmbl_32746 // Retained and Spliced Intron # retained_intron 1945924-1946155 (orient:-) max_ev_support = 1 # spliced_intron 1945924-1946155 (orient:-) max_ev_support = 1 scaffold_24 - intron 1945924-1946155 asmbl_32743 scaffold_24 - retained_intron 1945924-1946155 asmbl_32746 // Retained and Spliced Intron # retained_intron 2065131-2065376 (orient:-) max_ev_support = 3 # spliced_intron 2065131-2065376 (orient:-) max_ev_support = 1 scaffold_24 - intron 2065131-2065376 asmbl_32761 scaffold_24 - retained_intron 2065131-2065376 asmbl_32760 // Retained and Spliced Intron # retained_intron 2462777-2462837 (orient:-) max_ev_support = 2 # spliced_intron 2462777-2462837 (orient:-) max_ev_support = 1 scaffold_24 - intron 2462777-2462837 asmbl_32777 scaffold_24 - retained_intron 2462777-2462837 asmbl_32776 // Exon Skipping and Retention # skipped_exon 2519404-2521130 (orient:-) max_ev_support = 1 # retained_exon 2520807-2520854 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 2520807-2520854 asmbl_32782 scaffold_24 - intron_skips_exon 2519404-2521130 asmbl_32783 // Retained and Spliced Intron # retained_intron 2787231-2787394 (orient:-) max_ev_support = 3 # spliced_intron 2787231-2787394 (orient:-) max_ev_support = 2 scaffold_24 - intron 2787231-2787394 asmbl_32792 scaffold_24 - retained_intron 2787231-2787394 asmbl_32791 // Exon Skipping and Retention # skipped_exon 2979214-2981583 (orient:-) max_ev_support = 2 # retained_exon 2980353-2980510 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 2980353-2980510 asmbl_32799 scaffold_24 - intron_skips_exon 2979214-2981583 asmbl_32800 // Retained and Spliced Intron # retained_intron 3328681-3328826 (orient:-) max_ev_support = 1 # spliced_intron 3328681-3328826 (orient:-) max_ev_support = 2 scaffold_24 - intron 3328681-3328826 asmbl_32804 scaffold_24 - retained_intron 3328681-3328826 asmbl_32805 // Retained and Spliced Intron # retained_intron 3763914-3764002 (orient:-) max_ev_support = 2 # spliced_intron 3763914-3764002 (orient:-) max_ev_support = 3 scaffold_24 - intron 3763914-3764002 asmbl_32837 scaffold_24 - retained_intron 3763914-3764002 asmbl_32838 // Exon Skipping and Retention # skipped_exon 4284868-4285198 (orient:-) max_ev_support = 2 # retained_exon 4284977-4285033 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 4284977-4285033 asmbl_32855 scaffold_24 - intron_skips_exon 4284868-4285198 asmbl_32854 // Retained and Spliced Intron # retained_intron 5244901-5245095 (orient:-) max_ev_support = 1 # spliced_intron 5244901-5245095 (orient:-) max_ev_support = 2 scaffold_24 - intron 5244901-5245095 asmbl_32871 scaffold_24 - retained_intron 5244901-5245095 asmbl_32872 // Exon Skipping and Retention # skipped_exon 5290101-5290660 (orient:-) max_ev_support = 1 # retained_exon 5290242-5290375 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 5290242-5290375 asmbl_32873 scaffold_24 - intron_skips_exon 5290101-5290660 asmbl_32874 // Retained and Spliced Intron # retained_intron 5881520-5881765 (orient:-) max_ev_support = 2 # spliced_intron 5881520-5881765 (orient:-) max_ev_support = 3 scaffold_24 - intron 5881520-5881765 asmbl_32895,asmbl_32896 scaffold_24 - retained_intron 5881520-5881765 asmbl_32897,asmbl_32898,asmbl_32899,asmbl_32900 // Retained and Spliced Intron # retained_intron 5882035-5882303 (orient:-) max_ev_support = 2 # spliced_intron 5882035-5882303 (orient:-) max_ev_support = 3 scaffold_24 - intron 5882035-5882303 asmbl_32895,asmbl_32896,asmbl_32898,asmbl_32899 scaffold_24 - retained_intron 5882035-5882303 asmbl_32897,asmbl_32900 // Retained and Spliced Intron # retained_intron 6223797-6223880 (orient:-) max_ev_support = 2 # spliced_intron 6223797-6223880 (orient:-) max_ev_support = 2 scaffold_24 - intron 6223797-6223880 asmbl_32933,asmbl_32937,asmbl_32939,asmbl_32940 scaffold_24 - retained_intron 6223797-6223880 asmbl_32928,asmbl_32929,asmbl_32932,asmbl_32938 // Retained and Spliced Intron # retained_intron 6223967-6224182 (orient:-) max_ev_support = 3 # spliced_intron 6223967-6224182 (orient:-) max_ev_support = 2 scaffold_24 - intron 6223967-6224182 asmbl_32933,asmbl_32937,asmbl_32938,asmbl_32939,asmbl_32940 scaffold_24 - retained_intron 6223967-6224182 asmbl_32928,asmbl_32929,asmbl_32932 // Retained and Spliced Intron # retained_intron 6225543-6225855 (orient:-) max_ev_support = 1 # spliced_intron 6225543-6225855 (orient:-) max_ev_support = 2 scaffold_24 - intron 6225543-6225855 asmbl_32930,asmbl_32933,asmbl_32934 scaffold_24 - retained_intron 6225543-6225855 asmbl_32929,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940 // Retained and Spliced Intron # retained_intron 6225543-6226490 (orient:-) max_ev_support = 1 # spliced_intron 6225543-6226490 (orient:-) max_ev_support = 2 scaffold_24 - intron 6225543-6226490 asmbl_32935 scaffold_24 - retained_intron 6225543-6226490 asmbl_32929,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940 // Retained and Spliced Intron # retained_intron 6225905-6226490 (orient:-) max_ev_support = 1 # spliced_intron 6225905-6226490 (orient:-) max_ev_support = 2 scaffold_24 - intron 6225905-6226490 asmbl_32933,asmbl_32934 scaffold_24 - retained_intron 6225905-6226490 asmbl_32929,asmbl_32930,asmbl_32931,asmbl_32932,asmbl_32937,asmbl_32938,asmbl_32940 // Exon Skipping and Retention # skipped_exon 6225543-6226490 (orient:-) max_ev_support = 2 # retained_exon 6225856-6225904 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6225856-6225904 asmbl_32933,asmbl_32934 scaffold_24 - intron_skips_exon 6225543-6226490 asmbl_32935 // Exon Skipping and Retention # skipped_exon 6432023-6432478 (orient:-) max_ev_support = 1 # retained_exon 6432211-6432264 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6432211-6432264 asmbl_32947 scaffold_24 - intron_skips_exon 6432023-6432478 asmbl_32948 // Retained and Spliced Intron # retained_intron 6432023-6432210 (orient:-) max_ev_support = 1 # spliced_intron 6432023-6432210 (orient:-) max_ev_support = 2 scaffold_24 - intron 6432023-6432210 asmbl_32947 scaffold_24 - retained_intron 6432023-6432210 asmbl_32949 // Retained and Spliced Intron # retained_intron 6432023-6432478 (orient:-) max_ev_support = 1 # spliced_intron 6432023-6432478 (orient:-) max_ev_support = 1 scaffold_24 - intron 6432023-6432478 asmbl_32948 scaffold_24 - retained_intron 6432023-6432478 asmbl_32949 // Retained and Spliced Intron # retained_intron 6432265-6432478 (orient:-) max_ev_support = 1 # spliced_intron 6432265-6432478 (orient:-) max_ev_support = 2 scaffold_24 - intron 6432265-6432478 asmbl_32947 scaffold_24 - retained_intron 6432265-6432478 asmbl_32949 // Exon Skipping and Retention # skipped_exon 6726453-6728217 (orient:-) max_ev_support = 2 # retained_exon 6727435-6727650 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6727435-6727650 asmbl_32955,asmbl_32959,asmbl_32960 scaffold_24 - intron_skips_exon 6726453-6728217 asmbl_32956 // Exon Skipping and Retention # skipped_exon 6783805-6785132 (orient:-) max_ev_support = 1 # retained_exon 6784705-6784803 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 6784705-6784803 asmbl_32962,asmbl_32963 scaffold_24 - intron_skips_exon 6783805-6785132 asmbl_32964 // Exon Skipping and Retention # skipped_exon 6784331-6785132 (orient:-) max_ev_support = 1 # retained_exon 6784705-6784803 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 6784705-6784803 asmbl_32962,asmbl_32963 scaffold_24 - intron_skips_exon 6784331-6785132 asmbl_32965 // Exon Skipping and Retention # skipped_exon 6783805-6784704 (orient:-) max_ev_support = 1 # retained_exon 6784292-6784330 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 6784292-6784330 asmbl_32963,asmbl_32965 scaffold_24 - intron_skips_exon 6783805-6784704 asmbl_32962 // Exon Skipping and Retention # skipped_exon 6846851-6848069 (orient:-) max_ev_support = 2 # retained_exon 6847764-6847781 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 6847764-6847781 asmbl_32979 scaffold_24 - intron_skips_exon 6846851-6848069 asmbl_32980 // Retained and Spliced Intron # retained_intron 7175760-7176154 (orient:-) max_ev_support = 1 # spliced_intron 7175760-7176154 (orient:-) max_ev_support = 1 scaffold_24 - intron 7175760-7176154 asmbl_33005 scaffold_24 - retained_intron 7175760-7176154 asmbl_33004 // Retained and Spliced Intron # retained_intron 7173191-7173356 (orient:-) max_ev_support = 1 # spliced_intron 7173191-7173356 (orient:-) max_ev_support = 1 scaffold_24 - intron 7173191-7173356 asmbl_33004,asmbl_33005,asmbl_33006 scaffold_24 - retained_intron 7173191-7173356 asmbl_33007 // Retained and Spliced Intron # retained_intron 7721535-7721612 (orient:-) max_ev_support = 1 # spliced_intron 7721535-7721612 (orient:-) max_ev_support = 2 scaffold_24 - intron 7721535-7721612 asmbl_33039 scaffold_24 - retained_intron 7721535-7721612 asmbl_33040 // Exon Skipping and Retention # skipped_exon 7733066-7734328 (orient:-) max_ev_support = 1 # retained_exon 7734049-7734093 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 7734049-7734093 asmbl_33043,asmbl_33045 scaffold_24 - intron_skips_exon 7733066-7734328 asmbl_33044 // Retained and Spliced Intron # retained_intron 7786686-7786927 (orient:-) max_ev_support = 1 # spliced_intron 7786686-7786927 (orient:-) max_ev_support = 1 scaffold_24 - intron 7786686-7786927 asmbl_33051 scaffold_24 - retained_intron 7786686-7786927 asmbl_33050 // Retained and Spliced Intron # retained_intron 7784554-7784674 (orient:-) max_ev_support = 1 # spliced_intron 7784554-7784674 (orient:-) max_ev_support = 1 scaffold_24 - intron 7784554-7784674 asmbl_33050,asmbl_33051 scaffold_24 - retained_intron 7784554-7784674 asmbl_33052 // Retained and Spliced Intron # retained_intron 7864239-7864324 (orient:-) max_ev_support = 2 # spliced_intron 7864239-7864324 (orient:-) max_ev_support = 1 scaffold_24 - intron 7864239-7864324 asmbl_33064 scaffold_24 - retained_intron 7864239-7864324 asmbl_33062 // Retained and Spliced Intron # retained_intron 7864239-7864383 (orient:-) max_ev_support = 2 # spliced_intron 7864239-7864383 (orient:-) max_ev_support = 2 scaffold_24 - intron 7864239-7864383 asmbl_33063 scaffold_24 - retained_intron 7864239-7864383 asmbl_33062 // Retained and Spliced Intron # retained_intron 8711438-8711587 (orient:-) max_ev_support = 1 # spliced_intron 8711438-8711587 (orient:-) max_ev_support = 2 scaffold_24 - intron 8711438-8711587 asmbl_33078 scaffold_24 - retained_intron 8711438-8711587 asmbl_33079 // Retained and Spliced Intron # retained_intron 8736275-8736426 (orient:-) max_ev_support = 1 # spliced_intron 8736275-8736426 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736275-8736426 asmbl_33085,asmbl_33088,asmbl_33089 scaffold_24 - retained_intron 8736275-8736426 asmbl_33087,asmbl_33090 // Retained and Spliced Intron # retained_intron 8736585-8736696 (orient:-) max_ev_support = 1 # spliced_intron 8736585-8736696 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736585-8736696 asmbl_33085,asmbl_33088,asmbl_33089 scaffold_24 - retained_intron 8736585-8736696 asmbl_33087,asmbl_33090 // Retained and Spliced Intron # retained_intron 8736860-8737041 (orient:-) max_ev_support = 1 # spliced_intron 8736860-8737041 (orient:-) max_ev_support = 2 scaffold_24 - intron 8736860-8737041 asmbl_33085,asmbl_33088,asmbl_33089 scaffold_24 - retained_intron 8736860-8737041 asmbl_33087,asmbl_33090 // Retained and Spliced Intron # retained_intron 8737754-8737865 (orient:-) max_ev_support = 1 # spliced_intron 8737754-8737865 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737754-8737865 asmbl_33085,asmbl_33087,asmbl_33090,asmbl_33091 scaffold_24 - retained_intron 8737754-8737865 asmbl_33088 // Retained and Spliced Intron # retained_intron 8737299-8737413 (orient:-) max_ev_support = 1 # spliced_intron 8737299-8737413 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737299-8737413 asmbl_33085,asmbl_33087,asmbl_33088,asmbl_33091 scaffold_24 - retained_intron 8737299-8737413 asmbl_33089,asmbl_33090 // Retained and Spliced Intron # retained_intron 8737517-8737605 (orient:-) max_ev_support = 1 # spliced_intron 8737517-8737605 (orient:-) max_ev_support = 2 scaffold_24 - intron 8737517-8737605 asmbl_33085,asmbl_33087,asmbl_33088 scaffold_24 - retained_intron 8737517-8737605 asmbl_33090,asmbl_33091 // Retained and Spliced Intron # retained_intron 8749383-8749460 (orient:-) max_ev_support = 1 # spliced_intron 8749383-8749460 (orient:-) max_ev_support = 1 scaffold_24 - intron 8749383-8749460 asmbl_33095 scaffold_24 - retained_intron 8749383-8749460 asmbl_33093,asmbl_33094,asmbl_33096,asmbl_33097 // Retained and Spliced Intron # retained_intron 8750513-8750667 (orient:-) max_ev_support = 2 # spliced_intron 8750513-8750667 (orient:-) max_ev_support = 2 scaffold_24 - intron 8750513-8750667 asmbl_33094 scaffold_24 - retained_intron 8750513-8750667 asmbl_33093,asmbl_33096,asmbl_33097 // Retained and Spliced Intron # retained_intron 8950507-8950872 (orient:-) max_ev_support = 2 # spliced_intron 8950507-8950872 (orient:-) max_ev_support = 2 scaffold_24 - intron 8950507-8950872 asmbl_33117 scaffold_24 - retained_intron 8950507-8950872 asmbl_33116 // Retained and Spliced Intron # retained_intron 9096592-9096710 (orient:-) max_ev_support = 1 # spliced_intron 9096592-9096710 (orient:-) max_ev_support = 2 scaffold_24 - intron 9096592-9096710 asmbl_33121 scaffold_24 - retained_intron 9096592-9096710 asmbl_33122 // Exon Skipping and Retention # skipped_exon 9592148-9592961 (orient:-) max_ev_support = 1 # retained_exon 9592748-9592808 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9592748-9592808 asmbl_33128 scaffold_24 - intron_skips_exon 9592148-9592961 asmbl_33130 // Exon Skipping and Retention # skipped_exon 9592399-9593170 (orient:-) max_ev_support = 1 # retained_exon 9592748-9593059 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9592748-9592808,9592962-9593059 asmbl_33128 scaffold_24 - intron_skips_exon 9592399-9593170 asmbl_33129 // Exon Skipping and Retention # skipped_exon 9591552-9592747 (orient:-) max_ev_support = 2 # retained_exon 9592087-9592398 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 9592087-9592147,9592301-9592398 asmbl_33129 scaffold_24 - intron_skips_exon 9591552-9592747 asmbl_33128 // Exon Skipping and Retention # skipped_exon 9937385-9938269 (orient:-) max_ev_support = 1 # retained_exon 9937796-9937873 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 9937796-9937873 asmbl_33143 scaffold_24 - intron_skips_exon 9937385-9938269 asmbl_33144 // Exon Skipping and Retention # skipped_exon 9953645-9954584 (orient:-) max_ev_support = 1 # retained_exon 9954372-9954494 (orient:-) max_ev_support = 2 scaffold_24 - retained_exons 9954372-9954494 asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33151,asmbl_33154 scaffold_24 - intron_skips_exon 9953645-9954584 asmbl_33152,asmbl_33153 // Retained and Spliced Intron # retained_intron 9952112-9952301 (orient:-) max_ev_support = 1 # spliced_intron 9952112-9952301 (orient:-) max_ev_support = 2 scaffold_24 - intron 9952112-9952301 asmbl_33146,asmbl_33148,asmbl_33150,asmbl_33152 scaffold_24 - retained_intron 9952112-9952301 asmbl_33147,asmbl_33149,asmbl_33151,asmbl_33153 // Retained and Spliced Intron # retained_intron 9952412-9952699 (orient:-) max_ev_support = 1 # spliced_intron 9952412-9952699 (orient:-) max_ev_support = 1 scaffold_24 - intron 9952412-9952699 asmbl_33150 scaffold_24 - retained_intron 9952412-9952699 asmbl_33149 // Exon Skipping and Retention # skipped_exon 9953362-9954371 (orient:-) max_ev_support = 2 # retained_exon 9953522-9953644 (orient:-) max_ev_support = 1 scaffold_24 - retained_exons 9953522-9953644 asmbl_33152,asmbl_33153 scaffold_24 - intron_skips_exon 9953362-9954371 asmbl_33146,asmbl_33147,asmbl_33148,asmbl_33151,asmbl_33154 // Retained and Spliced Intron # retained_intron 10346483-10346648 (orient:-) max_ev_support = 1 # spliced_intron 10346483-10346648 (orient:-) max_ev_support = 1 scaffold_24 - intron 10346483-10346648 asmbl_33173 scaffold_24 - retained_intron 10346483-10346648 asmbl_33172 // Retained and Spliced Intron # retained_intron 10597325-10597404 (orient:-) max_ev_support = 1 # spliced_intron 10597325-10597404 (orient:-) max_ev_support = 2 scaffold_24 - intron 10597325-10597404 asmbl_33203 scaffold_24 - retained_intron 10597325-10597404 asmbl_33205 // Retained and Spliced Intron # retained_intron 10782528-10782651 (orient:-) max_ev_support = 1 # spliced_intron 10782528-10782651 (orient:-) max_ev_support = 2 scaffold_24 - intron 10782528-10782651 asmbl_33210,asmbl_33212,asmbl_33214 scaffold_24 - retained_intron 10782528-10782651 asmbl_33211 // Retained and Spliced Intron # retained_intron 10778989-10779251 (orient:-) max_ev_support = 1 # spliced_intron 10778989-10779251 (orient:-) max_ev_support = 2 scaffold_24 - intron 10778989-10779251 asmbl_33210,asmbl_33211,asmbl_33214 scaffold_24 - retained_intron 10778989-10779251 asmbl_33212 // Retained and Spliced Intron # retained_intron 10779344-10779463 (orient:-) max_ev_support = 1 # spliced_intron 10779344-10779463 (orient:-) max_ev_support = 2 scaffold_24 - intron 10779344-10779463 asmbl_33210,asmbl_33211,asmbl_33214 scaffold_24 - retained_intron 10779344-10779463 asmbl_33212 // Retained and Spliced Intron # retained_intron 10779531-10779624 (orient:-) max_ev_support = 1 # spliced_intron 10779531-10779624 (orient:-) max_ev_support = 2 scaffold_24 - intron 10779531-10779624 asmbl_33210,asmbl_33211 scaffold_24 - retained_intron 10779531-10779624 asmbl_33212,asmbl_33214 // Retained and Spliced Intron # retained_intron 10778708-10778819 (orient:-) max_ev_support = 1 # spliced_intron 10778708-10778819 (orient:-) max_ev_support = 2 scaffold_24 - intron 10778708-10778819 asmbl_33210,asmbl_33211,asmbl_33212,asmbl_33214 scaffold_24 - retained_intron 10778708-10778819 asmbl_33213 // Retained and Spliced Intron # retained_intron 101644-101716 (orient:+) max_ev_support = 1 # spliced_intron 101644-101716 (orient:+) max_ev_support = 3 scaffold_25 + intron 101644-101716 asmbl_33309 scaffold_25 + retained_intron 101644-101716 asmbl_33310 // Exon Skipping and Retention # skipped_exon 400757-401602 (orient:+) max_ev_support = 2 # retained_exon 401316-401327 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 401316-401327 asmbl_33320 scaffold_25 + intron_skips_exon 400757-401602 asmbl_33319 // Retained and Spliced Intron # retained_intron 548373-548401 (orient:+) max_ev_support = 1 # spliced_intron 548373-548401 (orient:+) max_ev_support = 1 scaffold_25 + intron 548373-548401 asmbl_33330 scaffold_25 + retained_intron 548373-548401 asmbl_33331 // Retained and Spliced Intron # retained_intron 978574-978714 (orient:+) max_ev_support = 1 # spliced_intron 978574-978714 (orient:+) max_ev_support = 2 scaffold_25 + intron 978574-978714 asmbl_33350 scaffold_25 + retained_intron 978574-978714 asmbl_33351 // Retained and Spliced Intron # retained_intron 979268-979402 (orient:+) max_ev_support = 2 # spliced_intron 979268-979402 (orient:+) max_ev_support = 1 scaffold_25 + intron 979268-979402 asmbl_33353 scaffold_25 + retained_intron 979268-979402 asmbl_33352 // Retained and Spliced Intron # retained_intron 1432432-1432523 (orient:+) max_ev_support = 1 # spliced_intron 1432432-1432523 (orient:+) max_ev_support = 1 scaffold_25 + intron 1432432-1432523 asmbl_33364 scaffold_25 + retained_intron 1432432-1432523 asmbl_33363 // Retained and Spliced Intron # retained_intron 1440381-1440581 (orient:+) max_ev_support = 3 # spliced_intron 1440381-1440581 (orient:+) max_ev_support = 1 scaffold_25 + intron 1440381-1440581 asmbl_33368 scaffold_25 + retained_intron 1440381-1440581 asmbl_33366,asmbl_33367,asmbl_33371 // Retained and Spliced Intron # retained_intron 1440431-1440581 (orient:+) max_ev_support = 3 # spliced_intron 1440431-1440581 (orient:+) max_ev_support = 1 scaffold_25 + intron 1440431-1440581 asmbl_33369,asmbl_33370 scaffold_25 + retained_intron 1440431-1440581 asmbl_33366,asmbl_33367,asmbl_33371 // Exon Skipping and Retention # skipped_exon 2638200-2639906 (orient:+) max_ev_support = 1 # retained_exon 2639354-2639653 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 2639354-2639653 asmbl_33391 scaffold_25 + intron_skips_exon 2638200-2639906 asmbl_33392 // Exon Skipping and Retention # skipped_exon 2689435-2690331 (orient:+) max_ev_support = 1 # retained_exon 2689708-2689825 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 2689708-2689825 asmbl_33399,asmbl_33401 scaffold_25 + intron_skips_exon 2689435-2690331 asmbl_33400 // Exon Skipping and Retention # skipped_exon 2689826-2691172 (orient:+) max_ev_support = 1 # retained_exon 2690332-2690449 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 2690332-2690449 asmbl_33400 scaffold_25 + intron_skips_exon 2689826-2691172 asmbl_33399,asmbl_33401 // Retained and Spliced Intron # retained_intron 3615584-3615675 (orient:+) max_ev_support = 1 # spliced_intron 3615584-3615675 (orient:+) max_ev_support = 1 scaffold_25 + intron 3615584-3615675 asmbl_33429 scaffold_25 + retained_intron 3615584-3615675 asmbl_33430 // Exon Skipping and Retention # skipped_exon 3630560-3632886 (orient:+) max_ev_support = 1 # retained_exon 3631293-3631774 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 3631293-3631411,3631607-3631774 asmbl_33431,asmbl_33433,asmbl_33435 scaffold_25 + retained_exons 3631293-3631774 asmbl_33436 scaffold_25 + intron_skips_exon 3630560-3632886 asmbl_33434 // Retained and Spliced Intron # retained_intron 3631412-3631606 (orient:+) max_ev_support = 1 # spliced_intron 3631412-3631606 (orient:+) max_ev_support = 2 scaffold_25 + intron 3631412-3631606 asmbl_33431,asmbl_33433,asmbl_33435 scaffold_25 + retained_intron 3631412-3631606 asmbl_33436 // Retained and Spliced Intron # retained_intron 3709933-3710091 (orient:+) max_ev_support = 4 # spliced_intron 3709933-3710091 (orient:+) max_ev_support = 3 scaffold_25 + intron 3709933-3710091 asmbl_33453 scaffold_25 + retained_intron 3709933-3710091 asmbl_33452 // Exon Skipping and Retention # skipped_exon 3722400-3724710 (orient:+) max_ev_support = 2 # retained_exon 3723384-3723482 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 3723384-3723482 asmbl_33454 scaffold_25 + intron_skips_exon 3722400-3724710 asmbl_33455,asmbl_33456 // Retained and Spliced Intron # retained_intron 3725793-3725904 (orient:+) max_ev_support = 1 # spliced_intron 3725793-3725904 (orient:+) max_ev_support = 2 scaffold_25 + intron 3725793-3725904 asmbl_33454,asmbl_33455 scaffold_25 + retained_intron 3725793-3725904 asmbl_33456 // Retained and Spliced Intron # retained_intron 3755005-3755481 (orient:+) max_ev_support = 2 # spliced_intron 3755005-3755481 (orient:+) max_ev_support = 3 scaffold_25 + intron 3755005-3755481 asmbl_33459 scaffold_25 + retained_intron 3755005-3755481 asmbl_33460 // Exon Skipping and Retention # skipped_exon 4117889-4118352 (orient:+) max_ev_support = 1 # retained_exon 4117978-4118122 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 4117978-4118122 asmbl_33471,asmbl_33473 scaffold_25 + intron_skips_exon 4117889-4118352 asmbl_33472 // Retained and Spliced Intron # retained_intron 4289292-4289367 (orient:+) max_ev_support = 2 # spliced_intron 4289292-4289367 (orient:+) max_ev_support = 1 scaffold_25 + intron 4289292-4289367 asmbl_33481 scaffold_25 + retained_intron 4289292-4289367 asmbl_33480 // Retained and Spliced Intron # retained_intron 4319009-4319168 (orient:+) max_ev_support = 3 # spliced_intron 4319009-4319168 (orient:+) max_ev_support = 1 scaffold_25 + intron 4319009-4319168 asmbl_33486,asmbl_33487 scaffold_25 + retained_intron 4319009-4319168 asmbl_33483,asmbl_33484,asmbl_33485 // Exon Skipping and Retention # skipped_exon 4319201-4320037 (orient:+) max_ev_support = 2 # retained_exon 4319475-4319528 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 4319475-4319528 asmbl_33483,asmbl_33486,asmbl_33487 scaffold_25 + intron_skips_exon 4319201-4320037 asmbl_33484,asmbl_33485 // Retained and Spliced Intron # retained_intron 4441939-4442378 (orient:+) max_ev_support = 3 # spliced_intron 4441939-4442378 (orient:+) max_ev_support = 3 scaffold_25 + intron 4441939-4442378 asmbl_33493 scaffold_25 + retained_intron 4441939-4442378 asmbl_33492,asmbl_33497 // Retained and Spliced Intron # retained_intron 4442011-4442378 (orient:+) max_ev_support = 3 # spliced_intron 4442011-4442378 (orient:+) max_ev_support = 2 scaffold_25 + intron 4442011-4442378 asmbl_33494,asmbl_33498 scaffold_25 + retained_intron 4442011-4442378 asmbl_33492,asmbl_33497 // Retained and Spliced Intron # retained_intron 4458047-4458215 (orient:+) max_ev_support = 2 # spliced_intron 4458047-4458215 (orient:+) max_ev_support = 2 scaffold_25 + intron 4458047-4458215 asmbl_33502 scaffold_25 + retained_intron 4458047-4458215 asmbl_33503 // Retained and Spliced Intron # retained_intron 4538956-4539139 (orient:+) max_ev_support = 2 # spliced_intron 4538956-4539139 (orient:+) max_ev_support = 2 scaffold_25 + intron 4538956-4539139 asmbl_33507 scaffold_25 + retained_intron 4538956-4539139 asmbl_33508 // Retained and Spliced Intron # retained_intron 4539033-4539139 (orient:+) max_ev_support = 2 # spliced_intron 4539033-4539139 (orient:+) max_ev_support = 1 scaffold_25 + intron 4539033-4539139 asmbl_33511 scaffold_25 + retained_intron 4539033-4539139 asmbl_33508 // Exon Skipping and Retention # skipped_exon 4575779-4576670 (orient:+) max_ev_support = 3 # retained_exon 4576040-4576177 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 4576040-4576177 asmbl_33515,asmbl_33516,asmbl_33519,asmbl_33520 scaffold_25 + intron_skips_exon 4575779-4576670 asmbl_33517,asmbl_33521 // Retained and Spliced Intron # retained_intron 4594574-4594648 (orient:+) max_ev_support = 3 # spliced_intron 4594574-4594648 (orient:+) max_ev_support = 3 scaffold_25 + intron 4594574-4594648 asmbl_33522 scaffold_25 + retained_intron 4594574-4594648 asmbl_33523 // Retained and Spliced Intron # retained_intron 4810874-4810995 (orient:+) max_ev_support = 2 # spliced_intron 4810874-4810995 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810874-4810995 asmbl_33528,asmbl_33529,asmbl_33530,asmbl_33532 scaffold_25 + retained_intron 4810874-4810995 asmbl_33531 // Retained and Spliced Intron # retained_intron 4811129-4811361 (orient:+) max_ev_support = 2 # spliced_intron 4811129-4811361 (orient:+) max_ev_support = 3 scaffold_25 + intron 4811129-4811361 asmbl_33528,asmbl_33529,asmbl_33530 scaffold_25 + retained_intron 4811129-4811361 asmbl_33531 // Retained and Spliced Intron # retained_intron 4810463-4810690 (orient:+) max_ev_support = 1 # spliced_intron 4810463-4810690 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810463-4810690 asmbl_33528,asmbl_33530 scaffold_25 + retained_intron 4810463-4810690 asmbl_33532 // Retained and Spliced Intron # retained_intron 4810572-4810690 (orient:+) max_ev_support = 1 # spliced_intron 4810572-4810690 (orient:+) max_ev_support = 3 scaffold_25 + intron 4810572-4810690 asmbl_33529 scaffold_25 + retained_intron 4810572-4810690 asmbl_33532 // Exon Skipping and Retention # skipped_exon 4818189-4818895 (orient:+) max_ev_support = 2 # retained_exon 4818563-4818694 (orient:+) max_ev_support = 3 scaffold_25 + retained_exons 4818563-4818694 asmbl_33533,asmbl_33535 scaffold_25 + intron_skips_exon 4818189-4818895 asmbl_33534 // Exon Skipping and Retention # skipped_exon 5053997-5054997 (orient:+) max_ev_support = 2 # retained_exon 5054333-5054386 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 5054333-5054386 asmbl_33558 scaffold_25 + intron_skips_exon 5053997-5054997 asmbl_33557 // Exon Skipping and Retention # skipped_exon 5428517-5429201 (orient:+) max_ev_support = 1 # retained_exon 5428901-5428964 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 5428901-5428964 asmbl_33563 scaffold_25 + intron_skips_exon 5428517-5429201 asmbl_33565 // Retained and Spliced Intron # retained_intron 5635227-5635475 (orient:+) max_ev_support = 2 # spliced_intron 5635227-5635475 (orient:+) max_ev_support = 3 scaffold_25 + intron 5635227-5635475 asmbl_33569 scaffold_25 + retained_intron 5635227-5635475 asmbl_33570 // Retained and Spliced Intron # retained_intron 5776337-5776529 (orient:+) max_ev_support = 1 # spliced_intron 5776337-5776529 (orient:+) max_ev_support = 1 scaffold_25 + intron 5776337-5776529 asmbl_33581 scaffold_25 + retained_intron 5776337-5776529 asmbl_33577,asmbl_33580 // Retained and Spliced Intron # retained_intron 5776575-5776928 (orient:+) max_ev_support = 2 # spliced_intron 5776575-5776928 (orient:+) max_ev_support = 1 scaffold_25 + intron 5776575-5776928 asmbl_33580,asmbl_33581 scaffold_25 + retained_intron 5776575-5776928 asmbl_33577 // Retained and Spliced Intron # retained_intron 6253172-6253303 (orient:+) max_ev_support = 2 # spliced_intron 6253172-6253303 (orient:+) max_ev_support = 3 scaffold_25 + intron 6253172-6253303 asmbl_33602,asmbl_33605 scaffold_25 + retained_intron 6253172-6253303 asmbl_33603,asmbl_33604 // Retained and Spliced Intron # retained_intron 6253400-6253539 (orient:+) max_ev_support = 2 # spliced_intron 6253400-6253539 (orient:+) max_ev_support = 3 scaffold_25 + intron 6253400-6253539 asmbl_33602,asmbl_33604 scaffold_25 + retained_intron 6253400-6253539 asmbl_33603,asmbl_33605 // Retained and Spliced Intron # retained_intron 6253628-6253853 (orient:+) max_ev_support = 2 # spliced_intron 6253628-6253853 (orient:+) max_ev_support = 2 scaffold_25 + intron 6253628-6253853 asmbl_33602,asmbl_33604 scaffold_25 + retained_intron 6253628-6253853 asmbl_33603,asmbl_33605 // Retained and Spliced Intron # retained_intron 6303359-6303523 (orient:+) max_ev_support = 2 # spliced_intron 6303359-6303523 (orient:+) max_ev_support = 1 scaffold_25 + intron 6303359-6303523 asmbl_33608,asmbl_33614 scaffold_25 + retained_intron 6303359-6303523 asmbl_33606,asmbl_33607,asmbl_33610,asmbl_33611,asmbl_33612,asmbl_33613 // Retained and Spliced Intron # retained_intron 6303553-6303774 (orient:+) max_ev_support = 2 # spliced_intron 6303553-6303774 (orient:+) max_ev_support = 2 scaffold_25 + intron 6303553-6303774 asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33613,asmbl_33614 scaffold_25 + retained_intron 6303553-6303774 asmbl_33606,asmbl_33611,asmbl_33612 // Retained and Spliced Intron # retained_intron 6301207-6301328 (orient:+) max_ev_support = 1 # spliced_intron 6301207-6301328 (orient:+) max_ev_support = 2 scaffold_25 + intron 6301207-6301328 asmbl_33606,asmbl_33607,asmbl_33614 scaffold_25 + retained_intron 6301207-6301328 asmbl_33608,asmbl_33610,asmbl_33611,asmbl_33613 // Retained and Spliced Intron # retained_intron 6302449-6302790 (orient:+) max_ev_support = 1 # spliced_intron 6302449-6302790 (orient:+) max_ev_support = 2 scaffold_25 + intron 6302449-6302790 asmbl_33606,asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33611 scaffold_25 + retained_intron 6302449-6302790 asmbl_33613,asmbl_33614 // Retained and Spliced Intron # retained_intron 6302876-6303091 (orient:+) max_ev_support = 1 # spliced_intron 6302876-6303091 (orient:+) max_ev_support = 2 scaffold_25 + intron 6302876-6303091 asmbl_33606,asmbl_33607,asmbl_33608,asmbl_33610,asmbl_33611,asmbl_33612,asmbl_33613 scaffold_25 + retained_intron 6302876-6303091 asmbl_33614 // Exon Skipping and Retention # skipped_exon 6437223-6438668 (orient:+) max_ev_support = 1 # retained_exon 6438069-6438157 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 6438069-6438157 asmbl_33626 scaffold_25 + intron_skips_exon 6437223-6438668 asmbl_33628 // Exon Skipping and Retention # skipped_exon 6769681-6771338 (orient:+) max_ev_support = 1 # retained_exon 6770175-6770224 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 6770175-6770224 asmbl_33645 scaffold_25 + intron_skips_exon 6769681-6771338 asmbl_33644 // Exon Skipping and Retention # skipped_exon 7343437-7344530 (orient:+) max_ev_support = 1 # retained_exon 7343542-7343655 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 7343542-7343655 asmbl_33667 scaffold_25 + intron_skips_exon 7343437-7344530 asmbl_33668 // Exon Skipping and Retention # skipped_exon 7343656-7345494 (orient:+) max_ev_support = 2 # retained_exon 7344531-7344644 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 7344531-7344644 asmbl_33668 scaffold_25 + intron_skips_exon 7343656-7345494 asmbl_33667 // Retained and Spliced Intron # retained_intron 7878592-7878745 (orient:+) max_ev_support = 1 # spliced_intron 7878592-7878745 (orient:+) max_ev_support = 1 scaffold_25 + intron 7878592-7878745 asmbl_33681 scaffold_25 + retained_intron 7878592-7878745 asmbl_33680 // Retained and Spliced Intron # retained_intron 7903393-7903604 (orient:+) max_ev_support = 3 # spliced_intron 7903393-7903604 (orient:+) max_ev_support = 2 scaffold_25 + intron 7903393-7903604 asmbl_33685 scaffold_25 + retained_intron 7903393-7903604 asmbl_33684 // Retained and Spliced Intron # retained_intron 8475238-8475447 (orient:+) max_ev_support = 2 # spliced_intron 8475238-8475447 (orient:+) max_ev_support = 2 scaffold_25 + intron 8475238-8475447 asmbl_33731,asmbl_33734 scaffold_25 + retained_intron 8475238-8475447 asmbl_33732 // Retained and Spliced Intron # retained_intron 8476570-8476690 (orient:+) max_ev_support = 2 # spliced_intron 8476570-8476690 (orient:+) max_ev_support = 2 scaffold_25 + intron 8476570-8476690 asmbl_33731,asmbl_33734 scaffold_25 + retained_intron 8476570-8476690 asmbl_33733 // Retained and Spliced Intron # retained_intron 8475662-8475908 (orient:+) max_ev_support = 1 # spliced_intron 8475662-8475908 (orient:+) max_ev_support = 2 scaffold_25 + intron 8475662-8475908 asmbl_33731 scaffold_25 + retained_intron 8475662-8475908 asmbl_33734 // Exon Skipping and Retention # skipped_exon 8668191-8669550 (orient:+) max_ev_support = 2 # retained_exon 8668702-8668797 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 8668702-8668797 asmbl_33736 scaffold_25 + intron_skips_exon 8668191-8669550 asmbl_33735 // Retained and Spliced Intron # retained_intron 8680664-8680776 (orient:+) max_ev_support = 2 # spliced_intron 8680664-8680776 (orient:+) max_ev_support = 2 scaffold_25 + intron 8680664-8680776 asmbl_33740 scaffold_25 + retained_intron 8680664-8680776 asmbl_33741 // Retained and Spliced Intron # retained_intron 8707410-8707661 (orient:+) max_ev_support = 2 # spliced_intron 8707410-8707661 (orient:+) max_ev_support = 2 scaffold_25 + intron 8707410-8707661 asmbl_33748,asmbl_33750,asmbl_33751 scaffold_25 + retained_intron 8707410-8707661 asmbl_33746 // Retained and Spliced Intron # retained_intron 8705024-8705177 (orient:+) max_ev_support = 2 # spliced_intron 8705024-8705177 (orient:+) max_ev_support = 2 scaffold_25 + intron 8705024-8705177 asmbl_33752 scaffold_25 + retained_intron 8705024-8705177 asmbl_33747,asmbl_33753 // Retained and Spliced Intron # retained_intron 8709541-8709662 (orient:+) max_ev_support = 2 # spliced_intron 8709541-8709662 (orient:+) max_ev_support = 3 scaffold_25 + intron 8709541-8709662 asmbl_33746,asmbl_33747,asmbl_33749,asmbl_33750,asmbl_33751 scaffold_25 + retained_intron 8709541-8709662 asmbl_33748 // Exon Skipping and Retention # skipped_exon 8705312-8707661 (orient:+) max_ev_support = 2 # retained_exon 8707290-8707409 (orient:+) max_ev_support = 2 scaffold_25 + retained_exons 8707290-8707409 asmbl_33750 scaffold_25 + intron_skips_exon 8705312-8707661 asmbl_33747,asmbl_33749 // Retained and Spliced Intron # retained_intron 8705312-8706427 (orient:+) max_ev_support = 2 # spliced_intron 8705312-8706427 (orient:+) max_ev_support = 2 scaffold_25 + intron 8705312-8706427 asmbl_33746 scaffold_25 + retained_intron 8705312-8706427 asmbl_33752,asmbl_33753 // Retained and Spliced Intron # retained_intron 9090794-9090907 (orient:+) max_ev_support = 2 # spliced_intron 9090794-9090907 (orient:+) max_ev_support = 1 scaffold_25 + intron 9090794-9090907 asmbl_33772,asmbl_33773 scaffold_25 + retained_intron 9090794-9090907 asmbl_33771 // Exon Skipping and Retention # skipped_exon 9119329-9120031 (orient:+) max_ev_support = 1 # retained_exon 9119662-9119772 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 9119662-9119772 asmbl_33776 scaffold_25 + intron_skips_exon 9119329-9120031 asmbl_33775 // Retained and Spliced Intron # retained_intron 9119403-9119661 (orient:+) max_ev_support = 2 # spliced_intron 9119403-9119661 (orient:+) max_ev_support = 1 scaffold_25 + intron 9119403-9119661 asmbl_33776 scaffold_25 + retained_intron 9119403-9119661 asmbl_33777 // Retained and Spliced Intron # retained_intron 9291594-9291672 (orient:+) max_ev_support = 2 # spliced_intron 9291594-9291672 (orient:+) max_ev_support = 2 scaffold_25 + intron 9291594-9291672 asmbl_33793 scaffold_25 + retained_intron 9291594-9291672 asmbl_33794 // Retained and Spliced Intron # retained_intron 9292426-9292453 (orient:+) max_ev_support = 2 # spliced_intron 9292426-9292453 (orient:+) max_ev_support = 1 scaffold_25 + intron 9292426-9292453 asmbl_33793 scaffold_25 + retained_intron 9292426-9292453 asmbl_33795 // Retained and Spliced Intron # retained_intron 9337552-9337746 (orient:+) max_ev_support = 1 # spliced_intron 9337552-9337746 (orient:+) max_ev_support = 2 scaffold_25 + intron 9337552-9337746 asmbl_33799,asmbl_33800,asmbl_33801 scaffold_25 + retained_intron 9337552-9337746 asmbl_33797 // Retained and Spliced Intron # retained_intron 9337633-9337746 (orient:+) max_ev_support = 1 # spliced_intron 9337633-9337746 (orient:+) max_ev_support = 1 scaffold_25 + intron 9337633-9337746 asmbl_33798 scaffold_25 + retained_intron 9337633-9337746 asmbl_33797 // Retained and Spliced Intron # retained_intron 9338119-9338227 (orient:+) max_ev_support = 3 # spliced_intron 9338119-9338227 (orient:+) max_ev_support = 2 scaffold_25 + intron 9338119-9338227 asmbl_33799,asmbl_33800,asmbl_33801 scaffold_25 + retained_intron 9338119-9338227 asmbl_33797,asmbl_33798 // Retained and Spliced Intron # retained_intron 9336651-9337098 (orient:+) max_ev_support = 1 # spliced_intron 9336651-9337098 (orient:+) max_ev_support = 2 scaffold_25 + intron 9336651-9337098 asmbl_33797,asmbl_33798,asmbl_33799 scaffold_25 + retained_intron 9336651-9337098 asmbl_33800,asmbl_33801 // Retained and Spliced Intron # retained_intron 9337232-9337354 (orient:+) max_ev_support = 1 # spliced_intron 9337232-9337354 (orient:+) max_ev_support = 2 scaffold_25 + intron 9337232-9337354 asmbl_33797,asmbl_33798,asmbl_33799,asmbl_33800 scaffold_25 + retained_intron 9337232-9337354 asmbl_33801 // Retained and Spliced Intron # retained_intron 9431822-9432003 (orient:+) max_ev_support = 2 # spliced_intron 9431822-9432003 (orient:+) max_ev_support = 1 scaffold_25 + intron 9431822-9432003 asmbl_33806 scaffold_25 + retained_intron 9431822-9432003 asmbl_33804 // Retained and Spliced Intron # retained_intron 9450215-9450348 (orient:+) max_ev_support = 1 # spliced_intron 9450215-9450348 (orient:+) max_ev_support = 2 scaffold_25 + intron 9450215-9450348 asmbl_33807,asmbl_33808 scaffold_25 + retained_intron 9450215-9450348 asmbl_33809 // Retained and Spliced Intron # retained_intron 9554175-9556117 (orient:+) max_ev_support = 1 # spliced_intron 9554175-9556117 (orient:+) max_ev_support = 2 scaffold_25 + intron 9554175-9556117 asmbl_33819 scaffold_25 + retained_intron 9554175-9556117 asmbl_33820,asmbl_33821 // Exon Skipping and Retention # skipped_exon 9848082-9849586 (orient:+) max_ev_support = 2 # retained_exon 9848484-9848520 (orient:+) max_ev_support = 1 scaffold_25 + retained_exons 9848484-9848520 asmbl_33837 scaffold_25 + intron_skips_exon 9848082-9849586 asmbl_33836 // Retained and Spliced Intron # retained_intron 185266-185787 (orient:-) max_ev_support = 2 # spliced_intron 185266-185787 (orient:-) max_ev_support = 2 scaffold_25 - intron 185266-185787 asmbl_33946 scaffold_25 - retained_intron 185266-185787 asmbl_33947 // Retained and Spliced Intron # retained_intron 339732-339809 (orient:-) max_ev_support = 2 # spliced_intron 339732-339809 (orient:-) max_ev_support = 2 scaffold_25 - intron 339732-339809 asmbl_33965 scaffold_25 - retained_intron 339732-339809 asmbl_33964 // Retained and Spliced Intron # retained_intron 362923-362986 (orient:-) max_ev_support = 1 # spliced_intron 362923-362986 (orient:-) max_ev_support = 1 scaffold_25 - intron 362923-362986 asmbl_33971 scaffold_25 - retained_intron 362923-362986 asmbl_33970 // Exon Skipping and Retention # skipped_exon 637428-638058 (orient:-) max_ev_support = 2 # retained_exon 637688-637796 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 637688-637796 asmbl_33987 scaffold_25 - intron_skips_exon 637428-638058 asmbl_33986 // Retained and Spliced Intron # retained_intron 801994-802101 (orient:-) max_ev_support = 3 # spliced_intron 801994-802101 (orient:-) max_ev_support = 1 scaffold_25 - intron 801994-802101 asmbl_33991,asmbl_33994,asmbl_33995 scaffold_25 - retained_intron 801994-802101 asmbl_33992 // Retained and Spliced Intron # retained_intron 994851-995030 (orient:-) max_ev_support = 1 # spliced_intron 994851-995030 (orient:-) max_ev_support = 2 scaffold_25 - intron 994851-995030 asmbl_34006,asmbl_34008 scaffold_25 - retained_intron 994851-995030 asmbl_34007 // Retained and Spliced Intron # retained_intron 996826-996894 (orient:-) max_ev_support = 1 # spliced_intron 996826-996894 (orient:-) max_ev_support = 2 scaffold_25 - intron 996826-996894 asmbl_34006,asmbl_34007 scaffold_25 - retained_intron 996826-996894 asmbl_34008 // Retained and Spliced Intron # retained_intron 1903565-1903665 (orient:-) max_ev_support = 1 # spliced_intron 1903565-1903665 (orient:-) max_ev_support = 1 scaffold_25 - intron 1903565-1903665 asmbl_34040 scaffold_25 - retained_intron 1903565-1903665 asmbl_34041 // Retained and Spliced Intron # retained_intron 1906533-1906576 (orient:-) max_ev_support = 1 # spliced_intron 1906533-1906576 (orient:-) max_ev_support = 1 scaffold_25 - intron 1906533-1906576 asmbl_34039 scaffold_25 - retained_intron 1906533-1906576 asmbl_34042 // Retained and Spliced Intron # retained_intron 3095414-3095695 (orient:-) max_ev_support = 1 # spliced_intron 3095414-3095695 (orient:-) max_ev_support = 3 scaffold_25 - intron 3095414-3095695 asmbl_34074,asmbl_34075,asmbl_34076 scaffold_25 - retained_intron 3095414-3095695 asmbl_34084 // Retained and Spliced Intron # retained_intron 3186833-3186999 (orient:-) max_ev_support = 2 # spliced_intron 3186833-3186999 (orient:-) max_ev_support = 2 scaffold_25 - intron 3186833-3186999 asmbl_34100,asmbl_34101 scaffold_25 - retained_intron 3186833-3186999 asmbl_34099,asmbl_34102 // Exon Skipping and Retention # skipped_exon 3292205-3293927 (orient:-) max_ev_support = 2 # retained_exon 3293326-3293378 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 3293326-3293378 asmbl_34107 scaffold_25 - intron_skips_exon 3292205-3293927 asmbl_34105,asmbl_34106 // Retained and Spliced Intron # retained_intron 3712653-3712743 (orient:-) max_ev_support = 1 # spliced_intron 3712653-3712743 (orient:-) max_ev_support = 2 scaffold_25 - intron 3712653-3712743 asmbl_34132 scaffold_25 - retained_intron 3712653-3712743 asmbl_34133 // Retained and Spliced Intron # retained_intron 3737855-3737965 (orient:-) max_ev_support = 1 # spliced_intron 3737855-3737965 (orient:-) max_ev_support = 2 scaffold_25 - intron 3737855-3737965 asmbl_34134 scaffold_25 - retained_intron 3737855-3737965 asmbl_34136 // Retained and Spliced Intron # retained_intron 3738082-3738200 (orient:-) max_ev_support = 1 # spliced_intron 3738082-3738200 (orient:-) max_ev_support = 2 scaffold_25 - intron 3738082-3738200 asmbl_34134 scaffold_25 - retained_intron 3738082-3738200 asmbl_34136 // Exon Skipping and Retention # skipped_exon 3820067-3820402 (orient:-) max_ev_support = 2 # retained_exon 3820184-3820299 (orient:-) max_ev_support = 3 scaffold_25 - retained_exons 3820184-3820299 asmbl_34140,asmbl_34141 scaffold_25 - intron_skips_exon 3820067-3820402 asmbl_34143 // Retained and Spliced Intron # retained_intron 3820300-3820402 (orient:-) max_ev_support = 2 # spliced_intron 3820300-3820402 (orient:-) max_ev_support = 3 scaffold_25 - intron 3820300-3820402 asmbl_34140,asmbl_34141 scaffold_25 - retained_intron 3820300-3820402 asmbl_34142 // Exon Skipping and Retention # skipped_exon 4332946-4335709 (orient:-) max_ev_support = 2 # retained_exon 4334269-4334343 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 4334269-4334343 asmbl_34164 scaffold_25 - intron_skips_exon 4332946-4335709 asmbl_34165 // Exon Skipping and Retention # skipped_exon 4467225-4469133 (orient:-) max_ev_support = 1 # retained_exon 4467883-4467984 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 4467883-4467984 asmbl_34175 scaffold_25 - intron_skips_exon 4467225-4469133 asmbl_34174 // Retained and Spliced Intron # retained_intron 4549453-4549681 (orient:-) max_ev_support = 1 # spliced_intron 4549453-4549681 (orient:-) max_ev_support = 2 scaffold_25 - intron 4549453-4549681 asmbl_34192 scaffold_25 - retained_intron 4549453-4549681 asmbl_34194 // Retained and Spliced Intron # retained_intron 4871626-4872194 (orient:-) max_ev_support = 2 # spliced_intron 4871626-4872194 (orient:-) max_ev_support = 3 scaffold_25 - intron 4871626-4872194 asmbl_34213 scaffold_25 - retained_intron 4871626-4872194 asmbl_34214 // Retained and Spliced Intron # retained_intron 5158234-5158408 (orient:-) max_ev_support = 2 # spliced_intron 5158234-5158408 (orient:-) max_ev_support = 2 scaffold_25 - intron 5158234-5158408 asmbl_34225,asmbl_34231 scaffold_25 - retained_intron 5158234-5158408 asmbl_34227 // Retained and Spliced Intron # retained_intron 5157955-5158050 (orient:-) max_ev_support = 1 # spliced_intron 5157955-5158050 (orient:-) max_ev_support = 1 scaffold_25 - intron 5157955-5158050 asmbl_34230 scaffold_25 - retained_intron 5157955-5158050 asmbl_34229 // Retained and Spliced Intron # retained_intron 5157955-5158063 (orient:-) max_ev_support = 1 # spliced_intron 5157955-5158063 (orient:-) max_ev_support = 1 scaffold_25 - intron 5157955-5158063 asmbl_34231 scaffold_25 - retained_intron 5157955-5158063 asmbl_34229 // Retained and Spliced Intron # retained_intron 5157955-5158103 (orient:-) max_ev_support = 1 # spliced_intron 5157955-5158103 (orient:-) max_ev_support = 2 scaffold_25 - intron 5157955-5158103 asmbl_34225,asmbl_34227 scaffold_25 - retained_intron 5157955-5158103 asmbl_34229 // Retained and Spliced Intron # retained_intron 5377112-5377334 (orient:-) max_ev_support = 3 # spliced_intron 5377112-5377334 (orient:-) max_ev_support = 2 scaffold_25 - intron 5377112-5377334 asmbl_34233 scaffold_25 - retained_intron 5377112-5377334 asmbl_34232 // Retained and Spliced Intron # retained_intron 5382118-5382521 (orient:-) max_ev_support = 3 # spliced_intron 5382118-5382521 (orient:-) max_ev_support = 3 scaffold_25 - intron 5382118-5382521 asmbl_34235 scaffold_25 - retained_intron 5382118-5382521 asmbl_34234 // Retained and Spliced Intron # retained_intron 5625977-5626514 (orient:-) max_ev_support = 3 # spliced_intron 5625977-5626514 (orient:-) max_ev_support = 3 scaffold_25 - intron 5625977-5626514 asmbl_34250 scaffold_25 - retained_intron 5625977-5626514 asmbl_34251,asmbl_34252 // Retained and Spliced Intron # retained_intron 5696565-5696676 (orient:-) max_ev_support = 1 # spliced_intron 5696565-5696676 (orient:-) max_ev_support = 2 scaffold_25 - intron 5696565-5696676 asmbl_34254,asmbl_34257 scaffold_25 - retained_intron 5696565-5696676 asmbl_34255 // Exon Skipping and Retention # skipped_exon 5827048-5828229 (orient:-) max_ev_support = 1 # retained_exon 5827636-5827769 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 5827636-5827769 asmbl_34267 scaffold_25 - intron_skips_exon 5827048-5828229 asmbl_34266 // Exon Skipping and Retention # skipped_exon 5828532-5829193 (orient:-) max_ev_support = 3 # retained_exon 5828682-5829053 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 5828682-5828737,5828915-5829053 asmbl_34267 scaffold_25 - intron_skips_exon 5828532-5829193 asmbl_34266 // Retained and Spliced Intron # retained_intron 6038950-6039040 (orient:-) max_ev_support = 2 # spliced_intron 6038950-6039040 (orient:-) max_ev_support = 2 scaffold_25 - intron 6038950-6039040 asmbl_34282,asmbl_34283 scaffold_25 - retained_intron 6038950-6039040 asmbl_34281 // Retained and Spliced Intron # retained_intron 6067602-6067783 (orient:-) max_ev_support = 1 # spliced_intron 6067602-6067783 (orient:-) max_ev_support = 1 scaffold_25 - intron 6067602-6067783 asmbl_34294 scaffold_25 - retained_intron 6067602-6067783 asmbl_34291,asmbl_34292,asmbl_34293 // Retained and Spliced Intron # retained_intron 6067602-6068378 (orient:-) max_ev_support = 1 # spliced_intron 6067602-6068378 (orient:-) max_ev_support = 2 scaffold_25 - intron 6067602-6068378 asmbl_34287,asmbl_34295 scaffold_25 - retained_intron 6067602-6068378 asmbl_34291,asmbl_34292,asmbl_34293 // Retained and Spliced Intron # retained_intron 6067817-6067976 (orient:-) max_ev_support = 1 # spliced_intron 6067817-6067976 (orient:-) max_ev_support = 1 scaffold_25 - intron 6067817-6067976 asmbl_34294 scaffold_25 - retained_intron 6067817-6067976 asmbl_34291,asmbl_34292,asmbl_34293 // Retained and Spliced Intron # retained_intron 6068856-6068946 (orient:-) max_ev_support = 1 # spliced_intron 6068856-6068946 (orient:-) max_ev_support = 2 scaffold_25 - intron 6068856-6068946 asmbl_34287,asmbl_34291,asmbl_34293,asmbl_34294,asmbl_34295 scaffold_25 - retained_intron 6068856-6068946 asmbl_34292 // Retained and Spliced Intron # retained_intron 6066072-6066195 (orient:-) max_ev_support = 1 # spliced_intron 6066072-6066195 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066072-6066195 asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34294 scaffold_25 - retained_intron 6066072-6066195 asmbl_34293 // Exon Skipping and Retention # skipped_exon 6067602-6068378 (orient:-) max_ev_support = 2 # retained_exon 6067784-6067816 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 6067784-6067816 asmbl_34294 scaffold_25 - intron_skips_exon 6067602-6068378 asmbl_34287,asmbl_34295 // Retained and Spliced Intron # retained_intron 6066560-6066726 (orient:-) max_ev_support = 1 # spliced_intron 6066560-6066726 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066560-6066726 asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294 scaffold_25 - retained_intron 6066560-6066726 asmbl_34295 // Retained and Spliced Intron # retained_intron 6066916-6067033 (orient:-) max_ev_support = 1 # spliced_intron 6066916-6067033 (orient:-) max_ev_support = 2 scaffold_25 - intron 6066916-6067033 asmbl_34287,asmbl_34291,asmbl_34292,asmbl_34293,asmbl_34294 scaffold_25 - retained_intron 6066916-6067033 asmbl_34295 // Retained and Spliced Intron # retained_intron 6311971-6313061 (orient:-) max_ev_support = 2 # spliced_intron 6311971-6313061 (orient:-) max_ev_support = 1 scaffold_25 - intron 6311971-6313061 asmbl_34324 scaffold_25 - retained_intron 6311971-6313061 asmbl_34322 // Retained and Spliced Intron # retained_intron 6311974-6313061 (orient:-) max_ev_support = 2 # spliced_intron 6311974-6313061 (orient:-) max_ev_support = 2 scaffold_25 - intron 6311974-6313061 asmbl_34323 scaffold_25 - retained_intron 6311974-6313061 asmbl_34322 // Retained and Spliced Intron # retained_intron 6324446-6324641 (orient:-) max_ev_support = 2 # spliced_intron 6324446-6324641 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324446-6324641 asmbl_34329,asmbl_34332,asmbl_34333,asmbl_34334 scaffold_25 - retained_intron 6324446-6324641 asmbl_34330,asmbl_34331,asmbl_34335 // Retained and Spliced Intron # retained_intron 6324770-6324860 (orient:-) max_ev_support = 2 # spliced_intron 6324770-6324860 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324770-6324860 asmbl_34329,asmbl_34332,asmbl_34333,asmbl_34334,asmbl_34335 scaffold_25 - retained_intron 6324770-6324860 asmbl_34330,asmbl_34331 // Retained and Spliced Intron # retained_intron 6325008-6325126 (orient:-) max_ev_support = 2 # spliced_intron 6325008-6325126 (orient:-) max_ev_support = 2 scaffold_25 - intron 6325008-6325126 asmbl_34329,asmbl_34331,asmbl_34332,asmbl_34333,asmbl_34334,asmbl_34335 scaffold_25 - retained_intron 6325008-6325126 asmbl_34330 // Retained and Spliced Intron # retained_intron 6324156-6324245 (orient:-) max_ev_support = 1 # spliced_intron 6324156-6324245 (orient:-) max_ev_support = 2 scaffold_25 - intron 6324156-6324245 asmbl_34329,asmbl_34333 scaffold_25 - retained_intron 6324156-6324245 asmbl_34331,asmbl_34332,asmbl_34334 // Retained and Spliced Intron # retained_intron 6325646-6326095 (orient:-) max_ev_support = 1 # spliced_intron 6325646-6326095 (orient:-) max_ev_support = 2 scaffold_25 - intron 6325646-6326095 asmbl_34329,asmbl_34331,asmbl_34334,asmbl_34335 scaffold_25 - retained_intron 6325646-6326095 asmbl_34332,asmbl_34333 // Retained and Spliced Intron # retained_intron 6525745-6525968 (orient:-) max_ev_support = 1 # spliced_intron 6525745-6525968 (orient:-) max_ev_support = 1 scaffold_25 - intron 6525745-6525968 asmbl_34337 scaffold_25 - retained_intron 6525745-6525968 asmbl_34338 // Retained and Spliced Intron # retained_intron 6525867-6525968 (orient:-) max_ev_support = 1 # spliced_intron 6525867-6525968 (orient:-) max_ev_support = 1 scaffold_25 - intron 6525867-6525968 asmbl_34339 scaffold_25 - retained_intron 6525867-6525968 asmbl_34338 // Retained and Spliced Intron # retained_intron 7220041-7220502 (orient:-) max_ev_support = 1 # spliced_intron 7220041-7220502 (orient:-) max_ev_support = 1 scaffold_25 - intron 7220041-7220502 asmbl_34363 scaffold_25 - retained_intron 7220041-7220502 asmbl_34364 // Retained and Spliced Intron # retained_intron 7220043-7220502 (orient:-) max_ev_support = 1 # spliced_intron 7220043-7220502 (orient:-) max_ev_support = 3 scaffold_25 - intron 7220043-7220502 asmbl_34362 scaffold_25 - retained_intron 7220043-7220502 asmbl_34364 // Exon Skipping and Retention # skipped_exon 7803095-7803570 (orient:-) max_ev_support = 1 # retained_exon 7803319-7803458 (orient:-) max_ev_support = 2 scaffold_25 - retained_exons 7803319-7803458 asmbl_34378,asmbl_34379 scaffold_25 - intron_skips_exon 7803095-7803570 asmbl_34380 // Retained and Spliced Intron # retained_intron 7803694-7803782 (orient:-) max_ev_support = 1 # spliced_intron 7803694-7803782 (orient:-) max_ev_support = 2 scaffold_25 - intron 7803694-7803782 asmbl_34378 scaffold_25 - retained_intron 7803694-7803782 asmbl_34379 // Retained and Spliced Intron # retained_intron 7905410-7905469 (orient:-) max_ev_support = 1 # spliced_intron 7905410-7905469 (orient:-) max_ev_support = 1 scaffold_25 - intron 7905410-7905469 asmbl_34386 scaffold_25 - retained_intron 7905410-7905469 asmbl_34387 // Retained and Spliced Intron # retained_intron 7905436-7905495 (orient:-) max_ev_support = 1 # spliced_intron 7905436-7905495 (orient:-) max_ev_support = 1 scaffold_25 - intron 7905436-7905495 asmbl_34385 scaffold_25 - retained_intron 7905436-7905495 asmbl_34387 // Exon Skipping and Retention # skipped_exon 8270367-8270753 (orient:-) max_ev_support = 2 # retained_exon 8270512-8270617 (orient:-) max_ev_support = 3 scaffold_25 - retained_exons 8270512-8270617 asmbl_34399 scaffold_25 - intron_skips_exon 8270367-8270753 asmbl_34400 // Exon Skipping and Retention # skipped_exon 8697800-8700439 (orient:-) max_ev_support = 2 # retained_exon 8698556-8698659 (orient:-) max_ev_support = 4 scaffold_25 - retained_exons 8698556-8698659 asmbl_34433 scaffold_25 - intron_skips_exon 8697800-8700439 asmbl_34435 // Exon Skipping and Retention # skipped_exon 8697800-8700443 (orient:-) max_ev_support = 1 # retained_exon 8698556-8698659 (orient:-) max_ev_support = 4 scaffold_25 - retained_exons 8698556-8698659 asmbl_34433 scaffold_25 - intron_skips_exon 8697800-8700443 asmbl_34437 // Retained and Spliced Intron # retained_intron 9043176-9043406 (orient:-) max_ev_support = 2 # spliced_intron 9043176-9043406 (orient:-) max_ev_support = 4 scaffold_25 - intron 9043176-9043406 asmbl_34447,asmbl_34448,asmbl_34452 scaffold_25 - retained_intron 9043176-9043406 asmbl_34451 // Retained and Spliced Intron # retained_intron 9043482-9043880 (orient:-) max_ev_support = 2 # spliced_intron 9043482-9043880 (orient:-) max_ev_support = 4 scaffold_25 - intron 9043482-9043880 asmbl_34447,asmbl_34448 scaffold_25 - retained_intron 9043482-9043880 asmbl_34451,asmbl_34452 // Retained and Spliced Intron # retained_intron 9503273-9503414 (orient:-) max_ev_support = 2 # spliced_intron 9503273-9503414 (orient:-) max_ev_support = 2 scaffold_25 - intron 9503273-9503414 asmbl_34474,asmbl_34476 scaffold_25 - retained_intron 9503273-9503414 asmbl_34475 // Exon Skipping and Retention # skipped_exon 9939882-9942193 (orient:-) max_ev_support = 1 # retained_exon 9940568-9940619 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 9940568-9940619 asmbl_34499 scaffold_25 - intron_skips_exon 9939882-9942193 asmbl_34500 // Exon Skipping and Retention # skipped_exon 9939292-9940567 (orient:-) max_ev_support = 1 # retained_exon 9939830-9939881 (orient:-) max_ev_support = 1 scaffold_25 - retained_exons 9939830-9939881 asmbl_34500 scaffold_25 - intron_skips_exon 9939292-9940567 asmbl_34499 // Retained and Spliced Intron # retained_intron 2809035-2809204 (orient:-) max_ev_support = 1 # spliced_intron 2809035-2809204 (orient:-) max_ev_support = 1 scaffold_26 - intron 2809035-2809204 asmbl_34723 scaffold_26 - retained_intron 2809035-2809204 asmbl_34722 // Exon Skipping and Retention # skipped_exon 2960900-2963885 (orient:-) max_ev_support = 2 # retained_exon 2962932-2962975 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 2962932-2962975 asmbl_34733,asmbl_34735,asmbl_34738 scaffold_26 - intron_skips_exon 2960900-2963885 asmbl_34734,asmbl_34736 // Exon Skipping and Retention # skipped_exon 3178424-3179728 (orient:-) max_ev_support = 2 # retained_exon 3179305-3179382 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 3179305-3179382 asmbl_34749 scaffold_26 - intron_skips_exon 3178424-3179728 asmbl_34748 // Retained and Spliced Intron # retained_intron 3651416-3651580 (orient:-) max_ev_support = 2 # spliced_intron 3651416-3651580 (orient:-) max_ev_support = 2 scaffold_26 - intron 3651416-3651580 asmbl_34773 scaffold_26 - retained_intron 3651416-3651580 asmbl_34774 // Retained and Spliced Intron # retained_intron 3811137-3811207 (orient:-) max_ev_support = 2 # spliced_intron 3811137-3811207 (orient:-) max_ev_support = 2 scaffold_26 - intron 3811137-3811207 asmbl_34782 scaffold_26 - retained_intron 3811137-3811207 asmbl_34783 // Exon Skipping and Retention # skipped_exon 3941793-3943946 (orient:-) max_ev_support = 1 # retained_exon 3941905-3941985 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 3941905-3941985 asmbl_34789 scaffold_26 - intron_skips_exon 3941793-3943946 asmbl_34791 // Retained and Spliced Intron # retained_intron 4135749-4135855 (orient:-) max_ev_support = 1 # spliced_intron 4135749-4135855 (orient:-) max_ev_support = 2 scaffold_26 - intron 4135749-4135855 asmbl_34805,asmbl_34806,asmbl_34808,asmbl_34809 scaffold_26 - retained_intron 4135749-4135855 asmbl_34807 // Retained and Spliced Intron # retained_intron 4136117-4136364 (orient:-) max_ev_support = 2 # spliced_intron 4136117-4136364 (orient:-) max_ev_support = 2 scaffold_26 - intron 4136117-4136364 asmbl_34805,asmbl_34806,asmbl_34808 scaffold_26 - retained_intron 4136117-4136364 asmbl_34807,asmbl_34809 // Exon Skipping and Retention # skipped_exon 4331957-4333629 (orient:-) max_ev_support = 1 # retained_exon 4332659-4333373 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 4332659-4332682,4333329-4333373 asmbl_34820 scaffold_26 - intron_skips_exon 4331957-4333629 asmbl_34821 // Exon Skipping and Retention # skipped_exon 4332683-4333629 (orient:-) max_ev_support = 1 # retained_exon 4333329-4333373 (orient:-) max_ev_support = 1 scaffold_26 - retained_exons 4333329-4333373 asmbl_34820 scaffold_26 - intron_skips_exon 4332683-4333629 asmbl_34822 // Retained and Spliced Intron # retained_intron 4590766-4590793 (orient:-) max_ev_support = 3 # spliced_intron 4590766-4590793 (orient:-) max_ev_support = 1 scaffold_26 - intron 4590766-4590793 asmbl_34846 scaffold_26 - retained_intron 4590766-4590793 asmbl_34841 // Retained and Spliced Intron # retained_intron 4678864-4679059 (orient:-) max_ev_support = 1 # spliced_intron 4678864-4679059 (orient:-) max_ev_support = 1 scaffold_26 - intron 4678864-4679059 asmbl_34858 scaffold_26 - retained_intron 4678864-4679059 asmbl_34857 // Retained and Spliced Intron # retained_intron 4679112-4679225 (orient:-) max_ev_support = 1 # spliced_intron 4679112-4679225 (orient:-) max_ev_support = 1 scaffold_26 - intron 4679112-4679225 asmbl_34857 scaffold_26 - retained_intron 4679112-4679225 asmbl_34858 // Retained and Spliced Intron # retained_intron 4925304-4925435 (orient:-) max_ev_support = 3 # spliced_intron 4925304-4925435 (orient:-) max_ev_support = 1 scaffold_26 - intron 4925304-4925435 asmbl_34877 scaffold_26 - retained_intron 4925304-4925435 asmbl_34876 // Exon Skipping and Retention # skipped_exon 5647284-5649356 (orient:-) max_ev_support = 2 # retained_exon 5648478-5648504 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 5648478-5648504 asmbl_34885,asmbl_34887,asmbl_34888,asmbl_34889,asmbl_34890,asmbl_34891 scaffold_26 - intron_skips_exon 5647284-5649356 asmbl_34886 // Exon Skipping and Retention # skipped_exon 5648505-5649556 (orient:-) max_ev_support = 1 # retained_exon 5649357-5649445 (orient:-) max_ev_support = 4 scaffold_26 - retained_exons 5649357-5649445 asmbl_34885,asmbl_34886,asmbl_34888,asmbl_34889,asmbl_34890,asmbl_34891 scaffold_26 - intron_skips_exon 5648505-5649556 asmbl_34887 // Exon Skipping and Retention # skipped_exon 5657869-5660156 (orient:-) max_ev_support = 1 # retained_exon 5658452-5658472 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 5658452-5658472 asmbl_34885,asmbl_34889 scaffold_26 - intron_skips_exon 5657869-5660156 asmbl_34886,asmbl_34887,asmbl_34888,asmbl_34890,asmbl_34891 // Retained and Spliced Intron # retained_intron 5795098-5795276 (orient:-) max_ev_support = 1 # spliced_intron 5795098-5795276 (orient:-) max_ev_support = 1 scaffold_26 - intron 5795098-5795276 asmbl_34902 scaffold_26 - retained_intron 5795098-5795276 asmbl_34903 // Retained and Spliced Intron # retained_intron 5874040-5874142 (orient:-) max_ev_support = 1 # spliced_intron 5874040-5874142 (orient:-) max_ev_support = 3 scaffold_26 - intron 5874040-5874142 asmbl_34908 scaffold_26 - retained_intron 5874040-5874142 asmbl_34909 // Retained and Spliced Intron # retained_intron 5874800-5875093 (orient:-) max_ev_support = 3 # spliced_intron 5874800-5875093 (orient:-) max_ev_support = 3 scaffold_26 - intron 5874800-5875093 asmbl_34908 scaffold_26 - retained_intron 5874800-5875093 asmbl_34909 // Exon Skipping and Retention # skipped_exon 5894384-5894720 (orient:-) max_ev_support = 1 # retained_exon 5894474-5894601 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 5894474-5894601 asmbl_34913,asmbl_34914,asmbl_34919 scaffold_26 - intron_skips_exon 5894384-5894720 asmbl_34918 // Retained and Spliced Intron # retained_intron 5895307-5895541 (orient:-) max_ev_support = 2 # spliced_intron 5895307-5895541 (orient:-) max_ev_support = 2 scaffold_26 - intron 5895307-5895541 asmbl_34913,asmbl_34918,asmbl_34919 scaffold_26 - retained_intron 5895307-5895541 asmbl_34914 // Retained and Spliced Intron # retained_intron 5894602-5894720 (orient:-) max_ev_support = 2 # spliced_intron 5894602-5894720 (orient:-) max_ev_support = 2 scaffold_26 - intron 5894602-5894720 asmbl_34913,asmbl_34914,asmbl_34919 scaffold_26 - retained_intron 5894602-5894720 asmbl_34915 // Retained and Spliced Intron # retained_intron 5945002-5945154 (orient:-) max_ev_support = 2 # spliced_intron 5945002-5945154 (orient:-) max_ev_support = 2 scaffold_26 - intron 5945002-5945154 asmbl_34925 scaffold_26 - retained_intron 5945002-5945154 asmbl_34924 // Retained and Spliced Intron # retained_intron 5953595-5953639 (orient:-) max_ev_support = 3 # spliced_intron 5953595-5953639 (orient:-) max_ev_support = 1 scaffold_26 - intron 5953595-5953639 asmbl_34928 scaffold_26 - retained_intron 5953595-5953639 asmbl_34926,asmbl_34927 // Retained and Spliced Intron # retained_intron 5954384-5954477 (orient:-) max_ev_support = 1 # spliced_intron 5954384-5954477 (orient:-) max_ev_support = 2 scaffold_26 - intron 5954384-5954477 asmbl_34926,asmbl_34928 scaffold_26 - retained_intron 5954384-5954477 asmbl_34927 // Retained and Spliced Intron # retained_intron 6320095-6320279 (orient:-) max_ev_support = 2 # spliced_intron 6320095-6320279 (orient:-) max_ev_support = 2 scaffold_26 - intron 6320095-6320279 asmbl_34943 scaffold_26 - retained_intron 6320095-6320279 asmbl_34944,asmbl_34945 // Exon Skipping and Retention # skipped_exon 6350865-6351295 (orient:-) max_ev_support = 1 # retained_exon 6351172-6351208 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 6351172-6351208 asmbl_34952,asmbl_34953 scaffold_26 - intron_skips_exon 6350865-6351295 asmbl_34957 // Retained and Spliced Intron # retained_intron 6350817-6351171 (orient:-) max_ev_support = 2 # spliced_intron 6350817-6351171 (orient:-) max_ev_support = 2 scaffold_26 - intron 6350817-6351171 asmbl_34952 scaffold_26 - retained_intron 6350817-6351171 asmbl_34955 // Retained and Spliced Intron # retained_intron 6350832-6351171 (orient:-) max_ev_support = 2 # spliced_intron 6350832-6351171 (orient:-) max_ev_support = 2 scaffold_26 - intron 6350832-6351171 asmbl_34953 scaffold_26 - retained_intron 6350832-6351171 asmbl_34955 // Retained and Spliced Intron # retained_intron 6350865-6351156 (orient:-) max_ev_support = 2 # spliced_intron 6350865-6351156 (orient:-) max_ev_support = 2 scaffold_26 - intron 6350865-6351156 asmbl_34954 scaffold_26 - retained_intron 6350865-6351156 asmbl_34955 // Retained and Spliced Intron # retained_intron 6350865-6351295 (orient:-) max_ev_support = 2 # spliced_intron 6350865-6351295 (orient:-) max_ev_support = 1 scaffold_26 - intron 6350865-6351295 asmbl_34957 scaffold_26 - retained_intron 6350865-6351295 asmbl_34955 // Retained and Spliced Intron # retained_intron 6351209-6351295 (orient:-) max_ev_support = 1 # spliced_intron 6351209-6351295 (orient:-) max_ev_support = 2 scaffold_26 - intron 6351209-6351295 asmbl_34952,asmbl_34953,asmbl_34954 scaffold_26 - retained_intron 6351209-6351295 asmbl_34955 // Retained and Spliced Intron # retained_intron 6351209-6351389 (orient:-) max_ev_support = 1 # spliced_intron 6351209-6351389 (orient:-) max_ev_support = 2 scaffold_26 - intron 6351209-6351389 asmbl_34956 scaffold_26 - retained_intron 6351209-6351389 asmbl_34955 // Exon Skipping and Retention # skipped_exon 6703883-6704797 (orient:-) max_ev_support = 1 # retained_exon 6704291-6704368 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 6704291-6704368 asmbl_34970,asmbl_34971,asmbl_34975 scaffold_26 - intron_skips_exon 6703883-6704797 asmbl_34974 // Retained and Spliced Intron # retained_intron 6703606-6703786 (orient:-) max_ev_support = 1 # spliced_intron 6703606-6703786 (orient:-) max_ev_support = 2 scaffold_26 - intron 6703606-6703786 asmbl_34970,asmbl_34971,asmbl_34974,asmbl_34975 scaffold_26 - retained_intron 6703606-6703786 asmbl_34972,asmbl_34973 // Exon Skipping and Retention # skipped_exon 8586487-8587671 (orient:-) max_ev_support = 2 # retained_exon 8586775-8586871 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 8586775-8586871 asmbl_35006 scaffold_26 - intron_skips_exon 8586487-8587671 asmbl_35007 // Retained and Spliced Intron # retained_intron 9082921-9083032 (orient:-) max_ev_support = 3 # spliced_intron 9082921-9083032 (orient:-) max_ev_support = 2 scaffold_26 - intron 9082921-9083032 asmbl_35035,asmbl_35036,asmbl_35037,asmbl_35038 scaffold_26 - retained_intron 9082921-9083032 asmbl_35034 // Retained and Spliced Intron # retained_intron 9083212-9083394 (orient:-) max_ev_support = 1 # spliced_intron 9083212-9083394 (orient:-) max_ev_support = 2 scaffold_26 - intron 9083212-9083394 asmbl_35035,asmbl_35036,asmbl_35038 scaffold_26 - retained_intron 9083212-9083394 asmbl_35034,asmbl_35037 // Retained and Spliced Intron # retained_intron 9083573-9083738 (orient:-) max_ev_support = 2 # spliced_intron 9083573-9083738 (orient:-) max_ev_support = 1 scaffold_26 - intron 9083573-9083738 asmbl_35038 scaffold_26 - retained_intron 9083573-9083738 asmbl_35036 // Retained and Spliced Intron # retained_intron 9083581-9083738 (orient:-) max_ev_support = 2 # spliced_intron 9083581-9083738 (orient:-) max_ev_support = 2 scaffold_26 - intron 9083581-9083738 asmbl_35034,asmbl_35035 scaffold_26 - retained_intron 9083581-9083738 asmbl_35036 // Exon Skipping and Retention # skipped_exon 9089789-9091568 (orient:-) max_ev_support = 1 # retained_exon 9089966-9090704 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 9089966-9090112,9090595-9090704 asmbl_35039,asmbl_35040 scaffold_26 - retained_exons 9089966-9090034,9090595-9090704 asmbl_35042 scaffold_26 - intron_skips_exon 9089789-9091568 asmbl_35041 // Retained and Spliced Intron # retained_intron 9420301-9420411 (orient:-) max_ev_support = 2 # spliced_intron 9420301-9420411 (orient:-) max_ev_support = 1 scaffold_26 - intron 9420301-9420411 asmbl_35049 scaffold_26 - retained_intron 9420301-9420411 asmbl_35050 // Retained and Spliced Intron # retained_intron 9426206-9426291 (orient:-) max_ev_support = 1 # spliced_intron 9426206-9426291 (orient:-) max_ev_support = 1 scaffold_26 - intron 9426206-9426291 asmbl_35052 scaffold_26 - retained_intron 9426206-9426291 asmbl_35051 // Exon Skipping and Retention # skipped_exon 9834285-9834650 (orient:-) max_ev_support = 1 # retained_exon 9834406-9834498 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 9834406-9834498 asmbl_35063,asmbl_35064 scaffold_26 - intron_skips_exon 9834285-9834650 asmbl_35065 // Exon Skipping and Retention # skipped_exon 9841126-9842483 (orient:-) max_ev_support = 1 # retained_exon 9841947-9842107 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 9841947-9842107 asmbl_35066 scaffold_26 - intron_skips_exon 9841126-9842483 asmbl_35069 // Exon Skipping and Retention # skipped_exon 9840009-9841946 (orient:-) max_ev_support = 3 # retained_exon 9840738-9841125 (orient:-) max_ev_support = 2 scaffold_26 - retained_exons 9840738-9841125 asmbl_35067,asmbl_35069 scaffold_26 - intron_skips_exon 9840009-9841946 asmbl_35066 // Retained and Spliced Intron # retained_intron 9840009-9840737 (orient:-) max_ev_support = 1 # spliced_intron 9840009-9840737 (orient:-) max_ev_support = 2 scaffold_26 - intron 9840009-9840737 asmbl_35067,asmbl_35069 scaffold_26 - retained_intron 9840009-9840737 asmbl_35068 // Retained and Spliced Intron # retained_intron 9943076-9943771 (orient:-) max_ev_support = 5 # spliced_intron 9943076-9943771 (orient:-) max_ev_support = 1 scaffold_26 - intron 9943076-9943771 asmbl_35077 scaffold_26 - retained_intron 9943076-9943771 asmbl_35075,asmbl_35076 // Retained and Spliced Intron # retained_intron 10097149-10097583 (orient:-) max_ev_support = 2 # spliced_intron 10097149-10097583 (orient:-) max_ev_support = 1 scaffold_26 - intron 10097149-10097583 asmbl_35083 scaffold_26 - retained_intron 10097149-10097583 asmbl_35080,asmbl_35084 // Retained and Spliced Intron # retained_intron 10097149-10097600 (orient:-) max_ev_support = 2 # spliced_intron 10097149-10097600 (orient:-) max_ev_support = 2 scaffold_26 - intron 10097149-10097600 asmbl_35079 scaffold_26 - retained_intron 10097149-10097600 asmbl_35080,asmbl_35084 // Exon Skipping and Retention # skipped_exon 10120348-10122046 (orient:-) max_ev_support = 2 # retained_exon 10121517-10121910 (orient:-) max_ev_support = 3 scaffold_26 - retained_exons 10121517-10121616,10121765-10121910 asmbl_35086 scaffold_26 - retained_exons 10121517-10121649,10121765-10121910 asmbl_35088,asmbl_35091,asmbl_35093 scaffold_26 - intron_skips_exon 10120348-10122046 asmbl_35092 // Retained and Spliced Intron # retained_intron 10119226-10119413 (orient:-) max_ev_support = 1 # spliced_intron 10119226-10119413 (orient:-) max_ev_support = 3 scaffold_26 - intron 10119226-10119413 asmbl_35086,asmbl_35090,asmbl_35091,asmbl_35092,asmbl_35093 scaffold_26 - retained_intron 10119226-10119413 asmbl_35094 // Retained and Spliced Intron # retained_intron 426465-426666 (orient:+) max_ev_support = 1 # spliced_intron 426465-426666 (orient:+) max_ev_support = 2 scaffold_26 + intron 426465-426666 asmbl_35208,asmbl_35209,asmbl_35212 scaffold_26 + retained_intron 426465-426666 asmbl_35213 // Retained and Spliced Intron # retained_intron 903117-903347 (orient:+) max_ev_support = 3 # spliced_intron 903117-903347 (orient:+) max_ev_support = 2 scaffold_26 + intron 903117-903347 asmbl_35240 scaffold_26 + retained_intron 903117-903347 asmbl_35238,asmbl_35239 // Retained and Spliced Intron # retained_intron 902781-902905 (orient:+) max_ev_support = 2 # spliced_intron 902781-902905 (orient:+) max_ev_support = 2 scaffold_26 + intron 902781-902905 asmbl_35238,asmbl_35240 scaffold_26 + retained_intron 902781-902905 asmbl_35239,asmbl_35241 // Retained and Spliced Intron # retained_intron 902566-902678 (orient:+) max_ev_support = 2 # spliced_intron 902566-902678 (orient:+) max_ev_support = 2 scaffold_26 + intron 902566-902678 asmbl_35238,asmbl_35239,asmbl_35240 scaffold_26 + retained_intron 902566-902678 asmbl_35241 // Exon Skipping and Retention # skipped_exon 1994624-1995447 (orient:+) max_ev_support = 1 # retained_exon 1995175-1995221 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1995175-1995221 asmbl_35258 scaffold_26 + intron_skips_exon 1994624-1995447 asmbl_35260 // Exon Skipping and Retention # skipped_exon 1994935-1997416 (orient:+) max_ev_support = 1 # retained_exon 1995175-1995532 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1995175-1995221,1995448-1995532 asmbl_35258 scaffold_26 + intron_skips_exon 1994935-1997416 asmbl_35259 // Exon Skipping and Retention # skipped_exon 1994012-1995174 (orient:+) max_ev_support = 1 # retained_exon 1994577-1994934 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 1994577-1994623,1994850-1994934 asmbl_35259 scaffold_26 + intron_skips_exon 1994012-1995174 asmbl_35258 // Retained and Spliced Intron # retained_intron 2253736-2255266 (orient:+) max_ev_support = 1 # spliced_intron 2253736-2255266 (orient:+) max_ev_support = 2 scaffold_26 + intron 2253736-2255266 asmbl_35265,asmbl_35269 scaffold_26 + retained_intron 2253736-2255266 asmbl_35268 // Retained and Spliced Intron # retained_intron 2261353-2261420 (orient:+) max_ev_support = 1 # spliced_intron 2261353-2261420 (orient:+) max_ev_support = 1 scaffold_26 + intron 2261353-2261420 asmbl_35270 scaffold_26 + retained_intron 2261353-2261420 asmbl_35271 // Retained and Spliced Intron # retained_intron 2264373-2264869 (orient:+) max_ev_support = 2 # spliced_intron 2264373-2264869 (orient:+) max_ev_support = 2 scaffold_26 + intron 2264373-2264869 asmbl_35273 scaffold_26 + retained_intron 2264373-2264869 asmbl_35272 // Exon Skipping and Retention # skipped_exon 2781259-2782166 (orient:+) max_ev_support = 1 # retained_exon 2781939-2781953 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 2781939-2781953 asmbl_35285 scaffold_26 + intron_skips_exon 2781259-2782166 asmbl_35286 // Retained and Spliced Intron # retained_intron 3361212-3361377 (orient:+) max_ev_support = 1 # spliced_intron 3361212-3361377 (orient:+) max_ev_support = 2 scaffold_26 + intron 3361212-3361377 asmbl_35304 scaffold_26 + retained_intron 3361212-3361377 asmbl_35306 // Retained and Spliced Intron # retained_intron 3361453-3361585 (orient:+) max_ev_support = 1 # spliced_intron 3361453-3361585 (orient:+) max_ev_support = 2 scaffold_26 + intron 3361453-3361585 asmbl_35304 scaffold_26 + retained_intron 3361453-3361585 asmbl_35306 // Retained and Spliced Intron # retained_intron 3432400-3432532 (orient:+) max_ev_support = 1 # spliced_intron 3432400-3432532 (orient:+) max_ev_support = 2 scaffold_26 + intron 3432400-3432532 asmbl_35309,asmbl_35310,asmbl_35311 scaffold_26 + retained_intron 3432400-3432532 asmbl_35312 // Retained and Spliced Intron # retained_intron 3562965-3563144 (orient:+) max_ev_support = 2 # spliced_intron 3562965-3563144 (orient:+) max_ev_support = 2 scaffold_26 + intron 3562965-3563144 asmbl_35322 scaffold_26 + retained_intron 3562965-3563144 asmbl_35324,asmbl_35325 // Retained and Spliced Intron # retained_intron 3563037-3563144 (orient:+) max_ev_support = 2 # spliced_intron 3563037-3563144 (orient:+) max_ev_support = 2 scaffold_26 + intron 3563037-3563144 asmbl_35321,asmbl_35323,asmbl_35326 scaffold_26 + retained_intron 3563037-3563144 asmbl_35324,asmbl_35325 // Retained and Spliced Intron # retained_intron 3563207-3563305 (orient:+) max_ev_support = 2 # spliced_intron 3563207-3563305 (orient:+) max_ev_support = 2 scaffold_26 + intron 3563207-3563305 asmbl_35321,asmbl_35322,asmbl_35323,asmbl_35324,asmbl_35326 scaffold_26 + retained_intron 3563207-3563305 asmbl_35325 // Retained and Spliced Intron # retained_intron 3573675-3573769 (orient:+) max_ev_support = 1 # spliced_intron 3573675-3573769 (orient:+) max_ev_support = 2 scaffold_26 + intron 3573675-3573769 asmbl_35327 scaffold_26 + retained_intron 3573675-3573769 asmbl_35328 // Retained and Spliced Intron # retained_intron 3591176-3591371 (orient:+) max_ev_support = 1 # spliced_intron 3591176-3591371 (orient:+) max_ev_support = 1 scaffold_26 + intron 3591176-3591371 asmbl_35330 scaffold_26 + retained_intron 3591176-3591371 asmbl_35331 // Retained and Spliced Intron # retained_intron 3623024-3623045 (orient:+) max_ev_support = 1 # spliced_intron 3623024-3623045 (orient:+) max_ev_support = 1 scaffold_26 + intron 3623024-3623045 asmbl_35334 scaffold_26 + retained_intron 3623024-3623045 asmbl_35335 // Exon Skipping and Retention # skipped_exon 3672079-3673128 (orient:+) max_ev_support = 1 # retained_exon 3672349-3672378 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 3672349-3672378 asmbl_35340,asmbl_35343,asmbl_35344 scaffold_26 + intron_skips_exon 3672079-3673128 asmbl_35342 // Retained and Spliced Intron # retained_intron 3673200-3673300 (orient:+) max_ev_support = 2 # spliced_intron 3673200-3673300 (orient:+) max_ev_support = 2 scaffold_26 + intron 3673200-3673300 asmbl_35340,asmbl_35342,asmbl_35343,asmbl_35344 scaffold_26 + retained_intron 3673200-3673300 asmbl_35341 // Retained and Spliced Intron # retained_intron 4110627-4110718 (orient:+) max_ev_support = 1 # spliced_intron 4110627-4110718 (orient:+) max_ev_support = 2 scaffold_26 + intron 4110627-4110718 asmbl_35386 scaffold_26 + retained_intron 4110627-4110718 asmbl_35387,asmbl_35388 // Retained and Spliced Intron # retained_intron 4109409-4109599 (orient:+) max_ev_support = 1 # spliced_intron 4109409-4109599 (orient:+) max_ev_support = 2 scaffold_26 + intron 4109409-4109599 asmbl_35386,asmbl_35387 scaffold_26 + retained_intron 4109409-4109599 asmbl_35388 // Exon Skipping and Retention # skipped_exon 4142306-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142408-4142441 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142408-4142441 asmbl_35399 scaffold_26 + intron_skips_exon 4142306-4142563 asmbl_35400 // Exon Skipping and Retention # skipped_exon 4141796-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142408-4142441 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142408-4142441 asmbl_35399 scaffold_26 + intron_skips_exon 4141796-4142563 asmbl_35401 // Exon Skipping and Retention # skipped_exon 4141762-4142407 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_35400 scaffold_26 + intron_skips_exon 4141762-4142407 asmbl_35399 // Exon Skipping and Retention # skipped_exon 4141796-4142563 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_35400 scaffold_26 + intron_skips_exon 4141796-4142563 asmbl_35401 // Exon Skipping and Retention # skipped_exon 4141762-4142373 (orient:+) max_ev_support = 1 # retained_exon 4142272-4142305 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 4142272-4142305 asmbl_35400 scaffold_26 + intron_skips_exon 4141762-4142373 asmbl_35402 // Retained and Spliced Intron # retained_intron 4155586-4155680 (orient:+) max_ev_support = 1 # spliced_intron 4155586-4155680 (orient:+) max_ev_support = 2 scaffold_26 + intron 4155586-4155680 asmbl_35405 scaffold_26 + retained_intron 4155586-4155680 asmbl_35406 // Retained and Spliced Intron # retained_intron 4440010-4440139 (orient:+) max_ev_support = 2 # spliced_intron 4440010-4440139 (orient:+) max_ev_support = 1 scaffold_26 + intron 4440010-4440139 asmbl_35430 scaffold_26 + retained_intron 4440010-4440139 asmbl_35428,asmbl_35429 // Retained and Spliced Intron # retained_intron 4441929-4442021 (orient:+) max_ev_support = 3 # spliced_intron 4441929-4442021 (orient:+) max_ev_support = 2 scaffold_26 + intron 4441929-4442021 asmbl_35429,asmbl_35430 scaffold_26 + retained_intron 4441929-4442021 asmbl_35428 // Retained and Spliced Intron # retained_intron 5045661-5045778 (orient:+) max_ev_support = 1 # spliced_intron 5045661-5045778 (orient:+) max_ev_support = 2 scaffold_26 + intron 5045661-5045778 asmbl_35463,asmbl_35464,asmbl_35470,asmbl_35476,asmbl_35478,asmbl_35481 scaffold_26 + retained_intron 5045661-5045778 asmbl_35466 // Retained and Spliced Intron # retained_intron 5045239-5045524 (orient:+) max_ev_support = 1 # spliced_intron 5045239-5045524 (orient:+) max_ev_support = 2 scaffold_26 + intron 5045239-5045524 asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35470,asmbl_35476,asmbl_35478,asmbl_35481 scaffold_26 + retained_intron 5045239-5045524 asmbl_35468,asmbl_35480 // Retained and Spliced Intron # retained_intron 5044652-5044757 (orient:+) max_ev_support = 1 # spliced_intron 5044652-5044757 (orient:+) max_ev_support = 2 scaffold_26 + intron 5044652-5044757 asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35470,asmbl_35476,asmbl_35480,asmbl_35481 scaffold_26 + retained_intron 5044652-5044757 asmbl_35469,asmbl_35479 // Retained and Spliced Intron # retained_intron 5042836-5042939 (orient:+) max_ev_support = 1 # spliced_intron 5042836-5042939 (orient:+) max_ev_support = 2 scaffold_26 + intron 5042836-5042939 asmbl_35463,asmbl_35464,asmbl_35465,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35479,asmbl_35480,asmbl_35481 scaffold_26 + retained_intron 5042836-5042939 asmbl_35470 // Retained and Spliced Intron # retained_intron 5043870-5044023 (orient:+) max_ev_support = 2 # spliced_intron 5043870-5044023 (orient:+) max_ev_support = 2 scaffold_26 + intron 5043870-5044023 asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35479,asmbl_35480,asmbl_35481 scaffold_26 + retained_intron 5043870-5044023 asmbl_35470,asmbl_35476 // Retained and Spliced Intron # retained_intron 5043449-5043773 (orient:+) max_ev_support = 2 # spliced_intron 5043449-5043773 (orient:+) max_ev_support = 2 scaffold_26 + intron 5043449-5043773 asmbl_35463,asmbl_35464,asmbl_35466,asmbl_35468,asmbl_35469,asmbl_35470,asmbl_35476,asmbl_35479,asmbl_35480,asmbl_35481 scaffold_26 + retained_intron 5043449-5043773 asmbl_35471 // Retained and Spliced Intron # retained_intron 5040641-5040729 (orient:+) max_ev_support = 1 # spliced_intron 5040641-5040729 (orient:+) max_ev_support = 4 scaffold_26 + intron 5040641-5040729 asmbl_35463,asmbl_35464,asmbl_35465,asmbl_35466,asmbl_35467,asmbl_35468,asmbl_35469 scaffold_26 + retained_intron 5040641-5040729 asmbl_35479,asmbl_35480,asmbl_35481 // Retained and Spliced Intron # retained_intron 5294667-5294755 (orient:+) max_ev_support = 1 # spliced_intron 5294667-5294755 (orient:+) max_ev_support = 3 scaffold_26 + intron 5294667-5294755 asmbl_35500 scaffold_26 + retained_intron 5294667-5294755 asmbl_35501 // Retained and Spliced Intron # retained_intron 5483268-5483396 (orient:+) max_ev_support = 2 # spliced_intron 5483268-5483396 (orient:+) max_ev_support = 1 scaffold_26 + intron 5483268-5483396 asmbl_35520,asmbl_35521,asmbl_35522,asmbl_35523,asmbl_35524 scaffold_26 + retained_intron 5483268-5483396 asmbl_35519 // Retained and Spliced Intron # retained_intron 5487654-5488597 (orient:+) max_ev_support = 4 # spliced_intron 5487654-5488597 (orient:+) max_ev_support = 3 scaffold_26 + intron 5487654-5488597 asmbl_35526,asmbl_35528 scaffold_26 + retained_intron 5487654-5488597 asmbl_35525,asmbl_35527 // Retained and Spliced Intron # retained_intron 5486047-5486534 (orient:+) max_ev_support = 2 # spliced_intron 5486047-5486534 (orient:+) max_ev_support = 3 scaffold_26 + intron 5486047-5486534 asmbl_35526 scaffold_26 + retained_intron 5486047-5486534 asmbl_35527 // Retained and Spliced Intron # retained_intron 5486047-5487189 (orient:+) max_ev_support = 3 # spliced_intron 5486047-5487189 (orient:+) max_ev_support = 4 scaffold_26 + intron 5486047-5487189 asmbl_35525,asmbl_35528 scaffold_26 + retained_intron 5486047-5487189 asmbl_35527 // Retained and Spliced Intron # retained_intron 5501908-5502171 (orient:+) max_ev_support = 2 # spliced_intron 5501908-5502171 (orient:+) max_ev_support = 2 scaffold_26 + intron 5501908-5502171 asmbl_35534 scaffold_26 + retained_intron 5501908-5502171 asmbl_35535 // Retained and Spliced Intron # retained_intron 5524354-5524425 (orient:+) max_ev_support = 1 # spliced_intron 5524354-5524425 (orient:+) max_ev_support = 1 scaffold_26 + intron 5524354-5524425 asmbl_35542 scaffold_26 + retained_intron 5524354-5524425 asmbl_35541 // Retained and Spliced Intron # retained_intron 5562155-5562324 (orient:+) max_ev_support = 1 # spliced_intron 5562155-5562324 (orient:+) max_ev_support = 1 scaffold_26 + intron 5562155-5562324 asmbl_35548 scaffold_26 + retained_intron 5562155-5562324 asmbl_35547 // Retained and Spliced Intron # retained_intron 5561589-5561755 (orient:+) max_ev_support = 2 # spliced_intron 5561589-5561755 (orient:+) max_ev_support = 2 scaffold_26 + intron 5561589-5561755 asmbl_35551 scaffold_26 + retained_intron 5561589-5561755 asmbl_35552,asmbl_35555 // Exon Skipping and Retention # skipped_exon 5744770-5745955 (orient:+) max_ev_support = 2 # retained_exon 5745760-5745849 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 5745760-5745849 asmbl_35559,asmbl_35561 scaffold_26 + intron_skips_exon 5744770-5745955 asmbl_35558,asmbl_35560,asmbl_35562 // Retained and Spliced Intron # retained_intron 5746449-5746583 (orient:+) max_ev_support = 2 # spliced_intron 5746449-5746583 (orient:+) max_ev_support = 2 scaffold_26 + intron 5746449-5746583 asmbl_35558,asmbl_35559,asmbl_35561,asmbl_35562 scaffold_26 + retained_intron 5746449-5746583 asmbl_35560 // Retained and Spliced Intron # retained_intron 5755074-5756532 (orient:+) max_ev_support = 2 # spliced_intron 5755074-5756532 (orient:+) max_ev_support = 1 scaffold_26 + intron 5755074-5756532 asmbl_35565 scaffold_26 + retained_intron 5755074-5756532 asmbl_35564 // Exon Skipping and Retention # skipped_exon 5890248-5891473 (orient:+) max_ev_support = 1 # retained_exon 5890349-5890963 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 5890349-5890422,5890870-5890963 asmbl_35578 scaffold_26 + intron_skips_exon 5890248-5891473 asmbl_35580 // Retained and Spliced Intron # retained_intron 5891547-5891797 (orient:+) max_ev_support = 2 # spliced_intron 5891547-5891797 (orient:+) max_ev_support = 2 scaffold_26 + intron 5891547-5891797 asmbl_35578,asmbl_35580 scaffold_26 + retained_intron 5891547-5891797 asmbl_35579 // Exon Skipping and Retention # skipped_exon 5983273-5983512 (orient:+) max_ev_support = 2 # retained_exon 5983388-5983402 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 5983388-5983402 asmbl_35590,asmbl_35591 scaffold_26 + intron_skips_exon 5983273-5983512 asmbl_35587,asmbl_35588 // Retained and Spliced Intron # retained_intron 6660908-6661271 (orient:+) max_ev_support = 1 # spliced_intron 6660908-6661271 (orient:+) max_ev_support = 2 scaffold_26 + intron 6660908-6661271 asmbl_35623,asmbl_35625,asmbl_35626 scaffold_26 + retained_intron 6660908-6661271 asmbl_35624 // Retained and Spliced Intron # retained_intron 6656037-6656136 (orient:+) max_ev_support = 1 # spliced_intron 6656037-6656136 (orient:+) max_ev_support = 2 scaffold_26 + intron 6656037-6656136 asmbl_35623,asmbl_35624,asmbl_35626 scaffold_26 + retained_intron 6656037-6656136 asmbl_35625 // Retained and Spliced Intron # retained_intron 6659499-6659582 (orient:+) max_ev_support = 1 # spliced_intron 6659499-6659582 (orient:+) max_ev_support = 2 scaffold_26 + intron 6659499-6659582 asmbl_35623,asmbl_35624,asmbl_35625 scaffold_26 + retained_intron 6659499-6659582 asmbl_35626 // Retained and Spliced Intron # retained_intron 6663635-6663720 (orient:+) max_ev_support = 3 # spliced_intron 6663635-6663720 (orient:+) max_ev_support = 2 scaffold_26 + intron 6663635-6663720 asmbl_35627,asmbl_35629 scaffold_26 + retained_intron 6663635-6663720 asmbl_35628 // Retained and Spliced Intron # retained_intron 6663772-6663872 (orient:+) max_ev_support = 3 # spliced_intron 6663772-6663872 (orient:+) max_ev_support = 2 scaffold_26 + intron 6663772-6663872 asmbl_35627,asmbl_35629 scaffold_26 + retained_intron 6663772-6663872 asmbl_35628 // Retained and Spliced Intron # retained_intron 6721964-6722044 (orient:+) max_ev_support = 2 # spliced_intron 6721964-6722044 (orient:+) max_ev_support = 2 scaffold_26 + intron 6721964-6722044 asmbl_35633 scaffold_26 + retained_intron 6721964-6722044 asmbl_35634 // Retained and Spliced Intron # retained_intron 6721964-6722078 (orient:+) max_ev_support = 2 # spliced_intron 6721964-6722078 (orient:+) max_ev_support = 1 scaffold_26 + intron 6721964-6722078 asmbl_35635 scaffold_26 + retained_intron 6721964-6722078 asmbl_35634 // Retained and Spliced Intron # retained_intron 7774100-7774213 (orient:+) max_ev_support = 2 # spliced_intron 7774100-7774213 (orient:+) max_ev_support = 1 scaffold_26 + intron 7774100-7774213 asmbl_35672 scaffold_26 + retained_intron 7774100-7774213 asmbl_35671 // Retained and Spliced Intron # retained_intron 7900294-7900429 (orient:+) max_ev_support = 2 # spliced_intron 7900294-7900429 (orient:+) max_ev_support = 1 scaffold_26 + intron 7900294-7900429 asmbl_35680,asmbl_35681 scaffold_26 + retained_intron 7900294-7900429 asmbl_35679 // Retained and Spliced Intron # retained_intron 7900944-7901028 (orient:+) max_ev_support = 1 # spliced_intron 7900944-7901028 (orient:+) max_ev_support = 2 scaffold_26 + intron 7900944-7901028 asmbl_35679,asmbl_35681 scaffold_26 + retained_intron 7900944-7901028 asmbl_35680 // Retained and Spliced Intron # retained_intron 8995725-8995801 (orient:+) max_ev_support = 1 # spliced_intron 8995725-8995801 (orient:+) max_ev_support = 2 scaffold_26 + intron 8995725-8995801 asmbl_35716 scaffold_26 + retained_intron 8995725-8995801 asmbl_35718 // Retained and Spliced Intron # retained_intron 9029889-9029987 (orient:+) max_ev_support = 2 # spliced_intron 9029889-9029987 (orient:+) max_ev_support = 2 scaffold_26 + intron 9029889-9029987 asmbl_35719 scaffold_26 + retained_intron 9029889-9029987 asmbl_35720 // Retained and Spliced Intron # retained_intron 9044430-9044639 (orient:+) max_ev_support = 2 # spliced_intron 9044430-9044639 (orient:+) max_ev_support = 3 scaffold_26 + intron 9044430-9044639 asmbl_35724,asmbl_35727 scaffold_26 + retained_intron 9044430-9044639 asmbl_35725 // Retained and Spliced Intron # retained_intron 9315311-9315414 (orient:+) max_ev_support = 1 # spliced_intron 9315311-9315414 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315311-9315414 asmbl_35739,asmbl_35741,asmbl_35746 scaffold_26 + retained_intron 9315311-9315414 asmbl_35737,asmbl_35738,asmbl_35740 // Retained and Spliced Intron # retained_intron 9316247-9316445 (orient:+) max_ev_support = 1 # spliced_intron 9316247-9316445 (orient:+) max_ev_support = 2 scaffold_26 + intron 9316247-9316445 asmbl_35739,asmbl_35741,asmbl_35742,asmbl_35746 scaffold_26 + retained_intron 9316247-9316445 asmbl_35737,asmbl_35738,asmbl_35740,asmbl_35743 // Retained and Spliced Intron # retained_intron 9316596-9316754 (orient:+) max_ev_support = 1 # spliced_intron 9316596-9316754 (orient:+) max_ev_support = 2 scaffold_26 + intron 9316596-9316754 asmbl_35739,asmbl_35741,asmbl_35743,asmbl_35746 scaffold_26 + retained_intron 9316596-9316754 asmbl_35737,asmbl_35738,asmbl_35740,asmbl_35742 // Retained and Spliced Intron # retained_intron 9314784-9314931 (orient:+) max_ev_support = 1 # spliced_intron 9314784-9314931 (orient:+) max_ev_support = 2 scaffold_26 + intron 9314784-9314931 asmbl_35737,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746 scaffold_26 + retained_intron 9314784-9314931 asmbl_35738 // Retained and Spliced Intron # retained_intron 9315672-9315826 (orient:+) max_ev_support = 2 # spliced_intron 9315672-9315826 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315672-9315826 asmbl_35737,asmbl_35738,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746 scaffold_26 + retained_intron 9315672-9315826 asmbl_35742,asmbl_35743,asmbl_35745 // Retained and Spliced Intron # retained_intron 9315862-9315995 (orient:+) max_ev_support = 2 # spliced_intron 9315862-9315995 (orient:+) max_ev_support = 2 scaffold_26 + intron 9315862-9315995 asmbl_35737,asmbl_35738,asmbl_35739,asmbl_35740,asmbl_35741,asmbl_35746 scaffold_26 + retained_intron 9315862-9315995 asmbl_35742,asmbl_35743,asmbl_35745 // Retained and Spliced Intron # retained_intron 9514352-9514514 (orient:+) max_ev_support = 1 # spliced_intron 9514352-9514514 (orient:+) max_ev_support = 1 scaffold_26 + intron 9514352-9514514 asmbl_35761 scaffold_26 + retained_intron 9514352-9514514 asmbl_35760 // Exon Skipping and Retention # skipped_exon 9607417-9610401 (orient:+) max_ev_support = 1 # retained_exon 9608494-9609701 (orient:+) max_ev_support = 3 scaffold_26 + retained_exons 9608494-9608597,9609222-9609346,9609504-9609701 asmbl_35765 scaffold_26 + intron_skips_exon 9607417-9610401 asmbl_35769 // Retained and Spliced Intron # retained_intron 9772322-9772792 (orient:+) max_ev_support = 4 # spliced_intron 9772322-9772792 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772322-9772792 asmbl_35785,asmbl_35786,asmbl_35790 scaffold_26 + retained_intron 9772322-9772792 asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781 // Retained and Spliced Intron # retained_intron 9772322-9772904 (orient:+) max_ev_support = 4 # spliced_intron 9772322-9772904 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772322-9772904 asmbl_35779,asmbl_35782,asmbl_35784,asmbl_35788 scaffold_26 + retained_intron 9772322-9772904 asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781 // Retained and Spliced Intron # retained_intron 9773422-9774174 (orient:+) max_ev_support = 3 # spliced_intron 9773422-9774174 (orient:+) max_ev_support = 1 scaffold_26 + intron 9773422-9774174 asmbl_35780,asmbl_35786 scaffold_26 + retained_intron 9773422-9774174 asmbl_35777,asmbl_35779,asmbl_35782,asmbl_35783,asmbl_35784,asmbl_35785 // Retained and Spliced Intron # retained_intron 9773422-9774402 (orient:+) max_ev_support = 5 # spliced_intron 9773422-9774402 (orient:+) max_ev_support = 2 scaffold_26 + intron 9773422-9774402 asmbl_35778,asmbl_35781,asmbl_35787,asmbl_35788,asmbl_35790 scaffold_26 + retained_intron 9773422-9774402 asmbl_35777,asmbl_35779 // Retained and Spliced Intron # retained_intron 9774294-9774402 (orient:+) max_ev_support = 4 # spliced_intron 9774294-9774402 (orient:+) max_ev_support = 1 scaffold_26 + intron 9774294-9774402 asmbl_35786 scaffold_26 + retained_intron 9774294-9774402 asmbl_35777,asmbl_35779,asmbl_35780 // Retained and Spliced Intron # retained_intron 9774454-9775593 (orient:+) max_ev_support = 3 # spliced_intron 9774454-9775593 (orient:+) max_ev_support = 1 scaffold_26 + intron 9774454-9775593 asmbl_35781,asmbl_35786,asmbl_35788,asmbl_35790 scaffold_26 + retained_intron 9774454-9775593 asmbl_35777,asmbl_35778,asmbl_35779,asmbl_35780,asmbl_35787,asmbl_35789 // Retained and Spliced Intron # retained_intron 9772970-9773112 (orient:+) max_ev_support = 2 # spliced_intron 9772970-9773112 (orient:+) max_ev_support = 2 scaffold_26 + intron 9772970-9773112 asmbl_35777,asmbl_35779,asmbl_35782,asmbl_35787,asmbl_35788,asmbl_35790 scaffold_26 + retained_intron 9772970-9773112 asmbl_35778,asmbl_35780,asmbl_35781,asmbl_35783,asmbl_35784,asmbl_35785,asmbl_35786 // Retained and Spliced Intron # retained_intron 9775764-9775840 (orient:+) max_ev_support = 3 # spliced_intron 9775764-9775840 (orient:+) max_ev_support = 1 scaffold_26 + intron 9775764-9775840 asmbl_35777,asmbl_35780 scaffold_26 + retained_intron 9775764-9775840 asmbl_35778,asmbl_35779,asmbl_35781,asmbl_35786,asmbl_35788 // Retained and Spliced Intron # retained_intron 9775764-9775968 (orient:+) max_ev_support = 3 # spliced_intron 9775764-9775968 (orient:+) max_ev_support = 1 scaffold_26 + intron 9775764-9775968 asmbl_35787,asmbl_35789,asmbl_35790 scaffold_26 + retained_intron 9775764-9775968 asmbl_35778,asmbl_35779,asmbl_35781,asmbl_35786,asmbl_35788 // Retained and Spliced Intron # retained_intron 9773180-9773315 (orient:+) max_ev_support = 1 # spliced_intron 9773180-9773315 (orient:+) max_ev_support = 2 scaffold_26 + intron 9773180-9773315 asmbl_35777,asmbl_35778,asmbl_35780,asmbl_35781,asmbl_35782,asmbl_35784,asmbl_35785,asmbl_35786,asmbl_35787,asmbl_35788,asmbl_35790 scaffold_26 + retained_intron 9773180-9773315 asmbl_35779,asmbl_35783 // Exon Skipping and Retention # skipped_exon 9773422-9774402 (orient:+) max_ev_support = 2 # retained_exon 9774175-9774293 (orient:+) max_ev_support = 1 scaffold_26 + retained_exons 9774175-9774293 asmbl_35786 scaffold_26 + intron_skips_exon 9773422-9774402 asmbl_35778,asmbl_35781,asmbl_35787,asmbl_35788,asmbl_35790 // Retained and Spliced Intron # retained_intron 9781574-9781736 (orient:+) max_ev_support = 2 # spliced_intron 9781574-9781736 (orient:+) max_ev_support = 3 scaffold_26 + intron 9781574-9781736 asmbl_35791 scaffold_26 + retained_intron 9781574-9781736 asmbl_35792 // Retained and Spliced Intron # retained_intron 9781848-9782129 (orient:+) max_ev_support = 2 # spliced_intron 9781848-9782129 (orient:+) max_ev_support = 3 scaffold_26 + intron 9781848-9782129 asmbl_35791 scaffold_26 + retained_intron 9781848-9782129 asmbl_35792 // Exon Skipping and Retention # skipped_exon 9829475-9830981 (orient:+) max_ev_support = 1 # retained_exon 9829802-9829918 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 9829802-9829918 asmbl_35797 scaffold_26 + intron_skips_exon 9829475-9830981 asmbl_35798 // Exon Skipping and Retention # skipped_exon 9843220-9843548 (orient:+) max_ev_support = 1 # retained_exon 9843315-9843402 (orient:+) max_ev_support = 2 scaffold_26 + retained_exons 9843315-9843402 asmbl_35801,asmbl_35806,asmbl_35807,asmbl_35810,asmbl_35812,asmbl_35814 scaffold_26 + intron_skips_exon 9843220-9843548 asmbl_35811,asmbl_35813,asmbl_35816 // Retained and Spliced Intron # retained_intron 9844185-9844437 (orient:+) max_ev_support = 2 # spliced_intron 9844185-9844437 (orient:+) max_ev_support = 1 scaffold_26 + intron 9844185-9844437 asmbl_35806,asmbl_35812,asmbl_35816 scaffold_26 + retained_intron 9844185-9844437 asmbl_35801,asmbl_35804,asmbl_35805,asmbl_35807,asmbl_35808,asmbl_35809,asmbl_35810,asmbl_35811,asmbl_35813,asmbl_35814,asmbl_35815,asmbl_35817 // Retained and Spliced Intron # retained_intron 9853517-9853606 (orient:+) max_ev_support = 2 # spliced_intron 9853517-9853606 (orient:+) max_ev_support = 1 scaffold_26 + intron 9853517-9853606 asmbl_35804,asmbl_35807,asmbl_35808,asmbl_35810,asmbl_35812,asmbl_35813,asmbl_35815,asmbl_35816 scaffold_26 + retained_intron 9853517-9853606 asmbl_35801,asmbl_35805,asmbl_35806,asmbl_35809,asmbl_35811,asmbl_35814,asmbl_35817 // Retained and Spliced Intron # retained_intron 9843220-9843299 (orient:+) max_ev_support = 1 # spliced_intron 9843220-9843299 (orient:+) max_ev_support = 1 scaffold_26 + intron 9843220-9843299 asmbl_35804,asmbl_35809 scaffold_26 + retained_intron 9843220-9843299 asmbl_35805 // Retained and Spliced Intron # retained_intron 9843220-9843314 (orient:+) max_ev_support = 1 # spliced_intron 9843220-9843314 (orient:+) max_ev_support = 2 scaffold_26 + intron 9843220-9843314 asmbl_35801,asmbl_35806,asmbl_35807,asmbl_35810,asmbl_35812,asmbl_35814 scaffold_26 + retained_intron 9843220-9843314 asmbl_35805 // Retained and Spliced Intron # retained_intron 9843220-9843385 (orient:+) max_ev_support = 1 # spliced_intron 9843220-9843385 (orient:+) max_ev_support = 1 scaffold_26 + intron 9843220-9843385 asmbl_35808,asmbl_35815,asmbl_35817 scaffold_26 + retained_intron 9843220-9843385 asmbl_35805 // Retained and Spliced Intron # retained_intron 294852-294971 (orient:+) max_ev_support = 3 # spliced_intron 294852-294971 (orient:+) max_ev_support = 3 scaffold_27 + intron 294852-294971 asmbl_35908 scaffold_27 + retained_intron 294852-294971 asmbl_35907 // Exon Skipping and Retention # skipped_exon 616486-616959 (orient:+) max_ev_support = 1 # retained_exon 616619-616723 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 616619-616723 asmbl_35923 scaffold_27 + intron_skips_exon 616486-616959 asmbl_35924 // Exon Skipping and Retention # skipped_exon 973032-975196 (orient:+) max_ev_support = 2 # retained_exon 973582-975035 (orient:+) max_ev_support = 3 scaffold_27 + retained_exons 973582-973720,974848-975035 asmbl_35931,asmbl_35936 scaffold_27 + intron_skips_exon 973032-975196 asmbl_35937 // Retained and Spliced Intron # retained_intron 975659-975913 (orient:+) max_ev_support = 1 # spliced_intron 975659-975913 (orient:+) max_ev_support = 3 scaffold_27 + intron 975659-975913 asmbl_35931,asmbl_35932,asmbl_35933,asmbl_35936,asmbl_35937 scaffold_27 + retained_intron 975659-975913 asmbl_35938 // Retained and Spliced Intron # retained_intron 1419227-1419252 (orient:+) max_ev_support = 1 # spliced_intron 1419227-1419252 (orient:+) max_ev_support = 1 scaffold_27 + intron 1419227-1419252 asmbl_35964,asmbl_35965 scaffold_27 + retained_intron 1419227-1419252 asmbl_35963,asmbl_35966 // Retained and Spliced Intron # retained_intron 1551570-1551779 (orient:+) max_ev_support = 1 # spliced_intron 1551570-1551779 (orient:+) max_ev_support = 3 scaffold_27 + intron 1551570-1551779 asmbl_35981,asmbl_35984,asmbl_35986 scaffold_27 + retained_intron 1551570-1551779 asmbl_35987 // Exon Skipping and Retention # skipped_exon 1774172-1774783 (orient:+) max_ev_support = 1 # retained_exon 1774274-1774539 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 1774274-1774355,1774456-1774539 asmbl_35996,asmbl_35998 scaffold_27 + intron_skips_exon 1774172-1774783 asmbl_35997 // Exon Skipping and Retention # skipped_exon 1774540-1775914 (orient:+) max_ev_support = 2 # retained_exon 1774784-1775049 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 1774784-1774865,1774966-1775049 asmbl_35997 scaffold_27 + intron_skips_exon 1774540-1775914 asmbl_35996,asmbl_35998 // Exon Skipping and Retention # skipped_exon 1986699-1987064 (orient:+) max_ev_support = 2 # retained_exon 1986906-1986978 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 1986906-1986978 asmbl_36019,asmbl_36021 scaffold_27 + intron_skips_exon 1986699-1987064 asmbl_36020 // Retained and Spliced Intron # retained_intron 2047111-2047352 (orient:+) max_ev_support = 1 # spliced_intron 2047111-2047352 (orient:+) max_ev_support = 2 scaffold_27 + intron 2047111-2047352 asmbl_36023 scaffold_27 + retained_intron 2047111-2047352 asmbl_36024 // Retained and Spliced Intron # retained_intron 2049473-2049594 (orient:+) max_ev_support = 1 # spliced_intron 2049473-2049594 (orient:+) max_ev_support = 2 scaffold_27 + intron 2049473-2049594 asmbl_36023,asmbl_36024 scaffold_27 + retained_intron 2049473-2049594 asmbl_36025 // Retained and Spliced Intron # retained_intron 2436344-2436368 (orient:+) max_ev_support = 1 # spliced_intron 2436344-2436368 (orient:+) max_ev_support = 1 scaffold_27 + intron 2436344-2436368 asmbl_36045 scaffold_27 + retained_intron 2436344-2436368 asmbl_36046 // Retained and Spliced Intron # retained_intron 2436344-2436418 (orient:+) max_ev_support = 1 # spliced_intron 2436344-2436418 (orient:+) max_ev_support = 1 scaffold_27 + intron 2436344-2436418 asmbl_36044 scaffold_27 + retained_intron 2436344-2436418 asmbl_36046 // Retained and Spliced Intron # retained_intron 2536912-2537126 (orient:+) max_ev_support = 1 # spliced_intron 2536912-2537126 (orient:+) max_ev_support = 2 scaffold_27 + intron 2536912-2537126 asmbl_36047 scaffold_27 + retained_intron 2536912-2537126 asmbl_36048 // Exon Skipping and Retention # skipped_exon 2641245-2642085 (orient:+) max_ev_support = 2 # retained_exon 2641397-2641510 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2641397-2641510 asmbl_36057 scaffold_27 + intron_skips_exon 2641245-2642085 asmbl_36056 // Retained and Spliced Intron # retained_intron 2786649-2786780 (orient:+) max_ev_support = 2 # spliced_intron 2786649-2786780 (orient:+) max_ev_support = 2 scaffold_27 + intron 2786649-2786780 asmbl_36063,asmbl_36064,asmbl_36065 scaffold_27 + retained_intron 2786649-2786780 asmbl_36067 // Retained and Spliced Intron # retained_intron 2792841-2792968 (orient:+) max_ev_support = 1 # spliced_intron 2792841-2792968 (orient:+) max_ev_support = 1 scaffold_27 + intron 2792841-2792968 asmbl_36071,asmbl_36072,asmbl_36073 scaffold_27 + retained_intron 2792841-2792968 asmbl_36068 // Retained and Spliced Intron # retained_intron 2793632-2795233 (orient:+) max_ev_support = 3 # spliced_intron 2793632-2795233 (orient:+) max_ev_support = 1 scaffold_27 + intron 2793632-2795233 asmbl_36071,asmbl_36072,asmbl_36073 scaffold_27 + retained_intron 2793632-2795233 asmbl_36068 // Exon Skipping and Retention # skipped_exon 2815397-2816799 (orient:+) max_ev_support = 2 # retained_exon 2816041-2816073 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2816041-2816073 asmbl_36075,asmbl_36079 scaffold_27 + intron_skips_exon 2815397-2816799 asmbl_36074,asmbl_36080,asmbl_36081,asmbl_36082 // Retained and Spliced Intron # retained_intron 2816855-2816968 (orient:+) max_ev_support = 2 # spliced_intron 2816855-2816968 (orient:+) max_ev_support = 2 scaffold_27 + intron 2816855-2816968 asmbl_36074,asmbl_36075,asmbl_36079,asmbl_36080,asmbl_36081,asmbl_36082 scaffold_27 + retained_intron 2816855-2816968 asmbl_36077 // Exon Skipping and Retention # skipped_exon 2814303-2815090 (orient:+) max_ev_support = 2 # retained_exon 2814732-2814833 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 2814732-2814833 asmbl_36082 scaffold_27 + intron_skips_exon 2814303-2815090 asmbl_36074,asmbl_36075,asmbl_36079,asmbl_36080 // Exon Skipping and Retention # skipped_exon 2814408-2815090 (orient:+) max_ev_support = 1 # retained_exon 2814732-2814833 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 2814732-2814833 asmbl_36082 scaffold_27 + intron_skips_exon 2814408-2815090 asmbl_36081 // Exon Skipping and Retention # skipped_exon 2829483-2832414 (orient:+) max_ev_support = 2 # retained_exon 2830935-2831768 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830935-2831768 asmbl_36085 scaffold_27 + intron_skips_exon 2829483-2832414 asmbl_36084 // Exon Skipping and Retention # skipped_exon 2830216-2832414 (orient:+) max_ev_support = 2 # retained_exon 2830935-2831768 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830935-2831768 asmbl_36085 scaffold_27 + intron_skips_exon 2830216-2832414 asmbl_36086 // Exon Skipping and Retention # skipped_exon 2829483-2830934 (orient:+) max_ev_support = 2 # retained_exon 2830195-2830215 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 2830195-2830215 asmbl_36086 scaffold_27 + intron_skips_exon 2829483-2830934 asmbl_36085 // Retained and Spliced Intron # retained_intron 2881786-2881921 (orient:+) max_ev_support = 1 # spliced_intron 2881786-2881921 (orient:+) max_ev_support = 2 scaffold_27 + intron 2881786-2881921 asmbl_36099,asmbl_36100,asmbl_36103,asmbl_36104,asmbl_36106 scaffold_27 + retained_intron 2881786-2881921 asmbl_36105 // Retained and Spliced Intron # retained_intron 3000478-3000572 (orient:+) max_ev_support = 2 # spliced_intron 3000478-3000572 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000478-3000572 asmbl_36110,asmbl_36111,asmbl_36117,asmbl_36119,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 3000478-3000572 asmbl_36109,asmbl_36113,asmbl_36115,asmbl_36118 // Retained and Spliced Intron # retained_intron 2997750-2997932 (orient:+) max_ev_support = 2 # spliced_intron 2997750-2997932 (orient:+) max_ev_support = 1 scaffold_27 + intron 2997750-2997932 asmbl_36119,asmbl_36121 scaffold_27 + retained_intron 2997750-2997932 asmbl_36110,asmbl_36120 // Retained and Spliced Intron # retained_intron 2997816-2997932 (orient:+) max_ev_support = 2 # spliced_intron 2997816-2997932 (orient:+) max_ev_support = 1 scaffold_27 + intron 2997816-2997932 asmbl_36122 scaffold_27 + retained_intron 2997816-2997932 asmbl_36110,asmbl_36120 // Retained and Spliced Intron # retained_intron 2998365-2998500 (orient:+) max_ev_support = 2 # spliced_intron 2998365-2998500 (orient:+) max_ev_support = 2 scaffold_27 + intron 2998365-2998500 asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36114,asmbl_36115,asmbl_36116,asmbl_36118,asmbl_36119,asmbl_36120,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 2998365-2998500 asmbl_36112 // Retained and Spliced Intron # retained_intron 2998561-2998674 (orient:+) max_ev_support = 2 # spliced_intron 2998561-2998674 (orient:+) max_ev_support = 2 scaffold_27 + intron 2998561-2998674 asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36114,asmbl_36115,asmbl_36118,asmbl_36119,asmbl_36120,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 2998561-2998674 asmbl_36112,asmbl_36116 // Retained and Spliced Intron # retained_intron 2998993-2999967 (orient:+) max_ev_support = 1 # spliced_intron 2998993-2999967 (orient:+) max_ev_support = 2 scaffold_27 + intron 2998993-2999967 asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36115,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 2998993-2999967 asmbl_36114,asmbl_36120 // Retained and Spliced Intron # retained_intron 3000034-3000124 (orient:+) max_ev_support = 1 # spliced_intron 3000034-3000124 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000034-3000124 asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36115,asmbl_36117,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 3000034-3000124 asmbl_36114,asmbl_36120 // Retained and Spliced Intron # retained_intron 3000638-3000932 (orient:+) max_ev_support = 1 # spliced_intron 3000638-3000932 (orient:+) max_ev_support = 2 scaffold_27 + intron 3000638-3000932 asmbl_36109,asmbl_36110,asmbl_36111,asmbl_36113,asmbl_36117,asmbl_36118,asmbl_36119,asmbl_36121,asmbl_36122 scaffold_27 + retained_intron 3000638-3000932 asmbl_36115 // Exon Skipping and Retention # skipped_exon 3023796-3025670 (orient:+) max_ev_support = 1 # retained_exon 3024865-3024965 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 3024865-3024965 asmbl_36131 scaffold_27 + intron_skips_exon 3023796-3025670 asmbl_36124,asmbl_36125,asmbl_36133 // Exon Skipping and Retention # skipped_exon 3020508-3022748 (orient:+) max_ev_support = 1 # retained_exon 3020770-3020793 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 3020770-3020793 asmbl_36133,asmbl_36134 scaffold_27 + intron_skips_exon 3020508-3022748 asmbl_36124,asmbl_36125,asmbl_36131 // Retained and Spliced Intron # retained_intron 3024966-3025670 (orient:+) max_ev_support = 1 # spliced_intron 3024966-3025670 (orient:+) max_ev_support = 1 scaffold_27 + intron 3024966-3025670 asmbl_36131 scaffold_27 + retained_intron 3024966-3025670 asmbl_36134 // Retained and Spliced Intron # retained_intron 3063415-3063502 (orient:+) max_ev_support = 4 # spliced_intron 3063415-3063502 (orient:+) max_ev_support = 1 scaffold_27 + intron 3063415-3063502 asmbl_36142 scaffold_27 + retained_intron 3063415-3063502 asmbl_36139,asmbl_36140,asmbl_36141 // Retained and Spliced Intron # retained_intron 3104389-3104460 (orient:+) max_ev_support = 1 # spliced_intron 3104389-3104460 (orient:+) max_ev_support = 2 scaffold_27 + intron 3104389-3104460 asmbl_36145 scaffold_27 + retained_intron 3104389-3104460 asmbl_36146 // Retained and Spliced Intron # retained_intron 3130050-3130150 (orient:+) max_ev_support = 2 # spliced_intron 3130050-3130150 (orient:+) max_ev_support = 2 scaffold_27 + intron 3130050-3130150 asmbl_36150,asmbl_36152,asmbl_36153 scaffold_27 + retained_intron 3130050-3130150 asmbl_36151 // Retained and Spliced Intron # retained_intron 3624384-3624770 (orient:+) max_ev_support = 2 # spliced_intron 3624384-3624770 (orient:+) max_ev_support = 3 scaffold_27 + intron 3624384-3624770 asmbl_36177 scaffold_27 + retained_intron 3624384-3624770 asmbl_36176,asmbl_36178 // Retained and Spliced Intron # retained_intron 3624875-3625095 (orient:+) max_ev_support = 4 # spliced_intron 3624875-3625095 (orient:+) max_ev_support = 3 scaffold_27 + intron 3624875-3625095 asmbl_36177,asmbl_36178 scaffold_27 + retained_intron 3624875-3625095 asmbl_36176 // Exon Skipping and Retention # skipped_exon 3865858-3866349 (orient:+) max_ev_support = 1 # retained_exon 3866108-3866210 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 3866108-3866210 asmbl_36187 scaffold_27 + intron_skips_exon 3865858-3866349 asmbl_36188 // Retained and Spliced Intron # retained_intron 3872262-3872498 (orient:+) max_ev_support = 3 # spliced_intron 3872262-3872498 (orient:+) max_ev_support = 1 scaffold_27 + intron 3872262-3872498 asmbl_36192 scaffold_27 + retained_intron 3872262-3872498 asmbl_36190,asmbl_36193 // Retained and Spliced Intron # retained_intron 3872568-3872679 (orient:+) max_ev_support = 3 # spliced_intron 3872568-3872679 (orient:+) max_ev_support = 1 scaffold_27 + intron 3872568-3872679 asmbl_36193 scaffold_27 + retained_intron 3872568-3872679 asmbl_36190 // Exon Skipping and Retention # skipped_exon 3972325-3972647 (orient:+) max_ev_support = 1 # retained_exon 3972444-3972536 (orient:+) max_ev_support = 4 scaffold_27 + retained_exons 3972444-3972536 asmbl_36203 scaffold_27 + intron_skips_exon 3972325-3972647 asmbl_36204 // Retained and Spliced Intron # retained_intron 4004657-4005068 (orient:+) max_ev_support = 2 # spliced_intron 4004657-4005068 (orient:+) max_ev_support = 1 scaffold_27 + intron 4004657-4005068 asmbl_36207,asmbl_36210,asmbl_36213 scaffold_27 + retained_intron 4004657-4005068 asmbl_36205,asmbl_36208,asmbl_36212 // Retained and Spliced Intron # retained_intron 4123018-4123064 (orient:+) max_ev_support = 5 # spliced_intron 4123018-4123064 (orient:+) max_ev_support = 1 scaffold_27 + intron 4123018-4123064 asmbl_36217 scaffold_27 + retained_intron 4123018-4123064 asmbl_36216 // Retained and Spliced Intron # retained_intron 4186686-4186765 (orient:+) max_ev_support = 1 # spliced_intron 4186686-4186765 (orient:+) max_ev_support = 2 scaffold_27 + intron 4186686-4186765 asmbl_36220 scaffold_27 + retained_intron 4186686-4186765 asmbl_36221 // Retained and Spliced Intron # retained_intron 4528661-4528689 (orient:+) max_ev_support = 1 # spliced_intron 4528661-4528689 (orient:+) max_ev_support = 1 scaffold_27 + intron 4528661-4528689 asmbl_36261 scaffold_27 + retained_intron 4528661-4528689 asmbl_36262,asmbl_36264 // Retained and Spliced Intron # retained_intron 4755122-4755207 (orient:+) max_ev_support = 1 # spliced_intron 4755122-4755207 (orient:+) max_ev_support = 1 scaffold_27 + intron 4755122-4755207 asmbl_36270 scaffold_27 + retained_intron 4755122-4755207 asmbl_36271 // Exon Skipping and Retention # skipped_exon 4944928-4945777 (orient:+) max_ev_support = 1 # retained_exon 4945078-4945192 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 4945078-4945192 asmbl_36282,asmbl_36283,asmbl_36284 scaffold_27 + intron_skips_exon 4944928-4945777 asmbl_36288,asmbl_36289 // Retained and Spliced Intron # retained_intron 4938413-4938601 (orient:+) max_ev_support = 1 # spliced_intron 4938413-4938601 (orient:+) max_ev_support = 2 scaffold_27 + intron 4938413-4938601 asmbl_36282,asmbl_36283,asmbl_36285 scaffold_27 + retained_intron 4938413-4938601 asmbl_36284,asmbl_36286,asmbl_36287,asmbl_36288 // Retained and Spliced Intron # retained_intron 4961885-4961915 (orient:+) max_ev_support = 1 # spliced_intron 4961885-4961915 (orient:+) max_ev_support = 1 scaffold_27 + intron 4961885-4961915 asmbl_36291 scaffold_27 + retained_intron 4961885-4961915 asmbl_36292 // Exon Skipping and Retention # skipped_exon 5015909-5017714 (orient:+) max_ev_support = 3 # retained_exon 5017042-5017098 (orient:+) max_ev_support = 2 scaffold_27 + retained_exons 5017042-5017098 asmbl_36294,asmbl_36295 scaffold_27 + intron_skips_exon 5015909-5017714 asmbl_36293 // Retained and Spliced Intron # retained_intron 5686546-5686785 (orient:+) max_ev_support = 4 # spliced_intron 5686546-5686785 (orient:+) max_ev_support = 2 scaffold_27 + intron 5686546-5686785 asmbl_36316,asmbl_36318 scaffold_27 + retained_intron 5686546-5686785 asmbl_36314,asmbl_36315 // Retained and Spliced Intron # retained_intron 6069445-6069599 (orient:+) max_ev_support = 2 # spliced_intron 6069445-6069599 (orient:+) max_ev_support = 2 scaffold_27 + intron 6069445-6069599 asmbl_36325,asmbl_36326 scaffold_27 + retained_intron 6069445-6069599 asmbl_36324 // Exon Skipping and Retention # skipped_exon 6194706-6196554 (orient:+) max_ev_support = 1 # retained_exon 6195097-6195177 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 6195097-6195177 asmbl_36334 scaffold_27 + intron_skips_exon 6194706-6196554 asmbl_36335,asmbl_36336 // Exon Skipping and Retention # skipped_exon 6194706-6196958 (orient:+) max_ev_support = 1 # retained_exon 6195097-6196599 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 6195097-6195177,6196555-6196599 asmbl_36334 scaffold_27 + intron_skips_exon 6194706-6196958 asmbl_36337 // Retained and Spliced Intron # retained_intron 6258368-6258607 (orient:+) max_ev_support = 2 # spliced_intron 6258368-6258607 (orient:+) max_ev_support = 2 scaffold_27 + intron 6258368-6258607 asmbl_36349 scaffold_27 + retained_intron 6258368-6258607 asmbl_36348 // Retained and Spliced Intron # retained_intron 6258393-6258607 (orient:+) max_ev_support = 2 # spliced_intron 6258393-6258607 (orient:+) max_ev_support = 1 scaffold_27 + intron 6258393-6258607 asmbl_36352 scaffold_27 + retained_intron 6258393-6258607 asmbl_36348 // Retained and Spliced Intron # retained_intron 6258393-6258777 (orient:+) max_ev_support = 2 # spliced_intron 6258393-6258777 (orient:+) max_ev_support = 1 scaffold_27 + intron 6258393-6258777 asmbl_36351,asmbl_36353 scaffold_27 + retained_intron 6258393-6258777 asmbl_36348 // Retained and Spliced Intron # retained_intron 6708854-6709006 (orient:+) max_ev_support = 1 # spliced_intron 6708854-6709006 (orient:+) max_ev_support = 1 scaffold_27 + intron 6708854-6709006 asmbl_36357,asmbl_36358,asmbl_36359 scaffold_27 + retained_intron 6708854-6709006 asmbl_36360 // Retained and Spliced Intron # retained_intron 6742224-6742264 (orient:+) max_ev_support = 2 # spliced_intron 6742224-6742264 (orient:+) max_ev_support = 1 scaffold_27 + intron 6742224-6742264 asmbl_36366 scaffold_27 + retained_intron 6742224-6742264 asmbl_36367,asmbl_36368 // Retained and Spliced Intron # retained_intron 7277803-7277891 (orient:+) max_ev_support = 3 # spliced_intron 7277803-7277891 (orient:+) max_ev_support = 1 scaffold_27 + intron 7277803-7277891 asmbl_36402 scaffold_27 + retained_intron 7277803-7277891 asmbl_36401 // Retained and Spliced Intron # retained_intron 7277981-7278212 (orient:+) max_ev_support = 3 # spliced_intron 7277981-7278212 (orient:+) max_ev_support = 1 scaffold_27 + intron 7277981-7278212 asmbl_36402 scaffold_27 + retained_intron 7277981-7278212 asmbl_36401 // Retained and Spliced Intron # retained_intron 7449983-7450375 (orient:+) max_ev_support = 3 # spliced_intron 7449983-7450375 (orient:+) max_ev_support = 1 scaffold_27 + intron 7449983-7450375 asmbl_36409 scaffold_27 + retained_intron 7449983-7450375 asmbl_36408 // Retained and Spliced Intron # retained_intron 7522152-7522244 (orient:+) max_ev_support = 1 # spliced_intron 7522152-7522244 (orient:+) max_ev_support = 1 scaffold_27 + intron 7522152-7522244 asmbl_36424 scaffold_27 + retained_intron 7522152-7522244 asmbl_36422 // Exon Skipping and Retention # skipped_exon 7521642-7522241 (orient:+) max_ev_support = 2 # retained_exon 7522112-7522151 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 7522112-7522151 asmbl_36424 scaffold_27 + intron_skips_exon 7521642-7522241 asmbl_36421 // Exon Skipping and Retention # skipped_exon 7521642-7522244 (orient:+) max_ev_support = 1 # retained_exon 7522112-7522151 (orient:+) max_ev_support = 1 scaffold_27 + retained_exons 7522112-7522151 asmbl_36424 scaffold_27 + intron_skips_exon 7521642-7522244 asmbl_36423 // Retained and Spliced Intron # retained_intron 8919877-8919990 (orient:+) max_ev_support = 3 # spliced_intron 8919877-8919990 (orient:+) max_ev_support = 1 scaffold_27 + intron 8919877-8919990 asmbl_36436 scaffold_27 + retained_intron 8919877-8919990 asmbl_36435 // Retained and Spliced Intron # retained_intron 9917345-9917430 (orient:+) max_ev_support = 2 # spliced_intron 9917345-9917430 (orient:+) max_ev_support = 1 scaffold_27 + intron 9917345-9917430 asmbl_36497 scaffold_27 + retained_intron 9917345-9917430 asmbl_36494 // Retained and Spliced Intron # retained_intron 9968387-9968472 (orient:+) max_ev_support = 2 # spliced_intron 9968387-9968472 (orient:+) max_ev_support = 2 scaffold_27 + intron 9968387-9968472 asmbl_36507 scaffold_27 + retained_intron 9968387-9968472 asmbl_36508,asmbl_36509 // Exon Skipping and Retention # skipped_exon 9989075-9989784 (orient:+) max_ev_support = 1 # retained_exon 9989337-9989454 (orient:+) max_ev_support = 3 scaffold_27 + retained_exons 9989337-9989454 asmbl_36510 scaffold_27 + intron_skips_exon 9989075-9989784 asmbl_36511 // Retained and Spliced Intron # retained_intron 128244-128281 (orient:-) max_ev_support = 1 # spliced_intron 128244-128281 (orient:-) max_ev_support = 2 scaffold_27 - intron 128244-128281 asmbl_36587,asmbl_36591 scaffold_27 - retained_intron 128244-128281 asmbl_36588 // Retained and Spliced Intron # retained_intron 129467-131958 (orient:-) max_ev_support = 2 # spliced_intron 129467-131958 (orient:-) max_ev_support = 2 scaffold_27 - intron 129467-131958 asmbl_36587,asmbl_36588,asmbl_36592 scaffold_27 - retained_intron 129467-131958 asmbl_36589,asmbl_36590 // Exon Skipping and Retention # skipped_exon 144985-146719 (orient:-) max_ev_support = 1 # retained_exon 145842-145925 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 145842-145925 asmbl_36596 scaffold_27 - intron_skips_exon 144985-146719 asmbl_36598 // Retained and Spliced Intron # retained_intron 157697-157951 (orient:-) max_ev_support = 3 # spliced_intron 157697-157951 (orient:-) max_ev_support = 2 scaffold_27 - intron 157697-157951 asmbl_36602 scaffold_27 - retained_intron 157697-157951 asmbl_36601,asmbl_36603 // Retained and Spliced Intron # retained_intron 158035-158158 (orient:-) max_ev_support = 3 # spliced_intron 158035-158158 (orient:-) max_ev_support = 2 scaffold_27 - intron 158035-158158 asmbl_36602,asmbl_36603 scaffold_27 - retained_intron 158035-158158 asmbl_36601 // Retained and Spliced Intron # retained_intron 160376-160481 (orient:-) max_ev_support = 2 # spliced_intron 160376-160481 (orient:-) max_ev_support = 3 scaffold_27 - intron 160376-160481 asmbl_36605 scaffold_27 - retained_intron 160376-160481 asmbl_36606 // Retained and Spliced Intron # retained_intron 313987-314158 (orient:-) max_ev_support = 1 # spliced_intron 313987-314158 (orient:-) max_ev_support = 1 scaffold_27 - intron 313987-314158 asmbl_36615,asmbl_36616,asmbl_36617 scaffold_27 - retained_intron 313987-314158 asmbl_36613,asmbl_36614 // Retained and Spliced Intron # retained_intron 313987-314458 (orient:-) max_ev_support = 1 # spliced_intron 313987-314458 (orient:-) max_ev_support = 1 scaffold_27 - intron 313987-314458 asmbl_36612 scaffold_27 - retained_intron 313987-314458 asmbl_36613,asmbl_36614 // Retained and Spliced Intron # retained_intron 314278-314458 (orient:-) max_ev_support = 1 # spliced_intron 314278-314458 (orient:-) max_ev_support = 1 scaffold_27 - intron 314278-314458 asmbl_36615,asmbl_36616,asmbl_36617 scaffold_27 - retained_intron 314278-314458 asmbl_36613,asmbl_36614 // Retained and Spliced Intron # retained_intron 314737-315174 (orient:-) max_ev_support = 1 # spliced_intron 314737-315174 (orient:-) max_ev_support = 1 scaffold_27 - intron 314737-315174 asmbl_36616 scaffold_27 - retained_intron 314737-315174 asmbl_36613,asmbl_36615,asmbl_36617 // Retained and Spliced Intron # retained_intron 315477-315621 (orient:-) max_ev_support = 1 # spliced_intron 315477-315621 (orient:-) max_ev_support = 1 scaffold_27 - intron 315477-315621 asmbl_36615,asmbl_36616 scaffold_27 - retained_intron 315477-315621 asmbl_36613,asmbl_36617 // Retained and Spliced Intron # retained_intron 314564-314644 (orient:-) max_ev_support = 1 # spliced_intron 314564-314644 (orient:-) max_ev_support = 1 scaffold_27 - intron 314564-314644 asmbl_36612,asmbl_36613,asmbl_36615,asmbl_36616,asmbl_36617 scaffold_27 - retained_intron 314564-314644 asmbl_36614 // Exon Skipping and Retention # skipped_exon 313987-314458 (orient:-) max_ev_support = 1 # retained_exon 314159-314277 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 314159-314277 asmbl_36615,asmbl_36616,asmbl_36617 scaffold_27 - intron_skips_exon 313987-314458 asmbl_36612 // Retained and Spliced Intron # retained_intron 358421-358649 (orient:-) max_ev_support = 2 # spliced_intron 358421-358649 (orient:-) max_ev_support = 4 scaffold_27 - intron 358421-358649 asmbl_36630 scaffold_27 - retained_intron 358421-358649 asmbl_36631 // Retained and Spliced Intron # retained_intron 381928-382157 (orient:-) max_ev_support = 2 # spliced_intron 381928-382157 (orient:-) max_ev_support = 2 scaffold_27 - intron 381928-382157 asmbl_36633 scaffold_27 - retained_intron 381928-382157 asmbl_36634 // Retained and Spliced Intron # retained_intron 381931-382927 (orient:-) max_ev_support = 4 # spliced_intron 381931-382927 (orient:-) max_ev_support = 2 scaffold_27 - intron 381931-382927 asmbl_36636,asmbl_36637 scaffold_27 - retained_intron 381931-382927 asmbl_36634 // Exon Skipping and Retention # skipped_exon 381931-384414 (orient:-) max_ev_support = 2 # retained_exon 382928-383039 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 382928-383039 asmbl_36636 scaffold_27 - intron_skips_exon 381931-384414 asmbl_36635 // Retained and Spliced Intron # retained_intron 512494-512580 (orient:-) max_ev_support = 1 # spliced_intron 512494-512580 (orient:-) max_ev_support = 1 scaffold_27 - intron 512494-512580 asmbl_36648,asmbl_36650 scaffold_27 - retained_intron 512494-512580 asmbl_36647,asmbl_36649 // Retained and Spliced Intron # retained_intron 512659-512738 (orient:-) max_ev_support = 3 # spliced_intron 512659-512738 (orient:-) max_ev_support = 1 scaffold_27 - intron 512659-512738 asmbl_36649,asmbl_36650 scaffold_27 - retained_intron 512659-512738 asmbl_36647,asmbl_36648 // Exon Skipping and Retention # skipped_exon 626799-628881 (orient:-) max_ev_support = 2 # retained_exon 627096-627300 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 627096-627300 asmbl_36653,asmbl_36659 scaffold_27 - intron_skips_exon 626799-628881 asmbl_36655 // Retained and Spliced Intron # retained_intron 638380-638592 (orient:-) max_ev_support = 2 # spliced_intron 638380-638592 (orient:-) max_ev_support = 2 scaffold_27 - intron 638380-638592 asmbl_36661 scaffold_27 - retained_intron 638380-638592 asmbl_36660 // Retained and Spliced Intron # retained_intron 638419-638515 (orient:-) max_ev_support = 2 # spliced_intron 638419-638515 (orient:-) max_ev_support = 2 scaffold_27 - intron 638419-638515 asmbl_36662,asmbl_36664 scaffold_27 - retained_intron 638419-638515 asmbl_36660 // Retained and Spliced Intron # retained_intron 927062-927428 (orient:-) max_ev_support = 3 # spliced_intron 927062-927428 (orient:-) max_ev_support = 3 scaffold_27 - intron 927062-927428 asmbl_36667,asmbl_36668 scaffold_27 - retained_intron 927062-927428 asmbl_36666 // Retained and Spliced Intron # retained_intron 931032-931338 (orient:-) max_ev_support = 3 # spliced_intron 931032-931338 (orient:-) max_ev_support = 1 scaffold_27 - intron 931032-931338 asmbl_36672 scaffold_27 - retained_intron 931032-931338 asmbl_36670,asmbl_36671 // Exon Skipping and Retention # skipped_exon 932171-933022 (orient:-) max_ev_support = 1 # retained_exon 932682-932837 (orient:-) max_ev_support = 3 scaffold_27 - retained_exons 932682-932837 asmbl_36670,asmbl_36671 scaffold_27 - intron_skips_exon 932171-933022 asmbl_36672 // Retained and Spliced Intron # retained_intron 1026348-1026649 (orient:-) max_ev_support = 1 # spliced_intron 1026348-1026649 (orient:-) max_ev_support = 2 scaffold_27 - intron 1026348-1026649 asmbl_36689,asmbl_36690,asmbl_36692 scaffold_27 - retained_intron 1026348-1026649 asmbl_36691 // Retained and Spliced Intron # retained_intron 1406245-1406809 (orient:-) max_ev_support = 1 # spliced_intron 1406245-1406809 (orient:-) max_ev_support = 1 scaffold_27 - intron 1406245-1406809 asmbl_36705 scaffold_27 - retained_intron 1406245-1406809 asmbl_36704 // Retained and Spliced Intron # retained_intron 1638883-1639004 (orient:-) max_ev_support = 1 # spliced_intron 1638883-1639004 (orient:-) max_ev_support = 2 scaffold_27 - intron 1638883-1639004 asmbl_36725 scaffold_27 - retained_intron 1638883-1639004 asmbl_36726 // Exon Skipping and Retention # skipped_exon 1728475-1730643 (orient:-) max_ev_support = 2 # retained_exon 1729172-1729204 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 1729172-1729204 asmbl_36735 scaffold_27 - intron_skips_exon 1728475-1730643 asmbl_36734 // Exon Skipping and Retention # skipped_exon 1983237-1983877 (orient:-) max_ev_support = 2 # retained_exon 1983496-1983703 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 1983496-1983703 asmbl_36752 scaffold_27 - intron_skips_exon 1983237-1983877 asmbl_36751 // Exon Skipping and Retention # skipped_exon 2550132-2552911 (orient:-) max_ev_support = 2 # retained_exon 2551118-2551162 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 2551118-2551162 asmbl_36781 scaffold_27 - intron_skips_exon 2550132-2552911 asmbl_36780 // Retained and Spliced Intron # retained_intron 2824529-2824739 (orient:-) max_ev_support = 1 # spliced_intron 2824529-2824739 (orient:-) max_ev_support = 2 scaffold_27 - intron 2824529-2824739 asmbl_36811,asmbl_36814 scaffold_27 - retained_intron 2824529-2824739 asmbl_36813 // Retained and Spliced Intron # retained_intron 2883096-2883240 (orient:-) max_ev_support = 2 # spliced_intron 2883096-2883240 (orient:-) max_ev_support = 2 scaffold_27 - intron 2883096-2883240 asmbl_36819,asmbl_36820 scaffold_27 - retained_intron 2883096-2883240 asmbl_36818 // Retained and Spliced Intron # retained_intron 2903073-2903179 (orient:-) max_ev_support = 2 # spliced_intron 2903073-2903179 (orient:-) max_ev_support = 3 scaffold_27 - intron 2903073-2903179 asmbl_36821 scaffold_27 - retained_intron 2903073-2903179 asmbl_36823 // Retained and Spliced Intron # retained_intron 2903102-2903179 (orient:-) max_ev_support = 2 # spliced_intron 2903102-2903179 (orient:-) max_ev_support = 1 scaffold_27 - intron 2903102-2903179 asmbl_36822 scaffold_27 - retained_intron 2903102-2903179 asmbl_36823 // Exon Skipping and Retention # skipped_exon 3091909-3093281 (orient:-) max_ev_support = 2 # retained_exon 3092523-3092591 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 3092523-3092591 asmbl_36839 scaffold_27 - intron_skips_exon 3091909-3093281 asmbl_36840,asmbl_36846 // Exon Skipping and Retention # skipped_exon 3091909-3093432 (orient:-) max_ev_support = 2 # retained_exon 3092523-3092591 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 3092523-3092591 asmbl_36839 scaffold_27 - intron_skips_exon 3091909-3093432 asmbl_36841 // Retained and Spliced Intron # retained_intron 3093328-3093432 (orient:-) max_ev_support = 2 # spliced_intron 3093328-3093432 (orient:-) max_ev_support = 1 scaffold_27 - intron 3093328-3093432 asmbl_36846 scaffold_27 - retained_intron 3093328-3093432 asmbl_36839,asmbl_36840,asmbl_36843 // Retained and Spliced Intron # retained_intron 3090524-3090653 (orient:-) max_ev_support = 2 # spliced_intron 3090524-3090653 (orient:-) max_ev_support = 2 scaffold_27 - intron 3090524-3090653 asmbl_36839,asmbl_36840,asmbl_36841,asmbl_36844,asmbl_36845,asmbl_36846 scaffold_27 - retained_intron 3090524-3090653 asmbl_36842,asmbl_36847 // Retained and Spliced Intron # retained_intron 3297546-3297880 (orient:-) max_ev_support = 3 # spliced_intron 3297546-3297880 (orient:-) max_ev_support = 1 scaffold_27 - intron 3297546-3297880 asmbl_36859 scaffold_27 - retained_intron 3297546-3297880 asmbl_36858 // Retained and Spliced Intron # retained_intron 3741581-3742122 (orient:-) max_ev_support = 2 # spliced_intron 3741581-3742122 (orient:-) max_ev_support = 2 scaffold_27 - intron 3741581-3742122 asmbl_36872,asmbl_36874 scaffold_27 - retained_intron 3741581-3742122 asmbl_36873,asmbl_36875 // Retained and Spliced Intron # retained_intron 3742551-3742650 (orient:-) max_ev_support = 2 # spliced_intron 3742551-3742650 (orient:-) max_ev_support = 2 scaffold_27 - intron 3742551-3742650 asmbl_36872,asmbl_36873 scaffold_27 - retained_intron 3742551-3742650 asmbl_36874,asmbl_36875 // Exon Skipping and Retention # skipped_exon 3920125-3920693 (orient:-) max_ev_support = 1 # retained_exon 3920227-3920466 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 3920227-3920321,3920403-3920466 asmbl_36891 scaffold_27 - intron_skips_exon 3920125-3920693 asmbl_36892 // Retained and Spliced Intron # retained_intron 4799664-4799998 (orient:-) max_ev_support = 2 # spliced_intron 4799664-4799998 (orient:-) max_ev_support = 3 scaffold_27 - intron 4799664-4799998 asmbl_36925,asmbl_36927 scaffold_27 - retained_intron 4799664-4799998 asmbl_36926 // Retained and Spliced Intron # retained_intron 5049610-5049786 (orient:-) max_ev_support = 3 # spliced_intron 5049610-5049786 (orient:-) max_ev_support = 1 scaffold_27 - intron 5049610-5049786 asmbl_36937,asmbl_36938 scaffold_27 - retained_intron 5049610-5049786 asmbl_36936 // Retained and Spliced Intron # retained_intron 5049880-5050708 (orient:-) max_ev_support = 3 # spliced_intron 5049880-5050708 (orient:-) max_ev_support = 1 scaffold_27 - intron 5049880-5050708 asmbl_36937 scaffold_27 - retained_intron 5049880-5050708 asmbl_36936,asmbl_36938 // Retained and Spliced Intron # retained_intron 5320907-5320932 (orient:-) max_ev_support = 2 # spliced_intron 5320907-5320932 (orient:-) max_ev_support = 1 scaffold_27 - intron 5320907-5320932 asmbl_36959 scaffold_27 - retained_intron 5320907-5320932 asmbl_36958 // Exon Skipping and Retention # skipped_exon 5797927-5799064 (orient:-) max_ev_support = 1 # retained_exon 5798208-5798314 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 5798208-5798314 asmbl_36982 scaffold_27 - intron_skips_exon 5797927-5799064 asmbl_36981 // Retained and Spliced Intron # retained_intron 6482619-6483087 (orient:-) max_ev_support = 3 # spliced_intron 6482619-6483087 (orient:-) max_ev_support = 1 scaffold_27 - intron 6482619-6483087 asmbl_37013 scaffold_27 - retained_intron 6482619-6483087 asmbl_37012 // Exon Skipping and Retention # skipped_exon 6610373-6611472 (orient:-) max_ev_support = 2 # retained_exon 6610883-6610940 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 6610883-6610940 asmbl_37024,asmbl_37025 scaffold_27 - intron_skips_exon 6610373-6611472 asmbl_37023 // Retained and Spliced Intron # retained_intron 6702554-6703059 (orient:-) max_ev_support = 2 # spliced_intron 6702554-6703059 (orient:-) max_ev_support = 1 scaffold_27 - intron 6702554-6703059 asmbl_37034 scaffold_27 - retained_intron 6702554-6703059 asmbl_37033 // Retained and Spliced Intron # retained_intron 6782129-6782627 (orient:-) max_ev_support = 2 # spliced_intron 6782129-6782627 (orient:-) max_ev_support = 2 scaffold_27 - intron 6782129-6782627 asmbl_37038 scaffold_27 - retained_intron 6782129-6782627 asmbl_37035 // Retained and Spliced Intron # retained_intron 6782164-6782627 (orient:-) max_ev_support = 2 # spliced_intron 6782164-6782627 (orient:-) max_ev_support = 2 scaffold_27 - intron 6782164-6782627 asmbl_37037 scaffold_27 - retained_intron 6782164-6782627 asmbl_37035 // Retained and Spliced Intron # retained_intron 6782467-6782627 (orient:-) max_ev_support = 2 # spliced_intron 6782467-6782627 (orient:-) max_ev_support = 2 scaffold_27 - intron 6782467-6782627 asmbl_37036 scaffold_27 - retained_intron 6782467-6782627 asmbl_37035 // Exon Skipping and Retention # skipped_exon 7192145-7194416 (orient:-) max_ev_support = 2 # retained_exon 7193619-7193775 (orient:-) max_ev_support = 2 scaffold_27 - retained_exons 7193619-7193775 asmbl_37048 scaffold_27 - intron_skips_exon 7192145-7194416 asmbl_37047 // Exon Skipping and Retention # skipped_exon 9331939-9334621 (orient:-) max_ev_support = 2 # retained_exon 9333891-9333995 (orient:-) max_ev_support = 1 scaffold_27 - retained_exons 9333891-9333995 asmbl_37084 scaffold_27 - intron_skips_exon 9331939-9334621 asmbl_37083 // Retained and Spliced Intron # retained_intron 9882673-9882736 (orient:-) max_ev_support = 1 # spliced_intron 9882673-9882736 (orient:-) max_ev_support = 1 scaffold_27 - intron 9882673-9882736 asmbl_37108 scaffold_27 - retained_intron 9882673-9882736 asmbl_37107 // Retained and Spliced Intron # retained_intron 835-963 (orient:-) max_ev_support = 1 # spliced_intron 835-963 (orient:-) max_ev_support = 1 scaffold_2727 - intron 835-963 asmbl_37192 scaffold_2727 - retained_intron 835-963 asmbl_37191 // Exon Skipping and Retention # skipped_exon 56889-58087 (orient:-) max_ev_support = 1 # retained_exon 57850-57968 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 57850-57968 asmbl_37205,asmbl_37208 scaffold_28 - intron_skips_exon 56889-58087 asmbl_37210 // Retained and Spliced Intron # retained_intron 58885-58965 (orient:-) max_ev_support = 2 # spliced_intron 58885-58965 (orient:-) max_ev_support = 2 scaffold_28 - intron 58885-58965 asmbl_37205,asmbl_37208,asmbl_37210 scaffold_28 - retained_intron 58885-58965 asmbl_37209 // Retained and Spliced Intron # retained_intron 106950-107373 (orient:-) max_ev_support = 1 # spliced_intron 106950-107373 (orient:-) max_ev_support = 2 scaffold_28 - intron 106950-107373 asmbl_37214,asmbl_37217 scaffold_28 - retained_intron 106950-107373 asmbl_37215,asmbl_37216 // Retained and Spliced Intron # retained_intron 107460-108782 (orient:-) max_ev_support = 1 # spliced_intron 107460-108782 (orient:-) max_ev_support = 2 scaffold_28 - intron 107460-108782 asmbl_37214 scaffold_28 - retained_intron 107460-108782 asmbl_37215,asmbl_37216,asmbl_37217 // Retained and Spliced Intron # retained_intron 105779-105881 (orient:-) max_ev_support = 1 # spliced_intron 105779-105881 (orient:-) max_ev_support = 2 scaffold_28 - intron 105779-105881 asmbl_37214,asmbl_37215,asmbl_37217 scaffold_28 - retained_intron 105779-105881 asmbl_37216 // Retained and Spliced Intron # retained_intron 221848-222198 (orient:-) max_ev_support = 1 # spliced_intron 221848-222198 (orient:-) max_ev_support = 1 scaffold_28 - intron 221848-222198 asmbl_37223 scaffold_28 - retained_intron 221848-222198 asmbl_37224,asmbl_37225 // Retained and Spliced Intron # retained_intron 226675-226779 (orient:-) max_ev_support = 1 # spliced_intron 226675-226779 (orient:-) max_ev_support = 1 scaffold_28 - intron 226675-226779 asmbl_37223,asmbl_37224 scaffold_28 - retained_intron 226675-226779 asmbl_37225 // Retained and Spliced Intron # retained_intron 535489-536046 (orient:-) max_ev_support = 5 # spliced_intron 535489-536046 (orient:-) max_ev_support = 2 scaffold_28 - intron 535489-536046 asmbl_37230 scaffold_28 - retained_intron 535489-536046 asmbl_37229 // Exon Skipping and Retention # skipped_exon 538019-538931 (orient:-) max_ev_support = 1 # retained_exon 538460-538587 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 538460-538587 asmbl_37232,asmbl_37233,asmbl_37234,asmbl_37236 scaffold_28 - intron_skips_exon 538019-538931 asmbl_37235 // Exon Skipping and Retention # skipped_exon 539383-539895 (orient:-) max_ev_support = 1 # retained_exon 539546-539623 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 539546-539623 asmbl_37232 scaffold_28 - intron_skips_exon 539383-539895 asmbl_37233,asmbl_37234,asmbl_37235 // Exon Skipping and Retention # skipped_exon 539383-539891 (orient:-) max_ev_support = 1 # retained_exon 539546-539623 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 539546-539623 asmbl_37232 scaffold_28 - intron_skips_exon 539383-539891 asmbl_37236 // Retained and Spliced Intron # retained_intron 575733-575994 (orient:-) max_ev_support = 2 # spliced_intron 575733-575994 (orient:-) max_ev_support = 2 scaffold_28 - intron 575733-575994 asmbl_37240,asmbl_37243 scaffold_28 - retained_intron 575733-575994 asmbl_37241 // Exon Skipping and Retention # skipped_exon 1008096-1008835 (orient:-) max_ev_support = 1 # retained_exon 1008211-1008357 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1008211-1008357 asmbl_37279 scaffold_28 - intron_skips_exon 1008096-1008835 asmbl_37280,asmbl_37281 // Retained and Spliced Intron # retained_intron 1104760-1104779 (orient:-) max_ev_support = 1 # spliced_intron 1104760-1104779 (orient:-) max_ev_support = 2 scaffold_28 - intron 1104760-1104779 asmbl_37287 scaffold_28 - retained_intron 1104760-1104779 asmbl_37288 // Exon Skipping and Retention # skipped_exon 1431687-1434129 (orient:-) max_ev_support = 2 # retained_exon 1432997-1433103 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1432997-1433103 asmbl_37313 scaffold_28 - intron_skips_exon 1431687-1434129 asmbl_37312,asmbl_37314 // Exon Skipping and Retention # skipped_exon 1434222-1435417 (orient:-) max_ev_support = 2 # retained_exon 1434807-1434860 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 1434807-1434860 asmbl_37313,asmbl_37314 scaffold_28 - intron_skips_exon 1434222-1435417 asmbl_37312 // Retained and Spliced Intron # retained_intron 2265643-2266048 (orient:-) max_ev_support = 1 # spliced_intron 2265643-2266048 (orient:-) max_ev_support = 3 scaffold_28 - intron 2265643-2266048 asmbl_37346,asmbl_37348,asmbl_37349,asmbl_37351 scaffold_28 - retained_intron 2265643-2266048 asmbl_37345,asmbl_37353 // Retained and Spliced Intron # retained_intron 2303296-2303372 (orient:-) max_ev_support = 1 # spliced_intron 2303296-2303372 (orient:-) max_ev_support = 1 scaffold_28 - intron 2303296-2303372 asmbl_37359 scaffold_28 - retained_intron 2303296-2303372 asmbl_37358 // Retained and Spliced Intron # retained_intron 2729367-2729694 (orient:-) max_ev_support = 1 # spliced_intron 2729367-2729694 (orient:-) max_ev_support = 2 scaffold_28 - intron 2729367-2729694 asmbl_37403 scaffold_28 - retained_intron 2729367-2729694 asmbl_37404 // Retained and Spliced Intron # retained_intron 2808976-2809341 (orient:-) max_ev_support = 1 # spliced_intron 2808976-2809341 (orient:-) max_ev_support = 2 scaffold_28 - intron 2808976-2809341 asmbl_37408,asmbl_37410,asmbl_37413 scaffold_28 - retained_intron 2808976-2809341 asmbl_37409,asmbl_37411,asmbl_37412,asmbl_37414 // Retained and Spliced Intron # retained_intron 2810466-2811309 (orient:-) max_ev_support = 1 # spliced_intron 2810466-2811309 (orient:-) max_ev_support = 1 scaffold_28 - intron 2810466-2811309 asmbl_37410 scaffold_28 - retained_intron 2810466-2811309 asmbl_37409,asmbl_37412,asmbl_37413 // Retained and Spliced Intron # retained_intron 2810466-2811511 (orient:-) max_ev_support = 1 # spliced_intron 2810466-2811511 (orient:-) max_ev_support = 2 scaffold_28 - intron 2810466-2811511 asmbl_37408,asmbl_37411,asmbl_37414 scaffold_28 - retained_intron 2810466-2811511 asmbl_37409,asmbl_37412,asmbl_37413 // Retained and Spliced Intron # retained_intron 2811349-2811511 (orient:-) max_ev_support = 1 # spliced_intron 2811349-2811511 (orient:-) max_ev_support = 1 scaffold_28 - intron 2811349-2811511 asmbl_37410 scaffold_28 - retained_intron 2811349-2811511 asmbl_37409,asmbl_37412,asmbl_37413 // Exon Skipping and Retention # skipped_exon 2810466-2811511 (orient:-) max_ev_support = 2 # retained_exon 2811310-2811348 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 2811310-2811348 asmbl_37410 scaffold_28 - intron_skips_exon 2810466-2811511 asmbl_37408,asmbl_37411,asmbl_37414 // Retained and Spliced Intron # retained_intron 3037644-3038209 (orient:-) max_ev_support = 3 # spliced_intron 3037644-3038209 (orient:-) max_ev_support = 1 scaffold_28 - intron 3037644-3038209 asmbl_37452 scaffold_28 - retained_intron 3037644-3038209 asmbl_37451 // Exon Skipping and Retention # skipped_exon 3117227-3117613 (orient:-) max_ev_support = 1 # retained_exon 3117420-3117491 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 3117420-3117491 asmbl_37457 scaffold_28 - intron_skips_exon 3117227-3117613 asmbl_37458 // Retained and Spliced Intron # retained_intron 3175623-3175744 (orient:-) max_ev_support = 1 # spliced_intron 3175623-3175744 (orient:-) max_ev_support = 2 scaffold_28 - intron 3175623-3175744 asmbl_37461 scaffold_28 - retained_intron 3175623-3175744 asmbl_37462 // Retained and Spliced Intron # retained_intron 3523207-3523344 (orient:-) max_ev_support = 1 # spliced_intron 3523207-3523344 (orient:-) max_ev_support = 1 scaffold_28 - intron 3523207-3523344 asmbl_37480 scaffold_28 - retained_intron 3523207-3523344 asmbl_37481 // Retained and Spliced Intron # retained_intron 4194207-4194283 (orient:-) max_ev_support = 1 # spliced_intron 4194207-4194283 (orient:-) max_ev_support = 2 scaffold_28 - intron 4194207-4194283 asmbl_37522 scaffold_28 - retained_intron 4194207-4194283 asmbl_37523 // Retained and Spliced Intron # retained_intron 4194207-4194306 (orient:-) max_ev_support = 1 # spliced_intron 4194207-4194306 (orient:-) max_ev_support = 2 scaffold_28 - intron 4194207-4194306 asmbl_37521 scaffold_28 - retained_intron 4194207-4194306 asmbl_37523 // Retained and Spliced Intron # retained_intron 4255504-4255598 (orient:-) max_ev_support = 1 # spliced_intron 4255504-4255598 (orient:-) max_ev_support = 2 scaffold_28 - intron 4255504-4255598 asmbl_37524 scaffold_28 - retained_intron 4255504-4255598 asmbl_37525 // Retained and Spliced Intron # retained_intron 4255778-4255887 (orient:-) max_ev_support = 1 # spliced_intron 4255778-4255887 (orient:-) max_ev_support = 2 scaffold_28 - intron 4255778-4255887 asmbl_37524 scaffold_28 - retained_intron 4255778-4255887 asmbl_37525 // Retained and Spliced Intron # retained_intron 4440911-4440975 (orient:-) max_ev_support = 2 # spliced_intron 4440911-4440975 (orient:-) max_ev_support = 2 scaffold_28 - intron 4440911-4440975 asmbl_37531 scaffold_28 - retained_intron 4440911-4440975 asmbl_37530 // Exon Skipping and Retention # skipped_exon 4558423-4559051 (orient:-) max_ev_support = 2 # retained_exon 4558738-4558973 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 4558738-4558973 asmbl_37536 scaffold_28 - intron_skips_exon 4558423-4559051 asmbl_37535 // Retained and Spliced Intron # retained_intron 4562120-4562213 (orient:-) max_ev_support = 3 # spliced_intron 4562120-4562213 (orient:-) max_ev_support = 3 scaffold_28 - intron 4562120-4562213 asmbl_37537,asmbl_37539 scaffold_28 - retained_intron 4562120-4562213 asmbl_37538 // Retained and Spliced Intron # retained_intron 4875335-4875549 (orient:-) max_ev_support = 2 # spliced_intron 4875335-4875549 (orient:-) max_ev_support = 3 scaffold_28 - intron 4875335-4875549 asmbl_37549,asmbl_37550 scaffold_28 - retained_intron 4875335-4875549 asmbl_37551 // Retained and Spliced Intron # retained_intron 5228162-5228266 (orient:-) max_ev_support = 1 # spliced_intron 5228162-5228266 (orient:-) max_ev_support = 2 scaffold_28 - intron 5228162-5228266 asmbl_37581,asmbl_37584 scaffold_28 - retained_intron 5228162-5228266 asmbl_37579 // Retained and Spliced Intron # retained_intron 5228162-5228281 (orient:-) max_ev_support = 1 # spliced_intron 5228162-5228281 (orient:-) max_ev_support = 1 scaffold_28 - intron 5228162-5228281 asmbl_37583,asmbl_37585 scaffold_28 - retained_intron 5228162-5228281 asmbl_37579 // Retained and Spliced Intron # retained_intron 5230739-5230823 (orient:-) max_ev_support = 1 # spliced_intron 5230739-5230823 (orient:-) max_ev_support = 2 scaffold_28 - intron 5230739-5230823 asmbl_37582 scaffold_28 - retained_intron 5230739-5230823 asmbl_37585 // Retained and Spliced Intron # retained_intron 5238035-5238122 (orient:-) max_ev_support = 2 # spliced_intron 5238035-5238122 (orient:-) max_ev_support = 2 scaffold_28 - intron 5238035-5238122 asmbl_37589,asmbl_37591,asmbl_37594 scaffold_28 - retained_intron 5238035-5238122 asmbl_37588,asmbl_37593 // Retained and Spliced Intron # retained_intron 5234854-5235055 (orient:-) max_ev_support = 2 # spliced_intron 5234854-5235055 (orient:-) max_ev_support = 2 scaffold_28 - intron 5234854-5235055 asmbl_37588,asmbl_37589,asmbl_37592,asmbl_37593,asmbl_37594,asmbl_37595 scaffold_28 - retained_intron 5234854-5235055 asmbl_37590 // Retained and Spliced Intron # retained_intron 5237564-5237680 (orient:-) max_ev_support = 1 # spliced_intron 5237564-5237680 (orient:-) max_ev_support = 2 scaffold_28 - intron 5237564-5237680 asmbl_37588,asmbl_37589,asmbl_37593,asmbl_37594 scaffold_28 - retained_intron 5237564-5237680 asmbl_37592,asmbl_37595 // Retained and Spliced Intron # retained_intron 5233036-5233314 (orient:-) max_ev_support = 1 # spliced_intron 5233036-5233314 (orient:-) max_ev_support = 2 scaffold_28 - intron 5233036-5233314 asmbl_37588,asmbl_37589,asmbl_37592,asmbl_37593 scaffold_28 - retained_intron 5233036-5233314 asmbl_37594,asmbl_37595 // Retained and Spliced Intron # retained_intron 5249878-5250166 (orient:-) max_ev_support = 1 # spliced_intron 5249878-5250166 (orient:-) max_ev_support = 2 scaffold_28 - intron 5249878-5250166 asmbl_37596,asmbl_37598 scaffold_28 - retained_intron 5249878-5250166 asmbl_37599 // Retained and Spliced Intron # retained_intron 5358747-5358813 (orient:-) max_ev_support = 1 # spliced_intron 5358747-5358813 (orient:-) max_ev_support = 2 scaffold_28 - intron 5358747-5358813 asmbl_37609 scaffold_28 - retained_intron 5358747-5358813 asmbl_37610 // Retained and Spliced Intron # retained_intron 5358871-5358960 (orient:-) max_ev_support = 1 # spliced_intron 5358871-5358960 (orient:-) max_ev_support = 2 scaffold_28 - intron 5358871-5358960 asmbl_37609 scaffold_28 - retained_intron 5358871-5358960 asmbl_37610 // Exon Skipping and Retention # skipped_exon 5361539-5362274 (orient:-) max_ev_support = 1 # retained_exon 5361810-5361968 (orient:-) max_ev_support = 3 scaffold_28 - retained_exons 5361810-5361968 asmbl_37611 scaffold_28 - intron_skips_exon 5361539-5362274 asmbl_37612 // Retained and Spliced Intron # retained_intron 5611216-5611353 (orient:-) max_ev_support = 2 # spliced_intron 5611216-5611353 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611216-5611353 asmbl_37624,asmbl_37627 scaffold_28 - retained_intron 5611216-5611353 asmbl_37621,asmbl_37622,asmbl_37625,asmbl_37626 // Retained and Spliced Intron # retained_intron 5611216-5611372 (orient:-) max_ev_support = 2 # spliced_intron 5611216-5611372 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611216-5611372 asmbl_37623 scaffold_28 - retained_intron 5611216-5611372 asmbl_37621,asmbl_37622,asmbl_37625,asmbl_37626 // Retained and Spliced Intron # retained_intron 5611496-5611679 (orient:-) max_ev_support = 3 # spliced_intron 5611496-5611679 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611496-5611679 asmbl_37624,asmbl_37625 scaffold_28 - retained_intron 5611496-5611679 asmbl_37621,asmbl_37622,asmbl_37623,asmbl_37626,asmbl_37627 // Retained and Spliced Intron # retained_intron 5611858-5612155 (orient:-) max_ev_support = 3 # spliced_intron 5611858-5612155 (orient:-) max_ev_support = 3 scaffold_28 - intron 5611858-5612155 asmbl_37621 scaffold_28 - retained_intron 5611858-5612155 asmbl_37622 // Retained and Spliced Intron # retained_intron 5638196-5638636 (orient:-) max_ev_support = 1 # spliced_intron 5638196-5638636 (orient:-) max_ev_support = 3 scaffold_28 - intron 5638196-5638636 asmbl_37630,asmbl_37631,asmbl_37634,asmbl_37637 scaffold_28 - retained_intron 5638196-5638636 asmbl_37635,asmbl_37636 // Retained and Spliced Intron # retained_intron 5735192-5735278 (orient:-) max_ev_support = 3 # spliced_intron 5735192-5735278 (orient:-) max_ev_support = 3 scaffold_28 - intron 5735192-5735278 asmbl_37642 scaffold_28 - retained_intron 5735192-5735278 asmbl_37643 // Retained and Spliced Intron # retained_intron 6515478-6515563 (orient:-) max_ev_support = 1 # spliced_intron 6515478-6515563 (orient:-) max_ev_support = 1 scaffold_28 - intron 6515478-6515563 asmbl_37675 scaffold_28 - retained_intron 6515478-6515563 asmbl_37672,asmbl_37674 // Retained and Spliced Intron # retained_intron 6515507-6515534 (orient:-) max_ev_support = 1 # spliced_intron 6515507-6515534 (orient:-) max_ev_support = 1 scaffold_28 - intron 6515507-6515534 asmbl_37673 scaffold_28 - retained_intron 6515507-6515534 asmbl_37672,asmbl_37674 // Exon Skipping and Retention # skipped_exon 6546537-6547929 (orient:-) max_ev_support = 1 # retained_exon 6546833-6547549 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6546833-6546895,6547487-6547549 asmbl_37678,asmbl_37681 scaffold_28 - intron_skips_exon 6546537-6547929 asmbl_37680 // Exon Skipping and Retention # skipped_exon 6546896-6548299 (orient:-) max_ev_support = 1 # retained_exon 6547487-6548040 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6547487-6547549,6547930-6548040 asmbl_37678 scaffold_28 - intron_skips_exon 6546896-6548299 asmbl_37679 // Exon Skipping and Retention # skipped_exon 6547550-6548299 (orient:-) max_ev_support = 1 # retained_exon 6547930-6548040 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 6547930-6548040 asmbl_37680,asmbl_37678 scaffold_28 - intron_skips_exon 6547550-6548299 asmbl_37681 // Retained and Spliced Intron # retained_intron 6557835-6557938 (orient:-) max_ev_support = 1 # spliced_intron 6557835-6557938 (orient:-) max_ev_support = 2 scaffold_28 - intron 6557835-6557938 asmbl_37685,asmbl_37686 scaffold_28 - retained_intron 6557835-6557938 asmbl_37687,asmbl_37688 // Retained and Spliced Intron # retained_intron 6926010-6926670 (orient:-) max_ev_support = 3 # spliced_intron 6926010-6926670 (orient:-) max_ev_support = 2 scaffold_28 - intron 6926010-6926670 asmbl_37693 scaffold_28 - retained_intron 6926010-6926670 asmbl_37691 // Retained and Spliced Intron # retained_intron 6926103-6926670 (orient:-) max_ev_support = 3 # spliced_intron 6926103-6926670 (orient:-) max_ev_support = 2 scaffold_28 - intron 6926103-6926670 asmbl_37692 scaffold_28 - retained_intron 6926103-6926670 asmbl_37691 // Retained and Spliced Intron # retained_intron 7305588-7306228 (orient:-) max_ev_support = 1 # spliced_intron 7305588-7306228 (orient:-) max_ev_support = 1 scaffold_28 - intron 7305588-7306228 asmbl_37721 scaffold_28 - retained_intron 7305588-7306228 asmbl_37720,asmbl_37722 // Retained and Spliced Intron # retained_intron 7421600-7421706 (orient:-) max_ev_support = 1 # spliced_intron 7421600-7421706 (orient:-) max_ev_support = 2 scaffold_28 - intron 7421600-7421706 asmbl_37728 scaffold_28 - retained_intron 7421600-7421706 asmbl_37729 // Retained and Spliced Intron # retained_intron 7421777-7421872 (orient:-) max_ev_support = 1 # spliced_intron 7421777-7421872 (orient:-) max_ev_support = 2 scaffold_28 - intron 7421777-7421872 asmbl_37728 scaffold_28 - retained_intron 7421777-7421872 asmbl_37729 // Exon Skipping and Retention # skipped_exon 7746453-7747360 (orient:-) max_ev_support = 1 # retained_exon 7746842-7747034 (orient:-) max_ev_support = 2 scaffold_28 - retained_exons 7746842-7747034 asmbl_37736 scaffold_28 - intron_skips_exon 7746453-7747360 asmbl_37738 // Exon Skipping and Retention # skipped_exon 7747035-7748172 (orient:-) max_ev_support = 2 # retained_exon 7747361-7747553 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 7747361-7747553 asmbl_37738 scaffold_28 - intron_skips_exon 7747035-7748172 asmbl_37736 // Exon Skipping and Retention # skipped_exon 7880365-7880912 (orient:-) max_ev_support = 2 # retained_exon 7880680-7880694 (orient:-) max_ev_support = 1 scaffold_28 - retained_exons 7880680-7880694 asmbl_37757,asmbl_37759 scaffold_28 - intron_skips_exon 7880365-7880912 asmbl_37756 // Retained and Spliced Intron # retained_intron 9115472-9115873 (orient:-) max_ev_support = 2 # spliced_intron 9115472-9115873 (orient:-) max_ev_support = 2 scaffold_28 - intron 9115472-9115873 asmbl_37819 scaffold_28 - retained_intron 9115472-9115873 asmbl_37820,asmbl_37821 // Retained and Spliced Intron # retained_intron 9225871-9225909 (orient:-) max_ev_support = 3 # spliced_intron 9225871-9225909 (orient:-) max_ev_support = 2 scaffold_28 - intron 9225871-9225909 asmbl_37827 scaffold_28 - retained_intron 9225871-9225909 asmbl_37826,asmbl_37828 // Retained and Spliced Intron # retained_intron 9225948-9226024 (orient:-) max_ev_support = 3 # spliced_intron 9225948-9226024 (orient:-) max_ev_support = 1 scaffold_28 - intron 9225948-9226024 asmbl_37828 scaffold_28 - retained_intron 9225948-9226024 asmbl_37826,asmbl_37827 // Retained and Spliced Intron # retained_intron 9441074-9441164 (orient:-) max_ev_support = 1 # spliced_intron 9441074-9441164 (orient:-) max_ev_support = 1 scaffold_28 - intron 9441074-9441164 asmbl_37843 scaffold_28 - retained_intron 9441074-9441164 asmbl_37842 // Retained and Spliced Intron # retained_intron 9441283-9441479 (orient:-) max_ev_support = 1 # spliced_intron 9441283-9441479 (orient:-) max_ev_support = 1 scaffold_28 - intron 9441283-9441479 asmbl_37843 scaffold_28 - retained_intron 9441283-9441479 asmbl_37842 // Retained and Spliced Intron # retained_intron 232029-232185 (orient:+) max_ev_support = 1 # spliced_intron 232029-232185 (orient:+) max_ev_support = 1 scaffold_28 + intron 232029-232185 asmbl_37949,asmbl_37951,asmbl_37952,asmbl_37953 scaffold_28 + retained_intron 232029-232185 asmbl_37950 // Retained and Spliced Intron # retained_intron 233915-233981 (orient:+) max_ev_support = 1 # spliced_intron 233915-233981 (orient:+) max_ev_support = 1 scaffold_28 + intron 233915-233981 asmbl_37949,asmbl_37950,asmbl_37951,asmbl_37954 scaffold_28 + retained_intron 233915-233981 asmbl_37952,asmbl_37953 // Retained and Spliced Intron # retained_intron 233644-233732 (orient:+) max_ev_support = 1 # spliced_intron 233644-233732 (orient:+) max_ev_support = 1 scaffold_28 + intron 233644-233732 asmbl_37949,asmbl_37950,asmbl_37951,asmbl_37952 scaffold_28 + retained_intron 233644-233732 asmbl_37953,asmbl_37954 // Retained and Spliced Intron # retained_intron 293837-294231 (orient:+) max_ev_support = 2 # spliced_intron 293837-294231 (orient:+) max_ev_support = 2 scaffold_28 + intron 293837-294231 asmbl_37961 scaffold_28 + retained_intron 293837-294231 asmbl_37962 // Retained and Spliced Intron # retained_intron 294106-294231 (orient:+) max_ev_support = 2 # spliced_intron 294106-294231 (orient:+) max_ev_support = 1 scaffold_28 + intron 294106-294231 asmbl_37963,asmbl_37964 scaffold_28 + retained_intron 294106-294231 asmbl_37962 // Retained and Spliced Intron # retained_intron 295538-295617 (orient:+) max_ev_support = 1 # spliced_intron 295538-295617 (orient:+) max_ev_support = 2 scaffold_28 + intron 295538-295617 asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964 scaffold_28 + retained_intron 295538-295617 asmbl_37965 // Retained and Spliced Intron # retained_intron 295738-295857 (orient:+) max_ev_support = 1 # spliced_intron 295738-295857 (orient:+) max_ev_support = 2 scaffold_28 + intron 295738-295857 asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964 scaffold_28 + retained_intron 295738-295857 asmbl_37965 // Retained and Spliced Intron # retained_intron 295957-296054 (orient:+) max_ev_support = 1 # spliced_intron 295957-296054 (orient:+) max_ev_support = 2 scaffold_28 + intron 295957-296054 asmbl_37961,asmbl_37962,asmbl_37963,asmbl_37964 scaffold_28 + retained_intron 295957-296054 asmbl_37965 // Retained and Spliced Intron # retained_intron 414159-414254 (orient:+) max_ev_support = 3 # spliced_intron 414159-414254 (orient:+) max_ev_support = 1 scaffold_28 + intron 414159-414254 asmbl_37972 scaffold_28 + retained_intron 414159-414254 asmbl_37971 // Exon Skipping and Retention # skipped_exon 1410352-1411350 (orient:+) max_ev_support = 1 # retained_exon 1410626-1410745 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 1410626-1410745 asmbl_37999 scaffold_28 + intron_skips_exon 1410352-1411350 asmbl_38000 // Retained and Spliced Intron # retained_intron 2109125-2109263 (orient:+) max_ev_support = 1 # spliced_intron 2109125-2109263 (orient:+) max_ev_support = 1 scaffold_28 + intron 2109125-2109263 asmbl_38017 scaffold_28 + retained_intron 2109125-2109263 asmbl_38018 // Retained and Spliced Intron # retained_intron 2198918-2199018 (orient:+) max_ev_support = 2 # spliced_intron 2198918-2199018 (orient:+) max_ev_support = 2 scaffold_28 + intron 2198918-2199018 asmbl_38038,asmbl_38041 scaffold_28 + retained_intron 2198918-2199018 asmbl_38039,asmbl_38040 // Retained and Spliced Intron # retained_intron 2199808-2199837 (orient:+) max_ev_support = 4 # spliced_intron 2199808-2199837 (orient:+) max_ev_support = 1 scaffold_28 + intron 2199808-2199837 asmbl_38044 scaffold_28 + retained_intron 2199808-2199837 asmbl_38042,asmbl_38043 // Retained and Spliced Intron # retained_intron 2199318-2199412 (orient:+) max_ev_support = 3 # spliced_intron 2199318-2199412 (orient:+) max_ev_support = 2 scaffold_28 + intron 2199318-2199412 asmbl_38042,asmbl_38044 scaffold_28 + retained_intron 2199318-2199412 asmbl_38043 // Retained and Spliced Intron # retained_intron 2404241-2404447 (orient:+) max_ev_support = 2 # spliced_intron 2404241-2404447 (orient:+) max_ev_support = 2 scaffold_28 + intron 2404241-2404447 asmbl_38058,asmbl_38059,asmbl_38060 scaffold_28 + retained_intron 2404241-2404447 asmbl_38057,asmbl_38061,asmbl_38062 // Retained and Spliced Intron # retained_intron 2622616-2622713 (orient:+) max_ev_support = 1 # spliced_intron 2622616-2622713 (orient:+) max_ev_support = 2 scaffold_28 + intron 2622616-2622713 asmbl_38083 scaffold_28 + retained_intron 2622616-2622713 asmbl_38084 // Exon Skipping and Retention # skipped_exon 2641399-2643017 (orient:+) max_ev_support = 3 # retained_exon 2642632-2642744 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 2642632-2642744 asmbl_38086 scaffold_28 + intron_skips_exon 2641399-2643017 asmbl_38087,asmbl_38088 // Retained and Spliced Intron # retained_intron 2651234-2651332 (orient:+) max_ev_support = 5 # spliced_intron 2651234-2651332 (orient:+) max_ev_support = 1 scaffold_28 + intron 2651234-2651332 asmbl_38091 scaffold_28 + retained_intron 2651234-2651332 asmbl_38090 // Retained and Spliced Intron # retained_intron 2721160-2721312 (orient:+) max_ev_support = 2 # spliced_intron 2721160-2721312 (orient:+) max_ev_support = 2 scaffold_28 + intron 2721160-2721312 asmbl_38102 scaffold_28 + retained_intron 2721160-2721312 asmbl_38101,asmbl_38103,asmbl_38104,asmbl_38105 // Retained and Spliced Intron # retained_intron 2724883-2725090 (orient:+) max_ev_support = 3 # spliced_intron 2724883-2725090 (orient:+) max_ev_support = 2 scaffold_28 + intron 2724883-2725090 asmbl_38102,asmbl_38103 scaffold_28 + retained_intron 2724883-2725090 asmbl_38101 // Retained and Spliced Intron # retained_intron 2724505-2724705 (orient:+) max_ev_support = 1 # spliced_intron 2724505-2724705 (orient:+) max_ev_support = 2 scaffold_28 + intron 2724505-2724705 asmbl_38101,asmbl_38102,asmbl_38103 scaffold_28 + retained_intron 2724505-2724705 asmbl_38105 // Retained and Spliced Intron # retained_intron 3168895-3169011 (orient:+) max_ev_support = 3 # spliced_intron 3168895-3169011 (orient:+) max_ev_support = 2 scaffold_28 + intron 3168895-3169011 asmbl_38146 scaffold_28 + retained_intron 3168895-3169011 asmbl_38144,asmbl_38145 // Exon Skipping and Retention # skipped_exon 3320505-3322855 (orient:+) max_ev_support = 2 # retained_exon 3321404-3321493 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3321404-3321493 asmbl_38167 scaffold_28 + intron_skips_exon 3320505-3322855 asmbl_38166 // Exon Skipping and Retention # skipped_exon 3389665-3390454 (orient:+) max_ev_support = 1 # retained_exon 3389756-3389854 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 3389756-3389854 asmbl_38174 scaffold_28 + intron_skips_exon 3389665-3390454 asmbl_38173,asmbl_38175 // Exon Skipping and Retention # skipped_exon 3839816-3840769 (orient:+) max_ev_support = 2 # retained_exon 3839986-3840025 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 3839986-3840025 asmbl_38186 scaffold_28 + intron_skips_exon 3839816-3840769 asmbl_38187 // Retained and Spliced Intron # retained_intron 3968426-3968455 (orient:+) max_ev_support = 1 # spliced_intron 3968426-3968455 (orient:+) max_ev_support = 1 scaffold_28 + intron 3968426-3968455 asmbl_38203 scaffold_28 + retained_intron 3968426-3968455 asmbl_38204 // Retained and Spliced Intron # retained_intron 4267785-4268006 (orient:+) max_ev_support = 2 # spliced_intron 4267785-4268006 (orient:+) max_ev_support = 3 scaffold_28 + intron 4267785-4268006 asmbl_38227 scaffold_28 + retained_intron 4267785-4268006 asmbl_38228 // Retained and Spliced Intron # retained_intron 4838972-4839218 (orient:+) max_ev_support = 4 # spliced_intron 4838972-4839218 (orient:+) max_ev_support = 3 scaffold_28 + intron 4838972-4839218 asmbl_38245 scaffold_28 + retained_intron 4838972-4839218 asmbl_38243,asmbl_38244 // Retained and Spliced Intron # retained_intron 4839616-4841649 (orient:+) max_ev_support = 3 # spliced_intron 4839616-4841649 (orient:+) max_ev_support = 4 scaffold_28 + intron 4839616-4841649 asmbl_38244 scaffold_28 + retained_intron 4839616-4841649 asmbl_38243,asmbl_38245 // Exon Skipping and Retention # skipped_exon 5014513-5014754 (orient:+) max_ev_support = 3 # retained_exon 5014596-5014675 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5014596-5014675 asmbl_38250,asmbl_38252 scaffold_28 + intron_skips_exon 5014513-5014754 asmbl_38251 // Retained and Spliced Intron # retained_intron 5011999-5012133 (orient:+) max_ev_support = 2 # spliced_intron 5011999-5012133 (orient:+) max_ev_support = 1 scaffold_28 + intron 5011999-5012133 asmbl_38250,asmbl_38255,asmbl_38256 scaffold_28 + retained_intron 5011999-5012133 asmbl_38253 // Retained and Spliced Intron # retained_intron 5014513-5014595 (orient:+) max_ev_support = 2 # spliced_intron 5014513-5014595 (orient:+) max_ev_support = 3 scaffold_28 + intron 5014513-5014595 asmbl_38250,asmbl_38252,asmbl_38253,asmbl_38255,asmbl_38256 scaffold_28 + retained_intron 5014513-5014595 asmbl_38254,asmbl_38257 // Retained and Spliced Intron # retained_intron 5014513-5014754 (orient:+) max_ev_support = 2 # spliced_intron 5014513-5014754 (orient:+) max_ev_support = 3 scaffold_28 + intron 5014513-5014754 asmbl_38251 scaffold_28 + retained_intron 5014513-5014754 asmbl_38254 // Retained and Spliced Intron # retained_intron 5014676-5014754 (orient:+) max_ev_support = 2 # spliced_intron 5014676-5014754 (orient:+) max_ev_support = 3 scaffold_28 + intron 5014676-5014754 asmbl_38250,asmbl_38252,asmbl_38257 scaffold_28 + retained_intron 5014676-5014754 asmbl_38254 // Retained and Spliced Intron # retained_intron 5010558-5011216 (orient:+) max_ev_support = 1 # spliced_intron 5010558-5011216 (orient:+) max_ev_support = 1 scaffold_28 + intron 5010558-5011216 asmbl_38250,asmbl_38256 scaffold_28 + retained_intron 5010558-5011216 asmbl_38255 // Exon Skipping and Retention # skipped_exon 5026973-5028451 (orient:+) max_ev_support = 2 # retained_exon 5027609-5027705 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5027609-5027705 asmbl_38258,asmbl_38259,asmbl_38260,asmbl_38266 scaffold_28 + intron_skips_exon 5026973-5028451 asmbl_38261 // Retained and Spliced Intron # retained_intron 5024052-5024125 (orient:+) max_ev_support = 3 # spliced_intron 5024052-5024125 (orient:+) max_ev_support = 2 scaffold_28 + intron 5024052-5024125 asmbl_38258,asmbl_38260,asmbl_38266 scaffold_28 + retained_intron 5024052-5024125 asmbl_38259,asmbl_38265 // Retained and Spliced Intron # retained_intron 5024248-5024400 (orient:+) max_ev_support = 3 # spliced_intron 5024248-5024400 (orient:+) max_ev_support = 2 scaffold_28 + intron 5024248-5024400 asmbl_38258,asmbl_38260,asmbl_38266 scaffold_28 + retained_intron 5024248-5024400 asmbl_38259 // Retained and Spliced Intron # retained_intron 5022371-5022502 (orient:+) max_ev_support = 1 # spliced_intron 5022371-5022502 (orient:+) max_ev_support = 1 scaffold_28 + intron 5022371-5022502 asmbl_38258 scaffold_28 + retained_intron 5022371-5022502 asmbl_38260 // Exon Skipping and Retention # skipped_exon 5390808-5391169 (orient:+) max_ev_support = 2 # retained_exon 5391043-5391083 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5391043-5391083 asmbl_38279,asmbl_38284 scaffold_28 + intron_skips_exon 5390808-5391169 asmbl_38282 // Exon Skipping and Retention # skipped_exon 5390808-5391483 (orient:+) max_ev_support = 2 # retained_exon 5391043-5391381 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 5391043-5391083,5391170-5391381 asmbl_38279,asmbl_38284 scaffold_28 + intron_skips_exon 5390808-5391483 asmbl_38281,asmbl_38283 // Retained and Spliced Intron # retained_intron 5390808-5391042 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391042 (orient:+) max_ev_support = 3 scaffold_28 + intron 5390808-5391042 asmbl_38279,asmbl_38284,asmbl_38285 scaffold_28 + retained_intron 5390808-5391042 asmbl_38280 // Retained and Spliced Intron # retained_intron 5390808-5391169 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391169 (orient:+) max_ev_support = 2 scaffold_28 + intron 5390808-5391169 asmbl_38282 scaffold_28 + retained_intron 5390808-5391169 asmbl_38280 // Retained and Spliced Intron # retained_intron 5390808-5391483 (orient:+) max_ev_support = 3 # spliced_intron 5390808-5391483 (orient:+) max_ev_support = 2 scaffold_28 + intron 5390808-5391483 asmbl_38281,asmbl_38283 scaffold_28 + retained_intron 5390808-5391483 asmbl_38280 // Retained and Spliced Intron # retained_intron 5391084-5391169 (orient:+) max_ev_support = 3 # spliced_intron 5391084-5391169 (orient:+) max_ev_support = 3 scaffold_28 + intron 5391084-5391169 asmbl_38279,asmbl_38284 scaffold_28 + retained_intron 5391084-5391169 asmbl_38280,asmbl_38285 // Retained and Spliced Intron # retained_intron 5391382-5391483 (orient:+) max_ev_support = 1 # spliced_intron 5391382-5391483 (orient:+) max_ev_support = 3 scaffold_28 + intron 5391382-5391483 asmbl_38279,asmbl_38282,asmbl_38284 scaffold_28 + retained_intron 5391382-5391483 asmbl_38280 // Retained and Spliced Intron # retained_intron 5730864-5730935 (orient:+) max_ev_support = 3 # spliced_intron 5730864-5730935 (orient:+) max_ev_support = 3 scaffold_28 + intron 5730864-5730935 asmbl_38297 scaffold_28 + retained_intron 5730864-5730935 asmbl_38298 // Retained and Spliced Intron # retained_intron 5755532-5756003 (orient:+) max_ev_support = 2 # spliced_intron 5755532-5756003 (orient:+) max_ev_support = 3 scaffold_28 + intron 5755532-5756003 asmbl_38300 scaffold_28 + retained_intron 5755532-5756003 asmbl_38301 // Retained and Spliced Intron # retained_intron 5755662-5756003 (orient:+) max_ev_support = 2 # spliced_intron 5755662-5756003 (orient:+) max_ev_support = 3 scaffold_28 + intron 5755662-5756003 asmbl_38299 scaffold_28 + retained_intron 5755662-5756003 asmbl_38301 // Retained and Spliced Intron # retained_intron 7156851-7156991 (orient:+) max_ev_support = 1 # spliced_intron 7156851-7156991 (orient:+) max_ev_support = 2 scaffold_28 + intron 7156851-7156991 asmbl_38329,asmbl_38330,asmbl_38331,asmbl_38332 scaffold_28 + retained_intron 7156851-7156991 asmbl_38333,asmbl_38334 // Exon Skipping and Retention # skipped_exon 7228838-7230748 (orient:+) max_ev_support = 1 # retained_exon 7229350-7229926 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7229350-7229487,7229758-7229926 asmbl_38335 scaffold_28 + intron_skips_exon 7228838-7230748 asmbl_38336 // Retained and Spliced Intron # retained_intron 7234745-7235090 (orient:+) max_ev_support = 3 # spliced_intron 7234745-7235090 (orient:+) max_ev_support = 1 scaffold_28 + intron 7234745-7235090 asmbl_38340 scaffold_28 + retained_intron 7234745-7235090 asmbl_38338 // Exon Skipping and Retention # skipped_exon 7234548-7235090 (orient:+) max_ev_support = 2 # retained_exon 7234724-7234744 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 7234724-7234744 asmbl_38340 scaffold_28 + intron_skips_exon 7234548-7235090 asmbl_38339 // Exon Skipping and Retention # skipped_exon 7237911-7238320 (orient:+) max_ev_support = 2 # retained_exon 7238011-7238146 (orient:+) max_ev_support = 2 scaffold_28 + retained_exons 7238011-7238146 asmbl_38342 scaffold_28 + intron_skips_exon 7237911-7238320 asmbl_38341 // Retained and Spliced Intron # retained_intron 7359508-7359739 (orient:+) max_ev_support = 2 # spliced_intron 7359508-7359739 (orient:+) max_ev_support = 2 scaffold_28 + intron 7359508-7359739 asmbl_38362 scaffold_28 + retained_intron 7359508-7359739 asmbl_38363 // Retained and Spliced Intron # retained_intron 7438245-7438344 (orient:+) max_ev_support = 2 # spliced_intron 7438245-7438344 (orient:+) max_ev_support = 2 scaffold_28 + intron 7438245-7438344 asmbl_38375 scaffold_28 + retained_intron 7438245-7438344 asmbl_38374 // Retained and Spliced Intron # retained_intron 7528910-7529100 (orient:+) max_ev_support = 1 # spliced_intron 7528910-7529100 (orient:+) max_ev_support = 2 scaffold_28 + intron 7528910-7529100 asmbl_38383,asmbl_38386 scaffold_28 + retained_intron 7528910-7529100 asmbl_38385 // Retained and Spliced Intron # retained_intron 7721599-7722019 (orient:+) max_ev_support = 1 # spliced_intron 7721599-7722019 (orient:+) max_ev_support = 2 scaffold_28 + intron 7721599-7722019 asmbl_38397,asmbl_38398,asmbl_38400,asmbl_38402 scaffold_28 + retained_intron 7721599-7722019 asmbl_38403 // Retained and Spliced Intron # retained_intron 8030132-8030254 (orient:+) max_ev_support = 1 # spliced_intron 8030132-8030254 (orient:+) max_ev_support = 1 scaffold_28 + intron 8030132-8030254 asmbl_38411 scaffold_28 + retained_intron 8030132-8030254 asmbl_38412 // Retained and Spliced Intron # retained_intron 8051811-8052141 (orient:+) max_ev_support = 2 # spliced_intron 8051811-8052141 (orient:+) max_ev_support = 3 scaffold_28 + intron 8051811-8052141 asmbl_38413 scaffold_28 + retained_intron 8051811-8052141 asmbl_38414 // Retained and Spliced Intron # retained_intron 8276719-8276800 (orient:+) max_ev_support = 2 # spliced_intron 8276719-8276800 (orient:+) max_ev_support = 1 scaffold_28 + intron 8276719-8276800 asmbl_38432 scaffold_28 + retained_intron 8276719-8276800 asmbl_38431 // Exon Skipping and Retention # skipped_exon 8412619-8414892 (orient:+) max_ev_support = 2 # retained_exon 8413200-8413268 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 8413200-8413268 asmbl_38439 scaffold_28 + intron_skips_exon 8412619-8414892 asmbl_38440 // Exon Skipping and Retention # skipped_exon 8412619-8414931 (orient:+) max_ev_support = 1 # retained_exon 8413200-8413268 (orient:+) max_ev_support = 3 scaffold_28 + retained_exons 8413200-8413268 asmbl_38439 scaffold_28 + intron_skips_exon 8412619-8414931 asmbl_38441 // Retained and Spliced Intron # retained_intron 8422122-8422142 (orient:+) max_ev_support = 3 # spliced_intron 8422122-8422142 (orient:+) max_ev_support = 1 scaffold_28 + intron 8422122-8422142 asmbl_38443 scaffold_28 + retained_intron 8422122-8422142 asmbl_38442 // Retained and Spliced Intron # retained_intron 8481657-8481677 (orient:+) max_ev_support = 2 # spliced_intron 8481657-8481677 (orient:+) max_ev_support = 1 scaffold_28 + intron 8481657-8481677 asmbl_38448 scaffold_28 + retained_intron 8481657-8481677 asmbl_38447 // Exon Skipping and Retention # skipped_exon 9268494-9269691 (orient:+) max_ev_support = 3 # retained_exon 9268985-9269134 (orient:+) max_ev_support = 1 scaffold_28 + retained_exons 9268985-9269134 asmbl_38474 scaffold_28 + intron_skips_exon 9268494-9269691 asmbl_38472 // Retained and Spliced Intron # retained_intron 9641239-9641325 (orient:+) max_ev_support = 1 # spliced_intron 9641239-9641325 (orient:+) max_ev_support = 5 scaffold_28 + intron 9641239-9641325 asmbl_38492 scaffold_28 + retained_intron 9641239-9641325 asmbl_38493 // Retained and Spliced Intron # retained_intron 9681871-9681946 (orient:+) max_ev_support = 1 # spliced_intron 9681871-9681946 (orient:+) max_ev_support = 2 scaffold_28 + intron 9681871-9681946 asmbl_38496,asmbl_38497 scaffold_28 + retained_intron 9681871-9681946 asmbl_38498 // Retained and Spliced Intron # retained_intron 9808981-9809004 (orient:+) max_ev_support = 3 # spliced_intron 9808981-9809004 (orient:+) max_ev_support = 1 scaffold_28 + intron 9808981-9809004 asmbl_38506 scaffold_28 + retained_intron 9808981-9809004 asmbl_38505 // Retained and Spliced Intron # retained_intron 56911-57031 (orient:+) max_ev_support = 3 # spliced_intron 56911-57031 (orient:+) max_ev_support = 1 scaffold_29 + intron 56911-57031 asmbl_38594 scaffold_29 + retained_intron 56911-57031 asmbl_38593 // Exon Skipping and Retention # skipped_exon 743-2048 (orient:-) max_ev_support = 2 # retained_exon 1776-1793 (orient:-) max_ev_support = 1 scaffold_298 - retained_exons 1776-1793 asmbl_38615 scaffold_298 - intron_skips_exon 743-2048 asmbl_38614,asmbl_38616 // Retained and Spliced Intron # retained_intron 800441-800585 (orient:-) max_ev_support = 3 # spliced_intron 800441-800585 (orient:-) max_ev_support = 2 scaffold_3 - intron 800441-800585 asmbl_38633,asmbl_38634 scaffold_3 - retained_intron 800441-800585 asmbl_38632 // Exon Skipping and Retention # skipped_exon 935338-937335 (orient:-) max_ev_support = 1 # retained_exon 935830-935956 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 935830-935956 asmbl_38640 scaffold_3 - intron_skips_exon 935338-937335 asmbl_38643 // Retained and Spliced Intron # retained_intron 935722-935829 (orient:-) max_ev_support = 2 # spliced_intron 935722-935829 (orient:-) max_ev_support = 2 scaffold_3 - intron 935722-935829 asmbl_38640 scaffold_3 - retained_intron 935722-935829 asmbl_38641 // Retained and Spliced Intron # retained_intron 1268754-1268964 (orient:-) max_ev_support = 3 # spliced_intron 1268754-1268964 (orient:-) max_ev_support = 1 scaffold_3 - intron 1268754-1268964 asmbl_38659 scaffold_3 - retained_intron 1268754-1268964 asmbl_38658 // Exon Skipping and Retention # skipped_exon 1424842-1427732 (orient:-) max_ev_support = 1 # retained_exon 1426199-1426319 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 1426199-1426319 asmbl_38662 scaffold_3 - intron_skips_exon 1424842-1427732 asmbl_38663 // Exon Skipping and Retention # skipped_exon 1423523-1426198 (orient:-) max_ev_support = 2 # retained_exon 1424721-1424841 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 1424721-1424841 asmbl_38663 scaffold_3 - intron_skips_exon 1423523-1426198 asmbl_38662 // Retained and Spliced Intron # retained_intron 1466208-1466551 (orient:-) max_ev_support = 2 # spliced_intron 1466208-1466551 (orient:-) max_ev_support = 2 scaffold_3 - intron 1466208-1466551 asmbl_38665 scaffold_3 - retained_intron 1466208-1466551 asmbl_38666 // Retained and Spliced Intron # retained_intron 1531004-1531031 (orient:-) max_ev_support = 3 # spliced_intron 1531004-1531031 (orient:-) max_ev_support = 1 scaffold_3 - intron 1531004-1531031 asmbl_38672 scaffold_3 - retained_intron 1531004-1531031 asmbl_38671 // Exon Skipping and Retention # skipped_exon 2182686-2183829 (orient:-) max_ev_support = 3 # retained_exon 2183328-2183412 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 2183328-2183412 asmbl_38690 scaffold_3 - intron_skips_exon 2182686-2183829 asmbl_38689 // Retained and Spliced Intron # retained_intron 3271219-3271370 (orient:-) max_ev_support = 2 # spliced_intron 3271219-3271370 (orient:-) max_ev_support = 1 scaffold_3 - intron 3271219-3271370 asmbl_38721,asmbl_38722 scaffold_3 - retained_intron 3271219-3271370 asmbl_38719 // Retained and Spliced Intron # retained_intron 3271219-3272019 (orient:-) max_ev_support = 2 # spliced_intron 3271219-3272019 (orient:-) max_ev_support = 2 scaffold_3 - intron 3271219-3272019 asmbl_38717,asmbl_38720 scaffold_3 - retained_intron 3271219-3272019 asmbl_38719 // Retained and Spliced Intron # retained_intron 3268072-3268486 (orient:-) max_ev_support = 1 # spliced_intron 3268072-3268486 (orient:-) max_ev_support = 2 scaffold_3 - intron 3268072-3268486 asmbl_38716,asmbl_38717,asmbl_38721 scaffold_3 - retained_intron 3268072-3268486 asmbl_38720 // Retained and Spliced Intron # retained_intron 4267463-4267695 (orient:-) max_ev_support = 5 # spliced_intron 4267463-4267695 (orient:-) max_ev_support = 1 scaffold_3 - intron 4267463-4267695 asmbl_38750 scaffold_3 - retained_intron 4267463-4267695 asmbl_38748,asmbl_38749 // Retained and Spliced Intron # retained_intron 4268351-4268565 (orient:-) max_ev_support = 3 # spliced_intron 4268351-4268565 (orient:-) max_ev_support = 3 scaffold_3 - intron 4268351-4268565 asmbl_38749 scaffold_3 - retained_intron 4268351-4268565 asmbl_38748 // Retained and Spliced Intron # retained_intron 4304531-4304555 (orient:-) max_ev_support = 1 # spliced_intron 4304531-4304555 (orient:-) max_ev_support = 1 scaffold_3 - intron 4304531-4304555 asmbl_38755 scaffold_3 - retained_intron 4304531-4304555 asmbl_38754 // Retained and Spliced Intron # retained_intron 5129399-5129745 (orient:-) max_ev_support = 2 # spliced_intron 5129399-5129745 (orient:-) max_ev_support = 2 scaffold_3 - intron 5129399-5129745 asmbl_38788 scaffold_3 - retained_intron 5129399-5129745 asmbl_38787 // Retained and Spliced Intron # retained_intron 5129399-5129760 (orient:-) max_ev_support = 2 # spliced_intron 5129399-5129760 (orient:-) max_ev_support = 2 scaffold_3 - intron 5129399-5129760 asmbl_38786 scaffold_3 - retained_intron 5129399-5129760 asmbl_38787 // Retained and Spliced Intron # retained_intron 5159772-5159888 (orient:-) max_ev_support = 2 # spliced_intron 5159772-5159888 (orient:-) max_ev_support = 1 scaffold_3 - intron 5159772-5159888 asmbl_38792 scaffold_3 - retained_intron 5159772-5159888 asmbl_38793 // Retained and Spliced Intron # retained_intron 5260258-5260560 (orient:-) max_ev_support = 2 # spliced_intron 5260258-5260560 (orient:-) max_ev_support = 2 scaffold_3 - intron 5260258-5260560 asmbl_38797,asmbl_38798,asmbl_38799 scaffold_3 - retained_intron 5260258-5260560 asmbl_38796 // Retained and Spliced Intron # retained_intron 5529821-5529991 (orient:-) max_ev_support = 1 # spliced_intron 5529821-5529991 (orient:-) max_ev_support = 1 scaffold_3 - intron 5529821-5529991 asmbl_38807 scaffold_3 - retained_intron 5529821-5529991 asmbl_38806 // Retained and Spliced Intron # retained_intron 5774678-5774814 (orient:-) max_ev_support = 3 # spliced_intron 5774678-5774814 (orient:-) max_ev_support = 1 scaffold_3 - intron 5774678-5774814 asmbl_38817,asmbl_38819 scaffold_3 - retained_intron 5774678-5774814 asmbl_38815,asmbl_38816,asmbl_38818 // Retained and Spliced Intron # retained_intron 5774893-5775417 (orient:-) max_ev_support = 3 # spliced_intron 5774893-5775417 (orient:-) max_ev_support = 1 scaffold_3 - intron 5774893-5775417 asmbl_38818,asmbl_38819 scaffold_3 - retained_intron 5774893-5775417 asmbl_38815,asmbl_38816,asmbl_38817 // Exon Skipping and Retention # skipped_exon 5927206-5928685 (orient:-) max_ev_support = 1 # retained_exon 5927361-5928299 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 5927361-5927422,5927546-5927618,5927855-5927910,5928005-5928052,5928150-5928299 asmbl_38826,asmbl_38828,asmbl_38829 scaffold_3 - intron_skips_exon 5927206-5928685 asmbl_38827 // Exon Skipping and Retention # skipped_exon 5928825-5929630 (orient:-) max_ev_support = 1 # retained_exon 5929029-5929153 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 5929029-5929153 asmbl_38826,asmbl_38827,asmbl_38829 scaffold_3 - intron_skips_exon 5928825-5929630 asmbl_38828 // Retained and Spliced Intron # retained_intron 5926294-5926496 (orient:-) max_ev_support = 1 # spliced_intron 5926294-5926496 (orient:-) max_ev_support = 2 scaffold_3 - intron 5926294-5926496 asmbl_38826,asmbl_38827,asmbl_38828,asmbl_38830 scaffold_3 - retained_intron 5926294-5926496 asmbl_38829 // Exon Skipping and Retention # skipped_exon 5951042-5951658 (orient:-) max_ev_support = 2 # retained_exon 5951166-5951453 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 5951166-5951453 asmbl_38833,asmbl_38834 scaffold_3 - intron_skips_exon 5951042-5951658 asmbl_38836,asmbl_38837 // Retained and Spliced Intron # retained_intron 6046201-6046335 (orient:-) max_ev_support = 1 # spliced_intron 6046201-6046335 (orient:-) max_ev_support = 1 scaffold_3 - intron 6046201-6046335 asmbl_38837 scaffold_3 - retained_intron 6046201-6046335 asmbl_38833,asmbl_38834,asmbl_38836 // Exon Skipping and Retention # skipped_exon 6037685-6039291 (orient:-) max_ev_support = 1 # retained_exon 6037861-6038979 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6037861-6037923,6038128-6038979 asmbl_38834,asmbl_38836,asmbl_38837 scaffold_3 - intron_skips_exon 6037685-6039291 asmbl_38833 // Exon Skipping and Retention # skipped_exon 6041931-6044119 (orient:-) max_ev_support = 1 # retained_exon 6042295-6043267 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6042295-6042354,6042734-6042778,6042879-6042935,6043241-6043267 asmbl_38834,asmbl_38837 scaffold_3 - intron_skips_exon 6041931-6044119 asmbl_38833 // Retained and Spliced Intron # retained_intron 5951042-5951165 (orient:-) max_ev_support = 2 # spliced_intron 5951042-5951165 (orient:-) max_ev_support = 3 scaffold_3 - intron 5951042-5951165 asmbl_38833,asmbl_38834,asmbl_38841 scaffold_3 - retained_intron 5951042-5951165 asmbl_38835,asmbl_38838 // Exon Skipping and Retention # skipped_exon 6043268-6044119 (orient:-) max_ev_support = 1 # retained_exon 6043347-6043728 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6043347-6043424,6043519-6043728 asmbl_38836 scaffold_3 - intron_skips_exon 6043268-6044119 asmbl_38834,asmbl_38837 // Retained and Spliced Intron # retained_intron 6049629-6049714 (orient:-) max_ev_support = 1 # spliced_intron 6049629-6049714 (orient:-) max_ev_support = 2 scaffold_3 - intron 6049629-6049714 asmbl_38833,asmbl_38834,asmbl_38836,asmbl_38839 scaffold_3 - retained_intron 6049629-6049714 asmbl_38837 // Retained and Spliced Intron # retained_intron 5951042-5951658 (orient:-) max_ev_support = 2 # spliced_intron 5951042-5951658 (orient:-) max_ev_support = 2 scaffold_3 - intron 5951042-5951658 asmbl_38836,asmbl_38837 scaffold_3 - retained_intron 5951042-5951658 asmbl_38838 // Retained and Spliced Intron # retained_intron 5951454-5951658 (orient:-) max_ev_support = 2 # spliced_intron 5951454-5951658 (orient:-) max_ev_support = 3 scaffold_3 - intron 5951454-5951658 asmbl_38833,asmbl_38834,asmbl_38835 scaffold_3 - retained_intron 5951454-5951658 asmbl_38838,asmbl_38841 // Retained and Spliced Intron # retained_intron 5951813-5951900 (orient:-) max_ev_support = 2 # spliced_intron 5951813-5951900 (orient:-) max_ev_support = 3 scaffold_3 - intron 5951813-5951900 asmbl_38833,asmbl_38834,asmbl_38835,asmbl_38836,asmbl_38837 scaffold_3 - retained_intron 5951813-5951900 asmbl_38838,asmbl_38841 // Exon Skipping and Retention # skipped_exon 6076986-6079075 (orient:-) max_ev_support = 2 # retained_exon 6077192-6078434 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 6077192-6077440,6077949-6078062,6078195-6078434 asmbl_38847,asmbl_38848 scaffold_3 - intron_skips_exon 6076986-6079075 asmbl_38849 // Exon Skipping and Retention # skipped_exon 6170797-6171815 (orient:-) max_ev_support = 1 # retained_exon 6170991-6171653 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6170991-6171257,6171387-6171653 asmbl_38855,asmbl_38856,asmbl_38859 scaffold_3 - intron_skips_exon 6170797-6171815 asmbl_38857,asmbl_38858 // Exon Skipping and Retention # skipped_exon 6176437-6177777 (orient:-) max_ev_support = 1 # retained_exon 6177589-6177666 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6177589-6177666 asmbl_38857 scaffold_3 - intron_skips_exon 6176437-6177777 asmbl_38856,asmbl_38859 // Retained and Spliced Intron # retained_intron 6183517-6183612 (orient:-) max_ev_support = 1 # spliced_intron 6183517-6183612 (orient:-) max_ev_support = 1 scaffold_3 - intron 6183517-6183612 asmbl_38866 scaffold_3 - retained_intron 6183517-6183612 asmbl_38864,asmbl_38865,asmbl_38867 // Exon Skipping and Retention # skipped_exon 6187507-6190087 (orient:-) max_ev_support = 2 # retained_exon 6188092-6189526 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6188092-6188133,6188666-6188710,6188803-6188859,6189016-6189042,6189135-6189212,6189317-6189526 asmbl_38865 scaffold_3 - intron_skips_exon 6187507-6190087 asmbl_38863 // Exon Skipping and Retention # skipped_exon 6189043-6190087 (orient:-) max_ev_support = 2 # retained_exon 6189135-6189526 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 6189135-6189212,6189317-6189526 asmbl_38865 scaffold_3 - intron_skips_exon 6189043-6190087 asmbl_38866 // Retained and Spliced Intron # retained_intron 6189213-6189316 (orient:-) max_ev_support = 1 # spliced_intron 6189213-6189316 (orient:-) max_ev_support = 1 scaffold_3 - intron 6189213-6189316 asmbl_38865 scaffold_3 - retained_intron 6189213-6189316 asmbl_38867 // Retained and Spliced Intron # retained_intron 6200511-6200607 (orient:-) max_ev_support = 3 # spliced_intron 6200511-6200607 (orient:-) max_ev_support = 3 scaffold_3 - intron 6200511-6200607 asmbl_38870,asmbl_38871 scaffold_3 - retained_intron 6200511-6200607 asmbl_38869 // Retained and Spliced Intron # retained_intron 6200887-6200973 (orient:-) max_ev_support = 3 # spliced_intron 6200887-6200973 (orient:-) max_ev_support = 1 scaffold_3 - intron 6200887-6200973 asmbl_38871 scaffold_3 - retained_intron 6200887-6200973 asmbl_38869,asmbl_38870 // Exon Skipping and Retention # skipped_exon 6218352-6219358 (orient:-) max_ev_support = 2 # retained_exon 6218492-6218585 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 6218492-6218585 asmbl_38874 scaffold_3 - intron_skips_exon 6218352-6219358 asmbl_38875,asmbl_38880 // Retained and Spliced Intron # retained_intron 6218352-6218491 (orient:-) max_ev_support = 2 # spliced_intron 6218352-6218491 (orient:-) max_ev_support = 2 scaffold_3 - intron 6218352-6218491 asmbl_38874 scaffold_3 - retained_intron 6218352-6218491 asmbl_38876 // Retained and Spliced Intron # retained_intron 6240997-6241570 (orient:-) max_ev_support = 2 # spliced_intron 6240997-6241570 (orient:-) max_ev_support = 2 scaffold_3 - intron 6240997-6241570 asmbl_38882,asmbl_38884,asmbl_38888,asmbl_38889,asmbl_38890 scaffold_3 - retained_intron 6240997-6241570 asmbl_38883,asmbl_38885,asmbl_38886,asmbl_38887 // Retained and Spliced Intron # retained_intron 7287291-7287439 (orient:-) max_ev_support = 3 # spliced_intron 7287291-7287439 (orient:-) max_ev_support = 2 scaffold_3 - intron 7287291-7287439 asmbl_38912,asmbl_38913,asmbl_38914 scaffold_3 - retained_intron 7287291-7287439 asmbl_38911 // Retained and Spliced Intron # retained_intron 7286007-7286114 (orient:-) max_ev_support = 2 # spliced_intron 7286007-7286114 (orient:-) max_ev_support = 2 scaffold_3 - intron 7286007-7286114 asmbl_38912 scaffold_3 - retained_intron 7286007-7286114 asmbl_38913,asmbl_38914 // Exon Skipping and Retention # skipped_exon 7408578-7410004 (orient:-) max_ev_support = 2 # retained_exon 7408924-7408953 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 7408924-7408953 asmbl_38918 scaffold_3 - intron_skips_exon 7408578-7410004 asmbl_38917 // Exon Skipping and Retention # skipped_exon 7714229-7715272 (orient:-) max_ev_support = 2 # retained_exon 7714418-7714567 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 7714418-7714567 asmbl_38927 scaffold_3 - intron_skips_exon 7714229-7715272 asmbl_38928 // Retained and Spliced Intron # retained_intron 7708801-7708889 (orient:-) max_ev_support = 1 # spliced_intron 7708801-7708889 (orient:-) max_ev_support = 2 scaffold_3 - intron 7708801-7708889 asmbl_38927,asmbl_38928,asmbl_38929,asmbl_38930,asmbl_38932,asmbl_38933 scaffold_3 - retained_intron 7708801-7708889 asmbl_38931,asmbl_38934 // Retained and Spliced Intron # retained_intron 7708984-7709075 (orient:-) max_ev_support = 1 # spliced_intron 7708984-7709075 (orient:-) max_ev_support = 2 scaffold_3 - intron 7708984-7709075 asmbl_38927,asmbl_38930,asmbl_38933 scaffold_3 - retained_intron 7708984-7709075 asmbl_38934 // Retained and Spliced Intron # retained_intron 7708984-7709096 (orient:-) max_ev_support = 1 # spliced_intron 7708984-7709096 (orient:-) max_ev_support = 1 scaffold_3 - intron 7708984-7709096 asmbl_38928,asmbl_38929,asmbl_38931,asmbl_38932 scaffold_3 - retained_intron 7708984-7709096 asmbl_38934 // Retained and Spliced Intron # retained_intron 7908386-7908760 (orient:-) max_ev_support = 2 # spliced_intron 7908386-7908760 (orient:-) max_ev_support = 2 scaffold_3 - intron 7908386-7908760 asmbl_38947 scaffold_3 - retained_intron 7908386-7908760 asmbl_38946 // Retained and Spliced Intron # retained_intron 7919332-7919535 (orient:-) max_ev_support = 1 # spliced_intron 7919332-7919535 (orient:-) max_ev_support = 2 scaffold_3 - intron 7919332-7919535 asmbl_38948,asmbl_38949,asmbl_38950,asmbl_38951,asmbl_38952 scaffold_3 - retained_intron 7919332-7919535 asmbl_38953 // Exon Skipping and Retention # skipped_exon 7956219-7956673 (orient:-) max_ev_support = 2 # retained_exon 7956311-7956397 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 7956311-7956397 asmbl_38956,asmbl_38958 scaffold_3 - intron_skips_exon 7956219-7956673 asmbl_38957,asmbl_38959 // Retained and Spliced Intron # retained_intron 8161846-8161989 (orient:-) max_ev_support = 2 # spliced_intron 8161846-8161989 (orient:-) max_ev_support = 1 scaffold_3 - intron 8161846-8161989 asmbl_38965 scaffold_3 - retained_intron 8161846-8161989 asmbl_38962 // Retained and Spliced Intron # retained_intron 8163660-8164221 (orient:-) max_ev_support = 2 # spliced_intron 8163660-8164221 (orient:-) max_ev_support = 2 scaffold_3 - intron 8163660-8164221 asmbl_38963 scaffold_3 - retained_intron 8163660-8164221 asmbl_38964 // Retained and Spliced Intron # retained_intron 8162177-8162323 (orient:-) max_ev_support = 1 # spliced_intron 8162177-8162323 (orient:-) max_ev_support = 1 scaffold_3 - intron 8162177-8162323 asmbl_38965 scaffold_3 - retained_intron 8162177-8162323 asmbl_38966 // Retained and Spliced Intron # retained_intron 8165751-8166312 (orient:-) max_ev_support = 2 # spliced_intron 8165751-8166312 (orient:-) max_ev_support = 1 scaffold_3 - intron 8165751-8166312 asmbl_38967,asmbl_38974,asmbl_38975 scaffold_3 - retained_intron 8165751-8166312 asmbl_38968 // Retained and Spliced Intron # retained_intron 8167061-8167567 (orient:-) max_ev_support = 1 # spliced_intron 8167061-8167567 (orient:-) max_ev_support = 1 scaffold_3 - intron 8167061-8167567 asmbl_38975 scaffold_3 - retained_intron 8167061-8167567 asmbl_38974 // Exon Skipping and Retention # skipped_exon 8999514-9000798 (orient:-) max_ev_support = 1 # retained_exon 8999962-9000055 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 8999962-9000055 asmbl_39001,asmbl_39005 scaffold_3 - intron_skips_exon 8999514-9000798 asmbl_39006,asmbl_39007 // Exon Skipping and Retention # skipped_exon 8995392-8998178 (orient:-) max_ev_support = 2 # retained_exon 8997704-8997790 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 8997704-8997790 asmbl_39005,asmbl_39006 scaffold_3 - intron_skips_exon 8995392-8998178 asmbl_39001,asmbl_39007 // Exon Skipping and Retention # skipped_exon 8998706-8999961 (orient:-) max_ev_support = 2 # retained_exon 8999420-8999513 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 8999420-8999513 asmbl_39006,asmbl_39007 scaffold_3 - intron_skips_exon 8998706-8999961 asmbl_39001,asmbl_39005 // Exon Skipping and Retention # skipped_exon 9843938-9845789 (orient:-) max_ev_support = 2 # retained_exon 9844427-9844973 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 9844427-9844603,9844821-9844973 asmbl_39025 scaffold_3 - intron_skips_exon 9843938-9845789 asmbl_39024 // Retained and Spliced Intron # retained_intron 10607348-10607574 (orient:-) max_ev_support = 2 # spliced_intron 10607348-10607574 (orient:-) max_ev_support = 2 scaffold_3 - intron 10607348-10607574 asmbl_39053,asmbl_39055 scaffold_3 - retained_intron 10607348-10607574 asmbl_39054 // Retained and Spliced Intron # retained_intron 10937352-10937449 (orient:-) max_ev_support = 2 # spliced_intron 10937352-10937449 (orient:-) max_ev_support = 2 scaffold_3 - intron 10937352-10937449 asmbl_39076 scaffold_3 - retained_intron 10937352-10937449 asmbl_39075,asmbl_39077 // Exon Skipping and Retention # skipped_exon 10950130-10950978 (orient:-) max_ev_support = 2 # retained_exon 10950535-10950576 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 10950535-10950576 asmbl_39079,asmbl_39082 scaffold_3 - intron_skips_exon 10950130-10950978 asmbl_39080,asmbl_39083 // Retained and Spliced Intron # retained_intron 10946294-10946668 (orient:-) max_ev_support = 1 # spliced_intron 10946294-10946668 (orient:-) max_ev_support = 2 scaffold_3 - intron 10946294-10946668 asmbl_39079,asmbl_39080 scaffold_3 - retained_intron 10946294-10946668 asmbl_39082,asmbl_39083 // Exon Skipping and Retention # skipped_exon 11608270-11609155 (orient:-) max_ev_support = 3 # retained_exon 11608608-11608730 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 11608608-11608730 asmbl_39129 scaffold_3 - intron_skips_exon 11608270-11609155 asmbl_39128 // Exon Skipping and Retention # skipped_exon 11777605-11778736 (orient:-) max_ev_support = 2 # retained_exon 11778452-11778567 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 11778452-11778567 asmbl_39144 scaffold_3 - intron_skips_exon 11777605-11778736 asmbl_39143 // Retained and Spliced Intron # retained_intron 12465871-12466558 (orient:-) max_ev_support = 2 # spliced_intron 12465871-12466558 (orient:-) max_ev_support = 3 scaffold_3 - intron 12465871-12466558 asmbl_39167 scaffold_3 - retained_intron 12465871-12466558 asmbl_39168 // Retained and Spliced Intron # retained_intron 12627468-12627566 (orient:-) max_ev_support = 2 # spliced_intron 12627468-12627566 (orient:-) max_ev_support = 2 scaffold_3 - intron 12627468-12627566 asmbl_39171 scaffold_3 - retained_intron 12627468-12627566 asmbl_39170 // Retained and Spliced Intron # retained_intron 13327018-13327170 (orient:-) max_ev_support = 2 # spliced_intron 13327018-13327170 (orient:-) max_ev_support = 2 scaffold_3 - intron 13327018-13327170 asmbl_39200,asmbl_39201 scaffold_3 - retained_intron 13327018-13327170 asmbl_39199,asmbl_39202 // Retained and Spliced Intron # retained_intron 13327306-13327386 (orient:-) max_ev_support = 2 # spliced_intron 13327306-13327386 (orient:-) max_ev_support = 2 scaffold_3 - intron 13327306-13327386 asmbl_39200,asmbl_39201,asmbl_39202 scaffold_3 - retained_intron 13327306-13327386 asmbl_39199 // Retained and Spliced Intron # retained_intron 13327483-13327589 (orient:-) max_ev_support = 1 # spliced_intron 13327483-13327589 (orient:-) max_ev_support = 2 scaffold_3 - intron 13327483-13327589 asmbl_39200 scaffold_3 - retained_intron 13327483-13327589 asmbl_39201,asmbl_39202 // Retained and Spliced Intron # retained_intron 13419144-13419405 (orient:-) max_ev_support = 3 # spliced_intron 13419144-13419405 (orient:-) max_ev_support = 1 scaffold_3 - intron 13419144-13419405 asmbl_39215,asmbl_39217 scaffold_3 - retained_intron 13419144-13419405 asmbl_39212,asmbl_39213 // Retained and Spliced Intron # retained_intron 13419144-13419481 (orient:-) max_ev_support = 3 # spliced_intron 13419144-13419481 (orient:-) max_ev_support = 1 scaffold_3 - intron 13419144-13419481 asmbl_39216 scaffold_3 - retained_intron 13419144-13419481 asmbl_39212,asmbl_39213 // Exon Skipping and Retention # skipped_exon 13422664-13424557 (orient:-) max_ev_support = 1 # retained_exon 13423808-13423923 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13423808-13423923 asmbl_39212,asmbl_39215,asmbl_39217 scaffold_3 - intron_skips_exon 13422664-13424557 asmbl_39216 // Retained and Spliced Intron # retained_intron 13423924-13424030 (orient:-) max_ev_support = 1 # spliced_intron 13423924-13424030 (orient:-) max_ev_support = 1 scaffold_3 - intron 13423924-13424030 asmbl_39212,asmbl_39217 scaffold_3 - retained_intron 13423924-13424030 asmbl_39213 // Retained and Spliced Intron # retained_intron 13423924-13424513 (orient:-) max_ev_support = 1 # spliced_intron 13423924-13424513 (orient:-) max_ev_support = 1 scaffold_3 - intron 13423924-13424513 asmbl_39215 scaffold_3 - retained_intron 13423924-13424513 asmbl_39213 // Exon Skipping and Retention # skipped_exon 13424800-13425865 (orient:-) max_ev_support = 1 # retained_exon 13425154-13425197 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13425154-13425197 asmbl_39217 scaffold_3 - intron_skips_exon 13424800-13425865 asmbl_39212,asmbl_39213,asmbl_39215,asmbl_39216 // Exon Skipping and Retention # skipped_exon 13647877-13648874 (orient:-) max_ev_support = 3 # retained_exon 13648702-13648766 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 13648702-13648766 asmbl_39226 scaffold_3 - intron_skips_exon 13647877-13648874 asmbl_39225 // Retained and Spliced Intron # retained_intron 13647877-13648701 (orient:-) max_ev_support = 3 # spliced_intron 13647877-13648701 (orient:-) max_ev_support = 3 scaffold_3 - intron 13647877-13648701 asmbl_39226 scaffold_3 - retained_intron 13647877-13648701 asmbl_39227 // Retained and Spliced Intron # retained_intron 13647877-13648874 (orient:-) max_ev_support = 3 # spliced_intron 13647877-13648874 (orient:-) max_ev_support = 3 scaffold_3 - intron 13647877-13648874 asmbl_39225 scaffold_3 - retained_intron 13647877-13648874 asmbl_39227 // Retained and Spliced Intron # retained_intron 13648767-13648874 (orient:-) max_ev_support = 3 # spliced_intron 13648767-13648874 (orient:-) max_ev_support = 3 scaffold_3 - intron 13648767-13648874 asmbl_39226 scaffold_3 - retained_intron 13648767-13648874 asmbl_39227 // Exon Skipping and Retention # skipped_exon 13664353-13664809 (orient:-) max_ev_support = 1 # retained_exon 13664588-13664678 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 13664588-13664678 asmbl_39231 scaffold_3 - intron_skips_exon 13664353-13664809 asmbl_39230 // Exon Skipping and Retention # skipped_exon 13724899-13726970 (orient:-) max_ev_support = 2 # retained_exon 13725221-13725754 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 13725221-13725499,13725659-13725754 asmbl_39242,asmbl_39244,asmbl_39245 scaffold_3 - intron_skips_exon 13724899-13726970 asmbl_39243 // Retained and Spliced Intron # retained_intron 13801022-13801246 (orient:-) max_ev_support = 2 # spliced_intron 13801022-13801246 (orient:-) max_ev_support = 2 scaffold_3 - intron 13801022-13801246 asmbl_39252 scaffold_3 - retained_intron 13801022-13801246 asmbl_39253,asmbl_39254,asmbl_39255 // Retained and Spliced Intron # retained_intron 13800170-13800928 (orient:-) max_ev_support = 2 # spliced_intron 13800170-13800928 (orient:-) max_ev_support = 2 scaffold_3 - intron 13800170-13800928 asmbl_39252,asmbl_39253,asmbl_39255 scaffold_3 - retained_intron 13800170-13800928 asmbl_39254 // Exon Skipping and Retention # skipped_exon 13958707-13958998 (orient:-) max_ev_support = 3 # retained_exon 13958772-13958806 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 13958772-13958806 asmbl_39264 scaffold_3 - intron_skips_exon 13958707-13958998 asmbl_39263 // Exon Skipping and Retention # skipped_exon 13986406-13987046 (orient:-) max_ev_support = 2 # retained_exon 13986481-13986906 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 13986481-13986627,13986838-13986906 asmbl_39268 scaffold_3 - intron_skips_exon 13986406-13987046 asmbl_39267 // Retained and Spliced Intron # retained_intron 14177620-14177901 (orient:-) max_ev_support = 2 # spliced_intron 14177620-14177901 (orient:-) max_ev_support = 2 scaffold_3 - intron 14177620-14177901 asmbl_39273 scaffold_3 - retained_intron 14177620-14177901 asmbl_39274 // Retained and Spliced Intron # retained_intron 14183210-14183724 (orient:-) max_ev_support = 3 # spliced_intron 14183210-14183724 (orient:-) max_ev_support = 3 scaffold_3 - intron 14183210-14183724 asmbl_39277,asmbl_39280,asmbl_39281 scaffold_3 - retained_intron 14183210-14183724 asmbl_39278,asmbl_39279,asmbl_39282 // Retained and Spliced Intron # retained_intron 14186470-14186940 (orient:-) max_ev_support = 3 # spliced_intron 14186470-14186940 (orient:-) max_ev_support = 3 scaffold_3 - intron 14186470-14186940 asmbl_39277,asmbl_39280,asmbl_39281,asmbl_39282 scaffold_3 - retained_intron 14186470-14186940 asmbl_39279 // Retained and Spliced Intron # retained_intron 14187141-14189176 (orient:-) max_ev_support = 3 # spliced_intron 14187141-14189176 (orient:-) max_ev_support = 1 scaffold_3 - intron 14187141-14189176 asmbl_39277 scaffold_3 - retained_intron 14187141-14189176 asmbl_39279,asmbl_39280,asmbl_39282 // Retained and Spliced Intron # retained_intron 14187141-14189188 (orient:-) max_ev_support = 3 # spliced_intron 14187141-14189188 (orient:-) max_ev_support = 2 scaffold_3 - intron 14187141-14189188 asmbl_39281 scaffold_3 - retained_intron 14187141-14189188 asmbl_39279,asmbl_39280,asmbl_39282 // Retained and Spliced Intron # retained_intron 14186116-14186271 (orient:-) max_ev_support = 2 # spliced_intron 14186116-14186271 (orient:-) max_ev_support = 3 scaffold_3 - intron 14186116-14186271 asmbl_39277,asmbl_39279,asmbl_39280 scaffold_3 - retained_intron 14186116-14186271 asmbl_39281,asmbl_39282 // Retained and Spliced Intron # retained_intron 14319899-14319995 (orient:-) max_ev_support = 2 # spliced_intron 14319899-14319995 (orient:-) max_ev_support = 3 scaffold_3 - intron 14319899-14319995 asmbl_39302 scaffold_3 - retained_intron 14319899-14319995 asmbl_39303,asmbl_39304 // Retained and Spliced Intron # retained_intron 14317546-14317663 (orient:-) max_ev_support = 1 # spliced_intron 14317546-14317663 (orient:-) max_ev_support = 2 scaffold_3 - intron 14317546-14317663 asmbl_39302,asmbl_39303,asmbl_39306 scaffold_3 - retained_intron 14317546-14317663 asmbl_39305 // Retained and Spliced Intron # retained_intron 14334025-14334182 (orient:-) max_ev_support = 3 # spliced_intron 14334025-14334182 (orient:-) max_ev_support = 3 scaffold_3 - intron 14334025-14334182 asmbl_39309,asmbl_39310 scaffold_3 - retained_intron 14334025-14334182 asmbl_39311 // Retained and Spliced Intron # retained_intron 14433082-14433258 (orient:-) max_ev_support = 3 # spliced_intron 14433082-14433258 (orient:-) max_ev_support = 3 scaffold_3 - intron 14433082-14433258 asmbl_39318,asmbl_39322 scaffold_3 - retained_intron 14433082-14433258 asmbl_39319,asmbl_39321 // Retained and Spliced Intron # retained_intron 14495657-14495730 (orient:-) max_ev_support = 1 # spliced_intron 14495657-14495730 (orient:-) max_ev_support = 1 scaffold_3 - intron 14495657-14495730 asmbl_39327 scaffold_3 - retained_intron 14495657-14495730 asmbl_39326 // Exon Skipping and Retention # skipped_exon 14495186-14495730 (orient:-) max_ev_support = 2 # retained_exon 14495454-14495656 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14495454-14495656 asmbl_39327 scaffold_3 - intron_skips_exon 14495186-14495730 asmbl_39330,asmbl_39331 // Exon Skipping and Retention # skipped_exon 14513575-14514227 (orient:-) max_ev_support = 1 # retained_exon 14514078-14514131 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 14514078-14514131 asmbl_39332 scaffold_3 - intron_skips_exon 14513575-14514227 asmbl_39334 // Exon Skipping and Retention # skipped_exon 14513809-14514499 (orient:-) max_ev_support = 1 # retained_exon 14514078-14514365 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 14514078-14514131,14514228-14514365 asmbl_39332 scaffold_3 - intron_skips_exon 14513809-14514499 asmbl_39333 // Exon Skipping and Retention # skipped_exon 14512784-14514077 (orient:-) max_ev_support = 3 # retained_exon 14513521-14513808 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14513521-14513574,14513671-14513808 asmbl_39333 scaffold_3 - intron_skips_exon 14512784-14514077 asmbl_39332 // Retained and Spliced Intron # retained_intron 14519600-14519705 (orient:-) max_ev_support = 2 # spliced_intron 14519600-14519705 (orient:-) max_ev_support = 2 scaffold_3 - intron 14519600-14519705 asmbl_39336 scaffold_3 - retained_intron 14519600-14519705 asmbl_39337 // Retained and Spliced Intron # retained_intron 14519626-14519705 (orient:-) max_ev_support = 2 # spliced_intron 14519626-14519705 (orient:-) max_ev_support = 3 scaffold_3 - intron 14519626-14519705 asmbl_39335,asmbl_39338 scaffold_3 - retained_intron 14519626-14519705 asmbl_39337 // Exon Skipping and Retention # skipped_exon 14530559-14532845 (orient:-) max_ev_support = 2 # retained_exon 14531538-14531594 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14531538-14531594 asmbl_39341 scaffold_3 - intron_skips_exon 14530559-14532845 asmbl_39340 // Retained and Spliced Intron # retained_intron 14559144-14559490 (orient:-) max_ev_support = 3 # spliced_intron 14559144-14559490 (orient:-) max_ev_support = 3 scaffold_3 - intron 14559144-14559490 asmbl_39344 scaffold_3 - retained_intron 14559144-14559490 asmbl_39343 // Exon Skipping and Retention # skipped_exon 14576071-14578468 (orient:-) max_ev_support = 2 # retained_exon 14576165-14576217 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14576165-14576217 asmbl_39346 scaffold_3 - intron_skips_exon 14576071-14578468 asmbl_39345 // Exon Skipping and Retention # skipped_exon 14571129-14573597 (orient:-) max_ev_support = 2 # retained_exon 14573434-14573502 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14573434-14573502 asmbl_39347 scaffold_3 - intron_skips_exon 14571129-14573597 asmbl_39345,asmbl_39346,asmbl_39349 // Retained and Spliced Intron # retained_intron 14587006-14587312 (orient:-) max_ev_support = 2 # spliced_intron 14587006-14587312 (orient:-) max_ev_support = 2 scaffold_3 - intron 14587006-14587312 asmbl_39352 scaffold_3 - retained_intron 14587006-14587312 asmbl_39351 // Retained and Spliced Intron # retained_intron 14763888-14764213 (orient:-) max_ev_support = 3 # spliced_intron 14763888-14764213 (orient:-) max_ev_support = 2 scaffold_3 - intron 14763888-14764213 asmbl_39364,asmbl_39365,asmbl_39367 scaffold_3 - retained_intron 14763888-14764213 asmbl_39362,asmbl_39366 // Retained and Spliced Intron # retained_intron 14774473-14774932 (orient:-) max_ev_support = 2 # spliced_intron 14774473-14774932 (orient:-) max_ev_support = 2 scaffold_3 - intron 14774473-14774932 asmbl_39371 scaffold_3 - retained_intron 14774473-14774932 asmbl_39369 // Exon Skipping and Retention # skipped_exon 14777542-14779842 (orient:-) max_ev_support = 1 # retained_exon 14778497-14778710 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 14778497-14778710 asmbl_39369,asmbl_39371,asmbl_39372,asmbl_39373 scaffold_3 - intron_skips_exon 14777542-14779842 asmbl_39375 // Exon Skipping and Retention # skipped_exon 14774411-14775606 (orient:-) max_ev_support = 1 # retained_exon 14774933-14775076 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 14774933-14775076 asmbl_39371 scaffold_3 - intron_skips_exon 14774411-14775606 asmbl_39372 // Exon Skipping and Retention # skipped_exon 14807270-14807933 (orient:-) max_ev_support = 2 # retained_exon 14807664-14807675 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 14807664-14807675 asmbl_39378 scaffold_3 - intron_skips_exon 14807270-14807933 asmbl_39377 // Retained and Spliced Intron # retained_intron 15741539-15741648 (orient:-) max_ev_support = 1 # spliced_intron 15741539-15741648 (orient:-) max_ev_support = 2 scaffold_3 - intron 15741539-15741648 asmbl_39387,asmbl_39389 scaffold_3 - retained_intron 15741539-15741648 asmbl_39388,asmbl_39390 // Retained and Spliced Intron # retained_intron 15781656-15781744 (orient:-) max_ev_support = 1 # spliced_intron 15781656-15781744 (orient:-) max_ev_support = 2 scaffold_3 - intron 15781656-15781744 asmbl_39397,asmbl_39399 scaffold_3 - retained_intron 15781656-15781744 asmbl_39400 // Retained and Spliced Intron # retained_intron 16006545-16006633 (orient:-) max_ev_support = 2 # spliced_intron 16006545-16006633 (orient:-) max_ev_support = 2 scaffold_3 - intron 16006545-16006633 asmbl_39417 scaffold_3 - retained_intron 16006545-16006633 asmbl_39419 // Exon Skipping and Retention # skipped_exon 16076915-16079016 (orient:-) max_ev_support = 1 # retained_exon 16077959-16078006 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16077959-16078006 asmbl_39423,asmbl_39424 scaffold_3 - intron_skips_exon 16076915-16079016 asmbl_39425 // Exon Skipping and Retention # skipped_exon 16076915-16078214 (orient:-) max_ev_support = 1 # retained_exon 16077959-16078006 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16077959-16078006 asmbl_39423,asmbl_39424 scaffold_3 - intron_skips_exon 16076915-16078214 asmbl_39426 // Exon Skipping and Retention # skipped_exon 16078007-16079016 (orient:-) max_ev_support = 2 # retained_exon 16078215-16078232 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 16078215-16078232 asmbl_39424,asmbl_39426 scaffold_3 - intron_skips_exon 16078007-16079016 asmbl_39423 // Retained and Spliced Intron # retained_intron 16346254-16346337 (orient:-) max_ev_support = 2 # spliced_intron 16346254-16346337 (orient:-) max_ev_support = 2 scaffold_3 - intron 16346254-16346337 asmbl_39445 scaffold_3 - retained_intron 16346254-16346337 asmbl_39446 // Exon Skipping and Retention # skipped_exon 16797210-16800128 (orient:-) max_ev_support = 2 # retained_exon 16799187-16799398 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 16799187-16799398 asmbl_39464 scaffold_3 - intron_skips_exon 16797210-16800128 asmbl_39463 // Exon Skipping and Retention # skipped_exon 17083146-17084104 (orient:-) max_ev_support = 1 # retained_exon 17083237-17083321 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 17083237-17083321 asmbl_39483 scaffold_3 - intron_skips_exon 17083146-17084104 asmbl_39482 // Retained and Spliced Intron # retained_intron 17094055-17094262 (orient:-) max_ev_support = 2 # spliced_intron 17094055-17094262 (orient:-) max_ev_support = 2 scaffold_3 - intron 17094055-17094262 asmbl_39485 scaffold_3 - retained_intron 17094055-17094262 asmbl_39484 // Retained and Spliced Intron # retained_intron 17094412-17095225 (orient:-) max_ev_support = 4 # spliced_intron 17094412-17095225 (orient:-) max_ev_support = 2 scaffold_3 - intron 17094412-17095225 asmbl_39485 scaffold_3 - retained_intron 17094412-17095225 asmbl_39484 // Retained and Spliced Intron # retained_intron 17338585-17338883 (orient:-) max_ev_support = 3 # spliced_intron 17338585-17338883 (orient:-) max_ev_support = 2 scaffold_3 - intron 17338585-17338883 asmbl_39488 scaffold_3 - retained_intron 17338585-17338883 asmbl_39487 // Retained and Spliced Intron # retained_intron 17361952-17362032 (orient:-) max_ev_support = 3 # spliced_intron 17361952-17362032 (orient:-) max_ev_support = 1 scaffold_3 - intron 17361952-17362032 asmbl_39494,asmbl_39495,asmbl_39496,asmbl_39497,asmbl_39498,asmbl_39499,asmbl_39500,asmbl_39502,asmbl_39503,asmbl_39504 scaffold_3 - retained_intron 17361952-17362032 asmbl_39493,asmbl_39501 // Retained and Spliced Intron # retained_intron 17362094-17362259 (orient:-) max_ev_support = 3 # spliced_intron 17362094-17362259 (orient:-) max_ev_support = 1 scaffold_3 - intron 17362094-17362259 asmbl_39500 scaffold_3 - retained_intron 17362094-17362259 asmbl_39493,asmbl_39495,asmbl_39496,asmbl_39498,asmbl_39499,asmbl_39502,asmbl_39503 // Retained and Spliced Intron # retained_intron 17362106-17362259 (orient:-) max_ev_support = 3 # spliced_intron 17362106-17362259 (orient:-) max_ev_support = 1 scaffold_3 - intron 17362106-17362259 asmbl_39494,asmbl_39497,asmbl_39501,asmbl_39504 scaffold_3 - retained_intron 17362106-17362259 asmbl_39493,asmbl_39495,asmbl_39496,asmbl_39498,asmbl_39499,asmbl_39502,asmbl_39503 // Retained and Spliced Intron # retained_intron 17364750-17364900 (orient:-) max_ev_support = 1 # spliced_intron 17364750-17364900 (orient:-) max_ev_support = 1 scaffold_3 - intron 17364750-17364900 asmbl_39496,asmbl_39503 scaffold_3 - retained_intron 17364750-17364900 asmbl_39494,asmbl_39498 // Retained and Spliced Intron # retained_intron 17364750-17365193 (orient:-) max_ev_support = 1 # spliced_intron 17364750-17365193 (orient:-) max_ev_support = 1 scaffold_3 - intron 17364750-17365193 asmbl_39495,asmbl_39500,asmbl_39504,asmbl_39505 scaffold_3 - retained_intron 17364750-17365193 asmbl_39494,asmbl_39498 // Retained and Spliced Intron # retained_intron 17364766-17365193 (orient:-) max_ev_support = 1 # spliced_intron 17364766-17365193 (orient:-) max_ev_support = 1 scaffold_3 - intron 17364766-17365193 asmbl_39497,asmbl_39501,asmbl_39502 scaffold_3 - retained_intron 17364766-17365193 asmbl_39494,asmbl_39498 // Exon Skipping and Retention # skipped_exon 17366201-17366613 (orient:-) max_ev_support = 1 # retained_exon 17366415-17366491 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 17366415-17366491 asmbl_39494,asmbl_39496,asmbl_39498,asmbl_39500,asmbl_39504 scaffold_3 - intron_skips_exon 17366201-17366613 asmbl_39495,asmbl_39502,asmbl_39503 // Exon Skipping and Retention # skipped_exon 17536205-17536591 (orient:-) max_ev_support = 2 # retained_exon 17536305-17536373 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 17536305-17536373 asmbl_39516,asmbl_39517,asmbl_39519 scaffold_3 - intron_skips_exon 17536205-17536591 asmbl_39518,asmbl_39520 // Retained and Spliced Intron # retained_intron 17535333-17535434 (orient:-) max_ev_support = 2 # spliced_intron 17535333-17535434 (orient:-) max_ev_support = 2 scaffold_3 - intron 17535333-17535434 asmbl_39516,asmbl_39518,asmbl_39519 scaffold_3 - retained_intron 17535333-17535434 asmbl_39517,asmbl_39520 // Retained and Spliced Intron # retained_intron 17849572-17849654 (orient:-) max_ev_support = 2 # spliced_intron 17849572-17849654 (orient:-) max_ev_support = 1 scaffold_3 - intron 17849572-17849654 asmbl_39525 scaffold_3 - retained_intron 17849572-17849654 asmbl_39524 // Exon Skipping and Retention # skipped_exon 18154089-18156320 (orient:-) max_ev_support = 2 # retained_exon 18154875-18154934 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18154875-18154934 asmbl_39542 scaffold_3 - intron_skips_exon 18154089-18156320 asmbl_39543 // Exon Skipping and Retention # skipped_exon 18154089-18156850 (orient:-) max_ev_support = 1 # retained_exon 18154875-18156395 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18154875-18154934,18156321-18156395 asmbl_39542 scaffold_3 - intron_skips_exon 18154089-18156850 asmbl_39544,asmbl_39545 // Retained and Spliced Intron # retained_intron 18345996-18346126 (orient:-) max_ev_support = 1 # spliced_intron 18345996-18346126 (orient:-) max_ev_support = 2 scaffold_3 - intron 18345996-18346126 asmbl_39560 scaffold_3 - retained_intron 18345996-18346126 asmbl_39561 // Retained and Spliced Intron # retained_intron 18346320-18346422 (orient:-) max_ev_support = 1 # spliced_intron 18346320-18346422 (orient:-) max_ev_support = 2 scaffold_3 - intron 18346320-18346422 asmbl_39560 scaffold_3 - retained_intron 18346320-18346422 asmbl_39561 // Retained and Spliced Intron # retained_intron 18346561-18346729 (orient:-) max_ev_support = 1 # spliced_intron 18346561-18346729 (orient:-) max_ev_support = 2 scaffold_3 - intron 18346561-18346729 asmbl_39560 scaffold_3 - retained_intron 18346561-18346729 asmbl_39561 // Retained and Spliced Intron # retained_intron 18346773-18346852 (orient:-) max_ev_support = 1 # spliced_intron 18346773-18346852 (orient:-) max_ev_support = 2 scaffold_3 - intron 18346773-18346852 asmbl_39560 scaffold_3 - retained_intron 18346773-18346852 asmbl_39561 // Retained and Spliced Intron # retained_intron 18346916-18347034 (orient:-) max_ev_support = 1 # spliced_intron 18346916-18347034 (orient:-) max_ev_support = 2 scaffold_3 - intron 18346916-18347034 asmbl_39560 scaffold_3 - retained_intron 18346916-18347034 asmbl_39561 // Retained and Spliced Intron # retained_intron 18347139-18347225 (orient:-) max_ev_support = 1 # spliced_intron 18347139-18347225 (orient:-) max_ev_support = 2 scaffold_3 - intron 18347139-18347225 asmbl_39560 scaffold_3 - retained_intron 18347139-18347225 asmbl_39561 // Retained and Spliced Intron # retained_intron 18347334-18347419 (orient:-) max_ev_support = 1 # spliced_intron 18347334-18347419 (orient:-) max_ev_support = 2 scaffold_3 - intron 18347334-18347419 asmbl_39560 scaffold_3 - retained_intron 18347334-18347419 asmbl_39561 // Retained and Spliced Intron # retained_intron 18347595-18347705 (orient:-) max_ev_support = 1 # spliced_intron 18347595-18347705 (orient:-) max_ev_support = 2 scaffold_3 - intron 18347595-18347705 asmbl_39560 scaffold_3 - retained_intron 18347595-18347705 asmbl_39561 // Retained and Spliced Intron # retained_intron 18372532-18372629 (orient:-) max_ev_support = 1 # spliced_intron 18372532-18372629 (orient:-) max_ev_support = 1 scaffold_3 - intron 18372532-18372629 asmbl_39566 scaffold_3 - retained_intron 18372532-18372629 asmbl_39567 // Retained and Spliced Intron # retained_intron 18372738-18372846 (orient:-) max_ev_support = 1 # spliced_intron 18372738-18372846 (orient:-) max_ev_support = 1 scaffold_3 - intron 18372738-18372846 asmbl_39566 scaffold_3 - retained_intron 18372738-18372846 asmbl_39567 // Exon Skipping and Retention # skipped_exon 18376861-18377450 (orient:-) max_ev_support = 1 # retained_exon 18376956-18377274 (orient:-) max_ev_support = 2 scaffold_3 - retained_exons 18376956-18377018,18377179-18377274 asmbl_39568 scaffold_3 - intron_skips_exon 18376861-18377450 asmbl_39569 // Exon Skipping and Retention # skipped_exon 18494690-18496221 (orient:-) max_ev_support = 2 # retained_exon 18495876-18495899 (orient:-) max_ev_support = 1 scaffold_3 - retained_exons 18495876-18495899 asmbl_39575 scaffold_3 - intron_skips_exon 18494690-18496221 asmbl_39574 // Retained and Spliced Intron # retained_intron 19029164-19029934 (orient:-) max_ev_support = 1 # spliced_intron 19029164-19029934 (orient:-) max_ev_support = 1 scaffold_3 - intron 19029164-19029934 asmbl_39585 scaffold_3 - retained_intron 19029164-19029934 asmbl_39584 // Retained and Spliced Intron # retained_intron 19407196-19407399 (orient:-) max_ev_support = 1 # spliced_intron 19407196-19407399 (orient:-) max_ev_support = 1 scaffold_3 - intron 19407196-19407399 asmbl_39595,asmbl_39597 scaffold_3 - retained_intron 19407196-19407399 asmbl_39598 // Retained and Spliced Intron # retained_intron 19407196-19407473 (orient:-) max_ev_support = 1 # spliced_intron 19407196-19407473 (orient:-) max_ev_support = 2 scaffold_3 - intron 19407196-19407473 asmbl_39594,asmbl_39596 scaffold_3 - retained_intron 19407196-19407473 asmbl_39598 // Retained and Spliced Intron # retained_intron 19821324-19822204 (orient:-) max_ev_support = 5 # spliced_intron 19821324-19822204 (orient:-) max_ev_support = 1 scaffold_3 - intron 19821324-19822204 asmbl_39607 scaffold_3 - retained_intron 19821324-19822204 asmbl_39604,asmbl_39605,asmbl_39606 // Retained and Spliced Intron # retained_intron 19885475-19886383 (orient:-) max_ev_support = 7 # spliced_intron 19885475-19886383 (orient:-) max_ev_support = 3 scaffold_3 - intron 19885475-19886383 asmbl_39616,asmbl_39619 scaffold_3 - retained_intron 19885475-19886383 asmbl_39614 // Retained and Spliced Intron # retained_intron 19885475-19886465 (orient:-) max_ev_support = 7 # spliced_intron 19885475-19886465 (orient:-) max_ev_support = 1 scaffold_3 - intron 19885475-19886465 asmbl_39618 scaffold_3 - retained_intron 19885475-19886465 asmbl_39614 // Exon Skipping and Retention # skipped_exon 19884864-19885401 (orient:-) max_ev_support = 3 # retained_exon 19885176-19885238 (orient:-) max_ev_support = 3 scaffold_3 - retained_exons 19885176-19885238 asmbl_39615,asmbl_39616 scaffold_3 - intron_skips_exon 19884864-19885401 asmbl_39614,asmbl_39619 // Retained and Spliced Intron # retained_intron 19884864-19885175 (orient:-) max_ev_support = 2 # spliced_intron 19884864-19885175 (orient:-) max_ev_support = 3 scaffold_3 - intron 19884864-19885175 asmbl_39615,asmbl_39616 scaffold_3 - retained_intron 19884864-19885175 asmbl_39617,asmbl_39618 // Retained and Spliced Intron # retained_intron 19884864-19885401 (orient:-) max_ev_support = 2 # spliced_intron 19884864-19885401 (orient:-) max_ev_support = 3 scaffold_3 - intron 19884864-19885401 asmbl_39614,asmbl_39619 scaffold_3 - retained_intron 19884864-19885401 asmbl_39617,asmbl_39618 // Retained and Spliced Intron # retained_intron 19885239-19885401 (orient:-) max_ev_support = 2 # spliced_intron 19885239-19885401 (orient:-) max_ev_support = 3 scaffold_3 - intron 19885239-19885401 asmbl_39615,asmbl_39616 scaffold_3 - retained_intron 19885239-19885401 asmbl_39617,asmbl_39618 // Retained and Spliced Intron # retained_intron 19882464-19882567 (orient:-) max_ev_support = 1 # spliced_intron 19882464-19882567 (orient:-) max_ev_support = 1 scaffold_3 - intron 19882464-19882567 asmbl_39621 scaffold_3 - retained_intron 19882464-19882567 asmbl_39620 // Retained and Spliced Intron # retained_intron 19887827-19887892 (orient:-) max_ev_support = 3 # spliced_intron 19887827-19887892 (orient:-) max_ev_support = 1 scaffold_3 - intron 19887827-19887892 asmbl_39623 scaffold_3 - retained_intron 19887827-19887892 asmbl_39622 // Retained and Spliced Intron # retained_intron 192086-192185 (orient:+) max_ev_support = 3 # spliced_intron 192086-192185 (orient:+) max_ev_support = 1 scaffold_3 + intron 192086-192185 asmbl_39765 scaffold_3 + retained_intron 192086-192185 asmbl_39764 // Retained and Spliced Intron # retained_intron 795219-795435 (orient:+) max_ev_support = 3 # spliced_intron 795219-795435 (orient:+) max_ev_support = 2 scaffold_3 + intron 795219-795435 asmbl_39769 scaffold_3 + retained_intron 795219-795435 asmbl_39768,asmbl_39770 // Retained and Spliced Intron # retained_intron 1089470-1089642 (orient:+) max_ev_support = 2 # spliced_intron 1089470-1089642 (orient:+) max_ev_support = 1 scaffold_3 + intron 1089470-1089642 asmbl_39786,asmbl_39787 scaffold_3 + retained_intron 1089470-1089642 asmbl_39785 // Retained and Spliced Intron # retained_intron 1089700-1089735 (orient:+) max_ev_support = 1 # spliced_intron 1089700-1089735 (orient:+) max_ev_support = 2 scaffold_3 + intron 1089700-1089735 asmbl_39785,asmbl_39786 scaffold_3 + retained_intron 1089700-1089735 asmbl_39787 // Exon Skipping and Retention # skipped_exon 1757943-1758479 (orient:+) max_ev_support = 1 # retained_exon 1758041-1758082 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 1758041-1758082 asmbl_39824,asmbl_39826,asmbl_39827,asmbl_39828 scaffold_3 + intron_skips_exon 1757943-1758479 asmbl_39829 // Exon Skipping and Retention # skipped_exon 1763337-1764538 (orient:+) max_ev_support = 2 # retained_exon 1763823-1763894 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 1763823-1763894 asmbl_39824,asmbl_39826,asmbl_39827,asmbl_39828,asmbl_39830,asmbl_39831 scaffold_3 + intron_skips_exon 1763337-1764538 asmbl_39825 // Retained and Spliced Intron # retained_intron 1765661-1765894 (orient:+) max_ev_support = 2 # spliced_intron 1765661-1765894 (orient:+) max_ev_support = 1 scaffold_3 + intron 1765661-1765894 asmbl_39834 scaffold_3 + retained_intron 1765661-1765894 asmbl_39832 // Retained and Spliced Intron # retained_intron 1767415-1767435 (orient:+) max_ev_support = 1 # spliced_intron 1767415-1767435 (orient:+) max_ev_support = 1 scaffold_3 + intron 1767415-1767435 asmbl_39834 scaffold_3 + retained_intron 1767415-1767435 asmbl_39833,asmbl_39835 // Retained and Spliced Intron # retained_intron 1767415-1767456 (orient:+) max_ev_support = 1 # spliced_intron 1767415-1767456 (orient:+) max_ev_support = 1 scaffold_3 + intron 1767415-1767456 asmbl_39836 scaffold_3 + retained_intron 1767415-1767456 asmbl_39833,asmbl_39835 // Exon Skipping and Retention # skipped_exon 1765209-1766311 (orient:+) max_ev_support = 1 # retained_exon 1765568-1765987 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 1765568-1765660,1765895-1765987 asmbl_39834 scaffold_3 + intron_skips_exon 1765209-1766311 asmbl_39833 // Retained and Spliced Intron # retained_intron 1841145-1841393 (orient:+) max_ev_support = 3 # spliced_intron 1841145-1841393 (orient:+) max_ev_support = 2 scaffold_3 + intron 1841145-1841393 asmbl_39846 scaffold_3 + retained_intron 1841145-1841393 asmbl_39845 // Exon Skipping and Retention # skipped_exon 1839647-1840955 (orient:+) max_ev_support = 1 # retained_exon 1840093-1840248 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 1840093-1840248 asmbl_39846 scaffold_3 + intron_skips_exon 1839647-1840955 asmbl_39845 // Retained and Spliced Intron # retained_intron 2264175-2264205 (orient:+) max_ev_support = 2 # spliced_intron 2264175-2264205 (orient:+) max_ev_support = 1 scaffold_3 + intron 2264175-2264205 asmbl_39858 scaffold_3 + retained_intron 2264175-2264205 asmbl_39857 // Retained and Spliced Intron # retained_intron 2269178-2269345 (orient:+) max_ev_support = 2 # spliced_intron 2269178-2269345 (orient:+) max_ev_support = 2 scaffold_3 + intron 2269178-2269345 asmbl_39860 scaffold_3 + retained_intron 2269178-2269345 asmbl_39859 // Exon Skipping and Retention # skipped_exon 2667897-2668742 (orient:+) max_ev_support = 1 # retained_exon 2668199-2668225 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 2668199-2668225 asmbl_39866,asmbl_39869 scaffold_3 + intron_skips_exon 2667897-2668742 asmbl_39867,asmbl_39868 // Exon Skipping and Retention # skipped_exon 2951793-2952785 (orient:+) max_ev_support = 1 # retained_exon 2951964-2952335 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 2951964-2952071,2952282-2952335 asmbl_39882 scaffold_3 + intron_skips_exon 2951793-2952785 asmbl_39883 // Retained and Spliced Intron # retained_intron 3062725-3062797 (orient:+) max_ev_support = 3 # spliced_intron 3062725-3062797 (orient:+) max_ev_support = 3 scaffold_3 + intron 3062725-3062797 asmbl_39888 scaffold_3 + retained_intron 3062725-3062797 asmbl_39887 // Retained and Spliced Intron # retained_intron 3262598-3263507 (orient:+) max_ev_support = 4 # spliced_intron 3262598-3263507 (orient:+) max_ev_support = 1 scaffold_3 + intron 3262598-3263507 asmbl_39899 scaffold_3 + retained_intron 3262598-3263507 asmbl_39893,asmbl_39897 // Retained and Spliced Intron # retained_intron 3263784-3264657 (orient:+) max_ev_support = 3 # spliced_intron 3263784-3264657 (orient:+) max_ev_support = 1 scaffold_3 + intron 3263784-3264657 asmbl_39899 scaffold_3 + retained_intron 3263784-3264657 asmbl_39893,asmbl_39897 // Retained and Spliced Intron # retained_intron 3258676-3259114 (orient:+) max_ev_support = 1 # spliced_intron 3258676-3259114 (orient:+) max_ev_support = 1 scaffold_3 + intron 3258676-3259114 asmbl_39905,asmbl_39906 scaffold_3 + retained_intron 3258676-3259114 asmbl_39904 // Retained and Spliced Intron # retained_intron 3258676-3259547 (orient:+) max_ev_support = 1 # spliced_intron 3258676-3259547 (orient:+) max_ev_support = 1 scaffold_3 + intron 3258676-3259547 asmbl_39897,asmbl_39899 scaffold_3 + retained_intron 3258676-3259547 asmbl_39904 // Retained and Spliced Intron # retained_intron 3261824-3262038 (orient:+) max_ev_support = 1 # spliced_intron 3261824-3262038 (orient:+) max_ev_support = 1 scaffold_3 + intron 3261824-3262038 asmbl_39897,asmbl_39899,asmbl_39904,asmbl_39906 scaffold_3 + retained_intron 3261824-3262038 asmbl_39905 // Exon Skipping and Retention # skipped_exon 3734522-3736476 (orient:+) max_ev_support = 2 # retained_exon 3735950-3736073 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 3735950-3736073 asmbl_39928 scaffold_3 + intron_skips_exon 3734522-3736476 asmbl_39927 // Retained and Spliced Intron # retained_intron 3890125-3890210 (orient:+) max_ev_support = 1 # spliced_intron 3890125-3890210 (orient:+) max_ev_support = 3 scaffold_3 + intron 3890125-3890210 asmbl_39939 scaffold_3 + retained_intron 3890125-3890210 asmbl_39940 // Retained and Spliced Intron # retained_intron 4257051-4257133 (orient:+) max_ev_support = 2 # spliced_intron 4257051-4257133 (orient:+) max_ev_support = 1 scaffold_3 + intron 4257051-4257133 asmbl_39945 scaffold_3 + retained_intron 4257051-4257133 asmbl_39944 // Retained and Spliced Intron # retained_intron 4275917-4276088 (orient:+) max_ev_support = 2 # spliced_intron 4275917-4276088 (orient:+) max_ev_support = 2 scaffold_3 + intron 4275917-4276088 asmbl_39951 scaffold_3 + retained_intron 4275917-4276088 asmbl_39950 // Retained and Spliced Intron # retained_intron 4282352-4282433 (orient:+) max_ev_support = 1 # spliced_intron 4282352-4282433 (orient:+) max_ev_support = 1 scaffold_3 + intron 4282352-4282433 asmbl_39954 scaffold_3 + retained_intron 4282352-4282433 asmbl_39953 // Retained and Spliced Intron # retained_intron 4282597-4282658 (orient:+) max_ev_support = 1 # spliced_intron 4282597-4282658 (orient:+) max_ev_support = 1 scaffold_3 + intron 4282597-4282658 asmbl_39954 scaffold_3 + retained_intron 4282597-4282658 asmbl_39953 // Retained and Spliced Intron # retained_intron 4304074-4304185 (orient:+) max_ev_support = 1 # spliced_intron 4304074-4304185 (orient:+) max_ev_support = 1 scaffold_3 + intron 4304074-4304185 asmbl_39966 scaffold_3 + retained_intron 4304074-4304185 asmbl_39967 // Retained and Spliced Intron # retained_intron 4889563-4889668 (orient:+) max_ev_support = 2 # spliced_intron 4889563-4889668 (orient:+) max_ev_support = 1 scaffold_3 + intron 4889563-4889668 asmbl_39998 scaffold_3 + retained_intron 4889563-4889668 asmbl_39997 // Retained and Spliced Intron # retained_intron 4953609-4954271 (orient:+) max_ev_support = 2 # spliced_intron 4953609-4954271 (orient:+) max_ev_support = 2 scaffold_3 + intron 4953609-4954271 asmbl_40006 scaffold_3 + retained_intron 4953609-4954271 asmbl_40005 // Retained and Spliced Intron # retained_intron 5006311-5007041 (orient:+) max_ev_support = 5 # spliced_intron 5006311-5007041 (orient:+) max_ev_support = 1 scaffold_3 + intron 5006311-5007041 asmbl_40017,asmbl_40019 scaffold_3 + retained_intron 5006311-5007041 asmbl_40011 // Retained and Spliced Intron # retained_intron 6658263-6658355 (orient:+) max_ev_support = 3 # spliced_intron 6658263-6658355 (orient:+) max_ev_support = 1 scaffold_3 + intron 6658263-6658355 asmbl_40063,asmbl_40066,asmbl_40067,asmbl_40068,asmbl_40070 scaffold_3 + retained_intron 6658263-6658355 asmbl_40060,asmbl_40061,asmbl_40062,asmbl_40064,asmbl_40065 // Retained and Spliced Intron # retained_intron 6658616-6658787 (orient:+) max_ev_support = 2 # spliced_intron 6658616-6658787 (orient:+) max_ev_support = 1 scaffold_3 + intron 6658616-6658787 asmbl_40063,asmbl_40066,asmbl_40067,asmbl_40068 scaffold_3 + retained_intron 6658616-6658787 asmbl_40060,asmbl_40061,asmbl_40062,asmbl_40064,asmbl_40065,asmbl_40070 // Retained and Spliced Intron # retained_intron 6659645-6660509 (orient:+) max_ev_support = 5 # spliced_intron 6659645-6660509 (orient:+) max_ev_support = 2 scaffold_3 + intron 6659645-6660509 asmbl_40061,asmbl_40066,asmbl_40068 scaffold_3 + retained_intron 6659645-6660509 asmbl_40060 // Retained and Spliced Intron # retained_intron 6659747-6660509 (orient:+) max_ev_support = 5 # spliced_intron 6659747-6660509 (orient:+) max_ev_support = 2 scaffold_3 + intron 6659747-6660509 asmbl_40062,asmbl_40063,asmbl_40064,asmbl_40065,asmbl_40067,asmbl_40070,asmbl_40071 scaffold_3 + retained_intron 6659747-6660509 asmbl_40060 // Retained and Spliced Intron # retained_intron 6659860-6660509 (orient:+) max_ev_support = 5 # spliced_intron 6659860-6660509 (orient:+) max_ev_support = 1 scaffold_3 + intron 6659860-6660509 asmbl_40072 scaffold_3 + retained_intron 6659860-6660509 asmbl_40060 // Retained and Spliced Intron # retained_intron 6658411-6658488 (orient:+) max_ev_support = 2 # spliced_intron 6658411-6658488 (orient:+) max_ev_support = 1 scaffold_3 + intron 6658411-6658488 asmbl_40060,asmbl_40062,asmbl_40063,asmbl_40067,asmbl_40068,asmbl_40070 scaffold_3 + retained_intron 6658411-6658488 asmbl_40061,asmbl_40064,asmbl_40065,asmbl_40066 // Retained and Spliced Intron # retained_intron 6661802-6662072 (orient:+) max_ev_support = 3 # spliced_intron 6661802-6662072 (orient:+) max_ev_support = 2 scaffold_3 + intron 6661802-6662072 asmbl_40074,asmbl_40076 scaffold_3 + retained_intron 6661802-6662072 asmbl_40073 // Retained and Spliced Intron # retained_intron 6692163-6692245 (orient:+) max_ev_support = 1 # spliced_intron 6692163-6692245 (orient:+) max_ev_support = 3 scaffold_3 + intron 6692163-6692245 asmbl_40083 scaffold_3 + retained_intron 6692163-6692245 asmbl_40084 // Exon Skipping and Retention # skipped_exon 6821999-6822283 (orient:+) max_ev_support = 1 # retained_exon 6822082-6822198 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 6822082-6822198 asmbl_40091 scaffold_3 + intron_skips_exon 6821999-6822283 asmbl_40092 // Retained and Spliced Intron # retained_intron 6871188-6871289 (orient:+) max_ev_support = 2 # spliced_intron 6871188-6871289 (orient:+) max_ev_support = 1 scaffold_3 + intron 6871188-6871289 asmbl_40104 scaffold_3 + retained_intron 6871188-6871289 asmbl_40102 // Retained and Spliced Intron # retained_intron 7593502-7593776 (orient:+) max_ev_support = 1 # spliced_intron 7593502-7593776 (orient:+) max_ev_support = 2 scaffold_3 + intron 7593502-7593776 asmbl_40128 scaffold_3 + retained_intron 7593502-7593776 asmbl_40130 // Retained and Spliced Intron # retained_intron 7727603-7727817 (orient:+) max_ev_support = 1 # spliced_intron 7727603-7727817 (orient:+) max_ev_support = 1 scaffold_3 + intron 7727603-7727817 asmbl_40134,asmbl_40137 scaffold_3 + retained_intron 7727603-7727817 asmbl_40135 // Retained and Spliced Intron # retained_intron 7739054-7739724 (orient:+) max_ev_support = 4 # spliced_intron 7739054-7739724 (orient:+) max_ev_support = 1 scaffold_3 + intron 7739054-7739724 asmbl_40140 scaffold_3 + retained_intron 7739054-7739724 asmbl_40138 // Retained and Spliced Intron # retained_intron 7927018-7927366 (orient:+) max_ev_support = 1 # spliced_intron 7927018-7927366 (orient:+) max_ev_support = 1 scaffold_3 + intron 7927018-7927366 asmbl_40145 scaffold_3 + retained_intron 7927018-7927366 asmbl_40143 // Exon Skipping and Retention # skipped_exon 7924972-7927366 (orient:+) max_ev_support = 1 # retained_exon 7926286-7927017 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 7926286-7927017 asmbl_40145 scaffold_3 + intron_skips_exon 7924972-7927366 asmbl_40144 // Retained and Spliced Intron # retained_intron 7972688-7972770 (orient:+) max_ev_support = 1 # spliced_intron 7972688-7972770 (orient:+) max_ev_support = 2 scaffold_3 + intron 7972688-7972770 asmbl_40147 scaffold_3 + retained_intron 7972688-7972770 asmbl_40148 // Retained and Spliced Intron # retained_intron 7972688-7972773 (orient:+) max_ev_support = 1 # spliced_intron 7972688-7972773 (orient:+) max_ev_support = 1 scaffold_3 + intron 7972688-7972773 asmbl_40149 scaffold_3 + retained_intron 7972688-7972773 asmbl_40148 // Exon Skipping and Retention # skipped_exon 8253370-8255934 (orient:+) max_ev_support = 1 # retained_exon 8253586-8255632 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 8253586-8253604,8253991-8254079,8254681-8254802,8255454-8255632 asmbl_40165 scaffold_3 + intron_skips_exon 8253370-8255934 asmbl_40166 // Exon Skipping and Retention # skipped_exon 8532827-8533627 (orient:+) max_ev_support = 1 # retained_exon 8533143-8533271 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 8533143-8533271 asmbl_40177 scaffold_3 + intron_skips_exon 8532827-8533627 asmbl_40176 // Retained and Spliced Intron # retained_intron 9516758-9517928 (orient:+) max_ev_support = 2 # spliced_intron 9516758-9517928 (orient:+) max_ev_support = 3 scaffold_3 + intron 9516758-9517928 asmbl_40185 scaffold_3 + retained_intron 9516758-9517928 asmbl_40184,asmbl_40186,asmbl_40187 // Retained and Spliced Intron # retained_intron 9517588-9517928 (orient:+) max_ev_support = 2 # spliced_intron 9517588-9517928 (orient:+) max_ev_support = 1 scaffold_3 + intron 9517588-9517928 asmbl_40188 scaffold_3 + retained_intron 9517588-9517928 asmbl_40184,asmbl_40186,asmbl_40187 // Retained and Spliced Intron # retained_intron 9518073-9518444 (orient:+) max_ev_support = 2 # spliced_intron 9518073-9518444 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518073-9518444 asmbl_40185,asmbl_40186,asmbl_40187 scaffold_3 + retained_intron 9518073-9518444 asmbl_40184 // Retained and Spliced Intron # retained_intron 9518619-9518734 (orient:+) max_ev_support = 2 # spliced_intron 9518619-9518734 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518619-9518734 asmbl_40185,asmbl_40186,asmbl_40187 scaffold_3 + retained_intron 9518619-9518734 asmbl_40184 // Retained and Spliced Intron # retained_intron 9518813-9518999 (orient:+) max_ev_support = 4 # spliced_intron 9518813-9518999 (orient:+) max_ev_support = 3 scaffold_3 + intron 9518813-9518999 asmbl_40185,asmbl_40186,asmbl_40187 scaffold_3 + retained_intron 9518813-9518999 asmbl_40184 // Retained and Spliced Intron # retained_intron 9515750-9516729 (orient:+) max_ev_support = 3 # spliced_intron 9515750-9516729 (orient:+) max_ev_support = 3 scaffold_3 + intron 9515750-9516729 asmbl_40184,asmbl_40185,asmbl_40187 scaffold_3 + retained_intron 9515750-9516729 asmbl_40186 // Exon Skipping and Retention # skipped_exon 10275118-10275967 (orient:+) max_ev_support = 2 # retained_exon 10275591-10275683 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10275591-10275683 asmbl_40205 scaffold_3 + intron_skips_exon 10275118-10275967 asmbl_40206,asmbl_40209,asmbl_40210,asmbl_40212 // Exon Skipping and Retention # skipped_exon 10274721-10275590 (orient:+) max_ev_support = 2 # retained_exon 10275025-10275117 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10275025-10275117 asmbl_40206,asmbl_40209,asmbl_40212 scaffold_3 + intron_skips_exon 10274721-10275590 asmbl_40205 // Exon Skipping and Retention # skipped_exon 10276182-10277684 (orient:+) max_ev_support = 2 # retained_exon 10276587-10276769 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10276587-10276769 asmbl_40206,asmbl_40208 scaffold_3 + intron_skips_exon 10276182-10277684 asmbl_40205,asmbl_40209 // Retained and Spliced Intron # retained_intron 10275118-10275967 (orient:+) max_ev_support = 1 # spliced_intron 10275118-10275967 (orient:+) max_ev_support = 2 scaffold_3 + intron 10275118-10275967 asmbl_40206,asmbl_40209,asmbl_40210,asmbl_40212 scaffold_3 + retained_intron 10275118-10275967 asmbl_40208 // Retained and Spliced Intron # retained_intron 10275684-10275967 (orient:+) max_ev_support = 1 # spliced_intron 10275684-10275967 (orient:+) max_ev_support = 2 scaffold_3 + intron 10275684-10275967 asmbl_40205 scaffold_3 + retained_intron 10275684-10275967 asmbl_40208 // Retained and Spliced Intron # retained_intron 10274721-10275024 (orient:+) max_ev_support = 1 # spliced_intron 10274721-10275024 (orient:+) max_ev_support = 2 scaffold_3 + intron 10274721-10275024 asmbl_40206,asmbl_40209,asmbl_40212 scaffold_3 + retained_intron 10274721-10275024 asmbl_40210 // Retained and Spliced Intron # retained_intron 10276182-10276586 (orient:+) max_ev_support = 3 # spliced_intron 10276182-10276586 (orient:+) max_ev_support = 2 scaffold_3 + intron 10276182-10276586 asmbl_40206,asmbl_40208,asmbl_40212 scaffold_3 + retained_intron 10276182-10276586 asmbl_40210 // Exon Skipping and Retention # skipped_exon 10296072-10297387 (orient:+) max_ev_support = 2 # retained_exon 10296535-10296612 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10296535-10296612 asmbl_40214 scaffold_3 + intron_skips_exon 10296072-10297387 asmbl_40215 // Retained and Spliced Intron # retained_intron 10304998-10305493 (orient:+) max_ev_support = 5 # spliced_intron 10304998-10305493 (orient:+) max_ev_support = 1 scaffold_3 + intron 10304998-10305493 asmbl_40217 scaffold_3 + retained_intron 10304998-10305493 asmbl_40216 // Retained and Spliced Intron # retained_intron 10304998-10305546 (orient:+) max_ev_support = 5 # spliced_intron 10304998-10305546 (orient:+) max_ev_support = 3 scaffold_3 + intron 10304998-10305546 asmbl_40218 scaffold_3 + retained_intron 10304998-10305546 asmbl_40216 // Retained and Spliced Intron # retained_intron 10305664-10306094 (orient:+) max_ev_support = 3 # spliced_intron 10305664-10306094 (orient:+) max_ev_support = 3 scaffold_3 + intron 10305664-10306094 asmbl_40217,asmbl_40218,asmbl_40221 scaffold_3 + retained_intron 10305664-10306094 asmbl_40216 // Exon Skipping and Retention # skipped_exon 10628316-10630201 (orient:+) max_ev_support = 2 # retained_exon 10628698-10628825 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 10628698-10628825 asmbl_40234 scaffold_3 + intron_skips_exon 10628316-10630201 asmbl_40235 // Retained and Spliced Intron # retained_intron 10628322-10628697 (orient:+) max_ev_support = 1 # spliced_intron 10628322-10628697 (orient:+) max_ev_support = 1 scaffold_3 + intron 10628322-10628697 asmbl_40234,asmbl_40241 scaffold_3 + retained_intron 10628322-10628697 asmbl_40236,asmbl_40237 // Retained and Spliced Intron # retained_intron 10628351-10628697 (orient:+) max_ev_support = 1 # spliced_intron 10628351-10628697 (orient:+) max_ev_support = 2 scaffold_3 + intron 10628351-10628697 asmbl_40238 scaffold_3 + retained_intron 10628351-10628697 asmbl_40236,asmbl_40237 // Exon Skipping and Retention # skipped_exon 10628826-10630201 (orient:+) max_ev_support = 1 # retained_exon 10629028-10629296 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 10629028-10629296 asmbl_40236,asmbl_40238,asmbl_40241 scaffold_3 + intron_skips_exon 10628826-10630201 asmbl_40234 // Retained and Spliced Intron # retained_intron 10756104-10756206 (orient:+) max_ev_support = 2 # spliced_intron 10756104-10756206 (orient:+) max_ev_support = 2 scaffold_3 + intron 10756104-10756206 asmbl_40246,asmbl_40248 scaffold_3 + retained_intron 10756104-10756206 asmbl_40247 // Retained and Spliced Intron # retained_intron 10756336-10756429 (orient:+) max_ev_support = 2 # spliced_intron 10756336-10756429 (orient:+) max_ev_support = 2 scaffold_3 + intron 10756336-10756429 asmbl_40246 scaffold_3 + retained_intron 10756336-10756429 asmbl_40247,asmbl_40248 // Retained and Spliced Intron # retained_intron 10849045-10849122 (orient:+) max_ev_support = 3 # spliced_intron 10849045-10849122 (orient:+) max_ev_support = 3 scaffold_3 + intron 10849045-10849122 asmbl_40259 scaffold_3 + retained_intron 10849045-10849122 asmbl_40258 // Retained and Spliced Intron # retained_intron 10929425-10929727 (orient:+) max_ev_support = 2 # spliced_intron 10929425-10929727 (orient:+) max_ev_support = 2 scaffold_3 + intron 10929425-10929727 asmbl_40272 scaffold_3 + retained_intron 10929425-10929727 asmbl_40273 // Retained and Spliced Intron # retained_intron 10937871-10938064 (orient:+) max_ev_support = 2 # spliced_intron 10937871-10938064 (orient:+) max_ev_support = 2 scaffold_3 + intron 10937871-10938064 asmbl_40275 scaffold_3 + retained_intron 10937871-10938064 asmbl_40274 // Retained and Spliced Intron # retained_intron 11270000-11270142 (orient:+) max_ev_support = 2 # spliced_intron 11270000-11270142 (orient:+) max_ev_support = 3 scaffold_3 + intron 11270000-11270142 asmbl_40288 scaffold_3 + retained_intron 11270000-11270142 asmbl_40289 // Retained and Spliced Intron # retained_intron 11404737-11404768 (orient:+) max_ev_support = 1 # spliced_intron 11404737-11404768 (orient:+) max_ev_support = 1 scaffold_3 + intron 11404737-11404768 asmbl_40304 scaffold_3 + retained_intron 11404737-11404768 asmbl_40303 // Retained and Spliced Intron # retained_intron 11526115-11526216 (orient:+) max_ev_support = 2 # spliced_intron 11526115-11526216 (orient:+) max_ev_support = 3 scaffold_3 + intron 11526115-11526216 asmbl_40314 scaffold_3 + retained_intron 11526115-11526216 asmbl_40315 // Exon Skipping and Retention # skipped_exon 11644642-11645915 (orient:+) max_ev_support = 1 # retained_exon 11645052-11645162 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 11645052-11645162 asmbl_40322 scaffold_3 + intron_skips_exon 11644642-11645915 asmbl_40323 // Retained and Spliced Intron # retained_intron 11654136-11654326 (orient:+) max_ev_support = 3 # spliced_intron 11654136-11654326 (orient:+) max_ev_support = 3 scaffold_3 + intron 11654136-11654326 asmbl_40325,asmbl_40326 scaffold_3 + retained_intron 11654136-11654326 asmbl_40324,asmbl_40327,asmbl_40328 // Exon Skipping and Retention # skipped_exon 11658956-11660776 (orient:+) max_ev_support = 4 # retained_exon 11659462-11659533 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 11659462-11659533 asmbl_40326,asmbl_40327 scaffold_3 + intron_skips_exon 11658956-11660776 asmbl_40324,asmbl_40325,asmbl_40328 // Exon Skipping and Retention # skipped_exon 11977944-11980935 (orient:+) max_ev_support = 1 # retained_exon 11978355-11978535 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 11978355-11978535 asmbl_40336 scaffold_3 + intron_skips_exon 11977944-11980935 asmbl_40338 // Retained and Spliced Intron # retained_intron 11997571-11997651 (orient:+) max_ev_support = 2 # spliced_intron 11997571-11997651 (orient:+) max_ev_support = 1 scaffold_3 + intron 11997571-11997651 asmbl_40342 scaffold_3 + retained_intron 11997571-11997651 asmbl_40341 // Exon Skipping and Retention # skipped_exon 12419601-12421743 (orient:+) max_ev_support = 2 # retained_exon 12421536-12421583 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 12421536-12421583 asmbl_40353 scaffold_3 + intron_skips_exon 12419601-12421743 asmbl_40354 // Retained and Spliced Intron # retained_intron 12445250-12446860 (orient:+) max_ev_support = 3 # spliced_intron 12445250-12446860 (orient:+) max_ev_support = 1 scaffold_3 + intron 12445250-12446860 asmbl_40358 scaffold_3 + retained_intron 12445250-12446860 asmbl_40357 // Retained and Spliced Intron # retained_intron 12774687-12774814 (orient:+) max_ev_support = 3 # spliced_intron 12774687-12774814 (orient:+) max_ev_support = 1 scaffold_3 + intron 12774687-12774814 asmbl_40369,asmbl_40370 scaffold_3 + retained_intron 12774687-12774814 asmbl_40368 // Retained and Spliced Intron # retained_intron 12773155-12773414 (orient:+) max_ev_support = 3 # spliced_intron 12773155-12773414 (orient:+) max_ev_support = 3 scaffold_3 + intron 12773155-12773414 asmbl_40370 scaffold_3 + retained_intron 12773155-12773414 asmbl_40369 // Exon Skipping and Retention # skipped_exon 13161152-13161618 (orient:+) max_ev_support = 1 # retained_exon 13161342-13161453 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 13161342-13161453 asmbl_40378,asmbl_40379,asmbl_40380,asmbl_40384 scaffold_3 + intron_skips_exon 13161152-13161618 asmbl_40383 // Retained and Spliced Intron # retained_intron 13160942-13161070 (orient:+) max_ev_support = 1 # spliced_intron 13160942-13161070 (orient:+) max_ev_support = 2 scaffold_3 + intron 13160942-13161070 asmbl_40378,asmbl_40379,asmbl_40380,asmbl_40383 scaffold_3 + retained_intron 13160942-13161070 asmbl_40384 // Retained and Spliced Intron # retained_intron 13179330-13179422 (orient:+) max_ev_support = 2 # spliced_intron 13179330-13179422 (orient:+) max_ev_support = 2 scaffold_3 + intron 13179330-13179422 asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40392,asmbl_40395 scaffold_3 + retained_intron 13179330-13179422 asmbl_40389 // Retained and Spliced Intron # retained_intron 13179592-13179723 (orient:+) max_ev_support = 1 # spliced_intron 13179592-13179723 (orient:+) max_ev_support = 2 scaffold_3 + intron 13179592-13179723 asmbl_40387,asmbl_40389,asmbl_40391,asmbl_40392,asmbl_40395 scaffold_3 + retained_intron 13179592-13179723 asmbl_40390 // Retained and Spliced Intron # retained_intron 13175895-13175983 (orient:+) max_ev_support = 1 # spliced_intron 13175895-13175983 (orient:+) max_ev_support = 2 scaffold_3 + intron 13175895-13175983 asmbl_40387,asmbl_40390,asmbl_40392,asmbl_40393,asmbl_40394 scaffold_3 + retained_intron 13175895-13175983 asmbl_40391 // Exon Skipping and Retention # skipped_exon 13176718-13177541 (orient:+) max_ev_support = 2 # retained_exon 13176884-13176898 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 13176884-13176898 asmbl_40392 scaffold_3 + intron_skips_exon 13176718-13177541 asmbl_40387,asmbl_40390,asmbl_40391,asmbl_40395 // Retained and Spliced Intron # retained_intron 13462730-13462851 (orient:+) max_ev_support = 1 # spliced_intron 13462730-13462851 (orient:+) max_ev_support = 2 scaffold_3 + intron 13462730-13462851 asmbl_40399 scaffold_3 + retained_intron 13462730-13462851 asmbl_40400 // Retained and Spliced Intron # retained_intron 13463114-13463211 (orient:+) max_ev_support = 1 # spliced_intron 13463114-13463211 (orient:+) max_ev_support = 2 scaffold_3 + intron 13463114-13463211 asmbl_40399,asmbl_40400 scaffold_3 + retained_intron 13463114-13463211 asmbl_40401 // Retained and Spliced Intron # retained_intron 13702911-13703499 (orient:+) max_ev_support = 2 # spliced_intron 13702911-13703499 (orient:+) max_ev_support = 3 scaffold_3 + intron 13702911-13703499 asmbl_40407,asmbl_40409,asmbl_40410 scaffold_3 + retained_intron 13702911-13703499 asmbl_40408,asmbl_40412 // Exon Skipping and Retention # skipped_exon 13700565-13702785 (orient:+) max_ev_support = 2 # retained_exon 13700820-13700902 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 13700820-13700902 asmbl_40410 scaffold_3 + intron_skips_exon 13700565-13702785 asmbl_40409 // Retained and Spliced Intron # retained_intron 13700565-13700819 (orient:+) max_ev_support = 1 # spliced_intron 13700565-13700819 (orient:+) max_ev_support = 2 scaffold_3 + intron 13700565-13700819 asmbl_40410 scaffold_3 + retained_intron 13700565-13700819 asmbl_40411 // Retained and Spliced Intron # retained_intron 13703667-13704187 (orient:+) max_ev_support = 1 # spliced_intron 13703667-13704187 (orient:+) max_ev_support = 3 scaffold_3 + intron 13703667-13704187 asmbl_40407,asmbl_40408,asmbl_40409,asmbl_40410 scaffold_3 + retained_intron 13703667-13704187 asmbl_40412 // Retained and Spliced Intron # retained_intron 13833535-13833619 (orient:+) max_ev_support = 2 # spliced_intron 13833535-13833619 (orient:+) max_ev_support = 1 scaffold_3 + intron 13833535-13833619 asmbl_40420 scaffold_3 + retained_intron 13833535-13833619 asmbl_40419 // Exon Skipping and Retention # skipped_exon 13833535-13836456 (orient:+) max_ev_support = 1 # retained_exon 13833620-13833814 (orient:+) max_ev_support = 1 scaffold_3 + retained_exons 13833620-13833814 asmbl_40420 scaffold_3 + intron_skips_exon 13833535-13836456 asmbl_40421 // Exon Skipping and Retention # skipped_exon 13896910-13897119 (orient:+) max_ev_support = 1 # retained_exon 13897006-13897025 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 13897006-13897025 asmbl_40424,asmbl_40426 scaffold_3 + intron_skips_exon 13896910-13897119 asmbl_40427,asmbl_40428 // Retained and Spliced Intron # retained_intron 13899490-13899649 (orient:+) max_ev_support = 2 # spliced_intron 13899490-13899649 (orient:+) max_ev_support = 2 scaffold_3 + intron 13899490-13899649 asmbl_40424,asmbl_40426,asmbl_40427,asmbl_40428 scaffold_3 + retained_intron 13899490-13899649 asmbl_40425 // Retained and Spliced Intron # retained_intron 13898905-13899019 (orient:+) max_ev_support = 1 # spliced_intron 13898905-13899019 (orient:+) max_ev_support = 2 scaffold_3 + intron 13898905-13899019 asmbl_40424,asmbl_40427,asmbl_40428 scaffold_3 + retained_intron 13898905-13899019 asmbl_40426 // Retained and Spliced Intron # retained_intron 13988445-13988538 (orient:+) max_ev_support = 3 # spliced_intron 13988445-13988538 (orient:+) max_ev_support = 1 scaffold_3 + intron 13988445-13988538 asmbl_40437 scaffold_3 + retained_intron 13988445-13988538 asmbl_40434,asmbl_40435,asmbl_40436,asmbl_40442 // Retained and Spliced Intron # retained_intron 13988803-13989050 (orient:+) max_ev_support = 3 # spliced_intron 13988803-13989050 (orient:+) max_ev_support = 3 scaffold_3 + intron 13988803-13989050 asmbl_40435,asmbl_40437 scaffold_3 + retained_intron 13988803-13989050 asmbl_40436 // Retained and Spliced Intron # retained_intron 13988803-13989079 (orient:+) max_ev_support = 3 # spliced_intron 13988803-13989079 (orient:+) max_ev_support = 3 scaffold_3 + intron 13988803-13989079 asmbl_40434,asmbl_40442 scaffold_3 + retained_intron 13988803-13989079 asmbl_40436 // Retained and Spliced Intron # retained_intron 14048563-14048700 (orient:+) max_ev_support = 2 # spliced_intron 14048563-14048700 (orient:+) max_ev_support = 1 scaffold_3 + intron 14048563-14048700 asmbl_40458 scaffold_3 + retained_intron 14048563-14048700 asmbl_40456 // Retained and Spliced Intron # retained_intron 14259319-14259409 (orient:+) max_ev_support = 3 # spliced_intron 14259319-14259409 (orient:+) max_ev_support = 2 scaffold_3 + intron 14259319-14259409 asmbl_40463,asmbl_40464,asmbl_40467,asmbl_40468 scaffold_3 + retained_intron 14259319-14259409 asmbl_40462 // Retained and Spliced Intron # retained_intron 14259583-14259877 (orient:+) max_ev_support = 3 # spliced_intron 14259583-14259877 (orient:+) max_ev_support = 2 scaffold_3 + intron 14259583-14259877 asmbl_40463 scaffold_3 + retained_intron 14259583-14259877 asmbl_40462,asmbl_40464,asmbl_40467 // Retained and Spliced Intron # retained_intron 14259715-14259877 (orient:+) max_ev_support = 3 # spliced_intron 14259715-14259877 (orient:+) max_ev_support = 1 scaffold_3 + intron 14259715-14259877 asmbl_40468 scaffold_3 + retained_intron 14259715-14259877 asmbl_40462,asmbl_40464,asmbl_40467 // Exon Skipping and Retention # skipped_exon 14331851-14332118 (orient:+) max_ev_support = 1 # retained_exon 14331973-14332041 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 14331973-14332041 asmbl_40469,asmbl_40471 scaffold_3 + intron_skips_exon 14331851-14332118 asmbl_40470 // Retained and Spliced Intron # retained_intron 14332211-14332313 (orient:+) max_ev_support = 2 # spliced_intron 14332211-14332313 (orient:+) max_ev_support = 1 scaffold_3 + intron 14332211-14332313 asmbl_40471 scaffold_3 + retained_intron 14332211-14332313 asmbl_40469,asmbl_40470 // Retained and Spliced Intron # retained_intron 14424172-14424368 (orient:+) max_ev_support = 3 # spliced_intron 14424172-14424368 (orient:+) max_ev_support = 3 scaffold_3 + intron 14424172-14424368 asmbl_40481,asmbl_40483 scaffold_3 + retained_intron 14424172-14424368 asmbl_40482 // Retained and Spliced Intron # retained_intron 14425017-14426154 (orient:+) max_ev_support = 3 # spliced_intron 14425017-14426154 (orient:+) max_ev_support = 3 scaffold_3 + intron 14425017-14426154 asmbl_40481 scaffold_3 + retained_intron 14425017-14426154 asmbl_40482,asmbl_40483 // Exon Skipping and Retention # skipped_exon 14479533-14479788 (orient:+) max_ev_support = 2 # retained_exon 14479687-14479761 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 14479687-14479761 asmbl_40490 scaffold_3 + intron_skips_exon 14479533-14479788 asmbl_40489 // Exon Skipping and Retention # skipped_exon 14668755-14671274 (orient:+) max_ev_support = 3 # retained_exon 14670173-14670250 (orient:+) max_ev_support = 3 scaffold_3 + retained_exons 14670173-14670250 asmbl_40503,asmbl_40505 scaffold_3 + intron_skips_exon 14668755-14671274 asmbl_40504 // Retained and Spliced Intron # retained_intron 14844379-14844569 (orient:+) max_ev_support = 1 # spliced_intron 14844379-14844569 (orient:+) max_ev_support = 2 scaffold_3 + intron 14844379-14844569 asmbl_40518 scaffold_3 + retained_intron 14844379-14844569 asmbl_40517 // Retained and Spliced Intron # retained_intron 15573354-15573483 (orient:+) max_ev_support = 1 # spliced_intron 15573354-15573483 (orient:+) max_ev_support = 2 scaffold_3 + intron 15573354-15573483 asmbl_40530,asmbl_40531 scaffold_3 + retained_intron 15573354-15573483 asmbl_40532,asmbl_40533,asmbl_40534 // Retained and Spliced Intron # retained_intron 16038460-16038558 (orient:+) max_ev_support = 1 # spliced_intron 16038460-16038558 (orient:+) max_ev_support = 3 scaffold_3 + intron 16038460-16038558 asmbl_40559 scaffold_3 + retained_intron 16038460-16038558 asmbl_40560 // Retained and Spliced Intron # retained_intron 16072334-16072424 (orient:+) max_ev_support = 1 # spliced_intron 16072334-16072424 (orient:+) max_ev_support = 2 scaffold_3 + intron 16072334-16072424 asmbl_40567,asmbl_40568 scaffold_3 + retained_intron 16072334-16072424 asmbl_40566 // Retained and Spliced Intron # retained_intron 16072508-16072620 (orient:+) max_ev_support = 3 # spliced_intron 16072508-16072620 (orient:+) max_ev_support = 2 scaffold_3 + intron 16072508-16072620 asmbl_40567,asmbl_40568 scaffold_3 + retained_intron 16072508-16072620 asmbl_40566 // Retained and Spliced Intron # retained_intron 17144430-17144593 (orient:+) max_ev_support = 1 # spliced_intron 17144430-17144593 (orient:+) max_ev_support = 2 scaffold_3 + intron 17144430-17144593 asmbl_40617,asmbl_40619 scaffold_3 + retained_intron 17144430-17144593 asmbl_40618,asmbl_40620 // Retained and Spliced Intron # retained_intron 17144659-17145212 (orient:+) max_ev_support = 1 # spliced_intron 17144659-17145212 (orient:+) max_ev_support = 2 scaffold_3 + intron 17144659-17145212 asmbl_40617 scaffold_3 + retained_intron 17144659-17145212 asmbl_40618,asmbl_40619,asmbl_40620 // Retained and Spliced Intron # retained_intron 17456078-17456973 (orient:+) max_ev_support = 2 # spliced_intron 17456078-17456973 (orient:+) max_ev_support = 3 scaffold_3 + intron 17456078-17456973 asmbl_40640,asmbl_40641 scaffold_3 + retained_intron 17456078-17456973 asmbl_40642,asmbl_40643,asmbl_40644 // Retained and Spliced Intron # retained_intron 17456083-17456973 (orient:+) max_ev_support = 2 # spliced_intron 17456083-17456973 (orient:+) max_ev_support = 1 scaffold_3 + intron 17456083-17456973 asmbl_40645 scaffold_3 + retained_intron 17456083-17456973 asmbl_40642,asmbl_40643,asmbl_40644 // Retained and Spliced Intron # retained_intron 17457148-17457253 (orient:+) max_ev_support = 2 # spliced_intron 17457148-17457253 (orient:+) max_ev_support = 3 scaffold_3 + intron 17457148-17457253 asmbl_40640,asmbl_40641,asmbl_40643,asmbl_40644,asmbl_40645 scaffold_3 + retained_intron 17457148-17457253 asmbl_40642 // Retained and Spliced Intron # retained_intron 17780927-17781032 (orient:+) max_ev_support = 3 # spliced_intron 17780927-17781032 (orient:+) max_ev_support = 1 scaffold_3 + intron 17780927-17781032 asmbl_40654 scaffold_3 + retained_intron 17780927-17781032 asmbl_40652 // Retained and Spliced Intron # retained_intron 17831614-17832488 (orient:+) max_ev_support = 1 # spliced_intron 17831614-17832488 (orient:+) max_ev_support = 2 scaffold_3 + intron 17831614-17832488 asmbl_40658 scaffold_3 + retained_intron 17831614-17832488 asmbl_40660,asmbl_40661 // Retained and Spliced Intron # retained_intron 17845439-17845779 (orient:+) max_ev_support = 1 # spliced_intron 17845439-17845779 (orient:+) max_ev_support = 2 scaffold_3 + intron 17845439-17845779 asmbl_40664 scaffold_3 + retained_intron 17845439-17845779 asmbl_40666,asmbl_40668 // Retained and Spliced Intron # retained_intron 17845439-17845840 (orient:+) max_ev_support = 1 # spliced_intron 17845439-17845840 (orient:+) max_ev_support = 2 scaffold_3 + intron 17845439-17845840 asmbl_40665,asmbl_40667 scaffold_3 + retained_intron 17845439-17845840 asmbl_40666,asmbl_40668 // Retained and Spliced Intron # retained_intron 18733461-18733619 (orient:+) max_ev_support = 1 # spliced_intron 18733461-18733619 (orient:+) max_ev_support = 2 scaffold_3 + intron 18733461-18733619 asmbl_40699 scaffold_3 + retained_intron 18733461-18733619 asmbl_40700 // Retained and Spliced Intron # retained_intron 18937824-18937857 (orient:+) max_ev_support = 1 # spliced_intron 18937824-18937857 (orient:+) max_ev_support = 1 scaffold_3 + intron 18937824-18937857 asmbl_40706 scaffold_3 + retained_intron 18937824-18937857 asmbl_40710 // Retained and Spliced Intron # retained_intron 18937824-18937873 (orient:+) max_ev_support = 1 # spliced_intron 18937824-18937873 (orient:+) max_ev_support = 1 scaffold_3 + intron 18937824-18937873 asmbl_40709 scaffold_3 + retained_intron 18937824-18937873 asmbl_40710 // Retained and Spliced Intron # retained_intron 18937840-18937873 (orient:+) max_ev_support = 1 # spliced_intron 18937840-18937873 (orient:+) max_ev_support = 1 scaffold_3 + intron 18937840-18937873 asmbl_40708 scaffold_3 + retained_intron 18937840-18937873 asmbl_40710 // Retained and Spliced Intron # retained_intron 18947965-18948081 (orient:+) max_ev_support = 1 # spliced_intron 18947965-18948081 (orient:+) max_ev_support = 2 scaffold_3 + intron 18947965-18948081 asmbl_40712 scaffold_3 + retained_intron 18947965-18948081 asmbl_40713 // Exon Skipping and Retention # skipped_exon 19802510-19803682 (orient:+) max_ev_support = 1 # retained_exon 19803452-19803532 (orient:+) max_ev_support = 2 scaffold_3 + retained_exons 19803452-19803532 asmbl_40729 scaffold_3 + intron_skips_exon 19802510-19803682 asmbl_40730,asmbl_40731 // Retained and Spliced Intron # retained_intron 1280-1585 (orient:+) max_ev_support = 2 # spliced_intron 1280-1585 (orient:+) max_ev_support = 2 scaffold_300 + intron 1280-1585 asmbl_40849 scaffold_300 + retained_intron 1280-1585 asmbl_40850 // Retained and Spliced Intron # retained_intron 1280-1588 (orient:+) max_ev_support = 2 # spliced_intron 1280-1588 (orient:+) max_ev_support = 1 scaffold_300 + intron 1280-1588 asmbl_40851 scaffold_300 + retained_intron 1280-1588 asmbl_40850 // Retained and Spliced Intron # retained_intron 2945-3159 (orient:+) max_ev_support = 1 # spliced_intron 2945-3159 (orient:+) max_ev_support = 2 scaffold_300 + intron 2945-3159 asmbl_40849,asmbl_40850,asmbl_40851,asmbl_40852 scaffold_300 + retained_intron 2945-3159 asmbl_40853 // Retained and Spliced Intron # retained_intron 358-614 (orient:+) max_ev_support = 2 # spliced_intron 358-614 (orient:+) max_ev_support = 1 scaffold_3026 + intron 358-614 asmbl_40862 scaffold_3026 + retained_intron 358-614 asmbl_40860 // Retained and Spliced Intron # retained_intron 362-614 (orient:+) max_ev_support = 2 # spliced_intron 362-614 (orient:+) max_ev_support = 1 scaffold_3026 + intron 362-614 asmbl_40861 scaffold_3026 + retained_intron 362-614 asmbl_40860 // Retained and Spliced Intron # retained_intron 488-641 (orient:-) max_ev_support = 3 # spliced_intron 488-641 (orient:-) max_ev_support = 1 scaffold_3030 - intron 488-641 asmbl_40864 scaffold_3030 - retained_intron 488-641 asmbl_40863 // Retained and Spliced Intron # retained_intron 312-455 (orient:+) max_ev_support = 1 # spliced_intron 312-455 (orient:+) max_ev_support = 1 scaffold_3170 + intron 312-455 asmbl_40889 scaffold_3170 + retained_intron 312-455 asmbl_40888 // Retained and Spliced Intron # retained_intron 6499-6583 (orient:-) max_ev_support = 3 # spliced_intron 6499-6583 (orient:-) max_ev_support = 1 scaffold_322 - intron 6499-6583 asmbl_40916 scaffold_322 - retained_intron 6499-6583 asmbl_40913 // Retained and Spliced Intron # retained_intron 6499-6737 (orient:-) max_ev_support = 3 # spliced_intron 6499-6737 (orient:-) max_ev_support = 1 scaffold_322 - intron 6499-6737 asmbl_40914 scaffold_322 - retained_intron 6499-6737 asmbl_40913 // Retained and Spliced Intron # retained_intron 6549-6737 (orient:-) max_ev_support = 3 # spliced_intron 6549-6737 (orient:-) max_ev_support = 1 scaffold_322 - intron 6549-6737 asmbl_40915 scaffold_322 - retained_intron 6549-6737 asmbl_40913 // Retained and Spliced Intron # retained_intron 6574-6737 (orient:-) max_ev_support = 3 # spliced_intron 6574-6737 (orient:-) max_ev_support = 1 scaffold_322 - intron 6574-6737 asmbl_40917 scaffold_322 - retained_intron 6574-6737 asmbl_40913 // Retained and Spliced Intron # retained_intron 608-748 (orient:+) max_ev_support = 1 # spliced_intron 608-748 (orient:+) max_ev_support = 1 scaffold_322 + intron 608-748 asmbl_40918 scaffold_322 + retained_intron 608-748 asmbl_40919 // Retained and Spliced Intron # retained_intron 809-1024 (orient:+) max_ev_support = 4 # spliced_intron 809-1024 (orient:+) max_ev_support = 1 scaffold_340 + intron 809-1024 asmbl_40967 scaffold_340 + retained_intron 809-1024 asmbl_40962,asmbl_40963,asmbl_40964 // Retained and Spliced Intron # retained_intron 809-1149 (orient:+) max_ev_support = 4 # spliced_intron 809-1149 (orient:+) max_ev_support = 1 scaffold_340 + intron 809-1149 asmbl_40965,asmbl_40966 scaffold_340 + retained_intron 809-1149 asmbl_40962,asmbl_40963,asmbl_40964 // Retained and Spliced Intron # retained_intron 2528-2711 (orient:+) max_ev_support = 2 # spliced_intron 2528-2711 (orient:+) max_ev_support = 2 scaffold_340 + intron 2528-2711 asmbl_40963,asmbl_40964,asmbl_40965,asmbl_40966,asmbl_40967 scaffold_340 + retained_intron 2528-2711 asmbl_40962 // Retained and Spliced Intron # retained_intron 2968-3178 (orient:+) max_ev_support = 1 # spliced_intron 2968-3178 (orient:+) max_ev_support = 2 scaffold_340 + intron 2968-3178 asmbl_40963,asmbl_40964,asmbl_40966,asmbl_40967 scaffold_340 + retained_intron 2968-3178 asmbl_40965 // Retained and Spliced Intron # retained_intron 3284-3408 (orient:+) max_ev_support = 3 # spliced_intron 3284-3408 (orient:+) max_ev_support = 1 scaffold_340 + intron 3284-3408 asmbl_40964,asmbl_40967 scaffold_340 + retained_intron 3284-3408 asmbl_40965,asmbl_40966 // Retained and Spliced Intron # retained_intron 3284-3508 (orient:+) max_ev_support = 3 # spliced_intron 3284-3508 (orient:+) max_ev_support = 1 scaffold_340 + intron 3284-3508 asmbl_40963 scaffold_340 + retained_intron 3284-3508 asmbl_40965,asmbl_40966 // Retained and Spliced Intron # retained_intron 4207-4444 (orient:+) max_ev_support = 1 # spliced_intron 4207-4444 (orient:+) max_ev_support = 1 scaffold_340 + intron 4207-4444 asmbl_40970 scaffold_340 + retained_intron 4207-4444 asmbl_40969 // Retained and Spliced Intron # retained_intron 1680-1727 (orient:+) max_ev_support = 1 # spliced_intron 1680-1727 (orient:+) max_ev_support = 1 scaffold_369 + intron 1680-1727 asmbl_41006 scaffold_369 + retained_intron 1680-1727 asmbl_41007 // Retained and Spliced Intron # retained_intron 1752-1811 (orient:+) max_ev_support = 1 # spliced_intron 1752-1811 (orient:+) max_ev_support = 1 scaffold_369 + intron 1752-1811 asmbl_41006 scaffold_369 + retained_intron 1752-1811 asmbl_41007 // Exon Skipping and Retention # skipped_exon 3031-4016 (orient:-) max_ev_support = 1 # retained_exon 3388-3594 (orient:-) max_ev_support = 2 scaffold_395 - retained_exons 3388-3594 asmbl_41032 scaffold_395 - intron_skips_exon 3031-4016 asmbl_41033 // Exon Skipping and Retention # skipped_exon 1391-3387 (orient:-) max_ev_support = 2 # retained_exon 2824-3030 (orient:-) max_ev_support = 1 scaffold_395 - retained_exons 2824-3030 asmbl_41033 scaffold_395 - intron_skips_exon 1391-3387 asmbl_41032 // Retained and Spliced Intron # retained_intron 105414-105497 (orient:-) max_ev_support = 1 # spliced_intron 105414-105497 (orient:-) max_ev_support = 2 scaffold_4 - intron 105414-105497 asmbl_41044 scaffold_4 - retained_intron 105414-105497 asmbl_41045 // Retained and Spliced Intron # retained_intron 115885-116152 (orient:-) max_ev_support = 3 # spliced_intron 115885-116152 (orient:-) max_ev_support = 2 scaffold_4 - intron 115885-116152 asmbl_41049 scaffold_4 - retained_intron 115885-116152 asmbl_41048 // Retained and Spliced Intron # retained_intron 232495-232641 (orient:-) max_ev_support = 3 # spliced_intron 232495-232641 (orient:-) max_ev_support = 1 scaffold_4 - intron 232495-232641 asmbl_41059 scaffold_4 - retained_intron 232495-232641 asmbl_41058 // Retained and Spliced Intron # retained_intron 306262-306547 (orient:-) max_ev_support = 3 # spliced_intron 306262-306547 (orient:-) max_ev_support = 3 scaffold_4 - intron 306262-306547 asmbl_41069 scaffold_4 - retained_intron 306262-306547 asmbl_41067 // Exon Skipping and Retention # skipped_exon 306262-307220 (orient:-) max_ev_support = 3 # retained_exon 306548-306715 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 306548-306715 asmbl_41069 scaffold_4 - intron_skips_exon 306262-307220 asmbl_41068 // Exon Skipping and Retention # skipped_exon 663764-664579 (orient:-) max_ev_support = 1 # retained_exon 664182-664287 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 664182-664287 asmbl_41082,asmbl_41084,asmbl_41085 scaffold_4 - intron_skips_exon 663764-664579 asmbl_41083 // Retained and Spliced Intron # retained_intron 753564-753737 (orient:-) max_ev_support = 3 # spliced_intron 753564-753737 (orient:-) max_ev_support = 1 scaffold_4 - intron 753564-753737 asmbl_41090 scaffold_4 - retained_intron 753564-753737 asmbl_41089 // Retained and Spliced Intron # retained_intron 1441879-1442446 (orient:-) max_ev_support = 3 # spliced_intron 1441879-1442446 (orient:-) max_ev_support = 1 scaffold_4 - intron 1441879-1442446 asmbl_41120 scaffold_4 - retained_intron 1441879-1442446 asmbl_41119 // Retained and Spliced Intron # retained_intron 3211226-3211758 (orient:-) max_ev_support = 5 # spliced_intron 3211226-3211758 (orient:-) max_ev_support = 1 scaffold_4 - intron 3211226-3211758 asmbl_41151 scaffold_4 - retained_intron 3211226-3211758 asmbl_41150 // Retained and Spliced Intron # retained_intron 3231032-3231615 (orient:-) max_ev_support = 1 # spliced_intron 3231032-3231615 (orient:-) max_ev_support = 1 scaffold_4 - intron 3231032-3231615 asmbl_41158,asmbl_41159 scaffold_4 - retained_intron 3231032-3231615 asmbl_41160 // Retained and Spliced Intron # retained_intron 3231784-3232008 (orient:-) max_ev_support = 1 # spliced_intron 3231784-3232008 (orient:-) max_ev_support = 1 scaffold_4 - intron 3231784-3232008 asmbl_41158,asmbl_41159 scaffold_4 - retained_intron 3231784-3232008 asmbl_41160 // Retained and Spliced Intron # retained_intron 3237101-3237225 (orient:-) max_ev_support = 2 # spliced_intron 3237101-3237225 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237101-3237225 asmbl_41164,asmbl_41166,asmbl_41167,asmbl_41168 scaffold_4 - retained_intron 3237101-3237225 asmbl_41163,asmbl_41165 // Retained and Spliced Intron # retained_intron 3237335-3237419 (orient:-) max_ev_support = 2 # spliced_intron 3237335-3237419 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237335-3237419 asmbl_41164,asmbl_41168 scaffold_4 - retained_intron 3237335-3237419 asmbl_41163,asmbl_41165 // Retained and Spliced Intron # retained_intron 3237335-3237423 (orient:-) max_ev_support = 2 # spliced_intron 3237335-3237423 (orient:-) max_ev_support = 1 scaffold_4 - intron 3237335-3237423 asmbl_41166 scaffold_4 - retained_intron 3237335-3237423 asmbl_41163,asmbl_41165 // Retained and Spliced Intron # retained_intron 3237335-3238369 (orient:-) max_ev_support = 2 # spliced_intron 3237335-3238369 (orient:-) max_ev_support = 1 scaffold_4 - intron 3237335-3238369 asmbl_41167 scaffold_4 - retained_intron 3237335-3238369 asmbl_41163 // Retained and Spliced Intron # retained_intron 3237961-3238369 (orient:-) max_ev_support = 2 # spliced_intron 3237961-3238369 (orient:-) max_ev_support = 2 scaffold_4 - intron 3237961-3238369 asmbl_41164,asmbl_41165 scaffold_4 - retained_intron 3237961-3238369 asmbl_41163,asmbl_41166,asmbl_41168 // Exon Skipping and Retention # skipped_exon 3237335-3238369 (orient:-) max_ev_support = 1 # retained_exon 3237420-3237960 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3237420-3237960 asmbl_41164 scaffold_4 - intron_skips_exon 3237335-3238369 asmbl_41167 // Retained and Spliced Intron # retained_intron 3243470-3243537 (orient:-) max_ev_support = 1 # spliced_intron 3243470-3243537 (orient:-) max_ev_support = 1 scaffold_4 - intron 3243470-3243537 asmbl_41170 scaffold_4 - retained_intron 3243470-3243537 asmbl_41169 // Exon Skipping and Retention # skipped_exon 3251176-3252469 (orient:-) max_ev_support = 1 # retained_exon 3252036-3252365 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3252036-3252088,3252266-3252365 asmbl_41171 scaffold_4 - intron_skips_exon 3251176-3252469 asmbl_41172 // Exon Skipping and Retention # skipped_exon 3440312-3442264 (orient:-) max_ev_support = 2 # retained_exon 3441462-3441542 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 3441462-3441542 asmbl_41186 scaffold_4 - intron_skips_exon 3440312-3442264 asmbl_41185 // Retained and Spliced Intron # retained_intron 3528251-3528359 (orient:-) max_ev_support = 1 # spliced_intron 3528251-3528359 (orient:-) max_ev_support = 1 scaffold_4 - intron 3528251-3528359 asmbl_41190 scaffold_4 - retained_intron 3528251-3528359 asmbl_41192 // Retained and Spliced Intron # retained_intron 3528251-3528471 (orient:-) max_ev_support = 1 # spliced_intron 3528251-3528471 (orient:-) max_ev_support = 1 scaffold_4 - intron 3528251-3528471 asmbl_41191 scaffold_4 - retained_intron 3528251-3528471 asmbl_41192 // Retained and Spliced Intron # retained_intron 3884999-3885621 (orient:-) max_ev_support = 4 # spliced_intron 3884999-3885621 (orient:-) max_ev_support = 1 scaffold_4 - intron 3884999-3885621 asmbl_41204 scaffold_4 - retained_intron 3884999-3885621 asmbl_41201,asmbl_41202,asmbl_41203 // Retained and Spliced Intron # retained_intron 4112991-4113116 (orient:-) max_ev_support = 1 # spliced_intron 4112991-4113116 (orient:-) max_ev_support = 2 scaffold_4 - intron 4112991-4113116 asmbl_41222,asmbl_41224 scaffold_4 - retained_intron 4112991-4113116 asmbl_41225 // Retained and Spliced Intron # retained_intron 4113203-4113283 (orient:-) max_ev_support = 1 # spliced_intron 4113203-4113283 (orient:-) max_ev_support = 2 scaffold_4 - intron 4113203-4113283 asmbl_41222,asmbl_41224,asmbl_41225 scaffold_4 - retained_intron 4113203-4113283 asmbl_41226 // Retained and Spliced Intron # retained_intron 4113453-4113870 (orient:-) max_ev_support = 1 # spliced_intron 4113453-4113870 (orient:-) max_ev_support = 2 scaffold_4 - intron 4113453-4113870 asmbl_41222,asmbl_41224,asmbl_41225,asmbl_41226 scaffold_4 - retained_intron 4113453-4113870 asmbl_41227 // Retained and Spliced Intron # retained_intron 4113774-4113870 (orient:-) max_ev_support = 1 # spliced_intron 4113774-4113870 (orient:-) max_ev_support = 1 scaffold_4 - intron 4113774-4113870 asmbl_41228 scaffold_4 - retained_intron 4113774-4113870 asmbl_41227 // Retained and Spliced Intron # retained_intron 4117926-4118044 (orient:-) max_ev_support = 2 # spliced_intron 4117926-4118044 (orient:-) max_ev_support = 1 scaffold_4 - intron 4117926-4118044 asmbl_41233 scaffold_4 - retained_intron 4117926-4118044 asmbl_41232 // Retained and Spliced Intron # retained_intron 4120774-4120939 (orient:-) max_ev_support = 4 # spliced_intron 4120774-4120939 (orient:-) max_ev_support = 2 scaffold_4 - intron 4120774-4120939 asmbl_41236,asmbl_41237 scaffold_4 - retained_intron 4120774-4120939 asmbl_41234,asmbl_41235 // Retained and Spliced Intron # retained_intron 4121063-4121376 (orient:-) max_ev_support = 4 # spliced_intron 4121063-4121376 (orient:-) max_ev_support = 2 scaffold_4 - intron 4121063-4121376 asmbl_41237 scaffold_4 - retained_intron 4121063-4121376 asmbl_41234,asmbl_41235,asmbl_41236 // Retained and Spliced Intron # retained_intron 4121525-4121687 (orient:-) max_ev_support = 4 # spliced_intron 4121525-4121687 (orient:-) max_ev_support = 2 scaffold_4 - intron 4121525-4121687 asmbl_41237 scaffold_4 - retained_intron 4121525-4121687 asmbl_41234,asmbl_41236 // Retained and Spliced Intron # retained_intron 4121588-4121687 (orient:-) max_ev_support = 2 # spliced_intron 4121588-4121687 (orient:-) max_ev_support = 2 scaffold_4 - intron 4121588-4121687 asmbl_41235 scaffold_4 - retained_intron 4121588-4121687 asmbl_41234,asmbl_41236 // Retained and Spliced Intron # retained_intron 4423769-4423970 (orient:-) max_ev_support = 1 # spliced_intron 4423769-4423970 (orient:-) max_ev_support = 2 scaffold_4 - intron 4423769-4423970 asmbl_41249,asmbl_41251 scaffold_4 - retained_intron 4423769-4423970 asmbl_41250,asmbl_41252 // Retained and Spliced Intron # retained_intron 4498633-4498751 (orient:-) max_ev_support = 2 # spliced_intron 4498633-4498751 (orient:-) max_ev_support = 3 scaffold_4 - intron 4498633-4498751 asmbl_41256,asmbl_41258 scaffold_4 - retained_intron 4498633-4498751 asmbl_41257 // Retained and Spliced Intron # retained_intron 4890208-4890382 (orient:-) max_ev_support = 2 # spliced_intron 4890208-4890382 (orient:-) max_ev_support = 2 scaffold_4 - intron 4890208-4890382 asmbl_41276 scaffold_4 - retained_intron 4890208-4890382 asmbl_41277 // Exon Skipping and Retention # skipped_exon 4896325-4898259 (orient:-) max_ev_support = 2 # retained_exon 4897738-4897922 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 4897738-4897922 asmbl_41280 scaffold_4 - intron_skips_exon 4896325-4898259 asmbl_41279 // Exon Skipping and Retention # skipped_exon 5033786-5035431 (orient:-) max_ev_support = 1 # retained_exon 5034529-5034615 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5034529-5034615 asmbl_41288 scaffold_4 - intron_skips_exon 5033786-5035431 asmbl_41290 // Retained and Spliced Intron # retained_intron 5183708-5183825 (orient:-) max_ev_support = 3 # spliced_intron 5183708-5183825 (orient:-) max_ev_support = 2 scaffold_4 - intron 5183708-5183825 asmbl_41299,asmbl_41300,asmbl_41301 scaffold_4 - retained_intron 5183708-5183825 asmbl_41298 // Retained and Spliced Intron # retained_intron 5215330-5215445 (orient:-) max_ev_support = 2 # spliced_intron 5215330-5215445 (orient:-) max_ev_support = 2 scaffold_4 - intron 5215330-5215445 asmbl_41304 scaffold_4 - retained_intron 5215330-5215445 asmbl_41303 // Exon Skipping and Retention # skipped_exon 5221309-5222170 (orient:-) max_ev_support = 3 # retained_exon 5221540-5221661 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 5221540-5221661 asmbl_41307 scaffold_4 - intron_skips_exon 5221309-5222170 asmbl_41306 // Exon Skipping and Retention # skipped_exon 5228399-5231130 (orient:-) max_ev_support = 2 # retained_exon 5230622-5230742 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 5230622-5230742 asmbl_41310 scaffold_4 - intron_skips_exon 5228399-5231130 asmbl_41309,asmbl_41312 // Retained and Spliced Intron # retained_intron 5230743-5231130 (orient:-) max_ev_support = 2 # spliced_intron 5230743-5231130 (orient:-) max_ev_support = 2 scaffold_4 - intron 5230743-5231130 asmbl_41310,asmbl_41314 scaffold_4 - retained_intron 5230743-5231130 asmbl_41311,asmbl_41313 // Retained and Spliced Intron # retained_intron 5231186-5231400 (orient:-) max_ev_support = 2 # spliced_intron 5231186-5231400 (orient:-) max_ev_support = 2 scaffold_4 - intron 5231186-5231400 asmbl_41309,asmbl_41310,asmbl_41314 scaffold_4 - retained_intron 5231186-5231400 asmbl_41311,asmbl_41313 // Retained and Spliced Intron # retained_intron 5228399-5228662 (orient:-) max_ev_support = 2 # spliced_intron 5228399-5228662 (orient:-) max_ev_support = 2 scaffold_4 - intron 5228399-5228662 asmbl_41311 scaffold_4 - retained_intron 5228399-5228662 asmbl_41313,asmbl_41314 // Retained and Spliced Intron # retained_intron 5228399-5230621 (orient:-) max_ev_support = 2 # spliced_intron 5228399-5230621 (orient:-) max_ev_support = 2 scaffold_4 - intron 5228399-5230621 asmbl_41310 scaffold_4 - retained_intron 5228399-5230621 asmbl_41313,asmbl_41314 // Retained and Spliced Intron # retained_intron 5228399-5231130 (orient:-) max_ev_support = 2 # spliced_intron 5228399-5231130 (orient:-) max_ev_support = 2 scaffold_4 - intron 5228399-5231130 asmbl_41309,asmbl_41312 scaffold_4 - retained_intron 5228399-5231130 asmbl_41313 // Retained and Spliced Intron # retained_intron 5444968-5445072 (orient:-) max_ev_support = 2 # spliced_intron 5444968-5445072 (orient:-) max_ev_support = 2 scaffold_4 - intron 5444968-5445072 asmbl_41342 scaffold_4 - retained_intron 5444968-5445072 asmbl_41341 // Exon Skipping and Retention # skipped_exon 5651119-5651696 (orient:-) max_ev_support = 1 # retained_exon 5651380-5651422 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5651380-5651422 asmbl_41352,asmbl_41357,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369 scaffold_4 - intron_skips_exon 5651119-5651696 asmbl_41354,asmbl_41364 // Retained and Spliced Intron # retained_intron 5653238-5653334 (orient:-) max_ev_support = 1 # spliced_intron 5653238-5653334 (orient:-) max_ev_support = 1 scaffold_4 - intron 5653238-5653334 asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41363,asmbl_41368 scaffold_4 - retained_intron 5653238-5653334 asmbl_41352,asmbl_41354,asmbl_41358,asmbl_41365,asmbl_41366,asmbl_41369 // Retained and Spliced Intron # retained_intron 5648305-5648753 (orient:-) max_ev_support = 2 # spliced_intron 5648305-5648753 (orient:-) max_ev_support = 2 scaffold_4 - intron 5648305-5648753 asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41369,asmbl_41370 scaffold_4 - retained_intron 5648305-5648753 asmbl_41353,asmbl_41371 // Retained and Spliced Intron # retained_intron 5648812-5648909 (orient:-) max_ev_support = 2 # spliced_intron 5648812-5648909 (orient:-) max_ev_support = 1 scaffold_4 - intron 5648812-5648909 asmbl_41369 scaffold_4 - retained_intron 5648812-5648909 asmbl_41353,asmbl_41355,asmbl_41371 // Retained and Spliced Intron # retained_intron 5648812-5648953 (orient:-) max_ev_support = 2 # spliced_intron 5648812-5648953 (orient:-) max_ev_support = 1 scaffold_4 - intron 5648812-5648953 asmbl_41370 scaffold_4 - retained_intron 5648812-5648953 asmbl_41353,asmbl_41355,asmbl_41371 // Retained and Spliced Intron # retained_intron 5648812-5649001 (orient:-) max_ev_support = 2 # spliced_intron 5648812-5649001 (orient:-) max_ev_support = 2 scaffold_4 - intron 5648812-5649001 asmbl_41352,asmbl_41354 scaffold_4 - retained_intron 5648812-5649001 asmbl_41353,asmbl_41355,asmbl_41371 // Retained and Spliced Intron # retained_intron 5651119-5651379 (orient:-) max_ev_support = 1 # spliced_intron 5651119-5651379 (orient:-) max_ev_support = 1 scaffold_4 - intron 5651119-5651379 asmbl_41352,asmbl_41357,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369 scaffold_4 - retained_intron 5651119-5651379 asmbl_41355,asmbl_41359,asmbl_41360,asmbl_41361,asmbl_41362,asmbl_41368 // Retained and Spliced Intron # retained_intron 5651119-5651696 (orient:-) max_ev_support = 1 # spliced_intron 5651119-5651696 (orient:-) max_ev_support = 1 scaffold_4 - intron 5651119-5651696 asmbl_41354,asmbl_41364 scaffold_4 - retained_intron 5651119-5651696 asmbl_41355,asmbl_41361,asmbl_41368 // Retained and Spliced Intron # retained_intron 5651423-5651635 (orient:-) max_ev_support = 1 # spliced_intron 5651423-5651635 (orient:-) max_ev_support = 2 scaffold_4 - intron 5651423-5651635 asmbl_41352,asmbl_41356,asmbl_41357,asmbl_41359,asmbl_41360,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41369 scaffold_4 - retained_intron 5651423-5651635 asmbl_41355,asmbl_41361,asmbl_41368 // Retained and Spliced Intron # retained_intron 5651885-5652027 (orient:-) max_ev_support = 2 # spliced_intron 5651885-5652027 (orient:-) max_ev_support = 1 scaffold_4 - intron 5651885-5652027 asmbl_41361 scaffold_4 - retained_intron 5651885-5652027 asmbl_41355,asmbl_41356,asmbl_41360,asmbl_41364 // Retained and Spliced Intron # retained_intron 5651946-5652054 (orient:-) max_ev_support = 2 # spliced_intron 5651946-5652054 (orient:-) max_ev_support = 1 scaffold_4 - intron 5651946-5652054 asmbl_41352,asmbl_41354,asmbl_41357,asmbl_41359,asmbl_41362,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369 scaffold_4 - retained_intron 5651946-5652054 asmbl_41355,asmbl_41356,asmbl_41360,asmbl_41364 // Retained and Spliced Intron # retained_intron 5651747-5651850 (orient:-) max_ev_support = 2 # spliced_intron 5651747-5651850 (orient:-) max_ev_support = 1 scaffold_4 - intron 5651747-5651850 asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41360,asmbl_41361,asmbl_41362,asmbl_41363,asmbl_41364,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369 scaffold_4 - retained_intron 5651747-5651850 asmbl_41356 // Retained and Spliced Intron # retained_intron 5653074-5653166 (orient:-) max_ev_support = 1 # spliced_intron 5653074-5653166 (orient:-) max_ev_support = 1 scaffold_4 - intron 5653074-5653166 asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41359,asmbl_41363,asmbl_41365,asmbl_41366,asmbl_41368,asmbl_41369 scaffold_4 - retained_intron 5653074-5653166 asmbl_41358 // Retained and Spliced Intron # retained_intron 5650431-5650953 (orient:-) max_ev_support = 1 # spliced_intron 5650431-5650953 (orient:-) max_ev_support = 1 scaffold_4 - intron 5650431-5650953 asmbl_41352,asmbl_41354,asmbl_41355,asmbl_41357,asmbl_41364,asmbl_41365,asmbl_41368,asmbl_41369 scaffold_4 - retained_intron 5650431-5650953 asmbl_41363,asmbl_41366 // Exon Skipping and Retention # skipped_exon 5738957-5739769 (orient:-) max_ev_support = 2 # retained_exon 5739522-5739541 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 5739522-5739541 asmbl_41376 scaffold_4 - intron_skips_exon 5738957-5739769 asmbl_41374 // Retained and Spliced Intron # retained_intron 5772794-5774235 (orient:-) max_ev_support = 2 # spliced_intron 5772794-5774235 (orient:-) max_ev_support = 3 scaffold_4 - intron 5772794-5774235 asmbl_41377 scaffold_4 - retained_intron 5772794-5774235 asmbl_41378 // Retained and Spliced Intron # retained_intron 6129993-6130181 (orient:-) max_ev_support = 1 # spliced_intron 6129993-6130181 (orient:-) max_ev_support = 1 scaffold_4 - intron 6129993-6130181 asmbl_41394 scaffold_4 - retained_intron 6129993-6130181 asmbl_41393 // Retained and Spliced Intron # retained_intron 6188631-6188800 (orient:-) max_ev_support = 1 # spliced_intron 6188631-6188800 (orient:-) max_ev_support = 3 scaffold_4 - intron 6188631-6188800 asmbl_41401 scaffold_4 - retained_intron 6188631-6188800 asmbl_41404,asmbl_41405 // Exon Skipping and Retention # skipped_exon 6280167-6283128 (orient:-) max_ev_support = 2 # retained_exon 6282538-6282644 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 6282538-6282644 asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41413 scaffold_4 - intron_skips_exon 6280167-6283128 asmbl_41410 // Retained and Spliced Intron # retained_intron 6286227-6286323 (orient:-) max_ev_support = 2 # spliced_intron 6286227-6286323 (orient:-) max_ev_support = 3 scaffold_4 - intron 6286227-6286323 asmbl_41408,asmbl_41411 scaffold_4 - retained_intron 6286227-6286323 asmbl_41409 // Retained and Spliced Intron # retained_intron 6286227-6286678 (orient:-) max_ev_support = 2 # spliced_intron 6286227-6286678 (orient:-) max_ev_support = 3 scaffold_4 - intron 6286227-6286678 asmbl_41407 scaffold_4 - retained_intron 6286227-6286678 asmbl_41409 // Retained and Spliced Intron # retained_intron 6282645-6283128 (orient:-) max_ev_support = 2 # spliced_intron 6282645-6283128 (orient:-) max_ev_support = 3 scaffold_4 - intron 6282645-6283128 asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41413 scaffold_4 - retained_intron 6282645-6283128 asmbl_41411 // Retained and Spliced Intron # retained_intron 6283224-6283378 (orient:-) max_ev_support = 1 # spliced_intron 6283224-6283378 (orient:-) max_ev_support = 3 scaffold_4 - intron 6283224-6283378 asmbl_41407,asmbl_41408,asmbl_41409,asmbl_41410,asmbl_41411 scaffold_4 - retained_intron 6283224-6283378 asmbl_41413 // Retained and Spliced Intron # retained_intron 6672886-6673441 (orient:-) max_ev_support = 3 # spliced_intron 6672886-6673441 (orient:-) max_ev_support = 2 scaffold_4 - intron 6672886-6673441 asmbl_41433,asmbl_41434 scaffold_4 - retained_intron 6672886-6673441 asmbl_41432 // Retained and Spliced Intron # retained_intron 7198052-7199617 (orient:-) max_ev_support = 4 # spliced_intron 7198052-7199617 (orient:-) max_ev_support = 1 scaffold_4 - intron 7198052-7199617 asmbl_41440 scaffold_4 - retained_intron 7198052-7199617 asmbl_41439 // Exon Skipping and Retention # skipped_exon 7316676-7317290 (orient:-) max_ev_support = 1 # retained_exon 7316915-7317091 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 7316915-7317091 asmbl_41446 scaffold_4 - intron_skips_exon 7316676-7317290 asmbl_41445 // Retained and Spliced Intron # retained_intron 7346985-7347256 (orient:-) max_ev_support = 2 # spliced_intron 7346985-7347256 (orient:-) max_ev_support = 2 scaffold_4 - intron 7346985-7347256 asmbl_41450 scaffold_4 - retained_intron 7346985-7347256 asmbl_41449 // Retained and Spliced Intron # retained_intron 7380297-7380425 (orient:-) max_ev_support = 2 # spliced_intron 7380297-7380425 (orient:-) max_ev_support = 1 scaffold_4 - intron 7380297-7380425 asmbl_41454 scaffold_4 - retained_intron 7380297-7380425 asmbl_41453 // Retained and Spliced Intron # retained_intron 8097999-8098087 (orient:-) max_ev_support = 1 # spliced_intron 8097999-8098087 (orient:-) max_ev_support = 1 scaffold_4 - intron 8097999-8098087 asmbl_41486 scaffold_4 - retained_intron 8097999-8098087 asmbl_41485 // Retained and Spliced Intron # retained_intron 8246234-8246442 (orient:-) max_ev_support = 1 # spliced_intron 8246234-8246442 (orient:-) max_ev_support = 1 scaffold_4 - intron 8246234-8246442 asmbl_41506 scaffold_4 - retained_intron 8246234-8246442 asmbl_41507 // Retained and Spliced Intron # retained_intron 8426956-8427185 (orient:-) max_ev_support = 1 # spliced_intron 8426956-8427185 (orient:-) max_ev_support = 2 scaffold_4 - intron 8426956-8427185 asmbl_41513 scaffold_4 - retained_intron 8426956-8427185 asmbl_41514 // Retained and Spliced Intron # retained_intron 8427334-8427438 (orient:-) max_ev_support = 1 # spliced_intron 8427334-8427438 (orient:-) max_ev_support = 2 scaffold_4 - intron 8427334-8427438 asmbl_41513 scaffold_4 - retained_intron 8427334-8427438 asmbl_41514 // Retained and Spliced Intron # retained_intron 8427515-8427786 (orient:-) max_ev_support = 1 # spliced_intron 8427515-8427786 (orient:-) max_ev_support = 2 scaffold_4 - intron 8427515-8427786 asmbl_41513 scaffold_4 - retained_intron 8427515-8427786 asmbl_41514 // Retained and Spliced Intron # retained_intron 8619480-8619572 (orient:-) max_ev_support = 1 # spliced_intron 8619480-8619572 (orient:-) max_ev_support = 3 scaffold_4 - intron 8619480-8619572 asmbl_41519 scaffold_4 - retained_intron 8619480-8619572 asmbl_41521 // Retained and Spliced Intron # retained_intron 8822899-8822991 (orient:-) max_ev_support = 2 # spliced_intron 8822899-8822991 (orient:-) max_ev_support = 2 scaffold_4 - intron 8822899-8822991 asmbl_41531 scaffold_4 - retained_intron 8822899-8822991 asmbl_41532 // Exon Skipping and Retention # skipped_exon 8987818-8989559 (orient:-) max_ev_support = 2 # retained_exon 8989365-8989383 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 8989365-8989383 asmbl_41537 scaffold_4 - intron_skips_exon 8987818-8989559 asmbl_41536,asmbl_41538,asmbl_41539,asmbl_41540 // Exon Skipping and Retention # skipped_exon 8989635-8991065 (orient:-) max_ev_support = 2 # retained_exon 8990668-8990697 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 8990668-8990697 asmbl_41538 scaffold_4 - intron_skips_exon 8989635-8991065 asmbl_41536 // Exon Skipping and Retention # skipped_exon 8989644-8991065 (orient:-) max_ev_support = 1 # retained_exon 8990668-8990697 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 8990668-8990697 asmbl_41538 scaffold_4 - intron_skips_exon 8989644-8991065 asmbl_41540 // Retained and Spliced Intron # retained_intron 8989384-8989559 (orient:-) max_ev_support = 2 # spliced_intron 8989384-8989559 (orient:-) max_ev_support = 1 scaffold_4 - intron 8989384-8989559 asmbl_41537 scaffold_4 - retained_intron 8989384-8989559 asmbl_41541 // Retained and Spliced Intron # retained_intron 9344094-9344316 (orient:-) max_ev_support = 1 # spliced_intron 9344094-9344316 (orient:-) max_ev_support = 2 scaffold_4 - intron 9344094-9344316 asmbl_41546,asmbl_41549 scaffold_4 - retained_intron 9344094-9344316 asmbl_41547,asmbl_41548 // Retained and Spliced Intron # retained_intron 9343784-9343976 (orient:-) max_ev_support = 1 # spliced_intron 9343784-9343976 (orient:-) max_ev_support = 2 scaffold_4 - intron 9343784-9343976 asmbl_41546,asmbl_41547 scaffold_4 - retained_intron 9343784-9343976 asmbl_41548,asmbl_41549 // Retained and Spliced Intron # retained_intron 9965598-9965735 (orient:-) max_ev_support = 2 # spliced_intron 9965598-9965735 (orient:-) max_ev_support = 1 scaffold_4 - intron 9965598-9965735 asmbl_41572 scaffold_4 - retained_intron 9965598-9965735 asmbl_41570 // Exon Skipping and Retention # skipped_exon 10451857-10452576 (orient:-) max_ev_support = 1 # retained_exon 10452291-10452441 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 10452291-10452441 asmbl_41588,asmbl_41589,asmbl_41590,asmbl_41594,asmbl_41597 scaffold_4 - intron_skips_exon 10451857-10452576 asmbl_41596 // Retained and Spliced Intron # retained_intron 10447539-10447632 (orient:-) max_ev_support = 1 # spliced_intron 10447539-10447632 (orient:-) max_ev_support = 2 scaffold_4 - intron 10447539-10447632 asmbl_41588,asmbl_41589,asmbl_41590,asmbl_41592,asmbl_41593,asmbl_41594,asmbl_41596 scaffold_4 - retained_intron 10447539-10447632 asmbl_41595 // Retained and Spliced Intron # retained_intron 10588124-10588890 (orient:-) max_ev_support = 2 # spliced_intron 10588124-10588890 (orient:-) max_ev_support = 3 scaffold_4 - intron 10588124-10588890 asmbl_41599 scaffold_4 - retained_intron 10588124-10588890 asmbl_41600 // Retained and Spliced Intron # retained_intron 10872473-10872693 (orient:-) max_ev_support = 1 # spliced_intron 10872473-10872693 (orient:-) max_ev_support = 2 scaffold_4 - intron 10872473-10872693 asmbl_41604,asmbl_41605 scaffold_4 - retained_intron 10872473-10872693 asmbl_41606,asmbl_41607 // Retained and Spliced Intron # retained_intron 10872269-10872362 (orient:-) max_ev_support = 1 # spliced_intron 10872269-10872362 (orient:-) max_ev_support = 2 scaffold_4 - intron 10872269-10872362 asmbl_41604,asmbl_41605,asmbl_41606 scaffold_4 - retained_intron 10872269-10872362 asmbl_41607 // Retained and Spliced Intron # retained_intron 10924315-10924565 (orient:-) max_ev_support = 2 # spliced_intron 10924315-10924565 (orient:-) max_ev_support = 2 scaffold_4 - intron 10924315-10924565 asmbl_41614 scaffold_4 - retained_intron 10924315-10924565 asmbl_41615 // Retained and Spliced Intron # retained_intron 11986664-11986803 (orient:-) max_ev_support = 3 # spliced_intron 11986664-11986803 (orient:-) max_ev_support = 2 scaffold_4 - intron 11986664-11986803 asmbl_41631 scaffold_4 - retained_intron 11986664-11986803 asmbl_41630 // Retained and Spliced Intron # retained_intron 12374031-12374180 (orient:-) max_ev_support = 1 # spliced_intron 12374031-12374180 (orient:-) max_ev_support = 2 scaffold_4 - intron 12374031-12374180 asmbl_41649,asmbl_41651 scaffold_4 - retained_intron 12374031-12374180 asmbl_41650 // Retained and Spliced Intron # retained_intron 12380946-12380988 (orient:-) max_ev_support = 2 # spliced_intron 12380946-12380988 (orient:-) max_ev_support = 1 scaffold_4 - intron 12380946-12380988 asmbl_41655 scaffold_4 - retained_intron 12380946-12380988 asmbl_41653,asmbl_41654 // Exon Skipping and Retention # skipped_exon 12571017-12571399 (orient:-) max_ev_support = 2 # retained_exon 12571256-12571368 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 12571256-12571368 asmbl_41674 scaffold_4 - intron_skips_exon 12571017-12571399 asmbl_41675 // Retained and Spliced Intron # retained_intron 12571017-12571255 (orient:-) max_ev_support = 1 # spliced_intron 12571017-12571255 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571017-12571255 asmbl_41674 scaffold_4 - retained_intron 12571017-12571255 asmbl_41676 // Retained and Spliced Intron # retained_intron 12571017-12571399 (orient:-) max_ev_support = 1 # spliced_intron 12571017-12571399 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571017-12571399 asmbl_41675 scaffold_4 - retained_intron 12571017-12571399 asmbl_41676 // Retained and Spliced Intron # retained_intron 12571369-12571452 (orient:-) max_ev_support = 1 # spliced_intron 12571369-12571452 (orient:-) max_ev_support = 2 scaffold_4 - intron 12571369-12571452 asmbl_41674 scaffold_4 - retained_intron 12571369-12571452 asmbl_41676 // Exon Skipping and Retention # skipped_exon 12628852-12629485 (orient:-) max_ev_support = 1 # retained_exon 12629160-12629249 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 12629160-12629249 asmbl_41681,asmbl_41683 scaffold_4 - intron_skips_exon 12628852-12629485 asmbl_41684 // Retained and Spliced Intron # retained_intron 12628852-12629159 (orient:-) max_ev_support = 2 # spliced_intron 12628852-12629159 (orient:-) max_ev_support = 2 scaffold_4 - intron 12628852-12629159 asmbl_41681,asmbl_41683 scaffold_4 - retained_intron 12628852-12629159 asmbl_41682 // Exon Skipping and Retention # skipped_exon 12641070-12642425 (orient:-) max_ev_support = 3 # retained_exon 12641759-12641861 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 12641759-12641861 asmbl_41686 scaffold_4 - intron_skips_exon 12641070-12642425 asmbl_41687 // Retained and Spliced Intron # retained_intron 12689403-12689673 (orient:-) max_ev_support = 2 # spliced_intron 12689403-12689673 (orient:-) max_ev_support = 1 scaffold_4 - intron 12689403-12689673 asmbl_41693,asmbl_41697 scaffold_4 - retained_intron 12689403-12689673 asmbl_41694 // Retained and Spliced Intron # retained_intron 12690853-12690998 (orient:-) max_ev_support = 2 # spliced_intron 12690853-12690998 (orient:-) max_ev_support = 2 scaffold_4 - intron 12690853-12690998 asmbl_41695,asmbl_41697 scaffold_4 - retained_intron 12690853-12690998 asmbl_41696 // Retained and Spliced Intron # retained_intron 12691056-12691283 (orient:-) max_ev_support = 2 # spliced_intron 12691056-12691283 (orient:-) max_ev_support = 2 scaffold_4 - intron 12691056-12691283 asmbl_41695,asmbl_41697 scaffold_4 - retained_intron 12691056-12691283 asmbl_41696 // Retained and Spliced Intron # retained_intron 12691444-12691546 (orient:-) max_ev_support = 2 # spliced_intron 12691444-12691546 (orient:-) max_ev_support = 2 scaffold_4 - intron 12691444-12691546 asmbl_41695 scaffold_4 - retained_intron 12691444-12691546 asmbl_41696,asmbl_41697 // Retained and Spliced Intron # retained_intron 13072234-13072389 (orient:-) max_ev_support = 1 # spliced_intron 13072234-13072389 (orient:-) max_ev_support = 2 scaffold_4 - intron 13072234-13072389 asmbl_41709 scaffold_4 - retained_intron 13072234-13072389 asmbl_41710 // Exon Skipping and Retention # skipped_exon 13114475-13115627 (orient:-) max_ev_support = 2 # retained_exon 13114623-13114670 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 13114623-13114670 asmbl_41715,asmbl_41718,asmbl_41719 scaffold_4 - intron_skips_exon 13114475-13115627 asmbl_41716,asmbl_41717 // Retained and Spliced Intron # retained_intron 13183547-13184043 (orient:-) max_ev_support = 1 # spliced_intron 13183547-13184043 (orient:-) max_ev_support = 2 scaffold_4 - intron 13183547-13184043 asmbl_41724,asmbl_41725,asmbl_41726 scaffold_4 - retained_intron 13183547-13184043 asmbl_41727 // Retained and Spliced Intron # retained_intron 13365831-13366046 (orient:-) max_ev_support = 3 # spliced_intron 13365831-13366046 (orient:-) max_ev_support = 2 scaffold_4 - intron 13365831-13366046 asmbl_41736 scaffold_4 - retained_intron 13365831-13366046 asmbl_41735 // Retained and Spliced Intron # retained_intron 13434608-13434816 (orient:-) max_ev_support = 1 # spliced_intron 13434608-13434816 (orient:-) max_ev_support = 2 scaffold_4 - intron 13434608-13434816 asmbl_41742 scaffold_4 - retained_intron 13434608-13434816 asmbl_41743 // Retained and Spliced Intron # retained_intron 13723093-13723242 (orient:-) max_ev_support = 2 # spliced_intron 13723093-13723242 (orient:-) max_ev_support = 1 scaffold_4 - intron 13723093-13723242 asmbl_41747 scaffold_4 - retained_intron 13723093-13723242 asmbl_41745 // Exon Skipping and Retention # skipped_exon 13762275-13763732 (orient:-) max_ev_support = 1 # retained_exon 13762796-13762984 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 13762796-13762984 asmbl_41749 scaffold_4 - intron_skips_exon 13762275-13763732 asmbl_41752 // Retained and Spliced Intron # retained_intron 13762015-13762163 (orient:-) max_ev_support = 1 # spliced_intron 13762015-13762163 (orient:-) max_ev_support = 2 scaffold_4 - intron 13762015-13762163 asmbl_41748,asmbl_41749,asmbl_41750,asmbl_41752 scaffold_4 - retained_intron 13762015-13762163 asmbl_41751 // Retained and Spliced Intron # retained_intron 13762275-13762795 (orient:-) max_ev_support = 1 # spliced_intron 13762275-13762795 (orient:-) max_ev_support = 2 scaffold_4 - intron 13762275-13762795 asmbl_41748,asmbl_41749,asmbl_41750 scaffold_4 - retained_intron 13762275-13762795 asmbl_41751 // Exon Skipping and Retention # skipped_exon 13875672-13876976 (orient:-) max_ev_support = 2 # retained_exon 13876609-13876629 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 13876609-13876629 asmbl_41763 scaffold_4 - intron_skips_exon 13875672-13876976 asmbl_41764 // Retained and Spliced Intron # retained_intron 14115549-14115636 (orient:-) max_ev_support = 1 # spliced_intron 14115549-14115636 (orient:-) max_ev_support = 2 scaffold_4 - intron 14115549-14115636 asmbl_41776 scaffold_4 - retained_intron 14115549-14115636 asmbl_41778 // Exon Skipping and Retention # skipped_exon 14318583-14319063 (orient:-) max_ev_support = 2 # retained_exon 14318900-14318970 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 14318900-14318970 asmbl_41788 scaffold_4 - intron_skips_exon 14318583-14319063 asmbl_41790 // Exon Skipping and Retention # skipped_exon 14318583-14318899 (orient:-) max_ev_support = 2 # retained_exon 14318666-14318790 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 14318666-14318790 asmbl_41789 scaffold_4 - intron_skips_exon 14318583-14318899 asmbl_41788 // Retained and Spliced Intron # retained_intron 14647836-14648056 (orient:-) max_ev_support = 2 # spliced_intron 14647836-14648056 (orient:-) max_ev_support = 2 scaffold_4 - intron 14647836-14648056 asmbl_41808,asmbl_41814 scaffold_4 - retained_intron 14647836-14648056 asmbl_41809,asmbl_41810,asmbl_41813,asmbl_41815,asmbl_41816 // Retained and Spliced Intron # retained_intron 14648132-14648297 (orient:-) max_ev_support = 1 # spliced_intron 14648132-14648297 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648132-14648297 asmbl_41808,asmbl_41809,asmbl_41814,asmbl_41815 scaffold_4 - retained_intron 14648132-14648297 asmbl_41810,asmbl_41813,asmbl_41816 // Retained and Spliced Intron # retained_intron 14648429-14648648 (orient:-) max_ev_support = 1 # spliced_intron 14648429-14648648 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648429-14648648 asmbl_41808,asmbl_41809,asmbl_41813,asmbl_41816 scaffold_4 - retained_intron 14648429-14648648 asmbl_41810,asmbl_41814,asmbl_41815 // Retained and Spliced Intron # retained_intron 14648742-14648884 (orient:-) max_ev_support = 1 # spliced_intron 14648742-14648884 (orient:-) max_ev_support = 2 scaffold_4 - intron 14648742-14648884 asmbl_41808,asmbl_41809,asmbl_41810,asmbl_41813 scaffold_4 - retained_intron 14648742-14648884 asmbl_41814,asmbl_41815,asmbl_41816 // Retained and Spliced Intron # retained_intron 15379460-15379630 (orient:-) max_ev_support = 3 # spliced_intron 15379460-15379630 (orient:-) max_ev_support = 2 scaffold_4 - intron 15379460-15379630 asmbl_41843 scaffold_4 - retained_intron 15379460-15379630 asmbl_41842 // Retained and Spliced Intron # retained_intron 15679041-15679145 (orient:-) max_ev_support = 3 # spliced_intron 15679041-15679145 (orient:-) max_ev_support = 2 scaffold_4 - intron 15679041-15679145 asmbl_41861,asmbl_41862,asmbl_41863 scaffold_4 - retained_intron 15679041-15679145 asmbl_41860 // Exon Skipping and Retention # skipped_exon 15677652-15677958 (orient:-) max_ev_support = 3 # retained_exon 15677765-15677879 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 15677765-15677879 asmbl_41862 scaffold_4 - intron_skips_exon 15677652-15677958 asmbl_41860,asmbl_41861,asmbl_41863 // Retained and Spliced Intron # retained_intron 15678206-15678313 (orient:-) max_ev_support = 1 # spliced_intron 15678206-15678313 (orient:-) max_ev_support = 3 scaffold_4 - intron 15678206-15678313 asmbl_41860,asmbl_41861,asmbl_41862 scaffold_4 - retained_intron 15678206-15678313 asmbl_41863 // Retained and Spliced Intron # retained_intron 15689788-15689823 (orient:-) max_ev_support = 1 # spliced_intron 15689788-15689823 (orient:-) max_ev_support = 1 scaffold_4 - intron 15689788-15689823 asmbl_41866 scaffold_4 - retained_intron 15689788-15689823 asmbl_41865 // Retained and Spliced Intron # retained_intron 15728040-15728147 (orient:-) max_ev_support = 1 # spliced_intron 15728040-15728147 (orient:-) max_ev_support = 2 scaffold_4 - intron 15728040-15728147 asmbl_41869,asmbl_41870 scaffold_4 - retained_intron 15728040-15728147 asmbl_41871,asmbl_41872 // Retained and Spliced Intron # retained_intron 15907621-15907662 (orient:-) max_ev_support = 3 # spliced_intron 15907621-15907662 (orient:-) max_ev_support = 1 scaffold_4 - intron 15907621-15907662 asmbl_41877 scaffold_4 - retained_intron 15907621-15907662 asmbl_41876 // Retained and Spliced Intron # retained_intron 16131996-16133361 (orient:-) max_ev_support = 6 # spliced_intron 16131996-16133361 (orient:-) max_ev_support = 1 scaffold_4 - intron 16131996-16133361 asmbl_41890,asmbl_41893 scaffold_4 - retained_intron 16131996-16133361 asmbl_41889 // Retained and Spliced Intron # retained_intron 16137284-16137576 (orient:-) max_ev_support = 2 # spliced_intron 16137284-16137576 (orient:-) max_ev_support = 2 scaffold_4 - intron 16137284-16137576 asmbl_41892 scaffold_4 - retained_intron 16137284-16137576 asmbl_41890,asmbl_41893 // Retained and Spliced Intron # retained_intron 16311395-16311679 (orient:-) max_ev_support = 1 # spliced_intron 16311395-16311679 (orient:-) max_ev_support = 2 scaffold_4 - intron 16311395-16311679 asmbl_41900,asmbl_41901 scaffold_4 - retained_intron 16311395-16311679 asmbl_41902 // Exon Skipping and Retention # skipped_exon 16370271-16372613 (orient:-) max_ev_support = 1 # retained_exon 16371629-16371682 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16371629-16371682 asmbl_41911 scaffold_4 - intron_skips_exon 16370271-16372613 asmbl_41912 // Exon Skipping and Retention # skipped_exon 16434070-16435033 (orient:-) max_ev_support = 1 # retained_exon 16434731-16434894 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16434731-16434894 asmbl_41919 scaffold_4 - intron_skips_exon 16434070-16435033 asmbl_41920,asmbl_41921 // Exon Skipping and Retention # skipped_exon 16433810-16434730 (orient:-) max_ev_support = 1 # retained_exon 16433906-16434069 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16433906-16434069 asmbl_41920,asmbl_41921 scaffold_4 - intron_skips_exon 16433810-16434730 asmbl_41919 // Retained and Spliced Intron # retained_intron 16480998-16481101 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481101 (orient:-) max_ev_support = 2 scaffold_4 - intron 16480998-16481101 asmbl_41931,asmbl_41933 scaffold_4 - retained_intron 16480998-16481101 asmbl_41928,asmbl_41930 // Retained and Spliced Intron # retained_intron 16480998-16481263 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481263 (orient:-) max_ev_support = 2 scaffold_4 - intron 16480998-16481263 asmbl_41926 scaffold_4 - retained_intron 16480998-16481263 asmbl_41928,asmbl_41930 // Retained and Spliced Intron # retained_intron 16480998-16481293 (orient:-) max_ev_support = 2 # spliced_intron 16480998-16481293 (orient:-) max_ev_support = 2 scaffold_4 - intron 16480998-16481293 asmbl_41927 scaffold_4 - retained_intron 16480998-16481293 asmbl_41928,asmbl_41930 // Retained and Spliced Intron # retained_intron 16481131-16481263 (orient:-) max_ev_support = 2 # spliced_intron 16481131-16481263 (orient:-) max_ev_support = 1 scaffold_4 - intron 16481131-16481263 asmbl_41933 scaffold_4 - retained_intron 16481131-16481263 asmbl_41928,asmbl_41930,asmbl_41931 // Retained and Spliced Intron # retained_intron 16479929-16480208 (orient:-) max_ev_support = 2 # spliced_intron 16479929-16480208 (orient:-) max_ev_support = 2 scaffold_4 - intron 16479929-16480208 asmbl_41926,asmbl_41927,asmbl_41928 scaffold_4 - retained_intron 16479929-16480208 asmbl_41929 // Exon Skipping and Retention # skipped_exon 16480998-16481263 (orient:-) max_ev_support = 2 # retained_exon 16481102-16481130 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16481102-16481130 asmbl_41933 scaffold_4 - intron_skips_exon 16480998-16481263 asmbl_41926 // Exon Skipping and Retention # skipped_exon 16480998-16481293 (orient:-) max_ev_support = 2 # retained_exon 16481102-16481130 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16481102-16481130 asmbl_41933 scaffold_4 - intron_skips_exon 16480998-16481293 asmbl_41927 // Exon Skipping and Retention # skipped_exon 16538973-16540857 (orient:-) max_ev_support = 1 # retained_exon 16540328-16540450 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16540328-16540450 asmbl_41940 scaffold_4 - intron_skips_exon 16538973-16540857 asmbl_41943,asmbl_41944 // Exon Skipping and Retention # skipped_exon 16802675-16804433 (orient:-) max_ev_support = 2 # retained_exon 16802877-16804247 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16802877-16802938,16803054-16803198,16803325-16803439,16803530-16803644,16804081-16804247 asmbl_41964,asmbl_41965 scaffold_4 - intron_skips_exon 16802675-16804433 asmbl_41966 // Exon Skipping and Retention # skipped_exon 16872570-16873884 (orient:-) max_ev_support = 1 # retained_exon 16873536-16873637 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 16873536-16873637 asmbl_41976,asmbl_41978 scaffold_4 - intron_skips_exon 16872570-16873884 asmbl_41979 // Retained and Spliced Intron # retained_intron 16869332-16869415 (orient:-) max_ev_support = 1 # spliced_intron 16869332-16869415 (orient:-) max_ev_support = 2 scaffold_4 - intron 16869332-16869415 asmbl_41976,asmbl_41979,asmbl_41980,asmbl_41981 scaffold_4 - retained_intron 16869332-16869415 asmbl_41978 // Exon Skipping and Retention # skipped_exon 16871896-16873535 (orient:-) max_ev_support = 2 # retained_exon 16872468-16872569 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16872468-16872569 asmbl_41979 scaffold_4 - intron_skips_exon 16871896-16873535 asmbl_41976,asmbl_41978 // Exon Skipping and Retention # skipped_exon 16882986-16884087 (orient:-) max_ev_support = 1 # retained_exon 16883546-16883674 (orient:-) max_ev_support = 3 scaffold_4 - retained_exons 16883546-16883674 asmbl_41983 scaffold_4 - intron_skips_exon 16882986-16884087 asmbl_41984 // Exon Skipping and Retention # skipped_exon 16881837-16883545 (orient:-) max_ev_support = 3 # retained_exon 16882857-16882985 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 16882857-16882985 asmbl_41984 scaffold_4 - intron_skips_exon 16881837-16883545 asmbl_41983 // Retained and Spliced Intron # retained_intron 16932301-16932423 (orient:-) max_ev_support = 1 # spliced_intron 16932301-16932423 (orient:-) max_ev_support = 1 scaffold_4 - intron 16932301-16932423 asmbl_41989 scaffold_4 - retained_intron 16932301-16932423 asmbl_41988 // Retained and Spliced Intron # retained_intron 17121837-17122239 (orient:-) max_ev_support = 3 # spliced_intron 17121837-17122239 (orient:-) max_ev_support = 1 scaffold_4 - intron 17121837-17122239 asmbl_42006 scaffold_4 - retained_intron 17121837-17122239 asmbl_42002,asmbl_42003,asmbl_42004,asmbl_42005 // Exon Skipping and Retention # skipped_exon 17128737-17129758 (orient:-) max_ev_support = 2 # retained_exon 17129029-17129156 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 17129029-17129156 asmbl_42007 scaffold_4 - intron_skips_exon 17128737-17129758 asmbl_42009 // Exon Skipping and Retention # skipped_exon 17129157-17130325 (orient:-) max_ev_support = 2 # retained_exon 17129759-17129886 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 17129759-17129886 asmbl_42009 scaffold_4 - intron_skips_exon 17129157-17130325 asmbl_42007 // Retained and Spliced Intron # retained_intron 17421974-17422122 (orient:-) max_ev_support = 1 # spliced_intron 17421974-17422122 (orient:-) max_ev_support = 1 scaffold_4 - intron 17421974-17422122 asmbl_42012 scaffold_4 - retained_intron 17421974-17422122 asmbl_42011 // Retained and Spliced Intron # retained_intron 17471150-17471253 (orient:-) max_ev_support = 3 # spliced_intron 17471150-17471253 (orient:-) max_ev_support = 3 scaffold_4 - intron 17471150-17471253 asmbl_42017 scaffold_4 - retained_intron 17471150-17471253 asmbl_42018 // Retained and Spliced Intron # retained_intron 17472694-17472804 (orient:-) max_ev_support = 3 # spliced_intron 17472694-17472804 (orient:-) max_ev_support = 2 scaffold_4 - intron 17472694-17472804 asmbl_42020 scaffold_4 - retained_intron 17472694-17472804 asmbl_42019 // Retained and Spliced Intron # retained_intron 17568123-17568235 (orient:-) max_ev_support = 1 # spliced_intron 17568123-17568235 (orient:-) max_ev_support = 1 scaffold_4 - intron 17568123-17568235 asmbl_42034,asmbl_42039 scaffold_4 - retained_intron 17568123-17568235 asmbl_42037 // Retained and Spliced Intron # retained_intron 17568123-17568275 (orient:-) max_ev_support = 1 # spliced_intron 17568123-17568275 (orient:-) max_ev_support = 1 scaffold_4 - intron 17568123-17568275 asmbl_42038,asmbl_42040 scaffold_4 - retained_intron 17568123-17568275 asmbl_42037 // Retained and Spliced Intron # retained_intron 17964335-17964393 (orient:-) max_ev_support = 1 # spliced_intron 17964335-17964393 (orient:-) max_ev_support = 1 scaffold_4 - intron 17964335-17964393 asmbl_42086 scaffold_4 - retained_intron 17964335-17964393 asmbl_42085 // Retained and Spliced Intron # retained_intron 18033877-18033924 (orient:-) max_ev_support = 1 # spliced_intron 18033877-18033924 (orient:-) max_ev_support = 1 scaffold_4 - intron 18033877-18033924 asmbl_42092 scaffold_4 - retained_intron 18033877-18033924 asmbl_42091 // Exon Skipping and Retention # skipped_exon 18529883-18530351 (orient:-) max_ev_support = 1 # retained_exon 18530187-18530230 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 18530187-18530230 asmbl_42130 scaffold_4 - intron_skips_exon 18529883-18530351 asmbl_42129 // Exon Skipping and Retention # skipped_exon 18555116-18558044 (orient:-) max_ev_support = 1 # retained_exon 18557617-18557778 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 18557617-18557778 asmbl_42131,asmbl_42132,asmbl_42134 scaffold_4 - intron_skips_exon 18555116-18558044 asmbl_42133 // Exon Skipping and Retention # skipped_exon 18931654-18932432 (orient:-) max_ev_support = 2 # retained_exon 18931853-18931954 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 18931853-18931954 asmbl_42144 scaffold_4 - intron_skips_exon 18931654-18932432 asmbl_42143 // Exon Skipping and Retention # skipped_exon 19017964-19018075 (orient:-) max_ev_support = 1 # retained_exon 19017988-19018019 (orient:-) max_ev_support = 1 scaffold_4 - retained_exons 19017988-19018019 asmbl_42146 scaffold_4 - intron_skips_exon 19017964-19018075 asmbl_42145 // Retained and Spliced Intron # retained_intron 19017909-19017987 (orient:-) max_ev_support = 1 # spliced_intron 19017909-19017987 (orient:-) max_ev_support = 1 scaffold_4 - intron 19017909-19017987 asmbl_42146 scaffold_4 - retained_intron 19017909-19017987 asmbl_42147 // Retained and Spliced Intron # retained_intron 19274897-19275126 (orient:-) max_ev_support = 1 # spliced_intron 19274897-19275126 (orient:-) max_ev_support = 1 scaffold_4 - intron 19274897-19275126 asmbl_42172 scaffold_4 - retained_intron 19274897-19275126 asmbl_42170,asmbl_42171 // Retained and Spliced Intron # retained_intron 19274656-19274833 (orient:-) max_ev_support = 1 # spliced_intron 19274656-19274833 (orient:-) max_ev_support = 1 scaffold_4 - intron 19274656-19274833 asmbl_42170,asmbl_42172 scaffold_4 - retained_intron 19274656-19274833 asmbl_42171 // Retained and Spliced Intron # retained_intron 19357212-19357317 (orient:-) max_ev_support = 1 # spliced_intron 19357212-19357317 (orient:-) max_ev_support = 1 scaffold_4 - intron 19357212-19357317 asmbl_42187,asmbl_42190 scaffold_4 - retained_intron 19357212-19357317 asmbl_42185,asmbl_42188,asmbl_42189 // Retained and Spliced Intron # retained_intron 19354511-19354584 (orient:-) max_ev_support = 2 # spliced_intron 19354511-19354584 (orient:-) max_ev_support = 2 scaffold_4 - intron 19354511-19354584 asmbl_42185,asmbl_42188,asmbl_42190,asmbl_42191 scaffold_4 - retained_intron 19354511-19354584 asmbl_42186,asmbl_42187,asmbl_42189 // Retained and Spliced Intron # retained_intron 19354741-19354943 (orient:-) max_ev_support = 2 # spliced_intron 19354741-19354943 (orient:-) max_ev_support = 2 scaffold_4 - intron 19354741-19354943 asmbl_42185,asmbl_42187,asmbl_42188,asmbl_42189,asmbl_42190,asmbl_42192 scaffold_4 - retained_intron 19354741-19354943 asmbl_42186,asmbl_42191 // Retained and Spliced Intron # retained_intron 19354316-19354420 (orient:-) max_ev_support = 1 # spliced_intron 19354316-19354420 (orient:-) max_ev_support = 1 scaffold_4 - intron 19354316-19354420 asmbl_42185,asmbl_42188,asmbl_42190 scaffold_4 - retained_intron 19354316-19354420 asmbl_42187,asmbl_42189 // Retained and Spliced Intron # retained_intron 19356141-19356419 (orient:-) max_ev_support = 1 # spliced_intron 19356141-19356419 (orient:-) max_ev_support = 2 scaffold_4 - intron 19356141-19356419 asmbl_42185 scaffold_4 - retained_intron 19356141-19356419 asmbl_42187,asmbl_42188,asmbl_42189,asmbl_42190 // Retained and Spliced Intron # retained_intron 19503268-19503343 (orient:-) max_ev_support = 2 # spliced_intron 19503268-19503343 (orient:-) max_ev_support = 1 scaffold_4 - intron 19503268-19503343 asmbl_42194 scaffold_4 - retained_intron 19503268-19503343 asmbl_42193 // Exon Skipping and Retention # skipped_exon 19524530-19526703 (orient:-) max_ev_support = 1 # retained_exon 19525666-19525696 (orient:-) max_ev_support = 2 scaffold_4 - retained_exons 19525666-19525696 asmbl_42196 scaffold_4 - intron_skips_exon 19524530-19526703 asmbl_42198,asmbl_42199 // Retained and Spliced Intron # retained_intron 19524379-19524448 (orient:-) max_ev_support = 1 # spliced_intron 19524379-19524448 (orient:-) max_ev_support = 2 scaffold_4 - intron 19524379-19524448 asmbl_42196,asmbl_42198 scaffold_4 - retained_intron 19524379-19524448 asmbl_42199 // Retained and Spliced Intron # retained_intron 19539841-19539875 (orient:-) max_ev_support = 3 # spliced_intron 19539841-19539875 (orient:-) max_ev_support = 1 scaffold_4 - intron 19539841-19539875 asmbl_42202 scaffold_4 - retained_intron 19539841-19539875 asmbl_42200 // Retained and Spliced Intron # retained_intron 19539846-19539879 (orient:-) max_ev_support = 3 # spliced_intron 19539846-19539879 (orient:-) max_ev_support = 1 scaffold_4 - intron 19539846-19539879 asmbl_42201 scaffold_4 - retained_intron 19539846-19539879 asmbl_42200 // Retained and Spliced Intron # retained_intron 19591639-19591710 (orient:-) max_ev_support = 1 # spliced_intron 19591639-19591710 (orient:-) max_ev_support = 1 scaffold_4 - intron 19591639-19591710 asmbl_42210 scaffold_4 - retained_intron 19591639-19591710 asmbl_42211 // Retained and Spliced Intron # retained_intron 19591656-19591710 (orient:-) max_ev_support = 1 # spliced_intron 19591656-19591710 (orient:-) max_ev_support = 1 scaffold_4 - intron 19591656-19591710 asmbl_42209 scaffold_4 - retained_intron 19591656-19591710 asmbl_42211 // Retained and Spliced Intron # retained_intron 19604777-19604824 (orient:-) max_ev_support = 1 # spliced_intron 19604777-19604824 (orient:-) max_ev_support = 1 scaffold_4 - intron 19604777-19604824 asmbl_42220 scaffold_4 - retained_intron 19604777-19604824 asmbl_42221 // Retained and Spliced Intron # retained_intron 19605273-19605368 (orient:-) max_ev_support = 1 # spliced_intron 19605273-19605368 (orient:-) max_ev_support = 1 scaffold_4 - intron 19605273-19605368 asmbl_42222 scaffold_4 - retained_intron 19605273-19605368 asmbl_42223 // Retained and Spliced Intron # retained_intron 19674267-19674337 (orient:-) max_ev_support = 1 # spliced_intron 19674267-19674337 (orient:-) max_ev_support = 1 scaffold_4 - intron 19674267-19674337 asmbl_42238 scaffold_4 - retained_intron 19674267-19674337 asmbl_42239 // Retained and Spliced Intron # retained_intron 158350-158690 (orient:+) max_ev_support = 4 # spliced_intron 158350-158690 (orient:+) max_ev_support = 2 scaffold_4 + intron 158350-158690 asmbl_42413 scaffold_4 + retained_intron 158350-158690 asmbl_42412 // Exon Skipping and Retention # skipped_exon 246127-248695 (orient:+) max_ev_support = 1 # retained_exon 247166-247322 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 247166-247322 asmbl_42417 scaffold_4 + intron_skips_exon 246127-248695 asmbl_42418 // Exon Skipping and Retention # skipped_exon 247323-249396 (orient:+) max_ev_support = 1 # retained_exon 248696-248852 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 248696-248852 asmbl_42418 scaffold_4 + intron_skips_exon 247323-249396 asmbl_42417 // Retained and Spliced Intron # retained_intron 1307873-1308003 (orient:+) max_ev_support = 3 # spliced_intron 1307873-1308003 (orient:+) max_ev_support = 2 scaffold_4 + intron 1307873-1308003 asmbl_42430 scaffold_4 + retained_intron 1307873-1308003 asmbl_42429 // Retained and Spliced Intron # retained_intron 1618801-1618830 (orient:+) max_ev_support = 1 # spliced_intron 1618801-1618830 (orient:+) max_ev_support = 1 scaffold_4 + intron 1618801-1618830 asmbl_42442 scaffold_4 + retained_intron 1618801-1618830 asmbl_42443 // Exon Skipping and Retention # skipped_exon 1877027-1879616 (orient:+) max_ev_support = 2 # retained_exon 1877964-1878008 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 1877964-1878008 asmbl_42459 scaffold_4 + intron_skips_exon 1877027-1879616 asmbl_42460 // Retained and Spliced Intron # retained_intron 1969732-1969832 (orient:+) max_ev_support = 2 # spliced_intron 1969732-1969832 (orient:+) max_ev_support = 2 scaffold_4 + intron 1969732-1969832 asmbl_42472 scaffold_4 + retained_intron 1969732-1969832 asmbl_42473,asmbl_42475 // Exon Skipping and Retention # skipped_exon 3340468-3342662 (orient:+) max_ev_support = 1 # retained_exon 3341413-3341484 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 3341413-3341484 asmbl_42505 scaffold_4 + intron_skips_exon 3340468-3342662 asmbl_42506 // Retained and Spliced Intron # retained_intron 3383632-3383773 (orient:+) max_ev_support = 1 # spliced_intron 3383632-3383773 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383632-3383773 asmbl_42514,asmbl_42515,asmbl_42518 scaffold_4 + retained_intron 3383632-3383773 asmbl_42519,asmbl_42520 // Retained and Spliced Intron # retained_intron 3383834-3383996 (orient:+) max_ev_support = 1 # spliced_intron 3383834-3383996 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383834-3383996 asmbl_42515 scaffold_4 + retained_intron 3383834-3383996 asmbl_42521 // Retained and Spliced Intron # retained_intron 3383834-3384084 (orient:+) max_ev_support = 1 # spliced_intron 3383834-3384084 (orient:+) max_ev_support = 2 scaffold_4 + intron 3383834-3384084 asmbl_42514,asmbl_42518,asmbl_42519,asmbl_42520 scaffold_4 + retained_intron 3383834-3384084 asmbl_42521 // Retained and Spliced Intron # retained_intron 4051130-4051203 (orient:+) max_ev_support = 2 # spliced_intron 4051130-4051203 (orient:+) max_ev_support = 3 scaffold_4 + intron 4051130-4051203 asmbl_42536 scaffold_4 + retained_intron 4051130-4051203 asmbl_42537 // Exon Skipping and Retention # skipped_exon 4096133-4096603 (orient:+) max_ev_support = 1 # retained_exon 4096330-4096420 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 4096330-4096420 asmbl_42543,asmbl_42544,asmbl_42545,asmbl_42546,asmbl_42547,asmbl_42553 scaffold_4 + intron_skips_exon 4096133-4096603 asmbl_42552 // Retained and Spliced Intron # retained_intron 4095323-4095811 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095811 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095811 asmbl_42543,asmbl_42547 scaffold_4 + retained_intron 4095323-4095811 asmbl_42546,asmbl_42552,asmbl_42553 // Retained and Spliced Intron # retained_intron 4095323-4095843 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095843 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095843 asmbl_42545 scaffold_4 + retained_intron 4095323-4095843 asmbl_42546,asmbl_42552,asmbl_42553 // Retained and Spliced Intron # retained_intron 4095323-4095985 (orient:+) max_ev_support = 1 # spliced_intron 4095323-4095985 (orient:+) max_ev_support = 2 scaffold_4 + intron 4095323-4095985 asmbl_42544 scaffold_4 + retained_intron 4095323-4095985 asmbl_42546,asmbl_42552,asmbl_42553 // Retained and Spliced Intron # retained_intron 4094067-4094177 (orient:+) max_ev_support = 2 # spliced_intron 4094067-4094177 (orient:+) max_ev_support = 2 scaffold_4 + intron 4094067-4094177 asmbl_42543,asmbl_42544,asmbl_42545,asmbl_42546,asmbl_42554,asmbl_42555 scaffold_4 + retained_intron 4094067-4094177 asmbl_42547,asmbl_42548 // Retained and Spliced Intron # retained_intron 4103311-4103635 (orient:+) max_ev_support = 4 # spliced_intron 4103311-4103635 (orient:+) max_ev_support = 1 scaffold_4 + intron 4103311-4103635 asmbl_42558 scaffold_4 + retained_intron 4103311-4103635 asmbl_42556 // Retained and Spliced Intron # retained_intron 4103343-4103635 (orient:+) max_ev_support = 4 # spliced_intron 4103343-4103635 (orient:+) max_ev_support = 1 scaffold_4 + intron 4103343-4103635 asmbl_42559 scaffold_4 + retained_intron 4103343-4103635 asmbl_42556 // Retained and Spliced Intron # retained_intron 4104440-4104704 (orient:+) max_ev_support = 2 # spliced_intron 4104440-4104704 (orient:+) max_ev_support = 1 scaffold_4 + intron 4104440-4104704 asmbl_42558,asmbl_42559 scaffold_4 + retained_intron 4104440-4104704 asmbl_42556 // Retained and Spliced Intron # retained_intron 4371150-4371554 (orient:+) max_ev_support = 1 # spliced_intron 4371150-4371554 (orient:+) max_ev_support = 2 scaffold_4 + intron 4371150-4371554 asmbl_42566 scaffold_4 + retained_intron 4371150-4371554 asmbl_42568 // Exon Skipping and Retention # skipped_exon 4413750-4415344 (orient:+) max_ev_support = 2 # retained_exon 4414044-4414706 (orient:+) max_ev_support = 4 scaffold_4 + retained_exons 4414044-4414706 asmbl_42571 scaffold_4 + intron_skips_exon 4413750-4415344 asmbl_42580,asmbl_42590 // Retained and Spliced Intron # retained_intron 4414352-4414502 (orient:+) max_ev_support = 2 # spliced_intron 4414352-4414502 (orient:+) max_ev_support = 1 scaffold_4 + intron 4414352-4414502 asmbl_42592 scaffold_4 + retained_intron 4414352-4414502 asmbl_42571,asmbl_42582 // Retained and Spliced Intron # retained_intron 4415761-4416396 (orient:+) max_ev_support = 2 # spliced_intron 4415761-4416396 (orient:+) max_ev_support = 3 scaffold_4 + intron 4415761-4416396 asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42578,asmbl_42580,asmbl_42589,asmbl_42591,asmbl_42593 scaffold_4 + retained_intron 4415761-4416396 asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42585,asmbl_42586,asmbl_42587,asmbl_42588,asmbl_42590 // Retained and Spliced Intron # retained_intron 4416472-4417029 (orient:+) max_ev_support = 2 # spliced_intron 4416472-4417029 (orient:+) max_ev_support = 2 scaffold_4 + intron 4416472-4417029 asmbl_42576,asmbl_42588,asmbl_42589,asmbl_42593 scaffold_4 + retained_intron 4416472-4417029 asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42590 // Retained and Spliced Intron # retained_intron 4416472-4417089 (orient:+) max_ev_support = 2 # spliced_intron 4416472-4417089 (orient:+) max_ev_support = 3 scaffold_4 + intron 4416472-4417089 asmbl_42571,asmbl_42577,asmbl_42580,asmbl_42585,asmbl_42591 scaffold_4 + retained_intron 4416472-4417089 asmbl_42574,asmbl_42575,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42590 // Retained and Spliced Intron # retained_intron 4417120-4417266 (orient:+) max_ev_support = 2 # spliced_intron 4417120-4417266 (orient:+) max_ev_support = 3 scaffold_4 + intron 4417120-4417266 asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42584,asmbl_42586,asmbl_42587,asmbl_42588,asmbl_42589,asmbl_42591 scaffold_4 + retained_intron 4417120-4417266 asmbl_42574,asmbl_42575,asmbl_42590,asmbl_42593 // Retained and Spliced Intron # retained_intron 4417303-4417393 (orient:+) max_ev_support = 2 # spliced_intron 4417303-4417393 (orient:+) max_ev_support = 2 scaffold_4 + intron 4417303-4417393 asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42587,asmbl_42589,asmbl_42591,asmbl_42593 scaffold_4 + retained_intron 4417303-4417393 asmbl_42574,asmbl_42575,asmbl_42584,asmbl_42586,asmbl_42590 // Retained and Spliced Intron # retained_intron 4417425-4417532 (orient:+) max_ev_support = 2 # spliced_intron 4417425-4417532 (orient:+) max_ev_support = 2 scaffold_4 + intron 4417425-4417532 asmbl_42571,asmbl_42576,asmbl_42577,asmbl_42580,asmbl_42583,asmbl_42584,asmbl_42587,asmbl_42589,asmbl_42591,asmbl_42593 scaffold_4 + retained_intron 4417425-4417532 asmbl_42574,asmbl_42575,asmbl_42586,asmbl_42590 // Retained and Spliced Intron # retained_intron 4414707-4415344 (orient:+) max_ev_support = 2 # spliced_intron 4414707-4415344 (orient:+) max_ev_support = 3 scaffold_4 + intron 4414707-4415344 asmbl_42571,asmbl_42574,asmbl_42576,asmbl_42583,asmbl_42585,asmbl_42586 scaffold_4 + retained_intron 4414707-4415344 asmbl_42575,asmbl_42584,asmbl_42587,asmbl_42588 // Retained and Spliced Intron # retained_intron 4414847-4415344 (orient:+) max_ev_support = 2 # spliced_intron 4414847-4415344 (orient:+) max_ev_support = 2 scaffold_4 + intron 4414847-4415344 asmbl_42578 scaffold_4 + retained_intron 4414847-4415344 asmbl_42575,asmbl_42584,asmbl_42587,asmbl_42588 // Retained and Spliced Intron # retained_intron 4413750-4414043 (orient:+) max_ev_support = 1 # spliced_intron 4413750-4414043 (orient:+) max_ev_support = 2 scaffold_4 + intron 4413750-4414043 asmbl_42571,asmbl_42577,asmbl_42589,asmbl_42593 scaffold_4 + retained_intron 4413750-4414043 asmbl_42582,asmbl_42591,asmbl_42592 // Retained and Spliced Intron # retained_intron 4433640-4433862 (orient:+) max_ev_support = 2 # spliced_intron 4433640-4433862 (orient:+) max_ev_support = 2 scaffold_4 + intron 4433640-4433862 asmbl_42598 scaffold_4 + retained_intron 4433640-4433862 asmbl_42599 // Retained and Spliced Intron # retained_intron 4433714-4433862 (orient:+) max_ev_support = 2 # spliced_intron 4433714-4433862 (orient:+) max_ev_support = 1 scaffold_4 + intron 4433714-4433862 asmbl_42601 scaffold_4 + retained_intron 4433714-4433862 asmbl_42599 // Retained and Spliced Intron # retained_intron 4449410-4449595 (orient:+) max_ev_support = 2 # spliced_intron 4449410-4449595 (orient:+) max_ev_support = 3 scaffold_4 + intron 4449410-4449595 asmbl_42604 scaffold_4 + retained_intron 4449410-4449595 asmbl_42605 // Retained and Spliced Intron # retained_intron 4451696-4451771 (orient:+) max_ev_support = 2 # spliced_intron 4451696-4451771 (orient:+) max_ev_support = 1 scaffold_4 + intron 4451696-4451771 asmbl_42609 scaffold_4 + retained_intron 4451696-4451771 asmbl_42606 // Retained and Spliced Intron # retained_intron 4691328-4691558 (orient:+) max_ev_support = 1 # spliced_intron 4691328-4691558 (orient:+) max_ev_support = 2 scaffold_4 + intron 4691328-4691558 asmbl_42627,asmbl_42632,asmbl_42633 scaffold_4 + retained_intron 4691328-4691558 asmbl_42630 // Retained and Spliced Intron # retained_intron 4692582-4692952 (orient:+) max_ev_support = 2 # spliced_intron 4692582-4692952 (orient:+) max_ev_support = 2 scaffold_4 + intron 4692582-4692952 asmbl_42627,asmbl_42630,asmbl_42633 scaffold_4 + retained_intron 4692582-4692952 asmbl_42631 // Retained and Spliced Intron # retained_intron 4691873-4692128 (orient:+) max_ev_support = 1 # spliced_intron 4691873-4692128 (orient:+) max_ev_support = 2 scaffold_4 + intron 4691873-4692128 asmbl_42627,asmbl_42630,asmbl_42633 scaffold_4 + retained_intron 4691873-4692128 asmbl_42632 // Retained and Spliced Intron # retained_intron 4692423-4692526 (orient:+) max_ev_support = 1 # spliced_intron 4692423-4692526 (orient:+) max_ev_support = 2 scaffold_4 + intron 4692423-4692526 asmbl_42627,asmbl_42630,asmbl_42633 scaffold_4 + retained_intron 4692423-4692526 asmbl_42632 // Retained and Spliced Intron # retained_intron 4912273-4912392 (orient:+) max_ev_support = 2 # spliced_intron 4912273-4912392 (orient:+) max_ev_support = 1 scaffold_4 + intron 4912273-4912392 asmbl_42642,asmbl_42646 scaffold_4 + retained_intron 4912273-4912392 asmbl_42641,asmbl_42644,asmbl_42645 // Retained and Spliced Intron # retained_intron 4912509-4913152 (orient:+) max_ev_support = 4 # spliced_intron 4912509-4913152 (orient:+) max_ev_support = 1 scaffold_4 + intron 4912509-4913152 asmbl_42645 scaffold_4 + retained_intron 4912509-4913152 asmbl_42641,asmbl_42642 // Retained and Spliced Intron # retained_intron 4911794-4911995 (orient:+) max_ev_support = 2 # spliced_intron 4911794-4911995 (orient:+) max_ev_support = 2 scaffold_4 + intron 4911794-4911995 asmbl_42641,asmbl_42642,asmbl_42645 scaffold_4 + retained_intron 4911794-4911995 asmbl_42644,asmbl_42646 // Exon Skipping and Retention # skipped_exon 4922110-4923378 (orient:+) max_ev_support = 1 # retained_exon 4922781-4922890 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 4922781-4922890 asmbl_42648,asmbl_42649 scaffold_4 + intron_skips_exon 4922110-4923378 asmbl_42650 // Exon Skipping and Retention # skipped_exon 5677456-5678803 (orient:+) max_ev_support = 2 # retained_exon 5677972-5678066 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 5677972-5678066 asmbl_42695 scaffold_4 + intron_skips_exon 5677456-5678803 asmbl_42694 // Retained and Spliced Intron # retained_intron 5832068-5832537 (orient:+) max_ev_support = 1 # spliced_intron 5832068-5832537 (orient:+) max_ev_support = 1 scaffold_4 + intron 5832068-5832537 asmbl_42702 scaffold_4 + retained_intron 5832068-5832537 asmbl_42701,asmbl_42703 // Retained and Spliced Intron # retained_intron 6247748-6247873 (orient:+) max_ev_support = 2 # spliced_intron 6247748-6247873 (orient:+) max_ev_support = 2 scaffold_4 + intron 6247748-6247873 asmbl_42709 scaffold_4 + retained_intron 6247748-6247873 asmbl_42710,asmbl_42711,asmbl_42712 // Retained and Spliced Intron # retained_intron 6294036-6294226 (orient:+) max_ev_support = 1 # spliced_intron 6294036-6294226 (orient:+) max_ev_support = 2 scaffold_4 + intron 6294036-6294226 asmbl_42716 scaffold_4 + retained_intron 6294036-6294226 asmbl_42717 // Retained and Spliced Intron # retained_intron 6299339-6299408 (orient:+) max_ev_support = 3 # spliced_intron 6299339-6299408 (orient:+) max_ev_support = 2 scaffold_4 + intron 6299339-6299408 asmbl_42721,asmbl_42723,asmbl_42724,asmbl_42725 scaffold_4 + retained_intron 6299339-6299408 asmbl_42718,asmbl_42719,asmbl_42720 // Retained and Spliced Intron # retained_intron 6304956-6305145 (orient:+) max_ev_support = 2 # spliced_intron 6304956-6305145 (orient:+) max_ev_support = 3 scaffold_4 + intron 6304956-6305145 asmbl_42718,asmbl_42721,asmbl_42723,asmbl_42727 scaffold_4 + retained_intron 6304956-6305145 asmbl_42719,asmbl_42720,asmbl_42724,asmbl_42725,asmbl_42726 // Retained and Spliced Intron # retained_intron 6304427-6304811 (orient:+) max_ev_support = 2 # spliced_intron 6304427-6304811 (orient:+) max_ev_support = 3 scaffold_4 + intron 6304427-6304811 asmbl_42718,asmbl_42719,asmbl_42721,asmbl_42723,asmbl_42725,asmbl_42727 scaffold_4 + retained_intron 6304427-6304811 asmbl_42720,asmbl_42724,asmbl_42726 // Retained and Spliced Intron # retained_intron 6303061-6303375 (orient:+) max_ev_support = 2 # spliced_intron 6303061-6303375 (orient:+) max_ev_support = 3 scaffold_4 + intron 6303061-6303375 asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721,asmbl_42723,asmbl_42724,asmbl_42725 scaffold_4 + retained_intron 6303061-6303375 asmbl_42722 // Retained and Spliced Intron # retained_intron 6300650-6300748 (orient:+) max_ev_support = 1 # spliced_intron 6300650-6300748 (orient:+) max_ev_support = 3 scaffold_4 + intron 6300650-6300748 asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721 scaffold_4 + retained_intron 6300650-6300748 asmbl_42723,asmbl_42724,asmbl_42725 // Retained and Spliced Intron # retained_intron 6300842-6302966 (orient:+) max_ev_support = 1 # spliced_intron 6300842-6302966 (orient:+) max_ev_support = 3 scaffold_4 + intron 6300842-6302966 asmbl_42718,asmbl_42719,asmbl_42720,asmbl_42721 scaffold_4 + retained_intron 6300842-6302966 asmbl_42723,asmbl_42724,asmbl_42725 // Retained and Spliced Intron # retained_intron 6332069-6332164 (orient:+) max_ev_support = 3 # spliced_intron 6332069-6332164 (orient:+) max_ev_support = 2 scaffold_4 + intron 6332069-6332164 asmbl_42729 scaffold_4 + retained_intron 6332069-6332164 asmbl_42728 // Exon Skipping and Retention # skipped_exon 6704324-6705681 (orient:+) max_ev_support = 1 # retained_exon 6704806-6705397 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 6704806-6705141,6705271-6705397 asmbl_42752,asmbl_42754 scaffold_4 + intron_skips_exon 6704324-6705681 asmbl_42753 // Exon Skipping and Retention # skipped_exon 6947237-6947567 (orient:+) max_ev_support = 1 # retained_exon 6947400-6947441 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 6947400-6947441 asmbl_42762,asmbl_42767,asmbl_42769,asmbl_42770 scaffold_4 + intron_skips_exon 6947237-6947567 asmbl_42766,asmbl_42771 // Retained and Spliced Intron # retained_intron 6949321-6949391 (orient:+) max_ev_support = 2 # spliced_intron 6949321-6949391 (orient:+) max_ev_support = 2 scaffold_4 + intron 6949321-6949391 asmbl_42762,asmbl_42766,asmbl_42769 scaffold_4 + retained_intron 6949321-6949391 asmbl_42763,asmbl_42764,asmbl_42765,asmbl_42767,asmbl_42770,asmbl_42771 // Exon Skipping and Retention # skipped_exon 7032456-7034797 (orient:+) max_ev_support = 2 # retained_exon 7033834-7033980 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7033834-7033980 asmbl_42783 scaffold_4 + intron_skips_exon 7032456-7034797 asmbl_42781,asmbl_42784 // Retained and Spliced Intron # retained_intron 7090140-7091175 (orient:+) max_ev_support = 2 # spliced_intron 7090140-7091175 (orient:+) max_ev_support = 2 scaffold_4 + intron 7090140-7091175 asmbl_42796 scaffold_4 + retained_intron 7090140-7091175 asmbl_42793,asmbl_42797 // Retained and Spliced Intron # retained_intron 7090983-7091175 (orient:+) max_ev_support = 1 # spliced_intron 7090983-7091175 (orient:+) max_ev_support = 1 scaffold_4 + intron 7090983-7091175 asmbl_42795 scaffold_4 + retained_intron 7090983-7091175 asmbl_42793,asmbl_42797 // Exon Skipping and Retention # skipped_exon 7150686-7151689 (orient:+) max_ev_support = 1 # retained_exon 7150796-7150899 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 7150796-7150899 asmbl_42802,asmbl_42804,asmbl_42805 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_42806,asmbl_42807 // Exon Skipping and Retention # skipped_exon 7150686-7152429 (orient:+) max_ev_support = 1 # retained_exon 7150796-7151997 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 7150796-7150899,7151965-7151997 asmbl_42802,asmbl_42805 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_42807 scaffold_4 + intron_skips_exon 7151794-7152429 asmbl_42807 // Exon Skipping and Retention # skipped_exon 7151104-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 7151965-7151997 asmbl_42802,asmbl_42805,asmbl_42806 scaffold_4 + intron_skips_exon 7151104-7152429 asmbl_42803 // Exon Skipping and Retention # skipped_exon 7150900-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 7151965-7151997 asmbl_42802,asmbl_42805,asmbl_42806 scaffold_4 + intron_skips_exon 7150900-7152429 asmbl_42804 // Exon Skipping and Retention # skipped_exon 7154144-7154943 (orient:+) max_ev_support = 1 # retained_exon 7154530-7154765 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 7154530-7154765 asmbl_42802,asmbl_42803,asmbl_42804,asmbl_42807 scaffold_4 + intron_skips_exon 7154144-7154943 asmbl_42805,asmbl_42806 // Exon Skipping and Retention # skipped_exon 7150686-7151689 (orient:+) max_ev_support = 1 # retained_exon 7150796-7151103 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 7150796-7150899,7151071-7151103 asmbl_42803 scaffold_4 + intron_skips_exon 7150686-7151689 asmbl_42806,asmbl_42807 // Exon Skipping and Retention # skipped_exon 7150900-7151964 (orient:+) max_ev_support = 2 # retained_exon 7151071-7151103 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151071-7151103 asmbl_42803 scaffold_4 + intron_skips_exon 7150900-7151964 asmbl_42802,asmbl_42805 // Exon Skipping and Retention # skipped_exon 7150900-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151071-7151103 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151071-7151103 asmbl_42803 scaffold_4 + intron_skips_exon 7150900-7152429 asmbl_42804 // Exon Skipping and Retention # skipped_exon 7150900-7151964 (orient:+) max_ev_support = 2 # retained_exon 7151690-7151793 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 7151690-7151793 asmbl_42806,asmbl_42807 scaffold_4 + intron_skips_exon 7150900-7151964 asmbl_42802,asmbl_42805 // Exon Skipping and Retention # skipped_exon 7151794-7152429 (orient:+) max_ev_support = 1 # retained_exon 7151965-7151997 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 7151965-7151997 asmbl_42802,asmbl_42805,asmbl_42806 scaffold_4 + intron_skips_exon 7151794-7152429 asmbl_42807 // Retained and Spliced Intron # retained_intron 7267306-7267957 (orient:+) max_ev_support = 3 # spliced_intron 7267306-7267957 (orient:+) max_ev_support = 3 scaffold_4 + intron 7267306-7267957 asmbl_42818,asmbl_42821 scaffold_4 + retained_intron 7267306-7267957 asmbl_42815,asmbl_42820 // Exon Skipping and Retention # skipped_exon 7266733-7267957 (orient:+) max_ev_support = 3 # retained_exon 7267216-7267305 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 7267216-7267305 asmbl_42818,asmbl_42821 scaffold_4 + intron_skips_exon 7266733-7267957 asmbl_42816 // Retained and Spliced Intron # retained_intron 8746476-8746565 (orient:+) max_ev_support = 2 # spliced_intron 8746476-8746565 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746476-8746565 asmbl_42908,asmbl_42910 scaffold_4 + retained_intron 8746476-8746565 asmbl_42907 // Retained and Spliced Intron # retained_intron 8746094-8746165 (orient:+) max_ev_support = 1 # spliced_intron 8746094-8746165 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746094-8746165 asmbl_42909 scaffold_4 + retained_intron 8746094-8746165 asmbl_42908 // Retained and Spliced Intron # retained_intron 8746286-8746309 (orient:+) max_ev_support = 1 # spliced_intron 8746286-8746309 (orient:+) max_ev_support = 1 scaffold_4 + intron 8746286-8746309 asmbl_42908 scaffold_4 + retained_intron 8746286-8746309 asmbl_42910 // Exon Skipping and Retention # skipped_exon 8771059-8771702 (orient:+) max_ev_support = 3 # retained_exon 8771496-8771567 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 8771496-8771567 asmbl_42915 scaffold_4 + intron_skips_exon 8771059-8771702 asmbl_42912,asmbl_42913,asmbl_42914,asmbl_42916 // Retained and Spliced Intron # retained_intron 9254304-9254682 (orient:+) max_ev_support = 1 # spliced_intron 9254304-9254682 (orient:+) max_ev_support = 2 scaffold_4 + intron 9254304-9254682 asmbl_42938 scaffold_4 + retained_intron 9254304-9254682 asmbl_42940 // Retained and Spliced Intron # retained_intron 9998114-9998655 (orient:+) max_ev_support = 3 # spliced_intron 9998114-9998655 (orient:+) max_ev_support = 2 scaffold_4 + intron 9998114-9998655 asmbl_42973,asmbl_42975,asmbl_42976 scaffold_4 + retained_intron 9998114-9998655 asmbl_42972,asmbl_42974 // Exon Skipping and Retention # skipped_exon 10471942-10472461 (orient:+) max_ev_support = 1 # retained_exon 10472211-10472318 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 10472211-10472318 asmbl_42999 scaffold_4 + intron_skips_exon 10471942-10472461 asmbl_43000 // Exon Skipping and Retention # skipped_exon 10855073-10857971 (orient:+) max_ev_support = 1 # retained_exon 10856850-10856930 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 10856850-10856930 asmbl_43007 scaffold_4 + intron_skips_exon 10855073-10857971 asmbl_43009 // Exon Skipping and Retention # skipped_exon 10949549-10950569 (orient:+) max_ev_support = 2 # retained_exon 10949926-10949958 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 10949926-10949958 asmbl_43020 scaffold_4 + intron_skips_exon 10949549-10950569 asmbl_43019 // Retained and Spliced Intron # retained_intron 11075139-11075491 (orient:+) max_ev_support = 3 # spliced_intron 11075139-11075491 (orient:+) max_ev_support = 3 scaffold_4 + intron 11075139-11075491 asmbl_43033 scaffold_4 + retained_intron 11075139-11075491 asmbl_43031 // Retained and Spliced Intron # retained_intron 11075139-11075573 (orient:+) max_ev_support = 3 # spliced_intron 11075139-11075573 (orient:+) max_ev_support = 3 scaffold_4 + intron 11075139-11075573 asmbl_43032 scaffold_4 + retained_intron 11075139-11075573 asmbl_43031 // Retained and Spliced Intron # retained_intron 12457553-12457685 (orient:+) max_ev_support = 1 # spliced_intron 12457553-12457685 (orient:+) max_ev_support = 2 scaffold_4 + intron 12457553-12457685 asmbl_43058 scaffold_4 + retained_intron 12457553-12457685 asmbl_43059 // Retained and Spliced Intron # retained_intron 12711355-12711630 (orient:+) max_ev_support = 3 # spliced_intron 12711355-12711630 (orient:+) max_ev_support = 1 scaffold_4 + intron 12711355-12711630 asmbl_43074 scaffold_4 + retained_intron 12711355-12711630 asmbl_43070 // Exon Skipping and Retention # skipped_exon 12710958-12711630 (orient:+) max_ev_support = 2 # retained_exon 12711343-12711354 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 12711343-12711354 asmbl_43074 scaffold_4 + intron_skips_exon 12710958-12711630 asmbl_43072 // Exon Skipping and Retention # skipped_exon 12727702-12728360 (orient:+) max_ev_support = 2 # retained_exon 12727979-12728062 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 12727979-12728062 asmbl_43076 scaffold_4 + intron_skips_exon 12727702-12728360 asmbl_43075 // Retained and Spliced Intron # retained_intron 13075747-13075881 (orient:+) max_ev_support = 2 # spliced_intron 13075747-13075881 (orient:+) max_ev_support = 1 scaffold_4 + intron 13075747-13075881 asmbl_43112 scaffold_4 + retained_intron 13075747-13075881 asmbl_43108,asmbl_43109,asmbl_43110,asmbl_43111,asmbl_43113,asmbl_43114 // Exon Skipping and Retention # skipped_exon 13076162-13076428 (orient:+) max_ev_support = 1 # retained_exon 13076259-13076299 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 13076259-13076299 asmbl_43108 scaffold_4 + intron_skips_exon 13076162-13076428 asmbl_43111,asmbl_43112 // Exon Skipping and Retention # skipped_exon 13076162-13076345 (orient:+) max_ev_support = 1 # retained_exon 13076259-13076299 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 13076259-13076299 asmbl_43108 scaffold_4 + intron_skips_exon 13076162-13076345 asmbl_43113 // Retained and Spliced Intron # retained_intron 13076283-13076428 (orient:+) max_ev_support = 1 # spliced_intron 13076283-13076428 (orient:+) max_ev_support = 2 scaffold_4 + intron 13076283-13076428 asmbl_43109,asmbl_43114 scaffold_4 + retained_intron 13076283-13076428 asmbl_43110 // Retained and Spliced Intron # retained_intron 13076300-13076428 (orient:+) max_ev_support = 1 # spliced_intron 13076300-13076428 (orient:+) max_ev_support = 2 scaffold_4 + intron 13076300-13076428 asmbl_43108 scaffold_4 + retained_intron 13076300-13076428 asmbl_43110 // Retained and Spliced Intron # retained_intron 13416104-13416213 (orient:+) max_ev_support = 1 # spliced_intron 13416104-13416213 (orient:+) max_ev_support = 2 scaffold_4 + intron 13416104-13416213 asmbl_43121,asmbl_43122,asmbl_43125 scaffold_4 + retained_intron 13416104-13416213 asmbl_43123,asmbl_43124 // Exon Skipping and Retention # skipped_exon 13429773-13431110 (orient:+) max_ev_support = 1 # retained_exon 13430086-13430250 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 13430086-13430250 asmbl_43128,asmbl_43129,asmbl_43130 scaffold_4 + intron_skips_exon 13429773-13431110 asmbl_43127 // Retained and Spliced Intron # retained_intron 13429478-13429669 (orient:+) max_ev_support = 1 # spliced_intron 13429478-13429669 (orient:+) max_ev_support = 1 scaffold_4 + intron 13429478-13429669 asmbl_43127,asmbl_43128,asmbl_43129 scaffold_4 + retained_intron 13429478-13429669 asmbl_43130 // Retained and Spliced Intron # retained_intron 13590208-13590355 (orient:+) max_ev_support = 2 # spliced_intron 13590208-13590355 (orient:+) max_ev_support = 1 scaffold_4 + intron 13590208-13590355 asmbl_43138,asmbl_43139 scaffold_4 + retained_intron 13590208-13590355 asmbl_43136,asmbl_43137,asmbl_43140 // Retained and Spliced Intron # retained_intron 14086400-14086753 (orient:+) max_ev_support = 2 # spliced_intron 14086400-14086753 (orient:+) max_ev_support = 3 scaffold_4 + intron 14086400-14086753 asmbl_43172 scaffold_4 + retained_intron 14086400-14086753 asmbl_43173,asmbl_43174 // Retained and Spliced Intron # retained_intron 14087005-14087119 (orient:+) max_ev_support = 2 # spliced_intron 14087005-14087119 (orient:+) max_ev_support = 3 scaffold_4 + intron 14087005-14087119 asmbl_43172,asmbl_43173 scaffold_4 + retained_intron 14087005-14087119 asmbl_43174 // Retained and Spliced Intron # retained_intron 14618979-14619065 (orient:+) max_ev_support = 1 # spliced_intron 14618979-14619065 (orient:+) max_ev_support = 2 scaffold_4 + intron 14618979-14619065 asmbl_43232 scaffold_4 + retained_intron 14618979-14619065 asmbl_43233 // Retained and Spliced Intron # retained_intron 14618985-14619065 (orient:+) max_ev_support = 1 # spliced_intron 14618985-14619065 (orient:+) max_ev_support = 1 scaffold_4 + intron 14618985-14619065 asmbl_43234 scaffold_4 + retained_intron 14618985-14619065 asmbl_43233 // Exon Skipping and Retention # skipped_exon 14981928-14982524 (orient:+) max_ev_support = 2 # retained_exon 14982184-14982314 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 14982184-14982314 asmbl_43252 scaffold_4 + intron_skips_exon 14981928-14982524 asmbl_43251 // Exon Skipping and Retention # skipped_exon 15007037-15008243 (orient:+) max_ev_support = 2 # retained_exon 15007303-15008130 (orient:+) max_ev_support = 2 scaffold_4 + retained_exons 15007303-15007405,15007707-15007809,15007908-15007981,15008070-15008130 asmbl_43255 scaffold_4 + intron_skips_exon 15007037-15008243 asmbl_43256 // Exon Skipping and Retention # skipped_exon 15355395-15356747 (orient:+) max_ev_support = 2 # retained_exon 15355980-15356012 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 15355980-15356012 asmbl_43281 scaffold_4 + intron_skips_exon 15355395-15356747 asmbl_43279 // Retained and Spliced Intron # retained_intron 16315868-16316019 (orient:+) max_ev_support = 2 # spliced_intron 16315868-16316019 (orient:+) max_ev_support = 2 scaffold_4 + intron 16315868-16316019 asmbl_43299 scaffold_4 + retained_intron 16315868-16316019 asmbl_43300 // Retained and Spliced Intron # retained_intron 16315868-16316024 (orient:+) max_ev_support = 2 # spliced_intron 16315868-16316024 (orient:+) max_ev_support = 3 scaffold_4 + intron 16315868-16316024 asmbl_43297,asmbl_43298 scaffold_4 + retained_intron 16315868-16316024 asmbl_43300 // Retained and Spliced Intron # retained_intron 16577833-16578010 (orient:+) max_ev_support = 2 # spliced_intron 16577833-16578010 (orient:+) max_ev_support = 2 scaffold_4 + intron 16577833-16578010 asmbl_43311,asmbl_43314,asmbl_43315,asmbl_43316 scaffold_4 + retained_intron 16577833-16578010 asmbl_43313,asmbl_43317 // Retained and Spliced Intron # retained_intron 16582373-16582576 (orient:+) max_ev_support = 2 # spliced_intron 16582373-16582576 (orient:+) max_ev_support = 3 scaffold_4 + intron 16582373-16582576 asmbl_43318 scaffold_4 + retained_intron 16582373-16582576 asmbl_43319 // Retained and Spliced Intron # retained_intron 16912206-16912455 (orient:+) max_ev_support = 1 # spliced_intron 16912206-16912455 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912206-16912455 asmbl_43348 scaffold_4 + retained_intron 16912206-16912455 asmbl_43350 // Retained and Spliced Intron # retained_intron 16912206-16912492 (orient:+) max_ev_support = 1 # spliced_intron 16912206-16912492 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912206-16912492 asmbl_43347 scaffold_4 + retained_intron 16912206-16912492 asmbl_43350 // Retained and Spliced Intron # retained_intron 16912391-16912467 (orient:+) max_ev_support = 1 # spliced_intron 16912391-16912467 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912391-16912467 asmbl_43349 scaffold_4 + retained_intron 16912391-16912467 asmbl_43350 // Retained and Spliced Intron # retained_intron 16912391-16912492 (orient:+) max_ev_support = 1 # spliced_intron 16912391-16912492 (orient:+) max_ev_support = 1 scaffold_4 + intron 16912391-16912492 asmbl_43346 scaffold_4 + retained_intron 16912391-16912492 asmbl_43350 // Retained and Spliced Intron # retained_intron 17031495-17031641 (orient:+) max_ev_support = 1 # spliced_intron 17031495-17031641 (orient:+) max_ev_support = 2 scaffold_4 + intron 17031495-17031641 asmbl_43359,asmbl_43360 scaffold_4 + retained_intron 17031495-17031641 asmbl_43364 // Retained and Spliced Intron # retained_intron 17032148-17032361 (orient:+) max_ev_support = 1 # spliced_intron 17032148-17032361 (orient:+) max_ev_support = 2 scaffold_4 + intron 17032148-17032361 asmbl_43359,asmbl_43360 scaffold_4 + retained_intron 17032148-17032361 asmbl_43365 // Retained and Spliced Intron # retained_intron 17115130-17115304 (orient:+) max_ev_support = 1 # spliced_intron 17115130-17115304 (orient:+) max_ev_support = 1 scaffold_4 + intron 17115130-17115304 asmbl_43375 scaffold_4 + retained_intron 17115130-17115304 asmbl_43377 // Retained and Spliced Intron # retained_intron 17537231-17537656 (orient:+) max_ev_support = 2 # spliced_intron 17537231-17537656 (orient:+) max_ev_support = 2 scaffold_4 + intron 17537231-17537656 asmbl_43392 scaffold_4 + retained_intron 17537231-17537656 asmbl_43393 // Exon Skipping and Retention # skipped_exon 17580414-17580979 (orient:+) max_ev_support = 1 # retained_exon 17580545-17580691 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 17580545-17580691 asmbl_43401,asmbl_43404 scaffold_4 + intron_skips_exon 17580414-17580979 asmbl_43402 // Retained and Spliced Intron # retained_intron 17580414-17580544 (orient:+) max_ev_support = 1 # spliced_intron 17580414-17580544 (orient:+) max_ev_support = 1 scaffold_4 + intron 17580414-17580544 asmbl_43401,asmbl_43404,asmbl_43405 scaffold_4 + retained_intron 17580414-17580544 asmbl_43403 // Retained and Spliced Intron # retained_intron 17580414-17580979 (orient:+) max_ev_support = 1 # spliced_intron 17580414-17580979 (orient:+) max_ev_support = 1 scaffold_4 + intron 17580414-17580979 asmbl_43402 scaffold_4 + retained_intron 17580414-17580979 asmbl_43403 // Retained and Spliced Intron # retained_intron 17580692-17580979 (orient:+) max_ev_support = 1 # spliced_intron 17580692-17580979 (orient:+) max_ev_support = 1 scaffold_4 + intron 17580692-17580979 asmbl_43401,asmbl_43404 scaffold_4 + retained_intron 17580692-17580979 asmbl_43403,asmbl_43405 // Retained and Spliced Intron # retained_intron 17622846-17622975 (orient:+) max_ev_support = 2 # spliced_intron 17622846-17622975 (orient:+) max_ev_support = 2 scaffold_4 + intron 17622846-17622975 asmbl_43410 scaffold_4 + retained_intron 17622846-17622975 asmbl_43409 // Retained and Spliced Intron # retained_intron 17805603-17805997 (orient:+) max_ev_support = 1 # spliced_intron 17805603-17805997 (orient:+) max_ev_support = 1 scaffold_4 + intron 17805603-17805997 asmbl_43414,asmbl_43418 scaffold_4 + retained_intron 17805603-17805997 asmbl_43416 // Retained and Spliced Intron # retained_intron 17805603-17806025 (orient:+) max_ev_support = 1 # spliced_intron 17805603-17806025 (orient:+) max_ev_support = 1 scaffold_4 + intron 17805603-17806025 asmbl_43417 scaffold_4 + retained_intron 17805603-17806025 asmbl_43416 // Retained and Spliced Intron # retained_intron 18282392-18282451 (orient:+) max_ev_support = 3 # spliced_intron 18282392-18282451 (orient:+) max_ev_support = 1 scaffold_4 + intron 18282392-18282451 asmbl_43428 scaffold_4 + retained_intron 18282392-18282451 asmbl_43427 // Retained and Spliced Intron # retained_intron 18288544-18288639 (orient:+) max_ev_support = 1 # spliced_intron 18288544-18288639 (orient:+) max_ev_support = 1 scaffold_4 + intron 18288544-18288639 asmbl_43433 scaffold_4 + retained_intron 18288544-18288639 asmbl_43432 // Retained and Spliced Intron # retained_intron 18296094-18296125 (orient:+) max_ev_support = 3 # spliced_intron 18296094-18296125 (orient:+) max_ev_support = 1 scaffold_4 + intron 18296094-18296125 asmbl_43442 scaffold_4 + retained_intron 18296094-18296125 asmbl_43440,asmbl_43441 // Retained and Spliced Intron # retained_intron 18296287-18296326 (orient:+) max_ev_support = 3 # spliced_intron 18296287-18296326 (orient:+) max_ev_support = 1 scaffold_4 + intron 18296287-18296326 asmbl_43441 scaffold_4 + retained_intron 18296287-18296326 asmbl_43440,asmbl_43442 // Retained and Spliced Intron # retained_intron 18348146-18348526 (orient:+) max_ev_support = 1 # spliced_intron 18348146-18348526 (orient:+) max_ev_support = 2 scaffold_4 + intron 18348146-18348526 asmbl_43444 scaffold_4 + retained_intron 18348146-18348526 asmbl_43446 // Retained and Spliced Intron # retained_intron 19128360-19128385 (orient:+) max_ev_support = 1 # spliced_intron 19128360-19128385 (orient:+) max_ev_support = 2 scaffold_4 + intron 19128360-19128385 asmbl_43468 scaffold_4 + retained_intron 19128360-19128385 asmbl_43469 // Retained and Spliced Intron # retained_intron 19141911-19141983 (orient:+) max_ev_support = 1 # spliced_intron 19141911-19141983 (orient:+) max_ev_support = 2 scaffold_4 + intron 19141911-19141983 asmbl_43470 scaffold_4 + retained_intron 19141911-19141983 asmbl_43471 // Exon Skipping and Retention # skipped_exon 19371845-19374246 (orient:+) max_ev_support = 1 # retained_exon 19372029-19372090 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 19372029-19372090 asmbl_43481,asmbl_43483 scaffold_4 + intron_skips_exon 19371845-19374246 asmbl_43482 // Retained and Spliced Intron # retained_intron 19379192-19379340 (orient:+) max_ev_support = 1 # spliced_intron 19379192-19379340 (orient:+) max_ev_support = 2 scaffold_4 + intron 19379192-19379340 asmbl_43482,asmbl_43483,asmbl_43485 scaffold_4 + retained_intron 19379192-19379340 asmbl_43481 // Exon Skipping and Retention # skipped_exon 19443462-19444949 (orient:+) max_ev_support = 1 # retained_exon 19443661-19444835 (orient:+) max_ev_support = 1 scaffold_4 + retained_exons 19443661-19443913,19444618-19444835 asmbl_43492 scaffold_4 + intron_skips_exon 19443462-19444949 asmbl_43493 // Exon Skipping and Retention # skipped_exon 19679866-19680199 (orient:+) max_ev_support = 3 # retained_exon 19679973-19680110 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 19679973-19680110 asmbl_43500,asmbl_43502 scaffold_4 + intron_skips_exon 19679866-19680199 asmbl_43501 // Exon Skipping and Retention # skipped_exon 19752549-19753056 (orient:+) max_ev_support = 3 # retained_exon 19752814-19752930 (orient:+) max_ev_support = 3 scaffold_4 + retained_exons 19752814-19752930 asmbl_43506 scaffold_4 + intron_skips_exon 19752549-19753056 asmbl_43505,asmbl_43507 // Retained and Spliced Intron # retained_intron 19753353-19753666 (orient:+) max_ev_support = 3 # spliced_intron 19753353-19753666 (orient:+) max_ev_support = 3 scaffold_4 + intron 19753353-19753666 asmbl_43505,asmbl_43506 scaffold_4 + retained_intron 19753353-19753666 asmbl_43507 // Retained and Spliced Intron # retained_intron 26688-26808 (orient:+) max_ev_support = 3 # spliced_intron 26688-26808 (orient:+) max_ev_support = 1 scaffold_40 + intron 26688-26808 asmbl_43643 scaffold_40 + retained_intron 26688-26808 asmbl_43642 // Retained and Spliced Intron # retained_intron 782-922 (orient:-) max_ev_support = 1 # spliced_intron 782-922 (orient:-) max_ev_support = 1 scaffold_43 - intron 782-922 asmbl_43672 scaffold_43 - retained_intron 782-922 asmbl_43670 // Retained and Spliced Intron # retained_intron 829-875 (orient:-) max_ev_support = 1 # spliced_intron 829-875 (orient:-) max_ev_support = 1 scaffold_43 - intron 829-875 asmbl_43671 scaffold_43 - retained_intron 829-875 asmbl_43670 // Retained and Spliced Intron # retained_intron 829-922 (orient:-) max_ev_support = 1 # spliced_intron 829-922 (orient:-) max_ev_support = 1 scaffold_43 - intron 829-922 asmbl_43673,asmbl_43674 scaffold_43 - retained_intron 829-922 asmbl_43670 // Retained and Spliced Intron # retained_intron 547-687 (orient:-) max_ev_support = 1 # spliced_intron 547-687 (orient:-) max_ev_support = 1 scaffold_43 - intron 547-687 asmbl_43670,asmbl_43671,asmbl_43672,asmbl_43673 scaffold_43 - retained_intron 547-687 asmbl_43674 // Retained and Spliced Intron # retained_intron 4666-4794 (orient:-) max_ev_support = 1 # spliced_intron 4666-4794 (orient:-) max_ev_support = 1 scaffold_433 - intron 4666-4794 asmbl_43678 scaffold_433 - retained_intron 4666-4794 asmbl_43677 // Exon Skipping and Retention # skipped_exon 5026-6422 (orient:+) max_ev_support = 2 # retained_exon 5601-5738 (orient:+) max_ev_support = 2 scaffold_446 + retained_exons 5601-5738 asmbl_43693 scaffold_446 + intron_skips_exon 5026-6422 asmbl_43694 // Retained and Spliced Intron # retained_intron 3524-3609 (orient:+) max_ev_support = 2 # spliced_intron 3524-3609 (orient:+) max_ev_support = 1 scaffold_464 + intron 3524-3609 asmbl_43703 scaffold_464 + retained_intron 3524-3609 asmbl_43702 // Retained and Spliced Intron # retained_intron 68119-68377 (orient:+) max_ev_support = 5 # spliced_intron 68119-68377 (orient:+) max_ev_support = 1 scaffold_5 + intron 68119-68377 asmbl_43734 scaffold_5 + retained_intron 68119-68377 asmbl_43733 // Retained and Spliced Intron # retained_intron 188214-188267 (orient:+) max_ev_support = 1 # spliced_intron 188214-188267 (orient:+) max_ev_support = 1 scaffold_5 + intron 188214-188267 asmbl_43750,asmbl_43751 scaffold_5 + retained_intron 188214-188267 asmbl_43748,asmbl_43749 // Retained and Spliced Intron # retained_intron 188746-188784 (orient:+) max_ev_support = 1 # spliced_intron 188746-188784 (orient:+) max_ev_support = 1 scaffold_5 + intron 188746-188784 asmbl_43750 scaffold_5 + retained_intron 188746-188784 asmbl_43748,asmbl_43749,asmbl_43751 // Retained and Spliced Intron # retained_intron 189801-189832 (orient:+) max_ev_support = 4 # spliced_intron 189801-189832 (orient:+) max_ev_support = 1 scaffold_5 + intron 189801-189832 asmbl_43749,asmbl_43750,asmbl_43751 scaffold_5 + retained_intron 189801-189832 asmbl_43748 // Retained and Spliced Intron # retained_intron 189945-189976 (orient:+) max_ev_support = 5 # spliced_intron 189945-189976 (orient:+) max_ev_support = 1 scaffold_5 + intron 189945-189976 asmbl_43751 scaffold_5 + retained_intron 189945-189976 asmbl_43748,asmbl_43749,asmbl_43750 // Retained and Spliced Intron # retained_intron 233770-233796 (orient:+) max_ev_support = 1 # spliced_intron 233770-233796 (orient:+) max_ev_support = 1 scaffold_5 + intron 233770-233796 asmbl_43753 scaffold_5 + retained_intron 233770-233796 asmbl_43754 // Exon Skipping and Retention # skipped_exon 821102-823496 (orient:+) max_ev_support = 1 # retained_exon 821479-821971 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 821479-821635,821782-821971 asmbl_43765,asmbl_43766 scaffold_5 + intron_skips_exon 821102-823496 asmbl_43767 // Exon Skipping and Retention # skipped_exon 823617-825278 (orient:+) max_ev_support = 1 # retained_exon 824518-824592 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 824518-824592 asmbl_43766 scaffold_5 + intron_skips_exon 823617-825278 asmbl_43765,asmbl_43767 // Exon Skipping and Retention # skipped_exon 992901-994296 (orient:+) max_ev_support = 1 # retained_exon 993797-993872 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 993797-993872 asmbl_43771,asmbl_43772 scaffold_5 + intron_skips_exon 992901-994296 asmbl_43773 // Exon Skipping and Retention # skipped_exon 992426-993796 (orient:+) max_ev_support = 2 # retained_exon 992825-992900 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 992825-992900 asmbl_43773 scaffold_5 + intron_skips_exon 992426-993796 asmbl_43771,asmbl_43772 // Retained and Spliced Intron # retained_intron 1162909-1162938 (orient:+) max_ev_support = 1 # spliced_intron 1162909-1162938 (orient:+) max_ev_support = 1 scaffold_5 + intron 1162909-1162938 asmbl_43780 scaffold_5 + retained_intron 1162909-1162938 asmbl_43779 // Retained and Spliced Intron # retained_intron 2400901-2400920 (orient:+) max_ev_support = 2 # spliced_intron 2400901-2400920 (orient:+) max_ev_support = 1 scaffold_5 + intron 2400901-2400920 asmbl_43831 scaffold_5 + retained_intron 2400901-2400920 asmbl_43830 // Retained and Spliced Intron # retained_intron 2536271-2536536 (orient:+) max_ev_support = 2 # spliced_intron 2536271-2536536 (orient:+) max_ev_support = 1 scaffold_5 + intron 2536271-2536536 asmbl_43839,asmbl_43840 scaffold_5 + retained_intron 2536271-2536536 asmbl_43837 // Retained and Spliced Intron # retained_intron 2536271-2536552 (orient:+) max_ev_support = 2 # spliced_intron 2536271-2536552 (orient:+) max_ev_support = 2 scaffold_5 + intron 2536271-2536552 asmbl_43836,asmbl_43838 scaffold_5 + retained_intron 2536271-2536552 asmbl_43837 // Exon Skipping and Retention # skipped_exon 2608393-2611347 (orient:+) max_ev_support = 1 # retained_exon 2608955-2608996 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 2608955-2608996 asmbl_43853 scaffold_5 + intron_skips_exon 2608393-2611347 asmbl_43855 // Retained and Spliced Intron # retained_intron 3630484-3630505 (orient:+) max_ev_support = 1 # spliced_intron 3630484-3630505 (orient:+) max_ev_support = 1 scaffold_5 + intron 3630484-3630505 asmbl_43894,asmbl_43895 scaffold_5 + retained_intron 3630484-3630505 asmbl_43893 // Exon Skipping and Retention # skipped_exon 3772202-3774132 (orient:+) max_ev_support = 1 # retained_exon 3772855-3773188 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 3772855-3773188 asmbl_43901 scaffold_5 + intron_skips_exon 3772202-3774132 asmbl_43903 // Retained and Spliced Intron # retained_intron 3935675-3935871 (orient:+) max_ev_support = 3 # spliced_intron 3935675-3935871 (orient:+) max_ev_support = 1 scaffold_5 + intron 3935675-3935871 asmbl_43925 scaffold_5 + retained_intron 3935675-3935871 asmbl_43924 // Retained and Spliced Intron # retained_intron 3935999-3936105 (orient:+) max_ev_support = 3 # spliced_intron 3935999-3936105 (orient:+) max_ev_support = 1 scaffold_5 + intron 3935999-3936105 asmbl_43925 scaffold_5 + retained_intron 3935999-3936105 asmbl_43924 // Retained and Spliced Intron # retained_intron 4696342-4696551 (orient:+) max_ev_support = 1 # spliced_intron 4696342-4696551 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696342-4696551 asmbl_43949 scaffold_5 + retained_intron 4696342-4696551 asmbl_43951 // Retained and Spliced Intron # retained_intron 4696342-4696593 (orient:+) max_ev_support = 1 # spliced_intron 4696342-4696593 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696342-4696593 asmbl_43948 scaffold_5 + retained_intron 4696342-4696593 asmbl_43951 // Retained and Spliced Intron # retained_intron 4696384-4696509 (orient:+) max_ev_support = 1 # spliced_intron 4696384-4696509 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696384-4696509 asmbl_43950 scaffold_5 + retained_intron 4696384-4696509 asmbl_43951 // Retained and Spliced Intron # retained_intron 4696426-4696467 (orient:+) max_ev_support = 1 # spliced_intron 4696426-4696467 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696426-4696467 asmbl_43952 scaffold_5 + retained_intron 4696426-4696467 asmbl_43951 // Retained and Spliced Intron # retained_intron 4696426-4696551 (orient:+) max_ev_support = 1 # spliced_intron 4696426-4696551 (orient:+) max_ev_support = 1 scaffold_5 + intron 4696426-4696551 asmbl_43954 scaffold_5 + retained_intron 4696426-4696551 asmbl_43951 // Retained and Spliced Intron # retained_intron 4754616-4754915 (orient:+) max_ev_support = 1 # spliced_intron 4754616-4754915 (orient:+) max_ev_support = 2 scaffold_5 + intron 4754616-4754915 asmbl_43960 scaffold_5 + retained_intron 4754616-4754915 asmbl_43961 // Retained and Spliced Intron # retained_intron 4865673-4866834 (orient:+) max_ev_support = 3 # spliced_intron 4865673-4866834 (orient:+) max_ev_support = 2 scaffold_5 + intron 4865673-4866834 asmbl_43976 scaffold_5 + retained_intron 4865673-4866834 asmbl_43973,asmbl_43974 // Retained and Spliced Intron # retained_intron 4866436-4866834 (orient:+) max_ev_support = 2 # spliced_intron 4866436-4866834 (orient:+) max_ev_support = 1 scaffold_5 + intron 4866436-4866834 asmbl_43975 scaffold_5 + retained_intron 4866436-4866834 asmbl_43973,asmbl_43974 // Retained and Spliced Intron # retained_intron 4866969-4867162 (orient:+) max_ev_support = 2 # spliced_intron 4866969-4867162 (orient:+) max_ev_support = 2 scaffold_5 + intron 4866969-4867162 asmbl_43973,asmbl_43975,asmbl_43976 scaffold_5 + retained_intron 4866969-4867162 asmbl_43974 // Retained and Spliced Intron # retained_intron 4948779-4949120 (orient:+) max_ev_support = 1 # spliced_intron 4948779-4949120 (orient:+) max_ev_support = 2 scaffold_5 + intron 4948779-4949120 asmbl_43984 scaffold_5 + retained_intron 4948779-4949120 asmbl_43983,asmbl_43985 // Retained and Spliced Intron # retained_intron 4948983-4949120 (orient:+) max_ev_support = 1 # spliced_intron 4948983-4949120 (orient:+) max_ev_support = 1 scaffold_5 + intron 4948983-4949120 asmbl_43986 scaffold_5 + retained_intron 4948983-4949120 asmbl_43983,asmbl_43985 // Retained and Spliced Intron # retained_intron 4949952-4950472 (orient:+) max_ev_support = 3 # spliced_intron 4949952-4950472 (orient:+) max_ev_support = 2 scaffold_5 + intron 4949952-4950472 asmbl_43984,asmbl_43985,asmbl_43986 scaffold_5 + retained_intron 4949952-4950472 asmbl_43983 // Retained and Spliced Intron # retained_intron 5045141-5045218 (orient:+) max_ev_support = 2 # spliced_intron 5045141-5045218 (orient:+) max_ev_support = 1 scaffold_5 + intron 5045141-5045218 asmbl_43995 scaffold_5 + retained_intron 5045141-5045218 asmbl_43993 // Retained and Spliced Intron # retained_intron 5045141-5045424 (orient:+) max_ev_support = 2 # spliced_intron 5045141-5045424 (orient:+) max_ev_support = 2 scaffold_5 + intron 5045141-5045424 asmbl_43994 scaffold_5 + retained_intron 5045141-5045424 asmbl_43993 // Retained and Spliced Intron # retained_intron 5045141-5046460 (orient:+) max_ev_support = 3 # spliced_intron 5045141-5046460 (orient:+) max_ev_support = 2 scaffold_5 + intron 5045141-5046460 asmbl_43991 scaffold_5 + retained_intron 5045141-5046460 asmbl_43993 // Exon Skipping and Retention # skipped_exon 5046593-5047832 (orient:+) max_ev_support = 2 # retained_exon 5047196-5047310 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 5047196-5047310 asmbl_43994 scaffold_5 + intron_skips_exon 5046593-5047832 asmbl_43991 // Retained and Spliced Intron # retained_intron 5046593-5047195 (orient:+) max_ev_support = 1 # spliced_intron 5046593-5047195 (orient:+) max_ev_support = 1 scaffold_5 + intron 5046593-5047195 asmbl_43993,asmbl_43994,asmbl_43995 scaffold_5 + retained_intron 5046593-5047195 asmbl_43998 // Exon Skipping and Retention # skipped_exon 5051252-5053991 (orient:+) max_ev_support = 2 # retained_exon 5051789-5051848 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 5051789-5051848 asmbl_43999 scaffold_5 + intron_skips_exon 5051252-5053991 asmbl_44000,asmbl_44002,asmbl_44003 // Retained and Spliced Intron # retained_intron 5060700-5061166 (orient:+) max_ev_support = 2 # spliced_intron 5060700-5061166 (orient:+) max_ev_support = 2 scaffold_5 + intron 5060700-5061166 asmbl_44006 scaffold_5 + retained_intron 5060700-5061166 asmbl_44005 // Retained and Spliced Intron # retained_intron 5061259-5061405 (orient:+) max_ev_support = 2 # spliced_intron 5061259-5061405 (orient:+) max_ev_support = 2 scaffold_5 + intron 5061259-5061405 asmbl_44006,asmbl_44007 scaffold_5 + retained_intron 5061259-5061405 asmbl_44005 // Retained and Spliced Intron # retained_intron 5061484-5061828 (orient:+) max_ev_support = 2 # spliced_intron 5061484-5061828 (orient:+) max_ev_support = 2 scaffold_5 + intron 5061484-5061828 asmbl_44006 scaffold_5 + retained_intron 5061484-5061828 asmbl_44005,asmbl_44007 // Retained and Spliced Intron # retained_intron 5061929-5062040 (orient:+) max_ev_support = 2 # spliced_intron 5061929-5062040 (orient:+) max_ev_support = 2 scaffold_5 + intron 5061929-5062040 asmbl_44006 scaffold_5 + retained_intron 5061929-5062040 asmbl_44005,asmbl_44007 // Retained and Spliced Intron # retained_intron 5608890-5608962 (orient:+) max_ev_support = 2 # spliced_intron 5608890-5608962 (orient:+) max_ev_support = 1 scaffold_5 + intron 5608890-5608962 asmbl_44018,asmbl_44019 scaffold_5 + retained_intron 5608890-5608962 asmbl_44017 // Exon Skipping and Retention # skipped_exon 5608152-5608962 (orient:+) max_ev_support = 2 # retained_exon 5608356-5608889 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 5608356-5608889 asmbl_44018 scaffold_5 + intron_skips_exon 5608152-5608962 asmbl_44016 // Exon Skipping and Retention # skipped_exon 5737985-5739761 (orient:+) max_ev_support = 2 # retained_exon 5738079-5738649 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 5738079-5738214,5738535-5738649 asmbl_44027 scaffold_5 + intron_skips_exon 5737985-5739761 asmbl_44025 // Exon Skipping and Retention # skipped_exon 5738210-5739761 (orient:+) max_ev_support = 1 # retained_exon 5738535-5738649 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 5738535-5738649 asmbl_44027 scaffold_5 + intron_skips_exon 5738210-5739761 asmbl_44029 // Retained and Spliced Intron # retained_intron 5738215-5738534 (orient:+) max_ev_support = 2 # spliced_intron 5738215-5738534 (orient:+) max_ev_support = 1 scaffold_5 + intron 5738215-5738534 asmbl_44027 scaffold_5 + retained_intron 5738215-5738534 asmbl_44028,asmbl_44030 // Retained and Spliced Intron # retained_intron 5754426-5756080 (orient:+) max_ev_support = 1 # spliced_intron 5754426-5756080 (orient:+) max_ev_support = 2 scaffold_5 + intron 5754426-5756080 asmbl_44033 scaffold_5 + retained_intron 5754426-5756080 asmbl_44034,asmbl_44035 // Retained and Spliced Intron # retained_intron 5972142-5972548 (orient:+) max_ev_support = 1 # spliced_intron 5972142-5972548 (orient:+) max_ev_support = 1 scaffold_5 + intron 5972142-5972548 asmbl_44046 scaffold_5 + retained_intron 5972142-5972548 asmbl_44044 // Retained and Spliced Intron # retained_intron 5972401-5972548 (orient:+) max_ev_support = 1 # spliced_intron 5972401-5972548 (orient:+) max_ev_support = 1 scaffold_5 + intron 5972401-5972548 asmbl_44045 scaffold_5 + retained_intron 5972401-5972548 asmbl_44044 // Retained and Spliced Intron # retained_intron 6010030-6010122 (orient:+) max_ev_support = 1 # spliced_intron 6010030-6010122 (orient:+) max_ev_support = 3 scaffold_5 + intron 6010030-6010122 asmbl_44051 scaffold_5 + retained_intron 6010030-6010122 asmbl_44052 // Exon Skipping and Retention # skipped_exon 6064631-6065158 (orient:+) max_ev_support = 1 # retained_exon 6064795-6064853 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6064795-6064853 asmbl_44058,asmbl_44059 scaffold_5 + intron_skips_exon 6064631-6065158 asmbl_44062 // Exon Skipping and Retention # skipped_exon 6064854-6065937 (orient:+) max_ev_support = 2 # retained_exon 6065159-6065217 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6065159-6065217 asmbl_44058,asmbl_44062 scaffold_5 + intron_skips_exon 6064854-6065937 asmbl_44059 // Exon Skipping and Retention # skipped_exon 6289314-6290164 (orient:+) max_ev_support = 1 # retained_exon 6289561-6289649 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6289561-6289649 asmbl_44079 scaffold_5 + intron_skips_exon 6289314-6290164 asmbl_44080 // Exon Skipping and Retention # skipped_exon 6289083-6289560 (orient:+) max_ev_support = 2 # retained_exon 6289221-6289313 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 6289221-6289313 asmbl_44080 scaffold_5 + intron_skips_exon 6289083-6289560 asmbl_44079,asmbl_44081 // Exon Skipping and Retention # skipped_exon 6564452-6567257 (orient:+) max_ev_support = 3 # retained_exon 6564990-6565036 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 6564990-6565036 asmbl_44102 scaffold_5 + intron_skips_exon 6564452-6567257 asmbl_44094 // Retained and Spliced Intron # retained_intron 6658604-6658738 (orient:+) max_ev_support = 2 # spliced_intron 6658604-6658738 (orient:+) max_ev_support = 1 scaffold_5 + intron 6658604-6658738 asmbl_44105 scaffold_5 + retained_intron 6658604-6658738 asmbl_44104 // Exon Skipping and Retention # skipped_exon 6716069-6718508 (orient:+) max_ev_support = 3 # retained_exon 6717952-6718042 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 6717952-6718042 asmbl_44108 scaffold_5 + intron_skips_exon 6716069-6718508 asmbl_44107 // Retained and Spliced Intron # retained_intron 6734217-6734431 (orient:+) max_ev_support = 2 # spliced_intron 6734217-6734431 (orient:+) max_ev_support = 2 scaffold_5 + intron 6734217-6734431 asmbl_44110 scaffold_5 + retained_intron 6734217-6734431 asmbl_44111,asmbl_44112 // Retained and Spliced Intron # retained_intron 6847775-6848001 (orient:+) max_ev_support = 1 # spliced_intron 6847775-6848001 (orient:+) max_ev_support = 2 scaffold_5 + intron 6847775-6848001 asmbl_44113 scaffold_5 + retained_intron 6847775-6848001 asmbl_44115 // Retained and Spliced Intron # retained_intron 6933179-6933389 (orient:+) max_ev_support = 1 # spliced_intron 6933179-6933389 (orient:+) max_ev_support = 2 scaffold_5 + intron 6933179-6933389 asmbl_44126 scaffold_5 + retained_intron 6933179-6933389 asmbl_44128 // Retained and Spliced Intron # retained_intron 6933262-6933389 (orient:+) max_ev_support = 1 # spliced_intron 6933262-6933389 (orient:+) max_ev_support = 1 scaffold_5 + intron 6933262-6933389 asmbl_44129 scaffold_5 + retained_intron 6933262-6933389 asmbl_44128 // Exon Skipping and Retention # skipped_exon 7029956-7031130 (orient:+) max_ev_support = 2 # retained_exon 7030345-7030432 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 7030345-7030432 asmbl_44135,asmbl_44136,asmbl_44137,asmbl_44140 scaffold_5 + intron_skips_exon 7029956-7031130 asmbl_44138,asmbl_44139 // Retained and Spliced Intron # retained_intron 7320374-7320425 (orient:+) max_ev_support = 1 # spliced_intron 7320374-7320425 (orient:+) max_ev_support = 1 scaffold_5 + intron 7320374-7320425 asmbl_44155 scaffold_5 + retained_intron 7320374-7320425 asmbl_44152,asmbl_44154 // Retained and Spliced Intron # retained_intron 7320452-7320503 (orient:+) max_ev_support = 1 # spliced_intron 7320452-7320503 (orient:+) max_ev_support = 1 scaffold_5 + intron 7320452-7320503 asmbl_44152,asmbl_44154 scaffold_5 + retained_intron 7320452-7320503 asmbl_44155 // Retained and Spliced Intron # retained_intron 7708243-7708325 (orient:+) max_ev_support = 2 # spliced_intron 7708243-7708325 (orient:+) max_ev_support = 2 scaffold_5 + intron 7708243-7708325 asmbl_44163 scaffold_5 + retained_intron 7708243-7708325 asmbl_44162,asmbl_44164,asmbl_44165 // Retained and Spliced Intron # retained_intron 7707898-7707967 (orient:+) max_ev_support = 1 # spliced_intron 7707898-7707967 (orient:+) max_ev_support = 2 scaffold_5 + intron 7707898-7707967 asmbl_44162,asmbl_44165 scaffold_5 + retained_intron 7707898-7707967 asmbl_44164 // Exon Skipping and Retention # skipped_exon 7708375-7708743 (orient:+) max_ev_support = 2 # retained_exon 7708535-7708630 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 7708535-7708630 asmbl_44165 scaffold_5 + intron_skips_exon 7708375-7708743 asmbl_44162,asmbl_44163,asmbl_44164 // Exon Skipping and Retention # skipped_exon 7740584-7741185 (orient:+) max_ev_support = 1 # retained_exon 7740676-7740966 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 7740676-7740747,7740866-7740966 asmbl_44167,asmbl_44168 scaffold_5 + intron_skips_exon 7740584-7741185 asmbl_44169 // Retained and Spliced Intron # retained_intron 7770850-7770942 (orient:+) max_ev_support = 1 # spliced_intron 7770850-7770942 (orient:+) max_ev_support = 1 scaffold_5 + intron 7770850-7770942 asmbl_44173 scaffold_5 + retained_intron 7770850-7770942 asmbl_44172 // Retained and Spliced Intron # retained_intron 7776853-7776926 (orient:+) max_ev_support = 1 # spliced_intron 7776853-7776926 (orient:+) max_ev_support = 2 scaffold_5 + intron 7776853-7776926 asmbl_44174 scaffold_5 + retained_intron 7776853-7776926 asmbl_44175 // Retained and Spliced Intron # retained_intron 8070415-8070604 (orient:+) max_ev_support = 3 # spliced_intron 8070415-8070604 (orient:+) max_ev_support = 2 scaffold_5 + intron 8070415-8070604 asmbl_44185 scaffold_5 + retained_intron 8070415-8070604 asmbl_44184,asmbl_44186 // Exon Skipping and Retention # skipped_exon 8132404-8133608 (orient:+) max_ev_support = 2 # retained_exon 8132682-8132807 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8132682-8132807 asmbl_44191 scaffold_5 + intron_skips_exon 8132404-8133608 asmbl_44192 // Retained and Spliced Intron # retained_intron 8413453-8414764 (orient:+) max_ev_support = 2 # spliced_intron 8413453-8414764 (orient:+) max_ev_support = 2 scaffold_5 + intron 8413453-8414764 asmbl_44210,asmbl_44212 scaffold_5 + retained_intron 8413453-8414764 asmbl_44211 // Exon Skipping and Retention # skipped_exon 8565762-8567600 (orient:+) max_ev_support = 1 # retained_exon 8566223-8566305 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8566223-8566305 asmbl_44215 scaffold_5 + intron_skips_exon 8565762-8567600 asmbl_44216 // Exon Skipping and Retention # skipped_exon 8670847-8673324 (orient:+) max_ev_support = 2 # retained_exon 8671499-8671543 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 8671499-8671543 asmbl_44222 scaffold_5 + intron_skips_exon 8670847-8673324 asmbl_44223 // Retained and Spliced Intron # retained_intron 8748542-8748659 (orient:+) max_ev_support = 2 # spliced_intron 8748542-8748659 (orient:+) max_ev_support = 3 scaffold_5 + intron 8748542-8748659 asmbl_44226,asmbl_44228 scaffold_5 + retained_intron 8748542-8748659 asmbl_44227,asmbl_44229,asmbl_44230 // Retained and Spliced Intron # retained_intron 8748797-8748963 (orient:+) max_ev_support = 2 # spliced_intron 8748797-8748963 (orient:+) max_ev_support = 3 scaffold_5 + intron 8748797-8748963 asmbl_44226,asmbl_44228,asmbl_44229 scaffold_5 + retained_intron 8748797-8748963 asmbl_44227,asmbl_44230 // Retained and Spliced Intron # retained_intron 8746681-8747979 (orient:+) max_ev_support = 2 # spliced_intron 8746681-8747979 (orient:+) max_ev_support = 3 scaffold_5 + intron 8746681-8747979 asmbl_44226,asmbl_44227 scaffold_5 + retained_intron 8746681-8747979 asmbl_44228 // Retained and Spliced Intron # retained_intron 8751102-8751176 (orient:+) max_ev_support = 1 # spliced_intron 8751102-8751176 (orient:+) max_ev_support = 2 scaffold_5 + intron 8751102-8751176 asmbl_44231 scaffold_5 + retained_intron 8751102-8751176 asmbl_44232 // Retained and Spliced Intron # retained_intron 8791720-8791899 (orient:+) max_ev_support = 1 # spliced_intron 8791720-8791899 (orient:+) max_ev_support = 3 scaffold_5 + intron 8791720-8791899 asmbl_44233,asmbl_44234 scaffold_5 + retained_intron 8791720-8791899 asmbl_44237 // Retained and Spliced Intron # retained_intron 8792001-8792555 (orient:+) max_ev_support = 1 # spliced_intron 8792001-8792555 (orient:+) max_ev_support = 3 scaffold_5 + intron 8792001-8792555 asmbl_44233,asmbl_44234,asmbl_44237 scaffold_5 + retained_intron 8792001-8792555 asmbl_44239 // Exon Skipping and Retention # skipped_exon 9083030-9083968 (orient:+) max_ev_support = 1 # retained_exon 9083285-9083410 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9083285-9083410 asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44266,asmbl_44267,asmbl_44268 scaffold_5 + intron_skips_exon 9083030-9083968 asmbl_44265,asmbl_44269,asmbl_44270 // Exon Skipping and Retention # skipped_exon 9084795-9085017 (orient:+) max_ev_support = 1 # retained_exon 9084882-9084950 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9084882-9084950 asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270 scaffold_5 + intron_skips_exon 9084795-9085017 asmbl_44271 // Retained and Spliced Intron # retained_intron 9086221-9086396 (orient:+) max_ev_support = 2 # spliced_intron 9086221-9086396 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086221-9086396 asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271 scaffold_5 + retained_intron 9086221-9086396 asmbl_44260,asmbl_44261 // Retained and Spliced Intron # retained_intron 9086493-9086576 (orient:+) max_ev_support = 2 # spliced_intron 9086493-9086576 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086493-9086576 asmbl_44259,asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44268,asmbl_44269,asmbl_44271 scaffold_5 + retained_intron 9086493-9086576 asmbl_44260 // Retained and Spliced Intron # retained_intron 9086493-9086579 (orient:+) max_ev_support = 2 # spliced_intron 9086493-9086579 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086493-9086579 asmbl_44261,asmbl_44267,asmbl_44270 scaffold_5 + retained_intron 9086493-9086579 asmbl_44260 // Retained and Spliced Intron # retained_intron 9085103-9085212 (orient:+) max_ev_support = 1 # spliced_intron 9085103-9085212 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085103-9085212 asmbl_44259,asmbl_44263,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270 scaffold_5 + retained_intron 9085103-9085212 asmbl_44262,asmbl_44271 // Retained and Spliced Intron # retained_intron 9085338-9085435 (orient:+) max_ev_support = 1 # spliced_intron 9085338-9085435 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085338-9085435 asmbl_44259,asmbl_44265,asmbl_44270 scaffold_5 + retained_intron 9085338-9085435 asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44267,asmbl_44271 // Retained and Spliced Intron # retained_intron 9085338-9085480 (orient:+) max_ev_support = 1 # spliced_intron 9085338-9085480 (orient:+) max_ev_support = 1 scaffold_5 + intron 9085338-9085480 asmbl_44266,asmbl_44268,asmbl_44269 scaffold_5 + retained_intron 9085338-9085480 asmbl_44262,asmbl_44263,asmbl_44264,asmbl_44267,asmbl_44271 // Retained and Spliced Intron # retained_intron 9085614-9085705 (orient:+) max_ev_support = 1 # spliced_intron 9085614-9085705 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085614-9085705 asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271 scaffold_5 + retained_intron 9085614-9085705 asmbl_44263 // Retained and Spliced Intron # retained_intron 9085892-9085964 (orient:+) max_ev_support = 1 # spliced_intron 9085892-9085964 (orient:+) max_ev_support = 2 scaffold_5 + intron 9085892-9085964 asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271 scaffold_5 + retained_intron 9085892-9085964 asmbl_44263 // Retained and Spliced Intron # retained_intron 9086017-9086102 (orient:+) max_ev_support = 1 # spliced_intron 9086017-9086102 (orient:+) max_ev_support = 2 scaffold_5 + intron 9086017-9086102 asmbl_44259,asmbl_44262,asmbl_44264,asmbl_44265,asmbl_44266,asmbl_44267,asmbl_44268,asmbl_44269,asmbl_44270,asmbl_44271 scaffold_5 + retained_intron 9086017-9086102 asmbl_44263 // Retained and Spliced Intron # retained_intron 9092983-9093116 (orient:+) max_ev_support = 1 # spliced_intron 9092983-9093116 (orient:+) max_ev_support = 2 scaffold_5 + intron 9092983-9093116 asmbl_44272,asmbl_44273 scaffold_5 + retained_intron 9092983-9093116 asmbl_44274 // Exon Skipping and Retention # skipped_exon 9648398-9650888 (orient:+) max_ev_support = 2 # retained_exon 9649907-9649963 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9649907-9649963 asmbl_44289 scaffold_5 + intron_skips_exon 9648398-9650888 asmbl_44290 // Exon Skipping and Retention # skipped_exon 9692649-9693303 (orient:+) max_ev_support = 2 # retained_exon 9692756-9692987 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9692756-9692987 asmbl_44296 scaffold_5 + intron_skips_exon 9692649-9693303 asmbl_44295,asmbl_44297 // Exon Skipping and Retention # skipped_exon 9694639-9695172 (orient:+) max_ev_support = 1 # retained_exon 9694783-9694901 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9694783-9694901 asmbl_44296,asmbl_44297 scaffold_5 + intron_skips_exon 9694639-9695172 asmbl_44295 // Exon Skipping and Retention # skipped_exon 9711452-9711983 (orient:+) max_ev_support = 2 # retained_exon 9711759-9711803 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 9711759-9711803 asmbl_44299 scaffold_5 + intron_skips_exon 9711452-9711983 asmbl_44298 // Retained and Spliced Intron # retained_intron 9711452-9711758 (orient:+) max_ev_support = 1 # spliced_intron 9711452-9711758 (orient:+) max_ev_support = 2 scaffold_5 + intron 9711452-9711758 asmbl_44299 scaffold_5 + retained_intron 9711452-9711758 asmbl_44300 // Retained and Spliced Intron # retained_intron 9711452-9711983 (orient:+) max_ev_support = 1 # spliced_intron 9711452-9711983 (orient:+) max_ev_support = 2 scaffold_5 + intron 9711452-9711983 asmbl_44298 scaffold_5 + retained_intron 9711452-9711983 asmbl_44300 // Retained and Spliced Intron # retained_intron 9711804-9711983 (orient:+) max_ev_support = 1 # spliced_intron 9711804-9711983 (orient:+) max_ev_support = 2 scaffold_5 + intron 9711804-9711983 asmbl_44299 scaffold_5 + retained_intron 9711804-9711983 asmbl_44300 // Exon Skipping and Retention # skipped_exon 9811526-9811845 (orient:+) max_ev_support = 2 # retained_exon 9811654-9811747 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 9811654-9811747 asmbl_44311,asmbl_44314 scaffold_5 + intron_skips_exon 9811526-9811845 asmbl_44312 // Retained and Spliced Intron # retained_intron 9812498-9812794 (orient:+) max_ev_support = 3 # spliced_intron 9812498-9812794 (orient:+) max_ev_support = 2 scaffold_5 + intron 9812498-9812794 asmbl_44312,asmbl_44313,asmbl_44314,asmbl_44315 scaffold_5 + retained_intron 9812498-9812794 asmbl_44311 // Retained and Spliced Intron # retained_intron 10132156-10132315 (orient:+) max_ev_support = 2 # spliced_intron 10132156-10132315 (orient:+) max_ev_support = 3 scaffold_5 + intron 10132156-10132315 asmbl_44322,asmbl_44324 scaffold_5 + retained_intron 10132156-10132315 asmbl_44323 // Retained and Spliced Intron # retained_intron 10135753-10135836 (orient:+) max_ev_support = 1 # spliced_intron 10135753-10135836 (orient:+) max_ev_support = 3 scaffold_5 + intron 10135753-10135836 asmbl_44325 scaffold_5 + retained_intron 10135753-10135836 asmbl_44326 // Retained and Spliced Intron # retained_intron 10136208-10136286 (orient:+) max_ev_support = 2 # spliced_intron 10136208-10136286 (orient:+) max_ev_support = 3 scaffold_5 + intron 10136208-10136286 asmbl_44325 scaffold_5 + retained_intron 10136208-10136286 asmbl_44326 // Exon Skipping and Retention # skipped_exon 10170961-10171274 (orient:+) max_ev_support = 1 # retained_exon 10171023-10171094 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 10171023-10171094 asmbl_44331 scaffold_5 + intron_skips_exon 10170961-10171274 asmbl_44333 // Retained and Spliced Intron # retained_intron 10170936-10171022 (orient:+) max_ev_support = 1 # spliced_intron 10170936-10171022 (orient:+) max_ev_support = 2 scaffold_5 + intron 10170936-10171022 asmbl_44331 scaffold_5 + retained_intron 10170936-10171022 asmbl_44334 // Retained and Spliced Intron # retained_intron 10170961-10171274 (orient:+) max_ev_support = 1 # spliced_intron 10170961-10171274 (orient:+) max_ev_support = 1 scaffold_5 + intron 10170961-10171274 asmbl_44333 scaffold_5 + retained_intron 10170961-10171274 asmbl_44334 // Retained and Spliced Intron # retained_intron 10171095-10171274 (orient:+) max_ev_support = 1 # spliced_intron 10171095-10171274 (orient:+) max_ev_support = 2 scaffold_5 + intron 10171095-10171274 asmbl_44331 scaffold_5 + retained_intron 10171095-10171274 asmbl_44334 // Retained and Spliced Intron # retained_intron 10314754-10314836 (orient:+) max_ev_support = 3 # spliced_intron 10314754-10314836 (orient:+) max_ev_support = 2 scaffold_5 + intron 10314754-10314836 asmbl_44344 scaffold_5 + retained_intron 10314754-10314836 asmbl_44343 // Retained and Spliced Intron # retained_intron 10314896-10314969 (orient:+) max_ev_support = 3 # spliced_intron 10314896-10314969 (orient:+) max_ev_support = 2 scaffold_5 + intron 10314896-10314969 asmbl_44344 scaffold_5 + retained_intron 10314896-10314969 asmbl_44343 // Retained and Spliced Intron # retained_intron 10315083-10315200 (orient:+) max_ev_support = 3 # spliced_intron 10315083-10315200 (orient:+) max_ev_support = 2 scaffold_5 + intron 10315083-10315200 asmbl_44344 scaffold_5 + retained_intron 10315083-10315200 asmbl_44343 // Retained and Spliced Intron # retained_intron 10529716-10530671 (orient:+) max_ev_support = 3 # spliced_intron 10529716-10530671 (orient:+) max_ev_support = 1 scaffold_5 + intron 10529716-10530671 asmbl_44347 scaffold_5 + retained_intron 10529716-10530671 asmbl_44345,asmbl_44346 // Retained and Spliced Intron # retained_intron 10804890-10804988 (orient:+) max_ev_support = 1 # spliced_intron 10804890-10804988 (orient:+) max_ev_support = 2 scaffold_5 + intron 10804890-10804988 asmbl_44359,asmbl_44360,asmbl_44362,asmbl_44363 scaffold_5 + retained_intron 10804890-10804988 asmbl_44364 // Retained and Spliced Intron # retained_intron 10852168-10852260 (orient:+) max_ev_support = 1 # spliced_intron 10852168-10852260 (orient:+) max_ev_support = 2 scaffold_5 + intron 10852168-10852260 asmbl_44366,asmbl_44369,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44373 scaffold_5 + retained_intron 10852168-10852260 asmbl_44368 // Retained and Spliced Intron # retained_intron 10853174-10853266 (orient:+) max_ev_support = 1 # spliced_intron 10853174-10853266 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853174-10853266 asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44373 scaffold_5 + retained_intron 10853174-10853266 asmbl_44369 // Retained and Spliced Intron # retained_intron 10853360-10853477 (orient:+) max_ev_support = 1 # spliced_intron 10853360-10853477 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853360-10853477 asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372 scaffold_5 + retained_intron 10853360-10853477 asmbl_44369,asmbl_44373 // Retained and Spliced Intron # retained_intron 10853540-10853712 (orient:+) max_ev_support = 1 # spliced_intron 10853540-10853712 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853540-10853712 asmbl_44366,asmbl_44368,asmbl_44370,asmbl_44371,asmbl_44372,asmbl_44374 scaffold_5 + retained_intron 10853540-10853712 asmbl_44369,asmbl_44373 // Retained and Spliced Intron # retained_intron 10854006-10854093 (orient:+) max_ev_support = 1 # spliced_intron 10854006-10854093 (orient:+) max_ev_support = 2 scaffold_5 + intron 10854006-10854093 asmbl_44366,asmbl_44368,asmbl_44371,asmbl_44372 scaffold_5 + retained_intron 10854006-10854093 asmbl_44370,asmbl_44373,asmbl_44374 // Retained and Spliced Intron # retained_intron 10853790-10853941 (orient:+) max_ev_support = 1 # spliced_intron 10853790-10853941 (orient:+) max_ev_support = 2 scaffold_5 + intron 10853790-10853941 asmbl_44366,asmbl_44368,asmbl_44369,asmbl_44370,asmbl_44371,asmbl_44372 scaffold_5 + retained_intron 10853790-10853941 asmbl_44373,asmbl_44374 // Retained and Spliced Intron # retained_intron 10968500-10969203 (orient:+) max_ev_support = 1 # spliced_intron 10968500-10969203 (orient:+) max_ev_support = 2 scaffold_5 + intron 10968500-10969203 asmbl_44383 scaffold_5 + retained_intron 10968500-10969203 asmbl_44384,asmbl_44385,asmbl_44386 // Retained and Spliced Intron # retained_intron 10969290-10969590 (orient:+) max_ev_support = 1 # spliced_intron 10969290-10969590 (orient:+) max_ev_support = 2 scaffold_5 + intron 10969290-10969590 asmbl_44383,asmbl_44384 scaffold_5 + retained_intron 10969290-10969590 asmbl_44385,asmbl_44386 // Retained and Spliced Intron # retained_intron 10970546-10970703 (orient:+) max_ev_support = 1 # spliced_intron 10970546-10970703 (orient:+) max_ev_support = 2 scaffold_5 + intron 10970546-10970703 asmbl_44383,asmbl_44384,asmbl_44386 scaffold_5 + retained_intron 10970546-10970703 asmbl_44385 // Retained and Spliced Intron # retained_intron 10973470-10973567 (orient:+) max_ev_support = 1 # spliced_intron 10973470-10973567 (orient:+) max_ev_support = 2 scaffold_5 + intron 10973470-10973567 asmbl_44387 scaffold_5 + retained_intron 10973470-10973567 asmbl_44388 // Retained and Spliced Intron # retained_intron 10974515-10975047 (orient:+) max_ev_support = 1 # spliced_intron 10974515-10975047 (orient:+) max_ev_support = 2 scaffold_5 + intron 10974515-10975047 asmbl_44387 scaffold_5 + retained_intron 10974515-10975047 asmbl_44389 // Exon Skipping and Retention # skipped_exon 11638405-11639829 (orient:+) max_ev_support = 3 # retained_exon 11639338-11639396 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 11639338-11639396 asmbl_44423 scaffold_5 + intron_skips_exon 11638405-11639829 asmbl_44425 // Retained and Spliced Intron # retained_intron 11644624-11644686 (orient:+) max_ev_support = 2 # spliced_intron 11644624-11644686 (orient:+) max_ev_support = 1 scaffold_5 + intron 11644624-11644686 asmbl_44427 scaffold_5 + retained_intron 11644624-11644686 asmbl_44426 // Retained and Spliced Intron # retained_intron 11802717-11802845 (orient:+) max_ev_support = 1 # spliced_intron 11802717-11802845 (orient:+) max_ev_support = 2 scaffold_5 + intron 11802717-11802845 asmbl_44431,asmbl_44433 scaffold_5 + retained_intron 11802717-11802845 asmbl_44432 // Exon Skipping and Retention # skipped_exon 11913476-11914441 (orient:+) max_ev_support = 2 # retained_exon 11913811-11913879 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 11913811-11913879 asmbl_44442 scaffold_5 + intron_skips_exon 11913476-11914441 asmbl_44443 // Retained and Spliced Intron # retained_intron 12269864-12269944 (orient:+) max_ev_support = 1 # spliced_intron 12269864-12269944 (orient:+) max_ev_support = 2 scaffold_5 + intron 12269864-12269944 asmbl_44461 scaffold_5 + retained_intron 12269864-12269944 asmbl_44462 // Retained and Spliced Intron # retained_intron 12660558-12661236 (orient:+) max_ev_support = 2 # spliced_intron 12660558-12661236 (orient:+) max_ev_support = 3 scaffold_5 + intron 12660558-12661236 asmbl_44482,asmbl_44488 scaffold_5 + retained_intron 12660558-12661236 asmbl_44483,asmbl_44486,asmbl_44487 // Retained and Spliced Intron # retained_intron 12842254-12842348 (orient:+) max_ev_support = 2 # spliced_intron 12842254-12842348 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842254-12842348 asmbl_44496,asmbl_44500 scaffold_5 + retained_intron 12842254-12842348 asmbl_44497,asmbl_44499 // Retained and Spliced Intron # retained_intron 12842443-12842549 (orient:+) max_ev_support = 2 # spliced_intron 12842443-12842549 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842443-12842549 asmbl_44496,asmbl_44499 scaffold_5 + retained_intron 12842443-12842549 asmbl_44497,asmbl_44500 // Retained and Spliced Intron # retained_intron 12840721-12841915 (orient:+) max_ev_support = 1 # spliced_intron 12840721-12841915 (orient:+) max_ev_support = 3 scaffold_5 + intron 12840721-12841915 asmbl_44496 scaffold_5 + retained_intron 12840721-12841915 asmbl_44498,asmbl_44499,asmbl_44500 // Retained and Spliced Intron # retained_intron 12842021-12842175 (orient:+) max_ev_support = 1 # spliced_intron 12842021-12842175 (orient:+) max_ev_support = 3 scaffold_5 + intron 12842021-12842175 asmbl_44496,asmbl_44498 scaffold_5 + retained_intron 12842021-12842175 asmbl_44499,asmbl_44500 // Retained and Spliced Intron # retained_intron 12909527-12909673 (orient:+) max_ev_support = 3 # spliced_intron 12909527-12909673 (orient:+) max_ev_support = 2 scaffold_5 + intron 12909527-12909673 asmbl_44507 scaffold_5 + retained_intron 12909527-12909673 asmbl_44506 // Retained and Spliced Intron # retained_intron 13022943-13023169 (orient:+) max_ev_support = 2 # spliced_intron 13022943-13023169 (orient:+) max_ev_support = 2 scaffold_5 + intron 13022943-13023169 asmbl_44511 scaffold_5 + retained_intron 13022943-13023169 asmbl_44512 // Retained and Spliced Intron # retained_intron 13022943-13023173 (orient:+) max_ev_support = 2 # spliced_intron 13022943-13023173 (orient:+) max_ev_support = 1 scaffold_5 + intron 13022943-13023173 asmbl_44513 scaffold_5 + retained_intron 13022943-13023173 asmbl_44512 // Retained and Spliced Intron # retained_intron 13067434-13067568 (orient:+) max_ev_support = 2 # spliced_intron 13067434-13067568 (orient:+) max_ev_support = 2 scaffold_5 + intron 13067434-13067568 asmbl_44519 scaffold_5 + retained_intron 13067434-13067568 asmbl_44520 // Retained and Spliced Intron # retained_intron 13110778-13111063 (orient:+) max_ev_support = 2 # spliced_intron 13110778-13111063 (orient:+) max_ev_support = 2 scaffold_5 + intron 13110778-13111063 asmbl_44527 scaffold_5 + retained_intron 13110778-13111063 asmbl_44528 // Retained and Spliced Intron # retained_intron 13162731-13162841 (orient:+) max_ev_support = 1 # spliced_intron 13162731-13162841 (orient:+) max_ev_support = 1 scaffold_5 + intron 13162731-13162841 asmbl_44529 scaffold_5 + retained_intron 13162731-13162841 asmbl_44530 // Exon Skipping and Retention # skipped_exon 13235186-13235685 (orient:+) max_ev_support = 2 # retained_exon 13235395-13235505 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 13235395-13235505 asmbl_44538 scaffold_5 + intron_skips_exon 13235186-13235685 asmbl_44536,asmbl_44537 // Exon Skipping and Retention # skipped_exon 13244510-13245544 (orient:+) max_ev_support = 2 # retained_exon 13245174-13245236 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 13245174-13245236 asmbl_44542,asmbl_44544 scaffold_5 + intron_skips_exon 13244510-13245544 asmbl_44541,asmbl_44545 // Retained and Spliced Intron # retained_intron 13246847-13246949 (orient:+) max_ev_support = 1 # spliced_intron 13246847-13246949 (orient:+) max_ev_support = 2 scaffold_5 + intron 13246847-13246949 asmbl_44541,asmbl_44542,asmbl_44545 scaffold_5 + retained_intron 13246847-13246949 asmbl_44544 // Retained and Spliced Intron # retained_intron 13881229-13881333 (orient:+) max_ev_support = 1 # spliced_intron 13881229-13881333 (orient:+) max_ev_support = 2 scaffold_5 + intron 13881229-13881333 asmbl_44558,asmbl_44559 scaffold_5 + retained_intron 13881229-13881333 asmbl_44560 // Retained and Spliced Intron # retained_intron 14022515-14022662 (orient:+) max_ev_support = 3 # spliced_intron 14022515-14022662 (orient:+) max_ev_support = 3 scaffold_5 + intron 14022515-14022662 asmbl_44563 scaffold_5 + retained_intron 14022515-14022662 asmbl_44564 // Retained and Spliced Intron # retained_intron 14125735-14126570 (orient:+) max_ev_support = 2 # spliced_intron 14125735-14126570 (orient:+) max_ev_support = 1 scaffold_5 + intron 14125735-14126570 asmbl_44574 scaffold_5 + retained_intron 14125735-14126570 asmbl_44573 // Retained and Spliced Intron # retained_intron 14261375-14261517 (orient:+) max_ev_support = 4 # spliced_intron 14261375-14261517 (orient:+) max_ev_support = 2 scaffold_5 + intron 14261375-14261517 asmbl_44586,asmbl_44588,asmbl_44590 scaffold_5 + retained_intron 14261375-14261517 asmbl_44581,asmbl_44582,asmbl_44583 // Retained and Spliced Intron # retained_intron 14261743-14261868 (orient:+) max_ev_support = 2 # spliced_intron 14261743-14261868 (orient:+) max_ev_support = 2 scaffold_5 + intron 14261743-14261868 asmbl_44582,asmbl_44583,asmbl_44590 scaffold_5 + retained_intron 14261743-14261868 asmbl_44581 // Retained and Spliced Intron # retained_intron 14261932-14262394 (orient:+) max_ev_support = 2 # spliced_intron 14261932-14262394 (orient:+) max_ev_support = 1 scaffold_5 + intron 14261932-14262394 asmbl_44582 scaffold_5 + retained_intron 14261932-14262394 asmbl_44581,asmbl_44583 // Exon Skipping and Retention # skipped_exon 14261743-14262734 (orient:+) max_ev_support = 2 # retained_exon 14261869-14262430 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 14261869-14261931,14262395-14262430 asmbl_44582 scaffold_5 + intron_skips_exon 14261743-14262734 asmbl_44586,asmbl_44588 // Exon Skipping and Retention # skipped_exon 14261932-14262734 (orient:+) max_ev_support = 1 # retained_exon 14262395-14262430 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 14262395-14262430 asmbl_44582 scaffold_5 + intron_skips_exon 14261932-14262734 asmbl_44590 // Retained and Spliced Intron # retained_intron 14262861-14263018 (orient:+) max_ev_support = 1 # spliced_intron 14262861-14263018 (orient:+) max_ev_support = 2 scaffold_5 + intron 14262861-14263018 asmbl_44583,asmbl_44586,asmbl_44590 scaffold_5 + retained_intron 14262861-14263018 asmbl_44582,asmbl_44589 // Retained and Spliced Intron # retained_intron 14262861-14263469 (orient:+) max_ev_support = 1 # spliced_intron 14262861-14263469 (orient:+) max_ev_support = 2 scaffold_5 + intron 14262861-14263469 asmbl_44588 scaffold_5 + retained_intron 14262861-14263469 asmbl_44582,asmbl_44589 // Retained and Spliced Intron # retained_intron 14263100-14263469 (orient:+) max_ev_support = 1 # spliced_intron 14263100-14263469 (orient:+) max_ev_support = 2 scaffold_5 + intron 14263100-14263469 asmbl_44583,asmbl_44586,asmbl_44590 scaffold_5 + retained_intron 14263100-14263469 asmbl_44582,asmbl_44589 // Retained and Spliced Intron # retained_intron 14261932-14262734 (orient:+) max_ev_support = 3 # spliced_intron 14261932-14262734 (orient:+) max_ev_support = 1 scaffold_5 + intron 14261932-14262734 asmbl_44590 scaffold_5 + retained_intron 14261932-14262734 asmbl_44583 // Retained and Spliced Intron # retained_intron 14262431-14262734 (orient:+) max_ev_support = 3 # spliced_intron 14262431-14262734 (orient:+) max_ev_support = 1 scaffold_5 + intron 14262431-14262734 asmbl_44582 scaffold_5 + retained_intron 14262431-14262734 asmbl_44583 // Exon Skipping and Retention # skipped_exon 14262861-14263469 (orient:+) max_ev_support = 2 # retained_exon 14263019-14263099 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 14263019-14263099 asmbl_44583,asmbl_44586,asmbl_44590 scaffold_5 + intron_skips_exon 14262861-14263469 asmbl_44588 // Retained and Spliced Intron # retained_intron 14537738-14537847 (orient:+) max_ev_support = 2 # spliced_intron 14537738-14537847 (orient:+) max_ev_support = 2 scaffold_5 + intron 14537738-14537847 asmbl_44608 scaffold_5 + retained_intron 14537738-14537847 asmbl_44609 // Exon Skipping and Retention # skipped_exon 14679462-14680588 (orient:+) max_ev_support = 3 # retained_exon 14680362-14680453 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 14680362-14680453 asmbl_44622 scaffold_5 + intron_skips_exon 14679462-14680588 asmbl_44623 // Retained and Spliced Intron # retained_intron 14680454-14680588 (orient:+) max_ev_support = 2 # spliced_intron 14680454-14680588 (orient:+) max_ev_support = 3 scaffold_5 + intron 14680454-14680588 asmbl_44622 scaffold_5 + retained_intron 14680454-14680588 asmbl_44624 // Exon Skipping and Retention # skipped_exon 15016107-15017415 (orient:+) max_ev_support = 2 # retained_exon 15017060-15017204 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15017060-15017204 asmbl_44640 scaffold_5 + intron_skips_exon 15016107-15017415 asmbl_44639 // Retained and Spliced Intron # retained_intron 15305751-15305837 (orient:+) max_ev_support = 1 # spliced_intron 15305751-15305837 (orient:+) max_ev_support = 3 scaffold_5 + intron 15305751-15305837 asmbl_44651,asmbl_44652 scaffold_5 + retained_intron 15305751-15305837 asmbl_44653 // Exon Skipping and Retention # skipped_exon 15468641-15469211 (orient:+) max_ev_support = 1 # retained_exon 15468880-15469028 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 15468880-15469028 asmbl_44657 scaffold_5 + intron_skips_exon 15468641-15469211 asmbl_44658 // Exon Skipping and Retention # skipped_exon 15681367-15683372 (orient:+) max_ev_support = 1 # retained_exon 15683095-15683232 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15683095-15683232 asmbl_44667,asmbl_44671 scaffold_5 + intron_skips_exon 15681367-15683372 asmbl_44670 // Exon Skipping and Retention # skipped_exon 15703896-15706366 (orient:+) max_ev_support = 1 # retained_exon 15706085-15706211 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15706085-15706211 asmbl_44672,asmbl_44675 scaffold_5 + intron_skips_exon 15703896-15706366 asmbl_44673 // Exon Skipping and Retention # skipped_exon 15703621-15706084 (orient:+) max_ev_support = 2 # retained_exon 15703769-15703895 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 15703769-15703895 asmbl_44673 scaffold_5 + intron_skips_exon 15703621-15706084 asmbl_44672,asmbl_44675 // Retained and Spliced Intron # retained_intron 15765826-15766010 (orient:+) max_ev_support = 2 # spliced_intron 15765826-15766010 (orient:+) max_ev_support = 2 scaffold_5 + intron 15765826-15766010 asmbl_44677,asmbl_44680,asmbl_44681,asmbl_44682,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15765826-15766010 asmbl_44679 // Retained and Spliced Intron # retained_intron 15766384-15766471 (orient:+) max_ev_support = 2 # spliced_intron 15766384-15766471 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766384-15766471 asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15766384-15766471 asmbl_44679,asmbl_44680,asmbl_44681 // Retained and Spliced Intron # retained_intron 15766542-15766727 (orient:+) max_ev_support = 2 # spliced_intron 15766542-15766727 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766542-15766727 asmbl_44677,asmbl_44680,asmbl_44682,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15766542-15766727 asmbl_44679,asmbl_44681 // Retained and Spliced Intron # retained_intron 15765637-15765727 (orient:+) max_ev_support = 1 # spliced_intron 15765637-15765727 (orient:+) max_ev_support = 2 scaffold_5 + intron 15765637-15765727 asmbl_44677,asmbl_44682,asmbl_44684 scaffold_5 + retained_intron 15765637-15765727 asmbl_44680,asmbl_44681,asmbl_44685 // Retained and Spliced Intron # retained_intron 15766781-15766917 (orient:+) max_ev_support = 1 # spliced_intron 15766781-15766917 (orient:+) max_ev_support = 2 scaffold_5 + intron 15766781-15766917 asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15766781-15766917 asmbl_44681 // Retained and Spliced Intron # retained_intron 15767010-15767201 (orient:+) max_ev_support = 1 # spliced_intron 15767010-15767201 (orient:+) max_ev_support = 2 scaffold_5 + intron 15767010-15767201 asmbl_44677,asmbl_44682,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15767010-15767201 asmbl_44681 // Retained and Spliced Intron # retained_intron 15767254-15767399 (orient:+) max_ev_support = 1 # spliced_intron 15767254-15767399 (orient:+) max_ev_support = 2 scaffold_5 + intron 15767254-15767399 asmbl_44677,asmbl_44684,asmbl_44685 scaffold_5 + retained_intron 15767254-15767399 asmbl_44681,asmbl_44682 // Retained and Spliced Intron # retained_intron 15764229-15764723 (orient:+) max_ev_support = 1 # spliced_intron 15764229-15764723 (orient:+) max_ev_support = 2 scaffold_5 + intron 15764229-15764723 asmbl_44677,asmbl_44680,asmbl_44681,asmbl_44682 scaffold_5 + retained_intron 15764229-15764723 asmbl_44684 // Retained and Spliced Intron # retained_intron 15764229-15764728 (orient:+) max_ev_support = 1 # spliced_intron 15764229-15764728 (orient:+) max_ev_support = 1 scaffold_5 + intron 15764229-15764728 asmbl_44683 scaffold_5 + retained_intron 15764229-15764728 asmbl_44684 // Exon Skipping and Retention # skipped_exon 15894091-15896094 (orient:+) max_ev_support = 2 # retained_exon 15894284-15894311 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 15894284-15894311 asmbl_44688 scaffold_5 + intron_skips_exon 15894091-15896094 asmbl_44687,asmbl_44690 // Retained and Spliced Intron # retained_intron 16091466-16091548 (orient:+) max_ev_support = 1 # spliced_intron 16091466-16091548 (orient:+) max_ev_support = 2 scaffold_5 + intron 16091466-16091548 asmbl_44703 scaffold_5 + retained_intron 16091466-16091548 asmbl_44704 // Retained and Spliced Intron # retained_intron 16206282-16206377 (orient:+) max_ev_support = 1 # spliced_intron 16206282-16206377 (orient:+) max_ev_support = 1 scaffold_5 + intron 16206282-16206377 asmbl_44720 scaffold_5 + retained_intron 16206282-16206377 asmbl_44718 // Retained and Spliced Intron # retained_intron 16206282-16206597 (orient:+) max_ev_support = 1 # spliced_intron 16206282-16206597 (orient:+) max_ev_support = 3 scaffold_5 + intron 16206282-16206597 asmbl_44717,asmbl_44719 scaffold_5 + retained_intron 16206282-16206597 asmbl_44718 // Retained and Spliced Intron # retained_intron 16246188-16246207 (orient:+) max_ev_support = 4 # spliced_intron 16246188-16246207 (orient:+) max_ev_support = 1 scaffold_5 + intron 16246188-16246207 asmbl_44723 scaffold_5 + retained_intron 16246188-16246207 asmbl_44722 // Retained and Spliced Intron # retained_intron 16258346-16258731 (orient:+) max_ev_support = 1 # spliced_intron 16258346-16258731 (orient:+) max_ev_support = 2 scaffold_5 + intron 16258346-16258731 asmbl_44725 scaffold_5 + retained_intron 16258346-16258731 asmbl_44726 // Retained and Spliced Intron # retained_intron 16320680-16320777 (orient:+) max_ev_support = 1 # spliced_intron 16320680-16320777 (orient:+) max_ev_support = 2 scaffold_5 + intron 16320680-16320777 asmbl_44743,asmbl_44746 scaffold_5 + retained_intron 16320680-16320777 asmbl_44745 // Retained and Spliced Intron # retained_intron 16321133-16321283 (orient:+) max_ev_support = 1 # spliced_intron 16321133-16321283 (orient:+) max_ev_support = 2 scaffold_5 + intron 16321133-16321283 asmbl_44743,asmbl_44746 scaffold_5 + retained_intron 16321133-16321283 asmbl_44745 // Retained and Spliced Intron # retained_intron 16318561-16318674 (orient:+) max_ev_support = 1 # spliced_intron 16318561-16318674 (orient:+) max_ev_support = 2 scaffold_5 + intron 16318561-16318674 asmbl_44743,asmbl_44745 scaffold_5 + retained_intron 16318561-16318674 asmbl_44746 // Retained and Spliced Intron # retained_intron 16314540-16314719 (orient:+) max_ev_support = 1 # spliced_intron 16314540-16314719 (orient:+) max_ev_support = 2 scaffold_5 + intron 16314540-16314719 asmbl_44743,asmbl_44745,asmbl_44746 scaffold_5 + retained_intron 16314540-16314719 asmbl_44747 // Retained and Spliced Intron # retained_intron 16650755-16650859 (orient:+) max_ev_support = 4 # spliced_intron 16650755-16650859 (orient:+) max_ev_support = 2 scaffold_5 + intron 16650755-16650859 asmbl_44775,asmbl_44776,asmbl_44777,asmbl_44778 scaffold_5 + retained_intron 16650755-16650859 asmbl_44774 // Exon Skipping and Retention # skipped_exon 16645579-16646640 (orient:+) max_ev_support = 2 # retained_exon 16646474-16646497 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 16646474-16646497 asmbl_44776 scaffold_5 + intron_skips_exon 16645579-16646640 asmbl_44775 // Retained and Spliced Intron # retained_intron 16648366-16648547 (orient:+) max_ev_support = 2 # spliced_intron 16648366-16648547 (orient:+) max_ev_support = 2 scaffold_5 + intron 16648366-16648547 asmbl_44775,asmbl_44776,asmbl_44778 scaffold_5 + retained_intron 16648366-16648547 asmbl_44777 // Exon Skipping and Retention # skipped_exon 17025179-17028124 (orient:+) max_ev_support = 1 # retained_exon 17026978-17027051 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 17026978-17027051 asmbl_44791 scaffold_5 + intron_skips_exon 17025179-17028124 asmbl_44793 // Exon Skipping and Retention # skipped_exon 17036765-17037141 (orient:+) max_ev_support = 3 # retained_exon 17036890-17037031 (orient:+) max_ev_support = 3 scaffold_5 + retained_exons 17036890-17037031 asmbl_44794 scaffold_5 + intron_skips_exon 17036765-17037141 asmbl_44795 // Exon Skipping and Retention # skipped_exon 17192140-17194833 (orient:+) max_ev_support = 1 # retained_exon 17194625-17194725 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 17194625-17194725 asmbl_44803 scaffold_5 + intron_skips_exon 17192140-17194833 asmbl_44804 // Exon Skipping and Retention # skipped_exon 17191832-17194624 (orient:+) max_ev_support = 1 # retained_exon 17192039-17192139 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 17192039-17192139 asmbl_44804 scaffold_5 + intron_skips_exon 17191832-17194624 asmbl_44803 // Retained and Spliced Intron # retained_intron 17226676-17226936 (orient:+) max_ev_support = 3 # spliced_intron 17226676-17226936 (orient:+) max_ev_support = 2 scaffold_5 + intron 17226676-17226936 asmbl_44810,asmbl_44812,asmbl_44813,asmbl_44815 scaffold_5 + retained_intron 17226676-17226936 asmbl_44808,asmbl_44814 // Retained and Spliced Intron # retained_intron 17227119-17227597 (orient:+) max_ev_support = 5 # spliced_intron 17227119-17227597 (orient:+) max_ev_support = 2 scaffold_5 + intron 17227119-17227597 asmbl_44810,asmbl_44812,asmbl_44813,asmbl_44814,asmbl_44815 scaffold_5 + retained_intron 17227119-17227597 asmbl_44808 // Exon Skipping and Retention # skipped_exon 17224836-17226346 (orient:+) max_ev_support = 2 # retained_exon 17225624-17225757 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 17225624-17225757 asmbl_44810 scaffold_5 + intron_skips_exon 17224836-17226346 asmbl_44812 // Retained and Spliced Intron # retained_intron 17301487-17301540 (orient:+) max_ev_support = 3 # spliced_intron 17301487-17301540 (orient:+) max_ev_support = 1 scaffold_5 + intron 17301487-17301540 asmbl_44821 scaffold_5 + retained_intron 17301487-17301540 asmbl_44819,asmbl_44820 // Exon Skipping and Retention # skipped_exon 17976293-17978662 (orient:+) max_ev_support = 1 # retained_exon 17976420-17976597 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 17976420-17976597 asmbl_44858 scaffold_5 + intron_skips_exon 17976293-17978662 asmbl_44859 // Retained and Spliced Intron # retained_intron 18249279-18249475 (orient:+) max_ev_support = 3 # spliced_intron 18249279-18249475 (orient:+) max_ev_support = 2 scaffold_5 + intron 18249279-18249475 asmbl_44883 scaffold_5 + retained_intron 18249279-18249475 asmbl_44882,asmbl_44884,asmbl_44885 // Retained and Spliced Intron # retained_intron 18255195-18255273 (orient:+) max_ev_support = 2 # spliced_intron 18255195-18255273 (orient:+) max_ev_support = 3 scaffold_5 + intron 18255195-18255273 asmbl_44886 scaffold_5 + retained_intron 18255195-18255273 asmbl_44889 // Retained and Spliced Intron # retained_intron 18255418-18255824 (orient:+) max_ev_support = 1 # spliced_intron 18255418-18255824 (orient:+) max_ev_support = 3 scaffold_5 + intron 18255418-18255824 asmbl_44886,asmbl_44889 scaffold_5 + retained_intron 18255418-18255824 asmbl_44890 // Exon Skipping and Retention # skipped_exon 18261866-18263891 (orient:+) max_ev_support = 2 # retained_exon 18262627-18262698 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18262627-18262698 asmbl_44892 scaffold_5 + intron_skips_exon 18261866-18263891 asmbl_44893,asmbl_44896 // Retained and Spliced Intron # retained_intron 18264036-18264289 (orient:+) max_ev_support = 2 # spliced_intron 18264036-18264289 (orient:+) max_ev_support = 2 scaffold_5 + intron 18264036-18264289 asmbl_44892,asmbl_44893,asmbl_44896,asmbl_44897 scaffold_5 + retained_intron 18264036-18264289 asmbl_44895 // Retained and Spliced Intron # retained_intron 18265468-18265781 (orient:+) max_ev_support = 1 # spliced_intron 18265468-18265781 (orient:+) max_ev_support = 2 scaffold_5 + intron 18265468-18265781 asmbl_44892,asmbl_44893,asmbl_44895,asmbl_44897 scaffold_5 + retained_intron 18265468-18265781 asmbl_44896,asmbl_44898 // Exon Skipping and Retention # skipped_exon 18327976-18328372 (orient:+) max_ev_support = 1 # retained_exon 18328102-18328179 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18328102-18328179 asmbl_44904 scaffold_5 + intron_skips_exon 18327976-18328372 asmbl_44905 // Retained and Spliced Intron # retained_intron 18404543-18404691 (orient:+) max_ev_support = 1 # spliced_intron 18404543-18404691 (orient:+) max_ev_support = 2 scaffold_5 + intron 18404543-18404691 asmbl_44914 scaffold_5 + retained_intron 18404543-18404691 asmbl_44915 // Retained and Spliced Intron # retained_intron 18561228-18562070 (orient:+) max_ev_support = 4 # spliced_intron 18561228-18562070 (orient:+) max_ev_support = 2 scaffold_5 + intron 18561228-18562070 asmbl_44922,asmbl_44926,asmbl_44927 scaffold_5 + retained_intron 18561228-18562070 asmbl_44920,asmbl_44921 // Retained and Spliced Intron # retained_intron 18562167-18562393 (orient:+) max_ev_support = 3 # spliced_intron 18562167-18562393 (orient:+) max_ev_support = 2 scaffold_5 + intron 18562167-18562393 asmbl_44922,asmbl_44926,asmbl_44927 scaffold_5 + retained_intron 18562167-18562393 asmbl_44920,asmbl_44921 // Retained and Spliced Intron # retained_intron 18560743-18560926 (orient:+) max_ev_support = 1 # spliced_intron 18560743-18560926 (orient:+) max_ev_support = 2 scaffold_5 + intron 18560743-18560926 asmbl_44923,asmbl_44924,asmbl_44927 scaffold_5 + retained_intron 18560743-18560926 asmbl_44921 // Retained and Spliced Intron # retained_intron 18561018-18561149 (orient:+) max_ev_support = 2 # spliced_intron 18561018-18561149 (orient:+) max_ev_support = 2 scaffold_5 + intron 18561018-18561149 asmbl_44920,asmbl_44922,asmbl_44924,asmbl_44926,asmbl_44927 scaffold_5 + retained_intron 18561018-18561149 asmbl_44925 // Retained and Spliced Intron # retained_intron 18561081-18561149 (orient:+) max_ev_support = 2 # spliced_intron 18561081-18561149 (orient:+) max_ev_support = 2 scaffold_5 + intron 18561081-18561149 asmbl_44921,asmbl_44923 scaffold_5 + retained_intron 18561081-18561149 asmbl_44925 // Retained and Spliced Intron # retained_intron 18574353-18574611 (orient:+) max_ev_support = 1 # spliced_intron 18574353-18574611 (orient:+) max_ev_support = 3 scaffold_5 + intron 18574353-18574611 asmbl_44928 scaffold_5 + retained_intron 18574353-18574611 asmbl_44930 // Retained and Spliced Intron # retained_intron 18808969-18809061 (orient:+) max_ev_support = 1 # spliced_intron 18808969-18809061 (orient:+) max_ev_support = 2 scaffold_5 + intron 18808969-18809061 asmbl_44941 scaffold_5 + retained_intron 18808969-18809061 asmbl_44942 // Exon Skipping and Retention # skipped_exon 18818689-18820189 (orient:+) max_ev_support = 1 # retained_exon 18819599-18819678 (orient:+) max_ev_support = 2 scaffold_5 + retained_exons 18819599-18819678 asmbl_44944 scaffold_5 + intron_skips_exon 18818689-18820189 asmbl_44945 // Exon Skipping and Retention # skipped_exon 18819679-18821046 (orient:+) max_ev_support = 2 # retained_exon 18820190-18820269 (orient:+) max_ev_support = 1 scaffold_5 + retained_exons 18820190-18820269 asmbl_44945 scaffold_5 + intron_skips_exon 18819679-18821046 asmbl_44944 // Retained and Spliced Intron # retained_intron 18981494-18981592 (orient:+) max_ev_support = 2 # spliced_intron 18981494-18981592 (orient:+) max_ev_support = 3 scaffold_5 + intron 18981494-18981592 asmbl_44949 scaffold_5 + retained_intron 18981494-18981592 asmbl_44950 // Retained and Spliced Intron # retained_intron 19440530-19440725 (orient:+) max_ev_support = 2 # spliced_intron 19440530-19440725 (orient:+) max_ev_support = 3 scaffold_5 + intron 19440530-19440725 asmbl_44972 scaffold_5 + retained_intron 19440530-19440725 asmbl_44973 // Retained and Spliced Intron # retained_intron 19648196-19648470 (orient:+) max_ev_support = 7 # spliced_intron 19648196-19648470 (orient:+) max_ev_support = 1 scaffold_5 + intron 19648196-19648470 asmbl_44982 scaffold_5 + retained_intron 19648196-19648470 asmbl_44981 // Retained and Spliced Intron # retained_intron 107811-108165 (orient:-) max_ev_support = 1 # spliced_intron 107811-108165 (orient:-) max_ev_support = 1 scaffold_5 - intron 107811-108165 asmbl_45143 scaffold_5 - retained_intron 107811-108165 asmbl_45142,asmbl_45144 // Retained and Spliced Intron # retained_intron 108210-108423 (orient:-) max_ev_support = 1 # spliced_intron 108210-108423 (orient:-) max_ev_support = 1 scaffold_5 - intron 108210-108423 asmbl_45143 scaffold_5 - retained_intron 108210-108423 asmbl_45142,asmbl_45144 // Retained and Spliced Intron # retained_intron 108645-109025 (orient:-) max_ev_support = 1 # spliced_intron 108645-109025 (orient:-) max_ev_support = 1 scaffold_5 - intron 108645-109025 asmbl_45142,asmbl_45143 scaffold_5 - retained_intron 108645-109025 asmbl_45144 // Exon Skipping and Retention # skipped_exon 204918-205658 (orient:-) max_ev_support = 2 # retained_exon 205391-205546 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 205391-205546 asmbl_45147 scaffold_5 - intron_skips_exon 204918-205658 asmbl_45148 // Exon Skipping and Retention # skipped_exon 236613-238629 (orient:-) max_ev_support = 1 # retained_exon 238215-238313 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 238215-238313 asmbl_45151 scaffold_5 - intron_skips_exon 236613-238629 asmbl_45152 // Exon Skipping and Retention # skipped_exon 237071-239063 (orient:-) max_ev_support = 1 # retained_exon 238215-238772 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 238215-238313,238630-238772 asmbl_45151 scaffold_5 - intron_skips_exon 237071-239063 asmbl_45153 // Exon Skipping and Retention # skipped_exon 237502-239376 (orient:-) max_ev_support = 1 # retained_exon 238215-239201 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 238215-238313,238630-238772,239064-239201 asmbl_45151 scaffold_5 - intron_skips_exon 237502-239376 asmbl_45154 // Exon Skipping and Retention # skipped_exon 235742-238214 (orient:-) max_ev_support = 3 # retained_exon 236514-236612 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 236514-236612 asmbl_45152 scaffold_5 - intron_skips_exon 235742-238214 asmbl_45151 // Retained and Spliced Intron # retained_intron 420430-420561 (orient:-) max_ev_support = 1 # spliced_intron 420430-420561 (orient:-) max_ev_support = 1 scaffold_5 - intron 420430-420561 asmbl_45169 scaffold_5 - retained_intron 420430-420561 asmbl_45168 // Retained and Spliced Intron # retained_intron 420596-420639 (orient:-) max_ev_support = 1 # spliced_intron 420596-420639 (orient:-) max_ev_support = 1 scaffold_5 - intron 420596-420639 asmbl_45169 scaffold_5 - retained_intron 420596-420639 asmbl_45168 // Retained and Spliced Intron # retained_intron 939420-939502 (orient:-) max_ev_support = 1 # spliced_intron 939420-939502 (orient:-) max_ev_support = 1 scaffold_5 - intron 939420-939502 asmbl_45188 scaffold_5 - retained_intron 939420-939502 asmbl_45186 // Retained and Spliced Intron # retained_intron 939477-939513 (orient:-) max_ev_support = 1 # spliced_intron 939477-939513 (orient:-) max_ev_support = 1 scaffold_5 - intron 939477-939513 asmbl_45187 scaffold_5 - retained_intron 939477-939513 asmbl_45186 // Retained and Spliced Intron # retained_intron 966879-967824 (orient:-) max_ev_support = 6 # spliced_intron 966879-967824 (orient:-) max_ev_support = 1 scaffold_5 - intron 966879-967824 asmbl_45194 scaffold_5 - retained_intron 966879-967824 asmbl_45192 // Retained and Spliced Intron # retained_intron 1136209-1136301 (orient:-) max_ev_support = 1 # spliced_intron 1136209-1136301 (orient:-) max_ev_support = 1 scaffold_5 - intron 1136209-1136301 asmbl_45218 scaffold_5 - retained_intron 1136209-1136301 asmbl_45219 // Exon Skipping and Retention # skipped_exon 1227975-1228566 (orient:-) max_ev_support = 1 # retained_exon 1228071-1228148 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 1228071-1228148 asmbl_45231 scaffold_5 - intron_skips_exon 1227975-1228566 asmbl_45232 // Retained and Spliced Intron # retained_intron 1249035-1249146 (orient:-) max_ev_support = 2 # spliced_intron 1249035-1249146 (orient:-) max_ev_support = 3 scaffold_5 - intron 1249035-1249146 asmbl_45235,asmbl_45240 scaffold_5 - retained_intron 1249035-1249146 asmbl_45236 // Retained and Spliced Intron # retained_intron 1249677-1249957 (orient:-) max_ev_support = 2 # spliced_intron 1249677-1249957 (orient:-) max_ev_support = 3 scaffold_5 - intron 1249677-1249957 asmbl_45235,asmbl_45240 scaffold_5 - retained_intron 1249677-1249957 asmbl_45237,asmbl_45238 // Retained and Spliced Intron # retained_intron 1250555-1251453 (orient:-) max_ev_support = 2 # spliced_intron 1250555-1251453 (orient:-) max_ev_support = 3 scaffold_5 - intron 1250555-1251453 asmbl_45235 scaffold_5 - retained_intron 1250555-1251453 asmbl_45239,asmbl_45240 // Retained and Spliced Intron # retained_intron 1504160-1504271 (orient:-) max_ev_support = 1 # spliced_intron 1504160-1504271 (orient:-) max_ev_support = 3 scaffold_5 - intron 1504160-1504271 asmbl_45244 scaffold_5 - retained_intron 1504160-1504271 asmbl_45245 // Retained and Spliced Intron # retained_intron 1548461-1548523 (orient:-) max_ev_support = 4 # spliced_intron 1548461-1548523 (orient:-) max_ev_support = 1 scaffold_5 - intron 1548461-1548523 asmbl_45251 scaffold_5 - retained_intron 1548461-1548523 asmbl_45249 // Retained and Spliced Intron # retained_intron 1548461-1548586 (orient:-) max_ev_support = 4 # spliced_intron 1548461-1548586 (orient:-) max_ev_support = 1 scaffold_5 - intron 1548461-1548586 asmbl_45250 scaffold_5 - retained_intron 1548461-1548586 asmbl_45249 // Retained and Spliced Intron # retained_intron 1548524-1548586 (orient:-) max_ev_support = 2 # spliced_intron 1548524-1548586 (orient:-) max_ev_support = 3 scaffold_5 - intron 1548524-1548586 asmbl_45248 scaffold_5 - retained_intron 1548524-1548586 asmbl_45249 // Exon Skipping and Retention # skipped_exon 2166979-2168141 (orient:-) max_ev_support = 1 # retained_exon 2167501-2167719 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 2167501-2167719 asmbl_45264 scaffold_5 - intron_skips_exon 2166979-2168141 asmbl_45265 // Exon Skipping and Retention # skipped_exon 2173563-2176098 (orient:-) max_ev_support = 1 # retained_exon 2175608-2175728 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 2175608-2175728 asmbl_45264,asmbl_45265 scaffold_5 - intron_skips_exon 2173563-2176098 asmbl_45266 // Exon Skipping and Retention # skipped_exon 2166397-2167500 (orient:-) max_ev_support = 2 # retained_exon 2166760-2166978 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 2166760-2166978 asmbl_45265 scaffold_5 - intron_skips_exon 2166397-2167500 asmbl_45264 // Retained and Spliced Intron # retained_intron 2234179-2234653 (orient:-) max_ev_support = 4 # spliced_intron 2234179-2234653 (orient:-) max_ev_support = 1 scaffold_5 - intron 2234179-2234653 asmbl_45268,asmbl_45269 scaffold_5 - retained_intron 2234179-2234653 asmbl_45267 // Retained and Spliced Intron # retained_intron 2234854-2234891 (orient:-) max_ev_support = 2 # spliced_intron 2234854-2234891 (orient:-) max_ev_support = 1 scaffold_5 - intron 2234854-2234891 asmbl_45269 scaffold_5 - retained_intron 2234854-2234891 asmbl_45267 // Retained and Spliced Intron # retained_intron 2242543-2242602 (orient:-) max_ev_support = 2 # spliced_intron 2242543-2242602 (orient:-) max_ev_support = 1 scaffold_5 - intron 2242543-2242602 asmbl_45274 scaffold_5 - retained_intron 2242543-2242602 asmbl_45273 // Retained and Spliced Intron # retained_intron 2668980-2669850 (orient:-) max_ev_support = 2 # spliced_intron 2668980-2669850 (orient:-) max_ev_support = 2 scaffold_5 - intron 2668980-2669850 asmbl_45279,asmbl_45281,asmbl_45284 scaffold_5 - retained_intron 2668980-2669850 asmbl_45280,asmbl_45285 // Retained and Spliced Intron # retained_intron 2673418-2674638 (orient:-) max_ev_support = 2 # spliced_intron 2673418-2674638 (orient:-) max_ev_support = 2 scaffold_5 - intron 2673418-2674638 asmbl_45282,asmbl_45284 scaffold_5 - retained_intron 2673418-2674638 asmbl_45281,asmbl_45283,asmbl_45285 // Exon Skipping and Retention # skipped_exon 3591643-3592652 (orient:-) max_ev_support = 2 # retained_exon 3591749-3591793 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 3591749-3591793 asmbl_45311 scaffold_5 - intron_skips_exon 3591643-3592652 asmbl_45309,asmbl_45312 // Exon Skipping and Retention # skipped_exon 3591643-3592703 (orient:-) max_ev_support = 2 # retained_exon 3591749-3591793 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 3591749-3591793 asmbl_45311 scaffold_5 - intron_skips_exon 3591643-3592703 asmbl_45310 // Retained and Spliced Intron # retained_intron 3935983-3936174 (orient:-) max_ev_support = 1 # spliced_intron 3935983-3936174 (orient:-) max_ev_support = 1 scaffold_5 - intron 3935983-3936174 asmbl_45321 scaffold_5 - retained_intron 3935983-3936174 asmbl_45320 // Exon Skipping and Retention # skipped_exon 4628574-4630113 (orient:-) max_ev_support = 2 # retained_exon 4628791-4628841 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 4628791-4628841 asmbl_45353 scaffold_5 - intron_skips_exon 4628574-4630113 asmbl_45352 // Retained and Spliced Intron # retained_intron 4683007-4683535 (orient:-) max_ev_support = 2 # spliced_intron 4683007-4683535 (orient:-) max_ev_support = 1 scaffold_5 - intron 4683007-4683535 asmbl_45373,asmbl_45379,asmbl_45381,asmbl_45382 scaffold_5 - retained_intron 4683007-4683535 asmbl_45371 // Exon Skipping and Retention # skipped_exon 4683007-4684210 (orient:-) max_ev_support = 2 # retained_exon 4683536-4683961 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4683536-4683553,4683950-4683961 asmbl_45373,asmbl_45379,asmbl_45381,asmbl_45382 scaffold_5 - intron_skips_exon 4683007-4684210 asmbl_45370,asmbl_45377,asmbl_45380 // Exon Skipping and Retention # skipped_exon 4683049-4684210 (orient:-) max_ev_support = 1 # retained_exon 4683536-4683961 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4683536-4683553,4683950-4683961 asmbl_45373,asmbl_45379,asmbl_45381,asmbl_45382 scaffold_5 - intron_skips_exon 4683049-4684210 asmbl_45372 // Exon Skipping and Retention # skipped_exon 4688617-4690762 (orient:-) max_ev_support = 2 # retained_exon 4689531-4689818 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 4689531-4689818 asmbl_45379,asmbl_45380 scaffold_5 - intron_skips_exon 4688617-4690762 asmbl_45370,asmbl_45372,asmbl_45373,asmbl_45377,asmbl_45378,asmbl_45381,asmbl_45382 // Retained and Spliced Intron # retained_intron 5026994-5027082 (orient:-) max_ev_support = 1 # spliced_intron 5026994-5027082 (orient:-) max_ev_support = 2 scaffold_5 - intron 5026994-5027082 asmbl_45408,asmbl_45410 scaffold_5 - retained_intron 5026994-5027082 asmbl_45411 // Retained and Spliced Intron # retained_intron 5039918-5039996 (orient:-) max_ev_support = 2 # spliced_intron 5039918-5039996 (orient:-) max_ev_support = 2 scaffold_5 - intron 5039918-5039996 asmbl_45412 scaffold_5 - retained_intron 5039918-5039996 asmbl_45413 // Retained and Spliced Intron # retained_intron 5063957-5064056 (orient:-) max_ev_support = 2 # spliced_intron 5063957-5064056 (orient:-) max_ev_support = 3 scaffold_5 - intron 5063957-5064056 asmbl_45415 scaffold_5 - retained_intron 5063957-5064056 asmbl_45416 // Retained and Spliced Intron # retained_intron 5063957-5064081 (orient:-) max_ev_support = 2 # spliced_intron 5063957-5064081 (orient:-) max_ev_support = 2 scaffold_5 - intron 5063957-5064081 asmbl_45414 scaffold_5 - retained_intron 5063957-5064081 asmbl_45416 // Retained and Spliced Intron # retained_intron 5064190-5064837 (orient:-) max_ev_support = 2 # spliced_intron 5064190-5064837 (orient:-) max_ev_support = 3 scaffold_5 - intron 5064190-5064837 asmbl_45414,asmbl_45415 scaffold_5 - retained_intron 5064190-5064837 asmbl_45416 // Retained and Spliced Intron # retained_intron 5622048-5622220 (orient:-) max_ev_support = 2 # spliced_intron 5622048-5622220 (orient:-) max_ev_support = 1 scaffold_5 - intron 5622048-5622220 asmbl_45439,asmbl_45440,asmbl_45441 scaffold_5 - retained_intron 5622048-5622220 asmbl_45436 // Retained and Spliced Intron # retained_intron 5838814-5839033 (orient:-) max_ev_support = 1 # spliced_intron 5838814-5839033 (orient:-) max_ev_support = 2 scaffold_5 - intron 5838814-5839033 asmbl_45446 scaffold_5 - retained_intron 5838814-5839033 asmbl_45447 // Retained and Spliced Intron # retained_intron 5843212-5843431 (orient:-) max_ev_support = 1 # spliced_intron 5843212-5843431 (orient:-) max_ev_support = 1 scaffold_5 - intron 5843212-5843431 asmbl_45448 scaffold_5 - retained_intron 5843212-5843431 asmbl_45449 // Retained and Spliced Intron # retained_intron 5985954-5986256 (orient:-) max_ev_support = 3 # spliced_intron 5985954-5986256 (orient:-) max_ev_support = 2 scaffold_5 - intron 5985954-5986256 asmbl_45460 scaffold_5 - retained_intron 5985954-5986256 asmbl_45459 // Retained and Spliced Intron # retained_intron 6012524-6013080 (orient:-) max_ev_support = 1 # spliced_intron 6012524-6013080 (orient:-) max_ev_support = 2 scaffold_5 - intron 6012524-6013080 asmbl_45465 scaffold_5 - retained_intron 6012524-6013080 asmbl_45469 // Retained and Spliced Intron # retained_intron 6578599-6580344 (orient:-) max_ev_support = 2 # spliced_intron 6578599-6580344 (orient:-) max_ev_support = 2 scaffold_5 - intron 6578599-6580344 asmbl_45484 scaffold_5 - retained_intron 6578599-6580344 asmbl_45485 // Retained and Spliced Intron # retained_intron 6576837-6576949 (orient:-) max_ev_support = 2 # spliced_intron 6576837-6576949 (orient:-) max_ev_support = 2 scaffold_5 - intron 6576837-6576949 asmbl_45484,asmbl_45485 scaffold_5 - retained_intron 6576837-6576949 asmbl_45486 // Retained and Spliced Intron # retained_intron 6584076-6584215 (orient:-) max_ev_support = 1 # spliced_intron 6584076-6584215 (orient:-) max_ev_support = 1 scaffold_5 - intron 6584076-6584215 asmbl_45492,asmbl_45493 scaffold_5 - retained_intron 6584076-6584215 asmbl_45494 // Retained and Spliced Intron # retained_intron 6629852-6630029 (orient:-) max_ev_support = 2 # spliced_intron 6629852-6630029 (orient:-) max_ev_support = 1 scaffold_5 - intron 6629852-6630029 asmbl_45509,asmbl_45510 scaffold_5 - retained_intron 6629852-6630029 asmbl_45508 // Retained and Spliced Intron # retained_intron 6708882-6708998 (orient:-) max_ev_support = 3 # spliced_intron 6708882-6708998 (orient:-) max_ev_support = 2 scaffold_5 - intron 6708882-6708998 asmbl_45517 scaffold_5 - retained_intron 6708882-6708998 asmbl_45516,asmbl_45518 // Retained and Spliced Intron # retained_intron 6708613-6708819 (orient:-) max_ev_support = 2 # spliced_intron 6708613-6708819 (orient:-) max_ev_support = 3 scaffold_5 - intron 6708613-6708819 asmbl_45516,asmbl_45517 scaffold_5 - retained_intron 6708613-6708819 asmbl_45518 // Retained and Spliced Intron # retained_intron 6737990-6738085 (orient:-) max_ev_support = 2 # spliced_intron 6737990-6738085 (orient:-) max_ev_support = 1 scaffold_5 - intron 6737990-6738085 asmbl_45524 scaffold_5 - retained_intron 6737990-6738085 asmbl_45521 // Retained and Spliced Intron # retained_intron 6835252-6835402 (orient:-) max_ev_support = 1 # spliced_intron 6835252-6835402 (orient:-) max_ev_support = 2 scaffold_5 - intron 6835252-6835402 asmbl_45536 scaffold_5 - retained_intron 6835252-6835402 asmbl_45537 // Retained and Spliced Intron # retained_intron 6853682-6853716 (orient:-) max_ev_support = 1 # spliced_intron 6853682-6853716 (orient:-) max_ev_support = 1 scaffold_5 - intron 6853682-6853716 asmbl_45539 scaffold_5 - retained_intron 6853682-6853716 asmbl_45540 // Exon Skipping and Retention # skipped_exon 7410771-7411904 (orient:-) max_ev_support = 1 # retained_exon 7411154-7411201 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 7411154-7411201 asmbl_45559,asmbl_45560 scaffold_5 - intron_skips_exon 7410771-7411904 asmbl_45558 // Retained and Spliced Intron # retained_intron 7710260-7710370 (orient:-) max_ev_support = 2 # spliced_intron 7710260-7710370 (orient:-) max_ev_support = 2 scaffold_5 - intron 7710260-7710370 asmbl_45572 scaffold_5 - retained_intron 7710260-7710370 asmbl_45571,asmbl_45573 // Retained and Spliced Intron # retained_intron 7711197-7711308 (orient:-) max_ev_support = 2 # spliced_intron 7711197-7711308 (orient:-) max_ev_support = 1 scaffold_5 - intron 7711197-7711308 asmbl_45573 scaffold_5 - retained_intron 7711197-7711308 asmbl_45571,asmbl_45572 // Retained and Spliced Intron # retained_intron 8119952-8121390 (orient:-) max_ev_support = 2 # spliced_intron 8119952-8121390 (orient:-) max_ev_support = 2 scaffold_5 - intron 8119952-8121390 asmbl_45582 scaffold_5 - retained_intron 8119952-8121390 asmbl_45581 // Retained and Spliced Intron # retained_intron 8539438-8539884 (orient:-) max_ev_support = 1 # spliced_intron 8539438-8539884 (orient:-) max_ev_support = 2 scaffold_5 - intron 8539438-8539884 asmbl_45601 scaffold_5 - retained_intron 8539438-8539884 asmbl_45594,asmbl_45595 // Retained and Spliced Intron # retained_intron 8539438-8539947 (orient:-) max_ev_support = 1 # spliced_intron 8539438-8539947 (orient:-) max_ev_support = 2 scaffold_5 - intron 8539438-8539947 asmbl_45593,asmbl_45596,asmbl_45598,asmbl_45602 scaffold_5 - retained_intron 8539438-8539947 asmbl_45594,asmbl_45595 // Retained and Spliced Intron # retained_intron 8538359-8538561 (orient:-) max_ev_support = 2 # spliced_intron 8538359-8538561 (orient:-) max_ev_support = 2 scaffold_5 - intron 8538359-8538561 asmbl_45593,asmbl_45595,asmbl_45596,asmbl_45598,asmbl_45600,asmbl_45601,asmbl_45602 scaffold_5 - retained_intron 8538359-8538561 asmbl_45599 // Retained and Spliced Intron # retained_intron 8554846-8554950 (orient:-) max_ev_support = 2 # spliced_intron 8554846-8554950 (orient:-) max_ev_support = 1 scaffold_5 - intron 8554846-8554950 asmbl_45605 scaffold_5 - retained_intron 8554846-8554950 asmbl_45604 // Retained and Spliced Intron # retained_intron 8776863-8776953 (orient:-) max_ev_support = 2 # spliced_intron 8776863-8776953 (orient:-) max_ev_support = 2 scaffold_5 - intron 8776863-8776953 asmbl_45624 scaffold_5 - retained_intron 8776863-8776953 asmbl_45625 // Retained and Spliced Intron # retained_intron 9079063-9079449 (orient:-) max_ev_support = 1 # spliced_intron 9079063-9079449 (orient:-) max_ev_support = 3 scaffold_5 - intron 9079063-9079449 asmbl_45645 scaffold_5 - retained_intron 9079063-9079449 asmbl_45646 // Retained and Spliced Intron # retained_intron 9582795-9582912 (orient:-) max_ev_support = 2 # spliced_intron 9582795-9582912 (orient:-) max_ev_support = 2 scaffold_5 - intron 9582795-9582912 asmbl_45674,asmbl_45675,asmbl_45676 scaffold_5 - retained_intron 9582795-9582912 asmbl_45673 // Retained and Spliced Intron # retained_intron 9704092-9704702 (orient:-) max_ev_support = 2 # spliced_intron 9704092-9704702 (orient:-) max_ev_support = 1 scaffold_5 - intron 9704092-9704702 asmbl_45678 scaffold_5 - retained_intron 9704092-9704702 asmbl_45677 // Retained and Spliced Intron # retained_intron 9704095-9704464 (orient:-) max_ev_support = 2 # spliced_intron 9704095-9704464 (orient:-) max_ev_support = 1 scaffold_5 - intron 9704095-9704464 asmbl_45680 scaffold_5 - retained_intron 9704095-9704464 asmbl_45677,asmbl_45679 // Retained and Spliced Intron # retained_intron 9704594-9704702 (orient:-) max_ev_support = 2 # spliced_intron 9704594-9704702 (orient:-) max_ev_support = 1 scaffold_5 - intron 9704594-9704702 asmbl_45679 scaffold_5 - retained_intron 9704594-9704702 asmbl_45677,asmbl_45680 // Retained and Spliced Intron # retained_intron 9853206-9853277 (orient:-) max_ev_support = 1 # spliced_intron 9853206-9853277 (orient:-) max_ev_support = 1 scaffold_5 - intron 9853206-9853277 asmbl_45687 scaffold_5 - retained_intron 9853206-9853277 asmbl_45686 // Retained and Spliced Intron # retained_intron 9853379-9853480 (orient:-) max_ev_support = 3 # spliced_intron 9853379-9853480 (orient:-) max_ev_support = 1 scaffold_5 - intron 9853379-9853480 asmbl_45687 scaffold_5 - retained_intron 9853379-9853480 asmbl_45686 // Exon Skipping and Retention # skipped_exon 10145770-10146230 (orient:-) max_ev_support = 1 # retained_exon 10145887-10145990 (orient:-) max_ev_support = 3 scaffold_5 - retained_exons 10145887-10145990 asmbl_45696 scaffold_5 - intron_skips_exon 10145770-10146230 asmbl_45697 // Exon Skipping and Retention # skipped_exon 10183015-10183671 (orient:-) max_ev_support = 1 # retained_exon 10183252-10183263 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 10183252-10183263 asmbl_45699 scaffold_5 - intron_skips_exon 10183015-10183671 asmbl_45700 // Retained and Spliced Intron # retained_intron 10196215-10196313 (orient:-) max_ev_support = 1 # spliced_intron 10196215-10196313 (orient:-) max_ev_support = 2 scaffold_5 - intron 10196215-10196313 asmbl_45702,asmbl_45704,asmbl_45706,asmbl_45708 scaffold_5 - retained_intron 10196215-10196313 asmbl_45703 // Retained and Spliced Intron # retained_intron 10195447-10195577 (orient:-) max_ev_support = 1 # spliced_intron 10195447-10195577 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195447-10195577 asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45706,asmbl_45707,asmbl_45708 scaffold_5 - retained_intron 10195447-10195577 asmbl_45705,asmbl_45709 // Retained and Spliced Intron # retained_intron 10196467-10196618 (orient:-) max_ev_support = 1 # spliced_intron 10196467-10196618 (orient:-) max_ev_support = 2 scaffold_5 - intron 10196467-10196618 asmbl_45702,asmbl_45703,asmbl_45708 scaffold_5 - retained_intron 10196467-10196618 asmbl_45706 // Retained and Spliced Intron # retained_intron 10195750-10195849 (orient:-) max_ev_support = 1 # spliced_intron 10195750-10195849 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195750-10195849 asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45706,asmbl_45708,asmbl_45709 scaffold_5 - retained_intron 10195750-10195849 asmbl_45707 // Retained and Spliced Intron # retained_intron 10195272-10195388 (orient:-) max_ev_support = 1 # spliced_intron 10195272-10195388 (orient:-) max_ev_support = 2 scaffold_5 - intron 10195272-10195388 asmbl_45702,asmbl_45703,asmbl_45704,asmbl_45705,asmbl_45706,asmbl_45707 scaffold_5 - retained_intron 10195272-10195388 asmbl_45708,asmbl_45709 // Retained and Spliced Intron # retained_intron 10251374-10251506 (orient:-) max_ev_support = 2 # spliced_intron 10251374-10251506 (orient:-) max_ev_support = 2 scaffold_5 - intron 10251374-10251506 asmbl_45713,asmbl_45716 scaffold_5 - retained_intron 10251374-10251506 asmbl_45714,asmbl_45715 // Retained and Spliced Intron # retained_intron 10253401-10253602 (orient:-) max_ev_support = 2 # spliced_intron 10253401-10253602 (orient:-) max_ev_support = 2 scaffold_5 - intron 10253401-10253602 asmbl_45713,asmbl_45715 scaffold_5 - retained_intron 10253401-10253602 asmbl_45714,asmbl_45716 // Retained and Spliced Intron # retained_intron 10290152-10290283 (orient:-) max_ev_support = 1 # spliced_intron 10290152-10290283 (orient:-) max_ev_support = 2 scaffold_5 - intron 10290152-10290283 asmbl_45717 scaffold_5 - retained_intron 10290152-10290283 asmbl_45718 // Retained and Spliced Intron # retained_intron 10290524-10290823 (orient:-) max_ev_support = 1 # spliced_intron 10290524-10290823 (orient:-) max_ev_support = 2 scaffold_5 - intron 10290524-10290823 asmbl_45717 scaffold_5 - retained_intron 10290524-10290823 asmbl_45718 // Exon Skipping and Retention # skipped_exon 10297479-10297866 (orient:-) max_ev_support = 1 # retained_exon 10297615-10297744 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 10297615-10297744 asmbl_45719,asmbl_45722,asmbl_45724 scaffold_5 - intron_skips_exon 10297479-10297866 asmbl_45725 // Retained and Spliced Intron # retained_intron 10296210-10296333 (orient:-) max_ev_support = 1 # spliced_intron 10296210-10296333 (orient:-) max_ev_support = 2 scaffold_5 - intron 10296210-10296333 asmbl_45719,asmbl_45723,asmbl_45724,asmbl_45725 scaffold_5 - retained_intron 10296210-10296333 asmbl_45722 // Retained and Spliced Intron # retained_intron 10304680-10304767 (orient:-) max_ev_support = 2 # spliced_intron 10304680-10304767 (orient:-) max_ev_support = 4 scaffold_5 - intron 10304680-10304767 asmbl_45726,asmbl_45728 scaffold_5 - retained_intron 10304680-10304767 asmbl_45727 // Retained and Spliced Intron # retained_intron 10303566-10303683 (orient:-) max_ev_support = 1 # spliced_intron 10303566-10303683 (orient:-) max_ev_support = 4 scaffold_5 - intron 10303566-10303683 asmbl_45726,asmbl_45727 scaffold_5 - retained_intron 10303566-10303683 asmbl_45728 // Exon Skipping and Retention # skipped_exon 10381045-10381466 (orient:-) max_ev_support = 1 # retained_exon 10381188-10381380 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 10381188-10381380 asmbl_45734,asmbl_45735,asmbl_45737,asmbl_45739 scaffold_5 - intron_skips_exon 10381045-10381466 asmbl_45738 // Retained and Spliced Intron # retained_intron 10384008-10384137 (orient:-) max_ev_support = 1 # spliced_intron 10384008-10384137 (orient:-) max_ev_support = 1 scaffold_5 - intron 10384008-10384137 asmbl_45734 scaffold_5 - retained_intron 10384008-10384137 asmbl_45735 // Retained and Spliced Intron # retained_intron 10382183-10382274 (orient:-) max_ev_support = 1 # spliced_intron 10382183-10382274 (orient:-) max_ev_support = 1 scaffold_5 - intron 10382183-10382274 asmbl_45734,asmbl_45735 scaffold_5 - retained_intron 10382183-10382274 asmbl_45737,asmbl_45738,asmbl_45739 // Retained and Spliced Intron # retained_intron 10380174-10380270 (orient:-) max_ev_support = 1 # spliced_intron 10380174-10380270 (orient:-) max_ev_support = 1 scaffold_5 - intron 10380174-10380270 asmbl_45734,asmbl_45735,asmbl_45736,asmbl_45737,asmbl_45738 scaffold_5 - retained_intron 10380174-10380270 asmbl_45739 // Exon Skipping and Retention # skipped_exon 10419526-10422301 (orient:-) max_ev_support = 2 # retained_exon 10421235-10421280 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 10421235-10421280 asmbl_45741 scaffold_5 - intron_skips_exon 10419526-10422301 asmbl_45740 // Retained and Spliced Intron # retained_intron 10534403-10534505 (orient:-) max_ev_support = 2 # spliced_intron 10534403-10534505 (orient:-) max_ev_support = 2 scaffold_5 - intron 10534403-10534505 asmbl_45744 scaffold_5 - retained_intron 10534403-10534505 asmbl_45742 // Retained and Spliced Intron # retained_intron 10534403-10534511 (orient:-) max_ev_support = 2 # spliced_intron 10534403-10534511 (orient:-) max_ev_support = 1 scaffold_5 - intron 10534403-10534511 asmbl_45745 scaffold_5 - retained_intron 10534403-10534511 asmbl_45742 // Retained and Spliced Intron # retained_intron 10536961-10538269 (orient:-) max_ev_support = 2 # spliced_intron 10536961-10538269 (orient:-) max_ev_support = 2 scaffold_5 - intron 10536961-10538269 asmbl_45746,asmbl_45750,asmbl_45751 scaffold_5 - retained_intron 10536961-10538269 asmbl_45747,asmbl_45748,asmbl_45749 // Exon Skipping and Retention # skipped_exon 10889948-10890320 (orient:-) max_ev_support = 2 # retained_exon 10890168-10890244 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 10890168-10890244 asmbl_45766,asmbl_45770 scaffold_5 - intron_skips_exon 10889948-10890320 asmbl_45767,asmbl_45769 // Retained and Spliced Intron # retained_intron 11016319-11016635 (orient:-) max_ev_support = 2 # spliced_intron 11016319-11016635 (orient:-) max_ev_support = 1 scaffold_5 - intron 11016319-11016635 asmbl_45781 scaffold_5 - retained_intron 11016319-11016635 asmbl_45780 // Retained and Spliced Intron # retained_intron 11434446-11434524 (orient:-) max_ev_support = 1 # spliced_intron 11434446-11434524 (orient:-) max_ev_support = 2 scaffold_5 - intron 11434446-11434524 asmbl_45791 scaffold_5 - retained_intron 11434446-11434524 asmbl_45792 // Exon Skipping and Retention # skipped_exon 11630266-11631086 (orient:-) max_ev_support = 1 # retained_exon 11630429-11630545 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 11630429-11630545 asmbl_45800 scaffold_5 - intron_skips_exon 11630266-11631086 asmbl_45799 // Retained and Spliced Intron # retained_intron 11630266-11630428 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11630428 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11630428 asmbl_45800 scaffold_5 - retained_intron 11630266-11630428 asmbl_45801,asmbl_45803 // Retained and Spliced Intron # retained_intron 11630266-11630481 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11630481 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11630481 asmbl_45802 scaffold_5 - retained_intron 11630266-11630481 asmbl_45801,asmbl_45803 // Retained and Spliced Intron # retained_intron 11630266-11631086 (orient:-) max_ev_support = 1 # spliced_intron 11630266-11631086 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630266-11631086 asmbl_45799 scaffold_5 - retained_intron 11630266-11631086 asmbl_45801,asmbl_45803 // Retained and Spliced Intron # retained_intron 11630546-11631086 (orient:-) max_ev_support = 1 # spliced_intron 11630546-11631086 (orient:-) max_ev_support = 1 scaffold_5 - intron 11630546-11631086 asmbl_45800,asmbl_45802 scaffold_5 - retained_intron 11630546-11631086 asmbl_45801,asmbl_45803 // Exon Skipping and Retention # skipped_exon 11990788-11991389 (orient:-) max_ev_support = 1 # retained_exon 11990896-11990961 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 11990896-11990961 asmbl_45811,asmbl_45812,asmbl_45813,asmbl_45816 scaffold_5 - intron_skips_exon 11990788-11991389 asmbl_45815 // Retained and Spliced Intron # retained_intron 11991739-11992075 (orient:-) max_ev_support = 2 # spliced_intron 11991739-11992075 (orient:-) max_ev_support = 1 scaffold_5 - intron 11991739-11992075 asmbl_45816 scaffold_5 - retained_intron 11991739-11992075 asmbl_45811,asmbl_45813 // Retained and Spliced Intron # retained_intron 11991739-11992176 (orient:-) max_ev_support = 2 # spliced_intron 11991739-11992176 (orient:-) max_ev_support = 1 scaffold_5 - intron 11991739-11992176 asmbl_45815 scaffold_5 - retained_intron 11991739-11992176 asmbl_45811,asmbl_45813 // Exon Skipping and Retention # skipped_exon 11991739-11993287 (orient:-) max_ev_support = 2 # retained_exon 11993058-11993127 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 11993058-11993127 asmbl_45811 scaffold_5 - intron_skips_exon 11991739-11993287 asmbl_45812 // Retained and Spliced Intron # retained_intron 11991739-11993287 (orient:-) max_ev_support = 1 # spliced_intron 11991739-11993287 (orient:-) max_ev_support = 2 scaffold_5 - intron 11991739-11993287 asmbl_45812 scaffold_5 - retained_intron 11991739-11993287 asmbl_45813 // Retained and Spliced Intron # retained_intron 11992233-11993057 (orient:-) max_ev_support = 1 # spliced_intron 11992233-11993057 (orient:-) max_ev_support = 2 scaffold_5 - intron 11992233-11993057 asmbl_45811,asmbl_45815,asmbl_45816 scaffold_5 - retained_intron 11992233-11993057 asmbl_45813 // Retained and Spliced Intron # retained_intron 11993128-11993287 (orient:-) max_ev_support = 1 # spliced_intron 11993128-11993287 (orient:-) max_ev_support = 2 scaffold_5 - intron 11993128-11993287 asmbl_45811,asmbl_45815,asmbl_45816 scaffold_5 - retained_intron 11993128-11993287 asmbl_45813 // Retained and Spliced Intron # retained_intron 11990962-11991389 (orient:-) max_ev_support = 1 # spliced_intron 11990962-11991389 (orient:-) max_ev_support = 2 scaffold_5 - intron 11990962-11991389 asmbl_45811,asmbl_45812,asmbl_45813,asmbl_45816 scaffold_5 - retained_intron 11990962-11991389 asmbl_45814 // Retained and Spliced Intron # retained_intron 12258749-12258866 (orient:-) max_ev_support = 2 # spliced_intron 12258749-12258866 (orient:-) max_ev_support = 2 scaffold_5 - intron 12258749-12258866 asmbl_45823 scaffold_5 - retained_intron 12258749-12258866 asmbl_45822 // Exon Skipping and Retention # skipped_exon 12532379-12533784 (orient:-) max_ev_support = 1 # retained_exon 12532513-12533674 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 12532513-12532710,12532805-12532926,12533049-12533222,12533309-12533390,12533533-12533674 asmbl_45843,asmbl_45844 scaffold_5 - intron_skips_exon 12532379-12533784 asmbl_45845 // Retained and Spliced Intron # retained_intron 12573137-12573215 (orient:-) max_ev_support = 1 # spliced_intron 12573137-12573215 (orient:-) max_ev_support = 2 scaffold_5 - intron 12573137-12573215 asmbl_45854 scaffold_5 - retained_intron 12573137-12573215 asmbl_45855 // Exon Skipping and Retention # skipped_exon 12728011-12729165 (orient:-) max_ev_support = 1 # retained_exon 12728581-12728691 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 12728581-12728691 asmbl_45856 scaffold_5 - intron_skips_exon 12728011-12729165 asmbl_45857 // Retained and Spliced Intron # retained_intron 12755181-12755356 (orient:-) max_ev_support = 3 # spliced_intron 12755181-12755356 (orient:-) max_ev_support = 2 scaffold_5 - intron 12755181-12755356 asmbl_45864 scaffold_5 - retained_intron 12755181-12755356 asmbl_45863 // Retained and Spliced Intron # retained_intron 12915260-12915370 (orient:-) max_ev_support = 1 # spliced_intron 12915260-12915370 (orient:-) max_ev_support = 2 scaffold_5 - intron 12915260-12915370 asmbl_45871,asmbl_45872 scaffold_5 - retained_intron 12915260-12915370 asmbl_45873 // Retained and Spliced Intron # retained_intron 12958540-12958648 (orient:-) max_ev_support = 1 # spliced_intron 12958540-12958648 (orient:-) max_ev_support = 1 scaffold_5 - intron 12958540-12958648 asmbl_45882 scaffold_5 - retained_intron 12958540-12958648 asmbl_45881 // Retained and Spliced Intron # retained_intron 13316127-13316220 (orient:-) max_ev_support = 1 # spliced_intron 13316127-13316220 (orient:-) max_ev_support = 1 scaffold_5 - intron 13316127-13316220 asmbl_45915,asmbl_45918,asmbl_45919,asmbl_45920 scaffold_5 - retained_intron 13316127-13316220 asmbl_45916,asmbl_45917 // Retained and Spliced Intron # retained_intron 13316252-13316346 (orient:-) max_ev_support = 1 # spliced_intron 13316252-13316346 (orient:-) max_ev_support = 1 scaffold_5 - intron 13316252-13316346 asmbl_45915,asmbl_45919,asmbl_45920 scaffold_5 - retained_intron 13316252-13316346 asmbl_45916,asmbl_45917,asmbl_45918 // Exon Skipping and Retention # skipped_exon 13660264-13661299 (orient:-) max_ev_support = 2 # retained_exon 13660978-13661026 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 13660978-13661026 asmbl_45924 scaffold_5 - intron_skips_exon 13660264-13661299 asmbl_45925,asmbl_45928 // Retained and Spliced Intron # retained_intron 13664802-13665247 (orient:-) max_ev_support = 1 # spliced_intron 13664802-13665247 (orient:-) max_ev_support = 2 scaffold_5 - intron 13664802-13665247 asmbl_45924,asmbl_45925 scaffold_5 - retained_intron 13664802-13665247 asmbl_45928 // Exon Skipping and Retention # skipped_exon 13806575-13808028 (orient:-) max_ev_support = 1 # retained_exon 13807787-13807804 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 13807787-13807804 asmbl_45938,asmbl_45941 scaffold_5 - intron_skips_exon 13806575-13808028 asmbl_45943,asmbl_45944 // Exon Skipping and Retention # skipped_exon 13801958-13803444 (orient:-) max_ev_support = 2 # retained_exon 13802962-13803018 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 13802962-13803018 asmbl_45941,asmbl_45943,asmbl_45944 scaffold_5 - intron_skips_exon 13801958-13803444 asmbl_45938 // Retained and Spliced Intron # retained_intron 13825214-13825331 (orient:-) max_ev_support = 1 # spliced_intron 13825214-13825331 (orient:-) max_ev_support = 3 scaffold_5 - intron 13825214-13825331 asmbl_45947 scaffold_5 - retained_intron 13825214-13825331 asmbl_45948 // Retained and Spliced Intron # retained_intron 14124559-14124669 (orient:-) max_ev_support = 1 # spliced_intron 14124559-14124669 (orient:-) max_ev_support = 1 scaffold_5 - intron 14124559-14124669 asmbl_45968 scaffold_5 - retained_intron 14124559-14124669 asmbl_45969 // Retained and Spliced Intron # retained_intron 14124759-14124862 (orient:-) max_ev_support = 1 # spliced_intron 14124759-14124862 (orient:-) max_ev_support = 1 scaffold_5 - intron 14124759-14124862 asmbl_45968 scaffold_5 - retained_intron 14124759-14124862 asmbl_45969 // Retained and Spliced Intron # retained_intron 14125028-14125150 (orient:-) max_ev_support = 1 # spliced_intron 14125028-14125150 (orient:-) max_ev_support = 1 scaffold_5 - intron 14125028-14125150 asmbl_45968 scaffold_5 - retained_intron 14125028-14125150 asmbl_45969 // Retained and Spliced Intron # retained_intron 14126415-14126522 (orient:-) max_ev_support = 1 # spliced_intron 14126415-14126522 (orient:-) max_ev_support = 1 scaffold_5 - intron 14126415-14126522 asmbl_45968 scaffold_5 - retained_intron 14126415-14126522 asmbl_45970 // Retained and Spliced Intron # retained_intron 14569065-14569227 (orient:-) max_ev_support = 1 # spliced_intron 14569065-14569227 (orient:-) max_ev_support = 1 scaffold_5 - intron 14569065-14569227 asmbl_45982 scaffold_5 - retained_intron 14569065-14569227 asmbl_45979 // Retained and Spliced Intron # retained_intron 14569065-14569231 (orient:-) max_ev_support = 1 # spliced_intron 14569065-14569231 (orient:-) max_ev_support = 2 scaffold_5 - intron 14569065-14569231 asmbl_45978 scaffold_5 - retained_intron 14569065-14569231 asmbl_45979 // Retained and Spliced Intron # retained_intron 14569299-14569509 (orient:-) max_ev_support = 1 # spliced_intron 14569299-14569509 (orient:-) max_ev_support = 2 scaffold_5 - intron 14569299-14569509 asmbl_45978,asmbl_45982 scaffold_5 - retained_intron 14569299-14569509 asmbl_45979 // Retained and Spliced Intron # retained_intron 14568812-14568989 (orient:-) max_ev_support = 1 # spliced_intron 14568812-14568989 (orient:-) max_ev_support = 2 scaffold_5 - intron 14568812-14568989 asmbl_45978,asmbl_45979,asmbl_45982 scaffold_5 - retained_intron 14568812-14568989 asmbl_45980 // Retained and Spliced Intron # retained_intron 14601535-14601964 (orient:-) max_ev_support = 3 # spliced_intron 14601535-14601964 (orient:-) max_ev_support = 2 scaffold_5 - intron 14601535-14601964 asmbl_45985 scaffold_5 - retained_intron 14601535-14601964 asmbl_45984 // Retained and Spliced Intron # retained_intron 14731114-14731222 (orient:-) max_ev_support = 2 # spliced_intron 14731114-14731222 (orient:-) max_ev_support = 2 scaffold_5 - intron 14731114-14731222 asmbl_45994 scaffold_5 - retained_intron 14731114-14731222 asmbl_45995 // Retained and Spliced Intron # retained_intron 14732294-14732395 (orient:-) max_ev_support = 2 # spliced_intron 14732294-14732395 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732294-14732395 asmbl_45994,asmbl_45997 scaffold_5 - retained_intron 14732294-14732395 asmbl_45996 // Retained and Spliced Intron # retained_intron 14732517-14732623 (orient:-) max_ev_support = 2 # spliced_intron 14732517-14732623 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732517-14732623 asmbl_45994 scaffold_5 - retained_intron 14732517-14732623 asmbl_45996,asmbl_45997 // Retained and Spliced Intron # retained_intron 14731563-14731696 (orient:-) max_ev_support = 1 # spliced_intron 14731563-14731696 (orient:-) max_ev_support = 2 scaffold_5 - intron 14731563-14731696 asmbl_45994 scaffold_5 - retained_intron 14731563-14731696 asmbl_45997 // Retained and Spliced Intron # retained_intron 14732107-14732244 (orient:-) max_ev_support = 1 # spliced_intron 14732107-14732244 (orient:-) max_ev_support = 2 scaffold_5 - intron 14732107-14732244 asmbl_45994 scaffold_5 - retained_intron 14732107-14732244 asmbl_45997 // Retained and Spliced Intron # retained_intron 15031404-15031492 (orient:-) max_ev_support = 1 # spliced_intron 15031404-15031492 (orient:-) max_ev_support = 2 scaffold_5 - intron 15031404-15031492 asmbl_46012 scaffold_5 - retained_intron 15031404-15031492 asmbl_46013 // Retained and Spliced Intron # retained_intron 15043048-15043268 (orient:-) max_ev_support = 2 # spliced_intron 15043048-15043268 (orient:-) max_ev_support = 2 scaffold_5 - intron 15043048-15043268 asmbl_46018 scaffold_5 - retained_intron 15043048-15043268 asmbl_46014,asmbl_46016,asmbl_46020 // Retained and Spliced Intron # retained_intron 15043048-15043289 (orient:-) max_ev_support = 2 # spliced_intron 15043048-15043289 (orient:-) max_ev_support = 2 scaffold_5 - intron 15043048-15043289 asmbl_46015,asmbl_46019 scaffold_5 - retained_intron 15043048-15043289 asmbl_46014,asmbl_46016,asmbl_46020 // Exon Skipping and Retention # skipped_exon 15044032-15044293 (orient:-) max_ev_support = 1 # retained_exon 15044158-15044202 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15044158-15044202 asmbl_46015 scaffold_5 - intron_skips_exon 15044032-15044293 asmbl_46014,asmbl_46022 // Exon Skipping and Retention # skipped_exon 15044005-15044293 (orient:-) max_ev_support = 2 # retained_exon 15044158-15044202 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15044158-15044202 asmbl_46015 scaffold_5 - intron_skips_exon 15044005-15044293 asmbl_46017 // Exon Skipping and Retention # skipped_exon 15044005-15044293 (orient:-) max_ev_support = 2 # retained_exon 15044119-15044202 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15044119-15044202 asmbl_46018,asmbl_46020,asmbl_46021 scaffold_5 - intron_skips_exon 15044005-15044293 asmbl_46017 // Exon Skipping and Retention # skipped_exon 15044032-15044293 (orient:-) max_ev_support = 1 # retained_exon 15044119-15044202 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15044119-15044202 asmbl_46018,asmbl_46020,asmbl_46021 scaffold_5 - intron_skips_exon 15044032-15044293 asmbl_46014,asmbl_46022 // Retained and Spliced Intron # retained_intron 15044005-15044118 (orient:-) max_ev_support = 1 # spliced_intron 15044005-15044118 (orient:-) max_ev_support = 1 scaffold_5 - intron 15044005-15044118 asmbl_46016,asmbl_46018 scaffold_5 - retained_intron 15044005-15044118 asmbl_46019 // Retained and Spliced Intron # retained_intron 15044032-15044118 (orient:-) max_ev_support = 1 # spliced_intron 15044032-15044118 (orient:-) max_ev_support = 1 scaffold_5 - intron 15044032-15044118 asmbl_46020,asmbl_46021 scaffold_5 - retained_intron 15044032-15044118 asmbl_46019 // Retained and Spliced Intron # retained_intron 15044032-15044157 (orient:-) max_ev_support = 1 # spliced_intron 15044032-15044157 (orient:-) max_ev_support = 1 scaffold_5 - intron 15044032-15044157 asmbl_46015 scaffold_5 - retained_intron 15044032-15044157 asmbl_46019 // Retained and Spliced Intron # retained_intron 15041706-15041804 (orient:-) max_ev_support = 2 # spliced_intron 15041706-15041804 (orient:-) max_ev_support = 2 scaffold_5 - intron 15041706-15041804 asmbl_46021,asmbl_46022,asmbl_46024 scaffold_5 - retained_intron 15041706-15041804 asmbl_46023 // Retained and Spliced Intron # retained_intron 15285942-15286100 (orient:-) max_ev_support = 3 # spliced_intron 15285942-15286100 (orient:-) max_ev_support = 2 scaffold_5 - intron 15285942-15286100 asmbl_46040 scaffold_5 - retained_intron 15285942-15286100 asmbl_46039 // Exon Skipping and Retention # skipped_exon 15416648-15419286 (orient:-) max_ev_support = 2 # retained_exon 15418254-15418370 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15418254-15418370 asmbl_46047 scaffold_5 - intron_skips_exon 15416648-15419286 asmbl_46046 // Retained and Spliced Intron # retained_intron 15463089-15463201 (orient:-) max_ev_support = 2 # spliced_intron 15463089-15463201 (orient:-) max_ev_support = 1 scaffold_5 - intron 15463089-15463201 asmbl_46060 scaffold_5 - retained_intron 15463089-15463201 asmbl_46057,asmbl_46059 // Retained and Spliced Intron # retained_intron 15462792-15463060 (orient:-) max_ev_support = 2 # spliced_intron 15462792-15463060 (orient:-) max_ev_support = 2 scaffold_5 - intron 15462792-15463060 asmbl_46057,asmbl_46059,asmbl_46060 scaffold_5 - retained_intron 15462792-15463060 asmbl_46058 // Retained and Spliced Intron # retained_intron 15462675-15462768 (orient:-) max_ev_support = 1 # spliced_intron 15462675-15462768 (orient:-) max_ev_support = 2 scaffold_5 - intron 15462675-15462768 asmbl_46057,asmbl_46060 scaffold_5 - retained_intron 15462675-15462768 asmbl_46059 // Retained and Spliced Intron # retained_intron 15504736-15505054 (orient:-) max_ev_support = 2 # spliced_intron 15504736-15505054 (orient:-) max_ev_support = 1 scaffold_5 - intron 15504736-15505054 asmbl_46064 scaffold_5 - retained_intron 15504736-15505054 asmbl_46062,asmbl_46063 // Exon Skipping and Retention # skipped_exon 15506286-15508000 (orient:-) max_ev_support = 2 # retained_exon 15506385-15507043 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15506385-15506630,15506751-15507043 asmbl_46062,asmbl_46065 scaffold_5 - intron_skips_exon 15506286-15508000 asmbl_46063,asmbl_46064 // Retained and Spliced Intron # retained_intron 15521839-15522081 (orient:-) max_ev_support = 2 # spliced_intron 15521839-15522081 (orient:-) max_ev_support = 2 scaffold_5 - intron 15521839-15522081 asmbl_46067 scaffold_5 - retained_intron 15521839-15522081 asmbl_46068 // Retained and Spliced Intron # retained_intron 15513154-15513296 (orient:-) max_ev_support = 1 # spliced_intron 15513154-15513296 (orient:-) max_ev_support = 2 scaffold_5 - intron 15513154-15513296 asmbl_46067,asmbl_46068 scaffold_5 - retained_intron 15513154-15513296 asmbl_46069 // Retained and Spliced Intron # retained_intron 15528913-15529261 (orient:-) max_ev_support = 3 # spliced_intron 15528913-15529261 (orient:-) max_ev_support = 1 scaffold_5 - intron 15528913-15529261 asmbl_46074 scaffold_5 - retained_intron 15528913-15529261 asmbl_46073 // Retained and Spliced Intron # retained_intron 15539705-15539796 (orient:-) max_ev_support = 1 # spliced_intron 15539705-15539796 (orient:-) max_ev_support = 1 scaffold_5 - intron 15539705-15539796 asmbl_46075 scaffold_5 - retained_intron 15539705-15539796 asmbl_46076 // Exon Skipping and Retention # skipped_exon 15547083-15548192 (orient:-) max_ev_support = 2 # retained_exon 15547270-15547539 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 15547270-15547302,15547466-15547539 asmbl_46080 scaffold_5 - intron_skips_exon 15547083-15548192 asmbl_46077,asmbl_46079 // Retained and Spliced Intron # retained_intron 15560627-15561046 (orient:-) max_ev_support = 2 # spliced_intron 15560627-15561046 (orient:-) max_ev_support = 1 scaffold_5 - intron 15560627-15561046 asmbl_46085 scaffold_5 - retained_intron 15560627-15561046 asmbl_46084,asmbl_46086 // Exon Skipping and Retention # skipped_exon 15627804-15629419 (orient:-) max_ev_support = 2 # retained_exon 15628455-15628481 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 15628455-15628481 asmbl_46091 scaffold_5 - intron_skips_exon 15627804-15629419 asmbl_46092 // Retained and Spliced Intron # retained_intron 16018359-16018649 (orient:-) max_ev_support = 3 # spliced_intron 16018359-16018649 (orient:-) max_ev_support = 2 scaffold_5 - intron 16018359-16018649 asmbl_46120 scaffold_5 - retained_intron 16018359-16018649 asmbl_46118 // Exon Skipping and Retention # skipped_exon 16018055-16018649 (orient:-) max_ev_support = 1 # retained_exon 16018236-16018358 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16018236-16018358 asmbl_46120 scaffold_5 - intron_skips_exon 16018055-16018649 asmbl_46121 // Exon Skipping and Retention # skipped_exon 16518924-16519444 (orient:-) max_ev_support = 2 # retained_exon 16519193-16519220 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16519193-16519220 asmbl_46128 scaffold_5 - intron_skips_exon 16518924-16519444 asmbl_46129 // Retained and Spliced Intron # retained_intron 16519221-16519444 (orient:-) max_ev_support = 1 # spliced_intron 16519221-16519444 (orient:-) max_ev_support = 2 scaffold_5 - intron 16519221-16519444 asmbl_46128 scaffold_5 - retained_intron 16519221-16519444 asmbl_46130 // Retained and Spliced Intron # retained_intron 16519694-16519798 (orient:-) max_ev_support = 1 # spliced_intron 16519694-16519798 (orient:-) max_ev_support = 2 scaffold_5 - intron 16519694-16519798 asmbl_46128,asmbl_46129 scaffold_5 - retained_intron 16519694-16519798 asmbl_46130 // Retained and Spliced Intron # retained_intron 16583212-16583590 (orient:-) max_ev_support = 1 # spliced_intron 16583212-16583590 (orient:-) max_ev_support = 1 scaffold_5 - intron 16583212-16583590 asmbl_46138 scaffold_5 - retained_intron 16583212-16583590 asmbl_46135,asmbl_46136,asmbl_46137 // Exon Skipping and Retention # skipped_exon 16843967-16846235 (orient:-) max_ev_support = 2 # retained_exon 16844385-16844647 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 16844385-16844647 asmbl_46160 scaffold_5 - intron_skips_exon 16843967-16846235 asmbl_46158 // Retained and Spliced Intron # retained_intron 16937471-16937586 (orient:-) max_ev_support = 1 # spliced_intron 16937471-16937586 (orient:-) max_ev_support = 2 scaffold_5 - intron 16937471-16937586 asmbl_46162,asmbl_46163 scaffold_5 - retained_intron 16937471-16937586 asmbl_46164 // Retained and Spliced Intron # retained_intron 17210337-17210461 (orient:-) max_ev_support = 1 # spliced_intron 17210337-17210461 (orient:-) max_ev_support = 2 scaffold_5 - intron 17210337-17210461 asmbl_46171,asmbl_46173,asmbl_46174 scaffold_5 - retained_intron 17210337-17210461 asmbl_46172,asmbl_46175 // Retained and Spliced Intron # retained_intron 17210617-17210897 (orient:-) max_ev_support = 1 # spliced_intron 17210617-17210897 (orient:-) max_ev_support = 2 scaffold_5 - intron 17210617-17210897 asmbl_46171,asmbl_46172,asmbl_46174 scaffold_5 - retained_intron 17210617-17210897 asmbl_46173,asmbl_46175 // Retained and Spliced Intron # retained_intron 17368979-17369287 (orient:-) max_ev_support = 3 # spliced_intron 17368979-17369287 (orient:-) max_ev_support = 2 scaffold_5 - intron 17368979-17369287 asmbl_46178 scaffold_5 - retained_intron 17368979-17369287 asmbl_46177 // Exon Skipping and Retention # skipped_exon 18391820-18392095 (orient:-) max_ev_support = 2 # retained_exon 18391919-18391994 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 18391919-18391994 asmbl_46213 scaffold_5 - intron_skips_exon 18391820-18392095 asmbl_46212 // Retained and Spliced Intron # retained_intron 18514607-18514706 (orient:-) max_ev_support = 2 # spliced_intron 18514607-18514706 (orient:-) max_ev_support = 2 scaffold_5 - intron 18514607-18514706 asmbl_46219 scaffold_5 - retained_intron 18514607-18514706 asmbl_46218 // Retained and Spliced Intron # retained_intron 18696880-18697441 (orient:-) max_ev_support = 1 # spliced_intron 18696880-18697441 (orient:-) max_ev_support = 1 scaffold_5 - intron 18696880-18697441 asmbl_46233 scaffold_5 - retained_intron 18696880-18697441 asmbl_46229,asmbl_46232 // Retained and Spliced Intron # retained_intron 18713113-18713290 (orient:-) max_ev_support = 3 # spliced_intron 18713113-18713290 (orient:-) max_ev_support = 3 scaffold_5 - intron 18713113-18713290 asmbl_46242 scaffold_5 - retained_intron 18713113-18713290 asmbl_46241 // Retained and Spliced Intron # retained_intron 18758085-18758276 (orient:-) max_ev_support = 1 # spliced_intron 18758085-18758276 (orient:-) max_ev_support = 2 scaffold_5 - intron 18758085-18758276 asmbl_46249 scaffold_5 - retained_intron 18758085-18758276 asmbl_46250,asmbl_46251 // Retained and Spliced Intron # retained_intron 18758399-18758711 (orient:-) max_ev_support = 1 # spliced_intron 18758399-18758711 (orient:-) max_ev_support = 2 scaffold_5 - intron 18758399-18758711 asmbl_46249 scaffold_5 - retained_intron 18758399-18758711 asmbl_46251 // Retained and Spliced Intron # retained_intron 18758460-18758711 (orient:-) max_ev_support = 1 # spliced_intron 18758460-18758711 (orient:-) max_ev_support = 1 scaffold_5 - intron 18758460-18758711 asmbl_46250 scaffold_5 - retained_intron 18758460-18758711 asmbl_46251 // Exon Skipping and Retention # skipped_exon 19031567-19031895 (orient:-) max_ev_support = 3 # retained_exon 19031664-19031726 (orient:-) max_ev_support = 2 scaffold_5 - retained_exons 19031664-19031726 asmbl_46260,asmbl_46269 scaffold_5 - intron_skips_exon 19031567-19031895 asmbl_46259,asmbl_46261,asmbl_46262,asmbl_46267 // Retained and Spliced Intron # retained_intron 19029108-19029499 (orient:-) max_ev_support = 2 # spliced_intron 19029108-19029499 (orient:-) max_ev_support = 1 scaffold_5 - intron 19029108-19029499 asmbl_46265,asmbl_46267 scaffold_5 - retained_intron 19029108-19029499 asmbl_46263 // Retained and Spliced Intron # retained_intron 19031567-19031663 (orient:-) max_ev_support = 2 # spliced_intron 19031567-19031663 (orient:-) max_ev_support = 2 scaffold_5 - intron 19031567-19031663 asmbl_46260,asmbl_46269 scaffold_5 - retained_intron 19031567-19031663 asmbl_46264 // Retained and Spliced Intron # retained_intron 19031567-19031895 (orient:-) max_ev_support = 2 # spliced_intron 19031567-19031895 (orient:-) max_ev_support = 3 scaffold_5 - intron 19031567-19031895 asmbl_46259,asmbl_46261,asmbl_46262,asmbl_46267 scaffold_5 - retained_intron 19031567-19031895 asmbl_46264 // Retained and Spliced Intron # retained_intron 19031727-19031895 (orient:-) max_ev_support = 2 # spliced_intron 19031727-19031895 (orient:-) max_ev_support = 2 scaffold_5 - intron 19031727-19031895 asmbl_46260,asmbl_46269 scaffold_5 - retained_intron 19031727-19031895 asmbl_46264 // Exon Skipping and Retention # skipped_exon 19029108-19031503 (orient:-) max_ev_support = 2 # retained_exon 19029500-19029511 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 19029500-19029511 asmbl_46267 scaffold_5 - intron_skips_exon 19029108-19031503 asmbl_46259,asmbl_46260 // Exon Skipping and Retention # skipped_exon 19029102-19031503 (orient:-) max_ev_support = 1 # retained_exon 19029500-19029511 (orient:-) max_ev_support = 1 scaffold_5 - retained_exons 19029500-19029511 asmbl_46267 scaffold_5 - intron_skips_exon 19029102-19031503 asmbl_46261,asmbl_46269 // Retained and Spliced Intron # retained_intron 19145546-19145630 (orient:-) max_ev_support = 2 # spliced_intron 19145546-19145630 (orient:-) max_ev_support = 2 scaffold_5 - intron 19145546-19145630 asmbl_46270,asmbl_46272 scaffold_5 - retained_intron 19145546-19145630 asmbl_46271 // Retained and Spliced Intron # retained_intron 19351052-19351309 (orient:-) max_ev_support = 1 # spliced_intron 19351052-19351309 (orient:-) max_ev_support = 2 scaffold_5 - intron 19351052-19351309 asmbl_46274,asmbl_46275 scaffold_5 - retained_intron 19351052-19351309 asmbl_46276 // Retained and Spliced Intron # retained_intron 19351640-19352041 (orient:-) max_ev_support = 1 # spliced_intron 19351640-19352041 (orient:-) max_ev_support = 2 scaffold_5 - intron 19351640-19352041 asmbl_46274,asmbl_46275 scaffold_5 - retained_intron 19351640-19352041 asmbl_46276 // Retained and Spliced Intron # retained_intron 19371162-19371247 (orient:-) max_ev_support = 3 # spliced_intron 19371162-19371247 (orient:-) max_ev_support = 3 scaffold_5 - intron 19371162-19371247 asmbl_46281,asmbl_46283 scaffold_5 - retained_intron 19371162-19371247 asmbl_46280 // Retained and Spliced Intron # retained_intron 19374068-19374221 (orient:-) max_ev_support = 2 # spliced_intron 19374068-19374221 (orient:-) max_ev_support = 3 scaffold_5 - intron 19374068-19374221 asmbl_46281,asmbl_46284 scaffold_5 - retained_intron 19374068-19374221 asmbl_46282 // Retained and Spliced Intron # retained_intron 19444958-19445069 (orient:-) max_ev_support = 3 # spliced_intron 19444958-19445069 (orient:-) max_ev_support = 3 scaffold_5 - intron 19444958-19445069 asmbl_46289 scaffold_5 - retained_intron 19444958-19445069 asmbl_46288 // Retained and Spliced Intron # retained_intron 19463375-19463478 (orient:-) max_ev_support = 1 # spliced_intron 19463375-19463478 (orient:-) max_ev_support = 1 scaffold_5 - intron 19463375-19463478 asmbl_46293 scaffold_5 - retained_intron 19463375-19463478 asmbl_46294 // Retained and Spliced Intron # retained_intron 2254-2461 (orient:+) max_ev_support = 2 # spliced_intron 2254-2461 (orient:+) max_ev_support = 1 scaffold_500 + intron 2254-2461 asmbl_46446,asmbl_46450 scaffold_500 + retained_intron 2254-2461 asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46448,asmbl_46449 // Retained and Spliced Intron # retained_intron 2522-2745 (orient:+) max_ev_support = 2 # spliced_intron 2522-2745 (orient:+) max_ev_support = 2 scaffold_500 + intron 2522-2745 asmbl_46446,asmbl_46448,asmbl_46450 scaffold_500 + retained_intron 2522-2745 asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46449 // Retained and Spliced Intron # retained_intron 2902-3472 (orient:+) max_ev_support = 6 # spliced_intron 2902-3472 (orient:+) max_ev_support = 4 scaffold_500 + intron 2902-3472 asmbl_46448,asmbl_46449,asmbl_46450 scaffold_500 + retained_intron 2902-3472 asmbl_46443,asmbl_46444,asmbl_46445,asmbl_46446,asmbl_46447 // Retained and Spliced Intron # retained_intron 2115-2216 (orient:+) max_ev_support = 2 # spliced_intron 2115-2216 (orient:+) max_ev_support = 2 scaffold_500 + intron 2115-2216 asmbl_46443,asmbl_46446,asmbl_46450 scaffold_500 + retained_intron 2115-2216 asmbl_46444,asmbl_46445,asmbl_46447,asmbl_46448,asmbl_46449 // Retained and Spliced Intron # retained_intron 746-1074 (orient:+) max_ev_support = 1 # spliced_intron 746-1074 (orient:+) max_ev_support = 3 scaffold_500 + intron 746-1074 asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450,asmbl_46452 scaffold_500 + retained_intron 746-1074 asmbl_46445,asmbl_46447,asmbl_46451 // Retained and Spliced Intron # retained_intron 1334-1449 (orient:+) max_ev_support = 1 # spliced_intron 1334-1449 (orient:+) max_ev_support = 1 scaffold_500 + intron 1334-1449 asmbl_46447,asmbl_46452 scaffold_500 + retained_intron 1334-1449 asmbl_46445,asmbl_46451 // Retained and Spliced Intron # retained_intron 1334-1625 (orient:+) max_ev_support = 1 # spliced_intron 1334-1625 (orient:+) max_ev_support = 3 scaffold_500 + intron 1334-1625 asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450 scaffold_500 + retained_intron 1334-1625 asmbl_46445 // Retained and Spliced Intron # retained_intron 1484-1625 (orient:+) max_ev_support = 1 # spliced_intron 1484-1625 (orient:+) max_ev_support = 1 scaffold_500 + intron 1484-1625 asmbl_46451,asmbl_46452 scaffold_500 + retained_intron 1484-1625 asmbl_46445,asmbl_46447 // Exon Skipping and Retention # skipped_exon 1334-1625 (orient:+) max_ev_support = 3 # retained_exon 1450-1483 (orient:+) max_ev_support = 1 scaffold_500 + retained_exons 1450-1483 asmbl_46452 scaffold_500 + intron_skips_exon 1334-1625 asmbl_46443,asmbl_46444,asmbl_46446,asmbl_46448,asmbl_46449,asmbl_46450 // Retained and Spliced Intron # retained_intron 2659-3028 (orient:+) max_ev_support = 1 # spliced_intron 2659-3028 (orient:+) max_ev_support = 2 scaffold_506 + intron 2659-3028 asmbl_46455,asmbl_46458 scaffold_506 + retained_intron 2659-3028 asmbl_46457 // Retained and Spliced Intron # retained_intron 2749-3028 (orient:+) max_ev_support = 1 # spliced_intron 2749-3028 (orient:+) max_ev_support = 2 scaffold_506 + intron 2749-3028 asmbl_46456 scaffold_506 + retained_intron 2749-3028 asmbl_46457 // Retained and Spliced Intron # retained_intron 3010-3063 (orient:-) max_ev_support = 2 # spliced_intron 3010-3063 (orient:-) max_ev_support = 1 scaffold_510 - intron 3010-3063 asmbl_46465 scaffold_510 - retained_intron 3010-3063 asmbl_46464,asmbl_46466 // Retained and Spliced Intron # retained_intron 3172-3387 (orient:-) max_ev_support = 2 # spliced_intron 3172-3387 (orient:-) max_ev_support = 1 scaffold_510 - intron 3172-3387 asmbl_46466 scaffold_510 - retained_intron 3172-3387 asmbl_46464 // Retained and Spliced Intron # retained_intron 3172-3441 (orient:-) max_ev_support = 2 # spliced_intron 3172-3441 (orient:-) max_ev_support = 1 scaffold_510 - intron 3172-3441 asmbl_46465 scaffold_510 - retained_intron 3172-3441 asmbl_46464 // Retained and Spliced Intron # retained_intron 6286-6560 (orient:+) max_ev_support = 3 # spliced_intron 6286-6560 (orient:+) max_ev_support = 3 scaffold_52 + intron 6286-6560 asmbl_46476,asmbl_46477 scaffold_52 + retained_intron 6286-6560 asmbl_46475 // Retained and Spliced Intron # retained_intron 6626-6929 (orient:+) max_ev_support = 5 # spliced_intron 6626-6929 (orient:+) max_ev_support = 3 scaffold_52 + intron 6626-6929 asmbl_46477 scaffold_52 + retained_intron 6626-6929 asmbl_46475,asmbl_46476 // Exon Skipping and Retention # skipped_exon 1519-1786 (orient:-) max_ev_support = 1 # retained_exon 1667-1700 (orient:-) max_ev_support = 2 scaffold_52 - retained_exons 1667-1700 asmbl_46482,asmbl_46483 scaffold_52 - intron_skips_exon 1519-1786 asmbl_46486 // Retained and Spliced Intron # retained_intron 1701-1786 (orient:-) max_ev_support = 2 # spliced_intron 1701-1786 (orient:-) max_ev_support = 2 scaffold_52 - intron 1701-1786 asmbl_46482,asmbl_46483 scaffold_52 - retained_intron 1701-1786 asmbl_46484 // Retained and Spliced Intron # retained_intron 7823-8417 (orient:-) max_ev_support = 4 # spliced_intron 7823-8417 (orient:-) max_ev_support = 2 scaffold_54 - intron 7823-8417 asmbl_46504 scaffold_54 - retained_intron 7823-8417 asmbl_46503 // Retained and Spliced Intron # retained_intron 1774-1827 (orient:+) max_ev_support = 1 # spliced_intron 1774-1827 (orient:+) max_ev_support = 1 scaffold_550 + intron 1774-1827 asmbl_46515,asmbl_46516 scaffold_550 + retained_intron 1774-1827 asmbl_46517,asmbl_46518 // Retained and Spliced Intron # retained_intron 4308-4486 (orient:-) max_ev_support = 2 # spliced_intron 4308-4486 (orient:-) max_ev_support = 1 scaffold_56 - intron 4308-4486 asmbl_46522 scaffold_56 - retained_intron 4308-4486 asmbl_46521 // Retained and Spliced Intron # retained_intron 741-875 (orient:-) max_ev_support = 2 # spliced_intron 741-875 (orient:-) max_ev_support = 2 scaffold_560 - intron 741-875 asmbl_46529 scaffold_560 - retained_intron 741-875 asmbl_46530 // Retained and Spliced Intron # retained_intron 3943-4024 (orient:+) max_ev_support = 3 # spliced_intron 3943-4024 (orient:+) max_ev_support = 1 scaffold_566 + intron 3943-4024 asmbl_46538 scaffold_566 + retained_intron 3943-4024 asmbl_46536 // Retained and Spliced Intron # retained_intron 3943-4175 (orient:+) max_ev_support = 3 # spliced_intron 3943-4175 (orient:+) max_ev_support = 1 scaffold_566 + intron 3943-4175 asmbl_46537 scaffold_566 + retained_intron 3943-4175 asmbl_46536 // Retained and Spliced Intron # retained_intron 22910-23017 (orient:+) max_ev_support = 5 # spliced_intron 22910-23017 (orient:+) max_ev_support = 1 scaffold_58 + intron 22910-23017 asmbl_46560 scaffold_58 + retained_intron 22910-23017 asmbl_46559 // Retained and Spliced Intron # retained_intron 14079-14281 (orient:-) max_ev_support = 1 # spliced_intron 14079-14281 (orient:-) max_ev_support = 2 scaffold_58 - intron 14079-14281 asmbl_46563 scaffold_58 - retained_intron 14079-14281 asmbl_46564 // Retained and Spliced Intron # retained_intron 2439-2833 (orient:-) max_ev_support = 3 # spliced_intron 2439-2833 (orient:-) max_ev_support = 1 scaffold_589 - intron 2439-2833 asmbl_46570 scaffold_589 - retained_intron 2439-2833 asmbl_46569 // Retained and Spliced Intron # retained_intron 92644-92783 (orient:+) max_ev_support = 3 # spliced_intron 92644-92783 (orient:+) max_ev_support = 3 scaffold_6 + intron 92644-92783 asmbl_46586 scaffold_6 + retained_intron 92644-92783 asmbl_46585 // Retained and Spliced Intron # retained_intron 187756-187786 (orient:+) max_ev_support = 5 # spliced_intron 187756-187786 (orient:+) max_ev_support = 1 scaffold_6 + intron 187756-187786 asmbl_46591 scaffold_6 + retained_intron 187756-187786 asmbl_46590 // Retained and Spliced Intron # retained_intron 298817-299072 (orient:+) max_ev_support = 3 # spliced_intron 298817-299072 (orient:+) max_ev_support = 3 scaffold_6 + intron 298817-299072 asmbl_46600,asmbl_46603 scaffold_6 + retained_intron 298817-299072 asmbl_46599 // Retained and Spliced Intron # retained_intron 298817-299335 (orient:+) max_ev_support = 3 # spliced_intron 298817-299335 (orient:+) max_ev_support = 2 scaffold_6 + intron 298817-299335 asmbl_46601,asmbl_46604 scaffold_6 + retained_intron 298817-299335 asmbl_46599 // Retained and Spliced Intron # retained_intron 299110-299335 (orient:+) max_ev_support = 3 # spliced_intron 299110-299335 (orient:+) max_ev_support = 1 scaffold_6 + intron 299110-299335 asmbl_46603 scaffold_6 + retained_intron 299110-299335 asmbl_46599,asmbl_46600 // Retained and Spliced Intron # retained_intron 300061-300175 (orient:+) max_ev_support = 1 # spliced_intron 300061-300175 (orient:+) max_ev_support = 1 scaffold_6 + intron 300061-300175 asmbl_46600,asmbl_46603,asmbl_46604 scaffold_6 + retained_intron 300061-300175 asmbl_46599 // Exon Skipping and Retention # skipped_exon 298817-299335 (orient:+) max_ev_support = 2 # retained_exon 299073-299109 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 299073-299109 asmbl_46603 scaffold_6 + intron_skips_exon 298817-299335 asmbl_46601,asmbl_46604 // Retained and Spliced Intron # retained_intron 384396-384552 (orient:+) max_ev_support = 1 # spliced_intron 384396-384552 (orient:+) max_ev_support = 2 scaffold_6 + intron 384396-384552 asmbl_46606 scaffold_6 + retained_intron 384396-384552 asmbl_46607 // Retained and Spliced Intron # retained_intron 573670-573950 (orient:+) max_ev_support = 3 # spliced_intron 573670-573950 (orient:+) max_ev_support = 2 scaffold_6 + intron 573670-573950 asmbl_46617 scaffold_6 + retained_intron 573670-573950 asmbl_46616 // Retained and Spliced Intron # retained_intron 573750-573950 (orient:+) max_ev_support = 3 # spliced_intron 573750-573950 (orient:+) max_ev_support = 2 scaffold_6 + intron 573750-573950 asmbl_46618 scaffold_6 + retained_intron 573750-573950 asmbl_46616 // Retained and Spliced Intron # retained_intron 579872-580943 (orient:+) max_ev_support = 3 # spliced_intron 579872-580943 (orient:+) max_ev_support = 1 scaffold_6 + intron 579872-580943 asmbl_46621 scaffold_6 + retained_intron 579872-580943 asmbl_46620 // Retained and Spliced Intron # retained_intron 801723-801746 (orient:+) max_ev_support = 1 # spliced_intron 801723-801746 (orient:+) max_ev_support = 1 scaffold_6 + intron 801723-801746 asmbl_46629 scaffold_6 + retained_intron 801723-801746 asmbl_46630 // Exon Skipping and Retention # skipped_exon 878149-878728 (orient:+) max_ev_support = 1 # retained_exon 878681-878698 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 878681-878698 asmbl_46637 scaffold_6 + intron_skips_exon 878149-878728 asmbl_46638 // Retained and Spliced Intron # retained_intron 1497143-1498676 (orient:+) max_ev_support = 5 # spliced_intron 1497143-1498676 (orient:+) max_ev_support = 2 scaffold_6 + intron 1497143-1498676 asmbl_46665 scaffold_6 + retained_intron 1497143-1498676 asmbl_46663 // Retained and Spliced Intron # retained_intron 1498115-1498676 (orient:+) max_ev_support = 3 # spliced_intron 1498115-1498676 (orient:+) max_ev_support = 1 scaffold_6 + intron 1498115-1498676 asmbl_46664 scaffold_6 + retained_intron 1498115-1498676 asmbl_46663 // Retained and Spliced Intron # retained_intron 1550441-1550570 (orient:+) max_ev_support = 3 # spliced_intron 1550441-1550570 (orient:+) max_ev_support = 3 scaffold_6 + intron 1550441-1550570 asmbl_46672 scaffold_6 + retained_intron 1550441-1550570 asmbl_46671 // Retained and Spliced Intron # retained_intron 1585415-1585461 (orient:+) max_ev_support = 2 # spliced_intron 1585415-1585461 (orient:+) max_ev_support = 1 scaffold_6 + intron 1585415-1585461 asmbl_46677 scaffold_6 + retained_intron 1585415-1585461 asmbl_46675 // Retained and Spliced Intron # retained_intron 1584416-1584521 (orient:+) max_ev_support = 1 # spliced_intron 1584416-1584521 (orient:+) max_ev_support = 1 scaffold_6 + intron 1584416-1584521 asmbl_46675 scaffold_6 + retained_intron 1584416-1584521 asmbl_46676 // Exon Skipping and Retention # skipped_exon 2484045-2485297 (orient:+) max_ev_support = 1 # retained_exon 2484402-2484433 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 2484402-2484433 asmbl_46702,asmbl_46704 scaffold_6 + intron_skips_exon 2484045-2485297 asmbl_46701,asmbl_46705 // Retained and Spliced Intron # retained_intron 2487326-2487373 (orient:+) max_ev_support = 1 # spliced_intron 2487326-2487373 (orient:+) max_ev_support = 2 scaffold_6 + intron 2487326-2487373 asmbl_46701,asmbl_46702 scaffold_6 + retained_intron 2487326-2487373 asmbl_46704,asmbl_46705 // Retained and Spliced Intron # retained_intron 2758883-2758962 (orient:+) max_ev_support = 2 # spliced_intron 2758883-2758962 (orient:+) max_ev_support = 1 scaffold_6 + intron 2758883-2758962 asmbl_46718 scaffold_6 + retained_intron 2758883-2758962 asmbl_46717 // Retained and Spliced Intron # retained_intron 2758919-2758962 (orient:+) max_ev_support = 2 # spliced_intron 2758919-2758962 (orient:+) max_ev_support = 1 scaffold_6 + intron 2758919-2758962 asmbl_46719 scaffold_6 + retained_intron 2758919-2758962 asmbl_46717 // Retained and Spliced Intron # retained_intron 2909054-2909178 (orient:+) max_ev_support = 2 # spliced_intron 2909054-2909178 (orient:+) max_ev_support = 1 scaffold_6 + intron 2909054-2909178 asmbl_46733,asmbl_46734,asmbl_46735 scaffold_6 + retained_intron 2909054-2909178 asmbl_46732 // Retained and Spliced Intron # retained_intron 2909228-2909325 (orient:+) max_ev_support = 2 # spliced_intron 2909228-2909325 (orient:+) max_ev_support = 1 scaffold_6 + intron 2909228-2909325 asmbl_46733,asmbl_46734,asmbl_46735 scaffold_6 + retained_intron 2909228-2909325 asmbl_46732 // Retained and Spliced Intron # retained_intron 2908621-2908725 (orient:+) max_ev_support = 1 # spliced_intron 2908621-2908725 (orient:+) max_ev_support = 1 scaffold_6 + intron 2908621-2908725 asmbl_46733 scaffold_6 + retained_intron 2908621-2908725 asmbl_46734,asmbl_46735 // Retained and Spliced Intron # retained_intron 2908831-2908974 (orient:+) max_ev_support = 1 # spliced_intron 2908831-2908974 (orient:+) max_ev_support = 1 scaffold_6 + intron 2908831-2908974 asmbl_46733,asmbl_46735 scaffold_6 + retained_intron 2908831-2908974 asmbl_46734 // Exon Skipping and Retention # skipped_exon 3028736-3031447 (orient:+) max_ev_support = 2 # retained_exon 3030026-3030054 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 3030026-3030054 asmbl_46738 scaffold_6 + intron_skips_exon 3028736-3031447 asmbl_46739 // Retained and Spliced Intron # retained_intron 3052979-3053100 (orient:+) max_ev_support = 2 # spliced_intron 3052979-3053100 (orient:+) max_ev_support = 1 scaffold_6 + intron 3052979-3053100 asmbl_46747 scaffold_6 + retained_intron 3052979-3053100 asmbl_46742 // Exon Skipping and Retention # skipped_exon 3056262-3057109 (orient:+) max_ev_support = 1 # retained_exon 3056807-3056923 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 3056807-3056923 asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752 scaffold_6 + intron_skips_exon 3056262-3057109 asmbl_46748 // Retained and Spliced Intron # retained_intron 3057498-3057599 (orient:+) max_ev_support = 1 # spliced_intron 3057498-3057599 (orient:+) max_ev_support = 2 scaffold_6 + intron 3057498-3057599 asmbl_46743,asmbl_46746,asmbl_46748,asmbl_46750,asmbl_46751,asmbl_46752,asmbl_46753 scaffold_6 + retained_intron 3057498-3057599 asmbl_46744 // Retained and Spliced Intron # retained_intron 3056924-3057109 (orient:+) max_ev_support = 1 # spliced_intron 3056924-3057109 (orient:+) max_ev_support = 2 scaffold_6 + intron 3056924-3057109 asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752,asmbl_46753 scaffold_6 + retained_intron 3056924-3057109 asmbl_46745,asmbl_46749 // Retained and Spliced Intron # retained_intron 3055244-3055748 (orient:+) max_ev_support = 1 # spliced_intron 3055244-3055748 (orient:+) max_ev_support = 2 scaffold_6 + intron 3055244-3055748 asmbl_46743,asmbl_46749,asmbl_46751 scaffold_6 + retained_intron 3055244-3055748 asmbl_46748,asmbl_46750,asmbl_46752 // Retained and Spliced Intron # retained_intron 3056262-3056806 (orient:+) max_ev_support = 1 # spliced_intron 3056262-3056806 (orient:+) max_ev_support = 2 scaffold_6 + intron 3056262-3056806 asmbl_46743,asmbl_46744,asmbl_46745,asmbl_46746,asmbl_46750,asmbl_46751,asmbl_46752 scaffold_6 + retained_intron 3056262-3056806 asmbl_46749 // Retained and Spliced Intron # retained_intron 3056262-3057109 (orient:+) max_ev_support = 1 # spliced_intron 3056262-3057109 (orient:+) max_ev_support = 1 scaffold_6 + intron 3056262-3057109 asmbl_46748 scaffold_6 + retained_intron 3056262-3057109 asmbl_46749 // Retained and Spliced Intron # retained_intron 3057252-3057331 (orient:+) max_ev_support = 1 # spliced_intron 3057252-3057331 (orient:+) max_ev_support = 2 scaffold_6 + intron 3057252-3057331 asmbl_46743,asmbl_46744,asmbl_46746,asmbl_46748,asmbl_46750,asmbl_46753 scaffold_6 + retained_intron 3057252-3057331 asmbl_46751,asmbl_46752 // Retained and Spliced Intron # retained_intron 3065689-3066024 (orient:+) max_ev_support = 1 # spliced_intron 3065689-3066024 (orient:+) max_ev_support = 2 scaffold_6 + intron 3065689-3066024 asmbl_46755,asmbl_46756 scaffold_6 + retained_intron 3065689-3066024 asmbl_46759 // Retained and Spliced Intron # retained_intron 3291018-3291248 (orient:+) max_ev_support = 1 # spliced_intron 3291018-3291248 (orient:+) max_ev_support = 2 scaffold_6 + intron 3291018-3291248 asmbl_46771 scaffold_6 + retained_intron 3291018-3291248 asmbl_46772 // Retained and Spliced Intron # retained_intron 3291114-3291248 (orient:+) max_ev_support = 1 # spliced_intron 3291114-3291248 (orient:+) max_ev_support = 1 scaffold_6 + intron 3291114-3291248 asmbl_46773 scaffold_6 + retained_intron 3291114-3291248 asmbl_46772 // Retained and Spliced Intron # retained_intron 3778731-3778944 (orient:+) max_ev_support = 2 # spliced_intron 3778731-3778944 (orient:+) max_ev_support = 2 scaffold_6 + intron 3778731-3778944 asmbl_46799 scaffold_6 + retained_intron 3778731-3778944 asmbl_46796,asmbl_46797,asmbl_46798 // Retained and Spliced Intron # retained_intron 3778396-3778632 (orient:+) max_ev_support = 2 # spliced_intron 3778396-3778632 (orient:+) max_ev_support = 2 scaffold_6 + intron 3778396-3778632 asmbl_46796,asmbl_46799 scaffold_6 + retained_intron 3778396-3778632 asmbl_46797,asmbl_46798 // Retained and Spliced Intron # retained_intron 3779018-3779105 (orient:+) max_ev_support = 2 # spliced_intron 3779018-3779105 (orient:+) max_ev_support = 2 scaffold_6 + intron 3779018-3779105 asmbl_46797,asmbl_46799 scaffold_6 + retained_intron 3779018-3779105 asmbl_46798 // Retained and Spliced Intron # retained_intron 3799951-3800050 (orient:+) max_ev_support = 1 # spliced_intron 3799951-3800050 (orient:+) max_ev_support = 2 scaffold_6 + intron 3799951-3800050 asmbl_46802,asmbl_46803 scaffold_6 + retained_intron 3799951-3800050 asmbl_46804 // Exon Skipping and Retention # skipped_exon 3807411-3808938 (orient:+) max_ev_support = 2 # retained_exon 3808346-3808417 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 3808346-3808417 asmbl_46805,asmbl_46806 scaffold_6 + intron_skips_exon 3807411-3808938 asmbl_46807,asmbl_46810 // Retained and Spliced Intron # retained_intron 3805997-3806086 (orient:+) max_ev_support = 2 # spliced_intron 3805997-3806086 (orient:+) max_ev_support = 2 scaffold_6 + intron 3805997-3806086 asmbl_46809 scaffold_6 + retained_intron 3805997-3806086 asmbl_46808,asmbl_46811,asmbl_46812 // Retained and Spliced Intron # retained_intron 4319469-4319899 (orient:+) max_ev_support = 2 # spliced_intron 4319469-4319899 (orient:+) max_ev_support = 1 scaffold_6 + intron 4319469-4319899 asmbl_46822,asmbl_46824 scaffold_6 + retained_intron 4319469-4319899 asmbl_46821,asmbl_46823,asmbl_46826 // Retained and Spliced Intron # retained_intron 4319469-4319969 (orient:+) max_ev_support = 2 # spliced_intron 4319469-4319969 (orient:+) max_ev_support = 1 scaffold_6 + intron 4319469-4319969 asmbl_46825 scaffold_6 + retained_intron 4319469-4319969 asmbl_46821,asmbl_46823,asmbl_46826 // Exon Skipping and Retention # skipped_exon 4997185-4999978 (orient:+) max_ev_support = 2 # retained_exon 4999173-4999190 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 4999173-4999190 asmbl_46848 scaffold_6 + intron_skips_exon 4997185-4999978 asmbl_46847 // Retained and Spliced Intron # retained_intron 5002265-5002285 (orient:+) max_ev_support = 1 # spliced_intron 5002265-5002285 (orient:+) max_ev_support = 1 scaffold_6 + intron 5002265-5002285 asmbl_46847 scaffold_6 + retained_intron 5002265-5002285 asmbl_46849 // Retained and Spliced Intron # retained_intron 5198065-5198348 (orient:+) max_ev_support = 2 # spliced_intron 5198065-5198348 (orient:+) max_ev_support = 2 scaffold_6 + intron 5198065-5198348 asmbl_46860,asmbl_46863,asmbl_46864,asmbl_46865,asmbl_46870 scaffold_6 + retained_intron 5198065-5198348 asmbl_46859,asmbl_46868 // Retained and Spliced Intron # retained_intron 5197857-5197979 (orient:+) max_ev_support = 1 # spliced_intron 5197857-5197979 (orient:+) max_ev_support = 3 scaffold_6 + intron 5197857-5197979 asmbl_46859,asmbl_46860,asmbl_46863,asmbl_46864,asmbl_46865,asmbl_46870 scaffold_6 + retained_intron 5197857-5197979 asmbl_46867,asmbl_46868 // Retained and Spliced Intron # retained_intron 5265077-5265171 (orient:+) max_ev_support = 2 # spliced_intron 5265077-5265171 (orient:+) max_ev_support = 2 scaffold_6 + intron 5265077-5265171 asmbl_46879 scaffold_6 + retained_intron 5265077-5265171 asmbl_46878 // Retained and Spliced Intron # retained_intron 5434772-5434884 (orient:+) max_ev_support = 2 # spliced_intron 5434772-5434884 (orient:+) max_ev_support = 3 scaffold_6 + intron 5434772-5434884 asmbl_46886,asmbl_46887,asmbl_46888,asmbl_46890 scaffold_6 + retained_intron 5434772-5434884 asmbl_46889 // Retained and Spliced Intron # retained_intron 5752485-5752688 (orient:+) max_ev_support = 3 # spliced_intron 5752485-5752688 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752485-5752688 asmbl_46916,asmbl_46917 scaffold_6 + retained_intron 5752485-5752688 asmbl_46915,asmbl_46918 // Retained and Spliced Intron # retained_intron 5752777-5753623 (orient:+) max_ev_support = 3 # spliced_intron 5752777-5753623 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752777-5753623 asmbl_46916,asmbl_46917,asmbl_46918 scaffold_6 + retained_intron 5752777-5753623 asmbl_46915 // Retained and Spliced Intron # retained_intron 5753701-5753903 (orient:+) max_ev_support = 3 # spliced_intron 5753701-5753903 (orient:+) max_ev_support = 2 scaffold_6 + intron 5753701-5753903 asmbl_46916,asmbl_46917 scaffold_6 + retained_intron 5753701-5753903 asmbl_46915,asmbl_46918 // Retained and Spliced Intron # retained_intron 5753989-5754213 (orient:+) max_ev_support = 3 # spliced_intron 5753989-5754213 (orient:+) max_ev_support = 2 scaffold_6 + intron 5753989-5754213 asmbl_46916,asmbl_46917 scaffold_6 + retained_intron 5753989-5754213 asmbl_46915,asmbl_46918 // Retained and Spliced Intron # retained_intron 5752193-5752361 (orient:+) max_ev_support = 1 # spliced_intron 5752193-5752361 (orient:+) max_ev_support = 2 scaffold_6 + intron 5752193-5752361 asmbl_46915,asmbl_46916 scaffold_6 + retained_intron 5752193-5752361 asmbl_46917 // Retained and Spliced Intron # retained_intron 5930657-5931098 (orient:+) max_ev_support = 2 # spliced_intron 5930657-5931098 (orient:+) max_ev_support = 2 scaffold_6 + intron 5930657-5931098 asmbl_46923 scaffold_6 + retained_intron 5930657-5931098 asmbl_46924 // Retained and Spliced Intron # retained_intron 6869228-6869357 (orient:+) max_ev_support = 2 # spliced_intron 6869228-6869357 (orient:+) max_ev_support = 2 scaffold_6 + intron 6869228-6869357 asmbl_46950 scaffold_6 + retained_intron 6869228-6869357 asmbl_46949,asmbl_46951,asmbl_46953 // Retained and Spliced Intron # retained_intron 7169018-7171242 (orient:+) max_ev_support = 2 # spliced_intron 7169018-7171242 (orient:+) max_ev_support = 1 scaffold_6 + intron 7169018-7171242 asmbl_46988,asmbl_46989,asmbl_46990 scaffold_6 + retained_intron 7169018-7171242 asmbl_46986,asmbl_46991,asmbl_46992 // Retained and Spliced Intron # retained_intron 7171271-7171397 (orient:+) max_ev_support = 2 # spliced_intron 7171271-7171397 (orient:+) max_ev_support = 1 scaffold_6 + intron 7171271-7171397 asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991 scaffold_6 + retained_intron 7171271-7171397 asmbl_46986,asmbl_46992 // Retained and Spliced Intron # retained_intron 7173679-7173782 (orient:+) max_ev_support = 1 # spliced_intron 7173679-7173782 (orient:+) max_ev_support = 1 scaffold_6 + intron 7173679-7173782 asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992 scaffold_6 + retained_intron 7173679-7173782 asmbl_46993 // Retained and Spliced Intron # retained_intron 7173897-7174059 (orient:+) max_ev_support = 1 # spliced_intron 7173897-7174059 (orient:+) max_ev_support = 1 scaffold_6 + intron 7173897-7174059 asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993 scaffold_6 + retained_intron 7173897-7174059 asmbl_46994 // Retained and Spliced Intron # retained_intron 7174170-7174368 (orient:+) max_ev_support = 1 # spliced_intron 7174170-7174368 (orient:+) max_ev_support = 1 scaffold_6 + intron 7174170-7174368 asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993 scaffold_6 + retained_intron 7174170-7174368 asmbl_46994 // Retained and Spliced Intron # retained_intron 7174460-7174541 (orient:+) max_ev_support = 1 # spliced_intron 7174460-7174541 (orient:+) max_ev_support = 1 scaffold_6 + intron 7174460-7174541 asmbl_46988,asmbl_46989,asmbl_46990,asmbl_46991,asmbl_46992,asmbl_46993 scaffold_6 + retained_intron 7174460-7174541 asmbl_46994 // Retained and Spliced Intron # retained_intron 7849457-7849655 (orient:+) max_ev_support = 1 # spliced_intron 7849457-7849655 (orient:+) max_ev_support = 1 scaffold_6 + intron 7849457-7849655 asmbl_47023 scaffold_6 + retained_intron 7849457-7849655 asmbl_47021 // Retained and Spliced Intron # retained_intron 7849656-7849695 (orient:+) max_ev_support = 1 # spliced_intron 7849656-7849695 (orient:+) max_ev_support = 1 scaffold_6 + intron 7849656-7849695 asmbl_47022 scaffold_6 + retained_intron 7849656-7849695 asmbl_47021 // Retained and Spliced Intron # retained_intron 8460271-8460401 (orient:+) max_ev_support = 2 # spliced_intron 8460271-8460401 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460271-8460401 asmbl_47062 scaffold_6 + retained_intron 8460271-8460401 asmbl_47061,asmbl_47063 // Retained and Spliced Intron # retained_intron 8460271-8460406 (orient:+) max_ev_support = 2 # spliced_intron 8460271-8460406 (orient:+) max_ev_support = 1 scaffold_6 + intron 8460271-8460406 asmbl_47064 scaffold_6 + retained_intron 8460271-8460406 asmbl_47061,asmbl_47063 // Retained and Spliced Intron # retained_intron 8460449-8460563 (orient:+) max_ev_support = 2 # spliced_intron 8460449-8460563 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460449-8460563 asmbl_47062,asmbl_47063,asmbl_47064 scaffold_6 + retained_intron 8460449-8460563 asmbl_47061 // Retained and Spliced Intron # retained_intron 8460732-8460860 (orient:+) max_ev_support = 1 # spliced_intron 8460732-8460860 (orient:+) max_ev_support = 2 scaffold_6 + intron 8460732-8460860 asmbl_47061,asmbl_47062,asmbl_47063,asmbl_47064 scaffold_6 + retained_intron 8460732-8460860 asmbl_47065 // Retained and Spliced Intron # retained_intron 8580963-8581085 (orient:+) max_ev_support = 1 # spliced_intron 8580963-8581085 (orient:+) max_ev_support = 1 scaffold_6 + intron 8580963-8581085 asmbl_47086,asmbl_47088 scaffold_6 + retained_intron 8580963-8581085 asmbl_47085,asmbl_47087,asmbl_47089 // Retained and Spliced Intron # retained_intron 8581465-8581566 (orient:+) max_ev_support = 1 # spliced_intron 8581465-8581566 (orient:+) max_ev_support = 1 scaffold_6 + intron 8581465-8581566 asmbl_47091 scaffold_6 + retained_intron 8581465-8581566 asmbl_47086,asmbl_47090 // Retained and Spliced Intron # retained_intron 8581614-8581696 (orient:+) max_ev_support = 1 # spliced_intron 8581614-8581696 (orient:+) max_ev_support = 1 scaffold_6 + intron 8581614-8581696 asmbl_47088,asmbl_47091 scaffold_6 + retained_intron 8581614-8581696 asmbl_47086,asmbl_47090 // Retained and Spliced Intron # retained_intron 8582069-8582179 (orient:+) max_ev_support = 1 # spliced_intron 8582069-8582179 (orient:+) max_ev_support = 1 scaffold_6 + intron 8582069-8582179 asmbl_47090,asmbl_47091 scaffold_6 + retained_intron 8582069-8582179 asmbl_47086,asmbl_47088 // Retained and Spliced Intron # retained_intron 8579544-8579666 (orient:+) max_ev_support = 1 # spliced_intron 8579544-8579666 (orient:+) max_ev_support = 1 scaffold_6 + intron 8579544-8579666 asmbl_47085,asmbl_47086,asmbl_47087,asmbl_47088 scaffold_6 + retained_intron 8579544-8579666 asmbl_47089 // Exon Skipping and Retention # skipped_exon 8586032-8587723 (orient:+) max_ev_support = 1 # retained_exon 8586962-8587596 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 8586962-8587103,8587286-8587392,8587498-8587596 asmbl_47093,asmbl_47094 scaffold_6 + intron_skips_exon 8586032-8587723 asmbl_47098 // Retained and Spliced Intron # retained_intron 8643223-8643316 (orient:+) max_ev_support = 1 # spliced_intron 8643223-8643316 (orient:+) max_ev_support = 1 scaffold_6 + intron 8643223-8643316 asmbl_47104,asmbl_47107 scaffold_6 + retained_intron 8643223-8643316 asmbl_47105 // Retained and Spliced Intron # retained_intron 8643223-8643354 (orient:+) max_ev_support = 1 # spliced_intron 8643223-8643354 (orient:+) max_ev_support = 2 scaffold_6 + intron 8643223-8643354 asmbl_47103,asmbl_47106 scaffold_6 + retained_intron 8643223-8643354 asmbl_47105 // Retained and Spliced Intron # retained_intron 9012696-9012818 (orient:+) max_ev_support = 2 # spliced_intron 9012696-9012818 (orient:+) max_ev_support = 2 scaffold_6 + intron 9012696-9012818 asmbl_47128 scaffold_6 + retained_intron 9012696-9012818 asmbl_47126,asmbl_47127 // Exon Skipping and Retention # skipped_exon 9011491-9011835 (orient:+) max_ev_support = 1 # retained_exon 9011668-9011737 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 9011668-9011737 asmbl_47127,asmbl_47128 scaffold_6 + intron_skips_exon 9011491-9011835 asmbl_47126 // Retained and Spliced Intron # retained_intron 9089438-9089565 (orient:+) max_ev_support = 1 # spliced_intron 9089438-9089565 (orient:+) max_ev_support = 2 scaffold_6 + intron 9089438-9089565 asmbl_47135 scaffold_6 + retained_intron 9089438-9089565 asmbl_47136 // Retained and Spliced Intron # retained_intron 9093568-9093795 (orient:+) max_ev_support = 1 # spliced_intron 9093568-9093795 (orient:+) max_ev_support = 2 scaffold_6 + intron 9093568-9093795 asmbl_47137,asmbl_47140 scaffold_6 + retained_intron 9093568-9093795 asmbl_47139 // Exon Skipping and Retention # skipped_exon 9134833-9135545 (orient:+) max_ev_support = 1 # retained_exon 9134985-9135029 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 9134985-9135029 asmbl_47143,asmbl_47144,asmbl_47146 scaffold_6 + intron_skips_exon 9134833-9135545 asmbl_47148,asmbl_47152,asmbl_47153,asmbl_47154,asmbl_47155,asmbl_47156,asmbl_47157 // Exon Skipping and Retention # skipped_exon 9131836-9134144 (orient:+) max_ev_support = 1 # retained_exon 9132526-9132633 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 9132526-9132633 asmbl_47146,asmbl_47155,asmbl_47156,asmbl_47157 scaffold_6 + intron_skips_exon 9131836-9134144 asmbl_47143,asmbl_47153,asmbl_47154 // Retained and Spliced Intron # retained_intron 9170836-9170927 (orient:+) max_ev_support = 2 # spliced_intron 9170836-9170927 (orient:+) max_ev_support = 3 scaffold_6 + intron 9170836-9170927 asmbl_47160 scaffold_6 + retained_intron 9170836-9170927 asmbl_47161 // Retained and Spliced Intron # retained_intron 9585597-9585676 (orient:+) max_ev_support = 2 # spliced_intron 9585597-9585676 (orient:+) max_ev_support = 2 scaffold_6 + intron 9585597-9585676 asmbl_47166 scaffold_6 + retained_intron 9585597-9585676 asmbl_47167 // Retained and Spliced Intron # retained_intron 9585760-9586086 (orient:+) max_ev_support = 2 # spliced_intron 9585760-9586086 (orient:+) max_ev_support = 2 scaffold_6 + intron 9585760-9586086 asmbl_47166 scaffold_6 + retained_intron 9585760-9586086 asmbl_47167 // Exon Skipping and Retention # skipped_exon 9909113-9911434 (orient:+) max_ev_support = 1 # retained_exon 9909810-9910437 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 9909810-9909893,9910384-9910437 asmbl_47185 scaffold_6 + intron_skips_exon 9909113-9911434 asmbl_47184 // Exon Skipping and Retention # skipped_exon 9909894-9911434 (orient:+) max_ev_support = 1 # retained_exon 9910384-9910437 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 9910384-9910437 asmbl_47185 scaffold_6 + intron_skips_exon 9909894-9911434 asmbl_47186 // Retained and Spliced Intron # retained_intron 9909894-9910383 (orient:+) max_ev_support = 3 # spliced_intron 9909894-9910383 (orient:+) max_ev_support = 1 scaffold_6 + intron 9909894-9910383 asmbl_47185 scaffold_6 + retained_intron 9909894-9910383 asmbl_47187 // Exon Skipping and Retention # skipped_exon 9956533-9958195 (orient:+) max_ev_support = 2 # retained_exon 9956826-9957719 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 9956826-9956960,9957594-9957719 asmbl_47191 scaffold_6 + intron_skips_exon 9956533-9958195 asmbl_47192 // Retained and Spliced Intron # retained_intron 10231662-10231807 (orient:+) max_ev_support = 2 # spliced_intron 10231662-10231807 (orient:+) max_ev_support = 1 scaffold_6 + intron 10231662-10231807 asmbl_47212 scaffold_6 + retained_intron 10231662-10231807 asmbl_47211 // Retained and Spliced Intron # retained_intron 10393410-10393501 (orient:+) max_ev_support = 2 # spliced_intron 10393410-10393501 (orient:+) max_ev_support = 2 scaffold_6 + intron 10393410-10393501 asmbl_47219 scaffold_6 + retained_intron 10393410-10393501 asmbl_47220 // Retained and Spliced Intron # retained_intron 10546689-10547006 (orient:+) max_ev_support = 2 # spliced_intron 10546689-10547006 (orient:+) max_ev_support = 2 scaffold_6 + intron 10546689-10547006 asmbl_47224 scaffold_6 + retained_intron 10546689-10547006 asmbl_47225 // Retained and Spliced Intron # retained_intron 10718997-10719099 (orient:+) max_ev_support = 2 # spliced_intron 10718997-10719099 (orient:+) max_ev_support = 2 scaffold_6 + intron 10718997-10719099 asmbl_47227 scaffold_6 + retained_intron 10718997-10719099 asmbl_47226,asmbl_47228 // Retained and Spliced Intron # retained_intron 10724279-10724368 (orient:+) max_ev_support = 2 # spliced_intron 10724279-10724368 (orient:+) max_ev_support = 2 scaffold_6 + intron 10724279-10724368 asmbl_47227,asmbl_47228 scaffold_6 + retained_intron 10724279-10724368 asmbl_47226 // Exon Skipping and Retention # skipped_exon 10894193-10895417 (orient:+) max_ev_support = 2 # retained_exon 10895155-10895251 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 10895155-10895251 asmbl_47241 scaffold_6 + intron_skips_exon 10894193-10895417 asmbl_47240 // Retained and Spliced Intron # retained_intron 10897965-10898174 (orient:+) max_ev_support = 2 # spliced_intron 10897965-10898174 (orient:+) max_ev_support = 2 scaffold_6 + intron 10897965-10898174 asmbl_47240,asmbl_47241 scaffold_6 + retained_intron 10897965-10898174 asmbl_47243 // Retained and Spliced Intron # retained_intron 10898864-10899075 (orient:+) max_ev_support = 2 # spliced_intron 10898864-10899075 (orient:+) max_ev_support = 2 scaffold_6 + intron 10898864-10899075 asmbl_47240,asmbl_47241,asmbl_47244 scaffold_6 + retained_intron 10898864-10899075 asmbl_47245 // Retained and Spliced Intron # retained_intron 10916944-10917091 (orient:+) max_ev_support = 2 # spliced_intron 10916944-10917091 (orient:+) max_ev_support = 2 scaffold_6 + intron 10916944-10917091 asmbl_47247 scaffold_6 + retained_intron 10916944-10917091 asmbl_47248 // Retained and Spliced Intron # retained_intron 11482302-11482747 (orient:+) max_ev_support = 2 # spliced_intron 11482302-11482747 (orient:+) max_ev_support = 1 scaffold_6 + intron 11482302-11482747 asmbl_47269 scaffold_6 + retained_intron 11482302-11482747 asmbl_47263 // Retained and Spliced Intron # retained_intron 11489986-11490454 (orient:+) max_ev_support = 2 # spliced_intron 11489986-11490454 (orient:+) max_ev_support = 1 scaffold_6 + intron 11489986-11490454 asmbl_47267,asmbl_47269,asmbl_47270 scaffold_6 + retained_intron 11489986-11490454 asmbl_47263,asmbl_47264,asmbl_47268,asmbl_47271,asmbl_47272 // Exon Skipping and Retention # skipped_exon 11482302-11482900 (orient:+) max_ev_support = 2 # retained_exon 11482748-11482799 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 11482748-11482799 asmbl_47269 scaffold_6 + intron_skips_exon 11482302-11482900 asmbl_47264,asmbl_47267 // Exon Skipping and Retention # skipped_exon 11482302-11482860 (orient:+) max_ev_support = 1 # retained_exon 11482748-11482799 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 11482748-11482799 asmbl_47269 scaffold_6 + intron_skips_exon 11482302-11482860 asmbl_47268,asmbl_47270 // Retained and Spliced Intron # retained_intron 11499265-11499368 (orient:+) max_ev_support = 2 # spliced_intron 11499265-11499368 (orient:+) max_ev_support = 3 scaffold_6 + intron 11499265-11499368 asmbl_47273,asmbl_47274 scaffold_6 + retained_intron 11499265-11499368 asmbl_47275 // Retained and Spliced Intron # retained_intron 11668222-11669586 (orient:+) max_ev_support = 2 # spliced_intron 11668222-11669586 (orient:+) max_ev_support = 3 scaffold_6 + intron 11668222-11669586 asmbl_47293 scaffold_6 + retained_intron 11668222-11669586 asmbl_47294 // Retained and Spliced Intron # retained_intron 12116976-12117069 (orient:+) max_ev_support = 3 # spliced_intron 12116976-12117069 (orient:+) max_ev_support = 3 scaffold_6 + intron 12116976-12117069 asmbl_47309 scaffold_6 + retained_intron 12116976-12117069 asmbl_47310 // Exon Skipping and Retention # skipped_exon 12477780-12479147 (orient:+) max_ev_support = 2 # retained_exon 12478001-12478109 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 12478001-12478109 asmbl_47333,asmbl_47334,asmbl_47337 scaffold_6 + intron_skips_exon 12477780-12479147 asmbl_47335,asmbl_47336 // Retained and Spliced Intron # retained_intron 12479611-12479961 (orient:+) max_ev_support = 2 # spliced_intron 12479611-12479961 (orient:+) max_ev_support = 1 scaffold_6 + intron 12479611-12479961 asmbl_47336,asmbl_47337 scaffold_6 + retained_intron 12479611-12479961 asmbl_47333,asmbl_47334,asmbl_47335 // Retained and Spliced Intron # retained_intron 12480315-12482223 (orient:+) max_ev_support = 7 # spliced_intron 12480315-12482223 (orient:+) max_ev_support = 2 scaffold_6 + intron 12480315-12482223 asmbl_47334,asmbl_47335,asmbl_47336,asmbl_47337 scaffold_6 + retained_intron 12480315-12482223 asmbl_47333 // Retained and Spliced Intron # retained_intron 12484088-12484230 (orient:+) max_ev_support = 3 # spliced_intron 12484088-12484230 (orient:+) max_ev_support = 3 scaffold_6 + intron 12484088-12484230 asmbl_47338,asmbl_47340,asmbl_47341 scaffold_6 + retained_intron 12484088-12484230 asmbl_47339 // Retained and Spliced Intron # retained_intron 12484297-12484381 (orient:+) max_ev_support = 3 # spliced_intron 12484297-12484381 (orient:+) max_ev_support = 3 scaffold_6 + intron 12484297-12484381 asmbl_47338 scaffold_6 + retained_intron 12484297-12484381 asmbl_47339,asmbl_47340 // Retained and Spliced Intron # retained_intron 12484297-12484408 (orient:+) max_ev_support = 3 # spliced_intron 12484297-12484408 (orient:+) max_ev_support = 1 scaffold_6 + intron 12484297-12484408 asmbl_47341 scaffold_6 + retained_intron 12484297-12484408 asmbl_47339,asmbl_47340 // Retained and Spliced Intron # retained_intron 12654661-12655318 (orient:+) max_ev_support = 4 # spliced_intron 12654661-12655318 (orient:+) max_ev_support = 1 scaffold_6 + intron 12654661-12655318 asmbl_47368 scaffold_6 + retained_intron 12654661-12655318 asmbl_47364 // Retained and Spliced Intron # retained_intron 12653940-12654089 (orient:+) max_ev_support = 2 # spliced_intron 12653940-12654089 (orient:+) max_ev_support = 2 scaffold_6 + intron 12653940-12654089 asmbl_47364 scaffold_6 + retained_intron 12653940-12654089 asmbl_47365 // Retained and Spliced Intron # retained_intron 12653940-12654092 (orient:+) max_ev_support = 2 # spliced_intron 12653940-12654092 (orient:+) max_ev_support = 1 scaffold_6 + intron 12653940-12654092 asmbl_47367 scaffold_6 + retained_intron 12653940-12654092 asmbl_47365 // Exon Skipping and Retention # skipped_exon 12900264-12901388 (orient:+) max_ev_support = 1 # retained_exon 12900357-12900510 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 12900357-12900510 asmbl_47378,asmbl_47380 scaffold_6 + intron_skips_exon 12900264-12901388 asmbl_47379 // Retained and Spliced Intron # retained_intron 12911385-12911667 (orient:+) max_ev_support = 5 # spliced_intron 12911385-12911667 (orient:+) max_ev_support = 2 scaffold_6 + intron 12911385-12911667 asmbl_47383 scaffold_6 + retained_intron 12911385-12911667 asmbl_47382 // Retained and Spliced Intron # retained_intron 12937728-12937921 (orient:+) max_ev_support = 2 # spliced_intron 12937728-12937921 (orient:+) max_ev_support = 3 scaffold_6 + intron 12937728-12937921 asmbl_47392 scaffold_6 + retained_intron 12937728-12937921 asmbl_47393 // Exon Skipping and Retention # skipped_exon 13189003-13190557 (orient:+) max_ev_support = 1 # retained_exon 13190029-13190125 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 13190029-13190125 asmbl_47420,asmbl_47421,asmbl_47422 scaffold_6 + intron_skips_exon 13189003-13190557 asmbl_47423,asmbl_47424 // Retained and Spliced Intron # retained_intron 13229076-13229383 (orient:+) max_ev_support = 2 # spliced_intron 13229076-13229383 (orient:+) max_ev_support = 2 scaffold_6 + intron 13229076-13229383 asmbl_47441,asmbl_47445,asmbl_47449 scaffold_6 + retained_intron 13229076-13229383 asmbl_47439,asmbl_47442,asmbl_47443,asmbl_47444,asmbl_47448 // Retained and Spliced Intron # retained_intron 13229094-13229383 (orient:+) max_ev_support = 2 # spliced_intron 13229094-13229383 (orient:+) max_ev_support = 1 scaffold_6 + intron 13229094-13229383 asmbl_47440,asmbl_47446,asmbl_47447 scaffold_6 + retained_intron 13229094-13229383 asmbl_47439,asmbl_47442,asmbl_47443,asmbl_47444,asmbl_47448 // Retained and Spliced Intron # retained_intron 13268432-13268569 (orient:+) max_ev_support = 1 # spliced_intron 13268432-13268569 (orient:+) max_ev_support = 2 scaffold_6 + intron 13268432-13268569 asmbl_47451,asmbl_47455 scaffold_6 + retained_intron 13268432-13268569 asmbl_47454 // Retained and Spliced Intron # retained_intron 13317856-13318018 (orient:+) max_ev_support = 3 # spliced_intron 13317856-13318018 (orient:+) max_ev_support = 3 scaffold_6 + intron 13317856-13318018 asmbl_47462 scaffold_6 + retained_intron 13317856-13318018 asmbl_47461 // Retained and Spliced Intron # retained_intron 13871377-13871524 (orient:+) max_ev_support = 5 # spliced_intron 13871377-13871524 (orient:+) max_ev_support = 3 scaffold_6 + intron 13871377-13871524 asmbl_47479 scaffold_6 + retained_intron 13871377-13871524 asmbl_47478 // Retained and Spliced Intron # retained_intron 13871424-13871524 (orient:+) max_ev_support = 5 # spliced_intron 13871424-13871524 (orient:+) max_ev_support = 7 scaffold_6 + intron 13871424-13871524 asmbl_47477 scaffold_6 + retained_intron 13871424-13871524 asmbl_47478 // Retained and Spliced Intron # retained_intron 13944744-13944958 (orient:+) max_ev_support = 3 # spliced_intron 13944744-13944958 (orient:+) max_ev_support = 1 scaffold_6 + intron 13944744-13944958 asmbl_47488 scaffold_6 + retained_intron 13944744-13944958 asmbl_47486,asmbl_47487 // Retained and Spliced Intron # retained_intron 13964868-13965021 (orient:+) max_ev_support = 1 # spliced_intron 13964868-13965021 (orient:+) max_ev_support = 2 scaffold_6 + intron 13964868-13965021 asmbl_47490,asmbl_47491 scaffold_6 + retained_intron 13964868-13965021 asmbl_47492 // Retained and Spliced Intron # retained_intron 13974353-13974450 (orient:+) max_ev_support = 1 # spliced_intron 13974353-13974450 (orient:+) max_ev_support = 3 scaffold_6 + intron 13974353-13974450 asmbl_47494 scaffold_6 + retained_intron 13974353-13974450 asmbl_47496 // Exon Skipping and Retention # skipped_exon 14116701-14117085 (orient:+) max_ev_support = 1 # retained_exon 14116838-14116948 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14116838-14116948 asmbl_47517 scaffold_6 + intron_skips_exon 14116701-14117085 asmbl_47518 // Exon Skipping and Retention # skipped_exon 14116949-14117326 (orient:+) max_ev_support = 1 # retained_exon 14117086-14117196 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14117086-14117196 asmbl_47518 scaffold_6 + intron_skips_exon 14116949-14117326 asmbl_47517 // Exon Skipping and Retention # skipped_exon 14195603-14197732 (orient:+) max_ev_support = 2 # retained_exon 14196364-14197561 (orient:+) max_ev_support = 4 scaffold_6 + retained_exons 14196364-14197561 asmbl_47528 scaffold_6 + intron_skips_exon 14195603-14197732 asmbl_47530 // Retained and Spliced Intron # retained_intron 14197562-14197732 (orient:+) max_ev_support = 2 # spliced_intron 14197562-14197732 (orient:+) max_ev_support = 2 scaffold_6 + intron 14197562-14197732 asmbl_47528 scaffold_6 + retained_intron 14197562-14197732 asmbl_47529 // Retained and Spliced Intron # retained_intron 14379745-14379856 (orient:+) max_ev_support = 3 # spliced_intron 14379745-14379856 (orient:+) max_ev_support = 2 scaffold_6 + intron 14379745-14379856 asmbl_47539 scaffold_6 + retained_intron 14379745-14379856 asmbl_47538 // Retained and Spliced Intron # retained_intron 14511822-14511873 (orient:+) max_ev_support = 2 # spliced_intron 14511822-14511873 (orient:+) max_ev_support = 1 scaffold_6 + intron 14511822-14511873 asmbl_47559 scaffold_6 + retained_intron 14511822-14511873 asmbl_47558 // Exon Skipping and Retention # skipped_exon 14593384-14594419 (orient:+) max_ev_support = 2 # retained_exon 14594006-14594041 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 14594006-14594041 asmbl_47568 scaffold_6 + intron_skips_exon 14593384-14594419 asmbl_47566 // Retained and Spliced Intron # retained_intron 14900185-14900520 (orient:+) max_ev_support = 3 # spliced_intron 14900185-14900520 (orient:+) max_ev_support = 2 scaffold_6 + intron 14900185-14900520 asmbl_47585 scaffold_6 + retained_intron 14900185-14900520 asmbl_47584,asmbl_47586 // Exon Skipping and Retention # skipped_exon 14899596-14900520 (orient:+) max_ev_support = 3 # retained_exon 14900005-14900184 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 14900005-14900184 asmbl_47585 scaffold_6 + intron_skips_exon 14899596-14900520 asmbl_47583 // Retained and Spliced Intron # retained_intron 15095011-15095132 (orient:+) max_ev_support = 3 # spliced_intron 15095011-15095132 (orient:+) max_ev_support = 1 scaffold_6 + intron 15095011-15095132 asmbl_47592 scaffold_6 + retained_intron 15095011-15095132 asmbl_47591 // Exon Skipping and Retention # skipped_exon 15362089-15363299 (orient:+) max_ev_support = 2 # retained_exon 15362406-15362461 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 15362406-15362461 asmbl_47599 scaffold_6 + intron_skips_exon 15362089-15363299 asmbl_47598 // Retained and Spliced Intron # retained_intron 15944850-15945070 (orient:+) max_ev_support = 1 # spliced_intron 15944850-15945070 (orient:+) max_ev_support = 1 scaffold_6 + intron 15944850-15945070 asmbl_47621 scaffold_6 + retained_intron 15944850-15945070 asmbl_47619 // Retained and Spliced Intron # retained_intron 15944871-15944986 (orient:+) max_ev_support = 1 # spliced_intron 15944871-15944986 (orient:+) max_ev_support = 1 scaffold_6 + intron 15944871-15944986 asmbl_47618 scaffold_6 + retained_intron 15944871-15944986 asmbl_47619,asmbl_47620 // Retained and Spliced Intron # retained_intron 15945018-15945059 (orient:+) max_ev_support = 1 # spliced_intron 15945018-15945059 (orient:+) max_ev_support = 1 scaffold_6 + intron 15945018-15945059 asmbl_47620 scaffold_6 + retained_intron 15945018-15945059 asmbl_47619 // Retained and Spliced Intron # retained_intron 15945144-15945206 (orient:+) max_ev_support = 1 # spliced_intron 15945144-15945206 (orient:+) max_ev_support = 1 scaffold_6 + intron 15945144-15945206 asmbl_47619,asmbl_47620 scaffold_6 + retained_intron 15945144-15945206 asmbl_47621 // Retained and Spliced Intron # retained_intron 16387153-16387269 (orient:+) max_ev_support = 3 # spliced_intron 16387153-16387269 (orient:+) max_ev_support = 3 scaffold_6 + intron 16387153-16387269 asmbl_47633 scaffold_6 + retained_intron 16387153-16387269 asmbl_47634 // Exon Skipping and Retention # skipped_exon 16604802-16607492 (orient:+) max_ev_support = 1 # retained_exon 16605135-16605330 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 16605135-16605330 asmbl_47648 scaffold_6 + intron_skips_exon 16604802-16607492 asmbl_47647 // Retained and Spliced Intron # retained_intron 16613086-16613686 (orient:+) max_ev_support = 2 # spliced_intron 16613086-16613686 (orient:+) max_ev_support = 2 scaffold_6 + intron 16613086-16613686 asmbl_47651,asmbl_47653 scaffold_6 + retained_intron 16613086-16613686 asmbl_47650,asmbl_47652 // Retained and Spliced Intron # retained_intron 16614134-16614236 (orient:+) max_ev_support = 2 # spliced_intron 16614134-16614236 (orient:+) max_ev_support = 2 scaffold_6 + intron 16614134-16614236 asmbl_47651,asmbl_47652 scaffold_6 + retained_intron 16614134-16614236 asmbl_47650,asmbl_47653 // Retained and Spliced Intron # retained_intron 17522323-17523320 (orient:+) max_ev_support = 5 # spliced_intron 17522323-17523320 (orient:+) max_ev_support = 2 scaffold_6 + intron 17522323-17523320 asmbl_47700,asmbl_47701 scaffold_6 + retained_intron 17522323-17523320 asmbl_47699 // Retained and Spliced Intron # retained_intron 17524201-17525243 (orient:+) max_ev_support = 4 # spliced_intron 17524201-17525243 (orient:+) max_ev_support = 2 scaffold_6 + intron 17524201-17525243 asmbl_47701 scaffold_6 + retained_intron 17524201-17525243 asmbl_47699,asmbl_47700,asmbl_47702 // Exon Skipping and Retention # skipped_exon 17522092-17523322 (orient:+) max_ev_support = 1 # retained_exon 17522228-17522322 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 17522228-17522322 asmbl_47700,asmbl_47701 scaffold_6 + intron_skips_exon 17522092-17523322 asmbl_47702 // Retained and Spliced Intron # retained_intron 17670897-17672065 (orient:+) max_ev_support = 2 # spliced_intron 17670897-17672065 (orient:+) max_ev_support = 3 scaffold_6 + intron 17670897-17672065 asmbl_47710,asmbl_47712 scaffold_6 + retained_intron 17670897-17672065 asmbl_47711,asmbl_47714 // Retained and Spliced Intron # retained_intron 17671975-17672065 (orient:+) max_ev_support = 2 # spliced_intron 17671975-17672065 (orient:+) max_ev_support = 2 scaffold_6 + intron 17671975-17672065 asmbl_47713,asmbl_47715 scaffold_6 + retained_intron 17671975-17672065 asmbl_47711,asmbl_47714 // Retained and Spliced Intron # retained_intron 17672230-17672360 (orient:+) max_ev_support = 2 # spliced_intron 17672230-17672360 (orient:+) max_ev_support = 3 scaffold_6 + intron 17672230-17672360 asmbl_47710,asmbl_47712,asmbl_47714,asmbl_47715 scaffold_6 + retained_intron 17672230-17672360 asmbl_47711,asmbl_47713 // Retained and Spliced Intron # retained_intron 17672463-17672607 (orient:+) max_ev_support = 2 # spliced_intron 17672463-17672607 (orient:+) max_ev_support = 3 scaffold_6 + intron 17672463-17672607 asmbl_47710,asmbl_47715 scaffold_6 + retained_intron 17672463-17672607 asmbl_47711,asmbl_47712,asmbl_47713,asmbl_47714 // Exon Skipping and Retention # skipped_exon 17847263-17848256 (orient:+) max_ev_support = 1 # retained_exon 17847751-17847759 (orient:+) max_ev_support = 1 scaffold_6 + retained_exons 17847751-17847759 asmbl_47731 scaffold_6 + intron_skips_exon 17847263-17848256 asmbl_47730 // Exon Skipping and Retention # skipped_exon 17885654-17886621 (orient:+) max_ev_support = 2 # retained_exon 17886316-17886424 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 17886316-17886424 asmbl_47736,asmbl_47739 scaffold_6 + intron_skips_exon 17885654-17886621 asmbl_47738 // Exon Skipping and Retention # skipped_exon 17885654-17886862 (orient:+) max_ev_support = 3 # retained_exon 17886316-17886665 (orient:+) max_ev_support = 3 scaffold_6 + retained_exons 17886316-17886424,17886622-17886665 asmbl_47736 scaffold_6 + retained_exons 17886316-17886665 asmbl_47737 scaffold_6 + retained_exons 17886316-17886424,17886598-17886665 asmbl_47739 scaffold_6 + intron_skips_exon 17885654-17886862 asmbl_47735 // Retained and Spliced Intron # retained_intron 17886425-17886597 (orient:+) max_ev_support = 3 # spliced_intron 17886425-17886597 (orient:+) max_ev_support = 2 scaffold_6 + intron 17886425-17886597 asmbl_47739 scaffold_6 + retained_intron 17886425-17886597 asmbl_47737 // Retained and Spliced Intron # retained_intron 17886425-17886621 (orient:+) max_ev_support = 3 # spliced_intron 17886425-17886621 (orient:+) max_ev_support = 3 scaffold_6 + intron 17886425-17886621 asmbl_47736 scaffold_6 + retained_intron 17886425-17886621 asmbl_47737 // Retained and Spliced Intron # retained_intron 18077604-18078336 (orient:+) max_ev_support = 5 # spliced_intron 18077604-18078336 (orient:+) max_ev_support = 1 scaffold_6 + intron 18077604-18078336 asmbl_47753 scaffold_6 + retained_intron 18077604-18078336 asmbl_47752 // Retained and Spliced Intron # retained_intron 18098902-18099238 (orient:+) max_ev_support = 2 # spliced_intron 18098902-18099238 (orient:+) max_ev_support = 1 scaffold_6 + intron 18098902-18099238 asmbl_47762 scaffold_6 + retained_intron 18098902-18099238 asmbl_47761 // Retained and Spliced Intron # retained_intron 18269465-18269732 (orient:+) max_ev_support = 3 # spliced_intron 18269465-18269732 (orient:+) max_ev_support = 2 scaffold_6 + intron 18269465-18269732 asmbl_47768,asmbl_47769 scaffold_6 + retained_intron 18269465-18269732 asmbl_47767 // Retained and Spliced Intron # retained_intron 18269773-18269974 (orient:+) max_ev_support = 2 # spliced_intron 18269773-18269974 (orient:+) max_ev_support = 2 scaffold_6 + intron 18269773-18269974 asmbl_47768 scaffold_6 + retained_intron 18269773-18269974 asmbl_47767,asmbl_47769 // Exon Skipping and Retention # skipped_exon 18659791-18661833 (orient:+) max_ev_support = 3 # retained_exon 18660363-18660383 (orient:+) max_ev_support = 2 scaffold_6 + retained_exons 18660363-18660383 asmbl_47777 scaffold_6 + intron_skips_exon 18659791-18661833 asmbl_47776 // Retained and Spliced Intron # retained_intron 18691242-18691696 (orient:+) max_ev_support = 2 # spliced_intron 18691242-18691696 (orient:+) max_ev_support = 3 scaffold_6 + intron 18691242-18691696 asmbl_47783,asmbl_47784,asmbl_47786 scaffold_6 + retained_intron 18691242-18691696 asmbl_47785 // Retained and Spliced Intron # retained_intron 18716897-18717097 (orient:+) max_ev_support = 3 # spliced_intron 18716897-18717097 (orient:+) max_ev_support = 1 scaffold_6 + intron 18716897-18717097 asmbl_47790 scaffold_6 + retained_intron 18716897-18717097 asmbl_47789,asmbl_47791 // Retained and Spliced Intron # retained_intron 19075642-19076743 (orient:+) max_ev_support = 3 # spliced_intron 19075642-19076743 (orient:+) max_ev_support = 3 scaffold_6 + intron 19075642-19076743 asmbl_47813,asmbl_47814 scaffold_6 + retained_intron 19075642-19076743 asmbl_47815,asmbl_47816,asmbl_47817 // Retained and Spliced Intron # retained_intron 19076966-19077208 (orient:+) max_ev_support = 2 # spliced_intron 19076966-19077208 (orient:+) max_ev_support = 3 scaffold_6 + intron 19076966-19077208 asmbl_47814,asmbl_47816 scaffold_6 + retained_intron 19076966-19077208 asmbl_47817 // Retained and Spliced Intron # retained_intron 19076979-19077208 (orient:+) max_ev_support = 2 # spliced_intron 19076979-19077208 (orient:+) max_ev_support = 3 scaffold_6 + intron 19076979-19077208 asmbl_47813,asmbl_47815 scaffold_6 + retained_intron 19076979-19077208 asmbl_47817 // Retained and Spliced Intron # retained_intron 19111383-19111555 (orient:+) max_ev_support = 3 # spliced_intron 19111383-19111555 (orient:+) max_ev_support = 3 scaffold_6 + intron 19111383-19111555 asmbl_47821,asmbl_47822 scaffold_6 + retained_intron 19111383-19111555 asmbl_47820 // Retained and Spliced Intron # retained_intron 42979-43126 (orient:-) max_ev_support = 1 # spliced_intron 42979-43126 (orient:-) max_ev_support = 1 scaffold_6 - intron 42979-43126 asmbl_47959 scaffold_6 - retained_intron 42979-43126 asmbl_47960 // Retained and Spliced Intron # retained_intron 72768-72798 (orient:-) max_ev_support = 1 # spliced_intron 72768-72798 (orient:-) max_ev_support = 1 scaffold_6 - intron 72768-72798 asmbl_47964,asmbl_47965 scaffold_6 - retained_intron 72768-72798 asmbl_47962,asmbl_47963 // Retained and Spliced Intron # retained_intron 73979-74164 (orient:-) max_ev_support = 1 # spliced_intron 73979-74164 (orient:-) max_ev_support = 1 scaffold_6 - intron 73979-74164 asmbl_47963 scaffold_6 - retained_intron 73979-74164 asmbl_47962,asmbl_47964,asmbl_47965 // Retained and Spliced Intron # retained_intron 126870-126945 (orient:-) max_ev_support = 1 # spliced_intron 126870-126945 (orient:-) max_ev_support = 1 scaffold_6 - intron 126870-126945 asmbl_47966,asmbl_47967 scaffold_6 - retained_intron 126870-126945 asmbl_47968 // Retained and Spliced Intron # retained_intron 569633-569861 (orient:-) max_ev_support = 1 # spliced_intron 569633-569861 (orient:-) max_ev_support = 2 scaffold_6 - intron 569633-569861 asmbl_47984 scaffold_6 - retained_intron 569633-569861 asmbl_47985 // Retained and Spliced Intron # retained_intron 796568-796819 (orient:-) max_ev_support = 2 # spliced_intron 796568-796819 (orient:-) max_ev_support = 1 scaffold_6 - intron 796568-796819 asmbl_48012,asmbl_48014 scaffold_6 - retained_intron 796568-796819 asmbl_48011,asmbl_48013 // Retained and Spliced Intron # retained_intron 797115-797273 (orient:-) max_ev_support = 1 # spliced_intron 797115-797273 (orient:-) max_ev_support = 2 scaffold_6 - intron 797115-797273 asmbl_48011,asmbl_48014 scaffold_6 - retained_intron 797115-797273 asmbl_48013 // Retained and Spliced Intron # retained_intron 853752-853844 (orient:-) max_ev_support = 1 # spliced_intron 853752-853844 (orient:-) max_ev_support = 2 scaffold_6 - intron 853752-853844 asmbl_48017,asmbl_48018,asmbl_48020 scaffold_6 - retained_intron 853752-853844 asmbl_48019 // Exon Skipping and Retention # skipped_exon 885515-886409 (orient:-) max_ev_support = 1 # retained_exon 886163-886307 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 886163-886307 asmbl_48031 scaffold_6 - intron_skips_exon 885515-886409 asmbl_48033 // Exon Skipping and Retention # skipped_exon 885682-886780 (orient:-) max_ev_support = 1 # retained_exon 886163-886474 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 886163-886307,886410-886474 asmbl_48031 scaffold_6 - intron_skips_exon 885682-886780 asmbl_48032 // Exon Skipping and Retention # skipped_exon 884795-886162 (orient:-) max_ev_support = 1 # retained_exon 885370-885681 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 885370-885514,885617-885681 asmbl_48032 scaffold_6 - intron_skips_exon 884795-886162 asmbl_48031 // Retained and Spliced Intron # retained_intron 1345974-1346244 (orient:-) max_ev_support = 4 # spliced_intron 1345974-1346244 (orient:-) max_ev_support = 2 scaffold_6 - intron 1345974-1346244 asmbl_48042,asmbl_48045 scaffold_6 - retained_intron 1345974-1346244 asmbl_48041 // Retained and Spliced Intron # retained_intron 1749516-1750052 (orient:-) max_ev_support = 2 # spliced_intron 1749516-1750052 (orient:-) max_ev_support = 2 scaffold_6 - intron 1749516-1750052 asmbl_48058,asmbl_48059,asmbl_48065,asmbl_48066,asmbl_48067 scaffold_6 - retained_intron 1749516-1750052 asmbl_48060,asmbl_48062,asmbl_48068,asmbl_48069 // Exon Skipping and Retention # skipped_exon 2480100-2482402 (orient:-) max_ev_support = 1 # retained_exon 2481736-2481853 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2481736-2481853 asmbl_48075 scaffold_6 - intron_skips_exon 2480100-2482402 asmbl_48079 // Retained and Spliced Intron # retained_intron 2479060-2479128 (orient:-) max_ev_support = 2 # spliced_intron 2479060-2479128 (orient:-) max_ev_support = 1 scaffold_6 - intron 2479060-2479128 asmbl_48078 scaffold_6 - retained_intron 2479060-2479128 asmbl_48076 // Retained and Spliced Intron # retained_intron 2699075-2699232 (orient:-) max_ev_support = 1 # spliced_intron 2699075-2699232 (orient:-) max_ev_support = 1 scaffold_6 - intron 2699075-2699232 asmbl_48099,asmbl_48101 scaffold_6 - retained_intron 2699075-2699232 asmbl_48100 // Exon Skipping and Retention # skipped_exon 2743934-2744894 (orient:-) max_ev_support = 2 # retained_exon 2744391-2744477 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2744391-2744477 asmbl_48106 scaffold_6 - intron_skips_exon 2743934-2744894 asmbl_48107 // Exon Skipping and Retention # skipped_exon 2744478-2745595 (orient:-) max_ev_support = 1 # retained_exon 2744895-2744981 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2744895-2744981 asmbl_48107 scaffold_6 - intron_skips_exon 2744478-2745595 asmbl_48106 // Exon Skipping and Retention # skipped_exon 2843454-2844211 (orient:-) max_ev_support = 2 # retained_exon 2843958-2844035 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 2843958-2844035 asmbl_48115 scaffold_6 - intron_skips_exon 2843454-2844211 asmbl_48116,asmbl_48117 // Exon Skipping and Retention # skipped_exon 2844284-2844733 (orient:-) max_ev_support = 2 # retained_exon 2844585-2844644 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2844585-2844644 asmbl_48117 scaffold_6 - intron_skips_exon 2844284-2844733 asmbl_48115,asmbl_48116 // Exon Skipping and Retention # skipped_exon 2880569-2881381 (orient:-) max_ev_support = 1 # retained_exon 2880868-2881101 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2880868-2881101 asmbl_48126 scaffold_6 - intron_skips_exon 2880569-2881381 asmbl_48128 // Exon Skipping and Retention # skipped_exon 2881102-2881381 (orient:-) max_ev_support = 2 # retained_exon 2881249-2881305 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2881249-2881305 asmbl_48127 scaffold_6 - intron_skips_exon 2881102-2881381 asmbl_48126 // Exon Skipping and Retention # skipped_exon 2925434-2927522 (orient:-) max_ev_support = 1 # retained_exon 2926280-2926388 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 2926280-2926388 asmbl_48140,asmbl_48141 scaffold_6 - intron_skips_exon 2925434-2927522 asmbl_48142,asmbl_48143 // Retained and Spliced Intron # retained_intron 2947048-2947168 (orient:-) max_ev_support = 1 # spliced_intron 2947048-2947168 (orient:-) max_ev_support = 2 scaffold_6 - intron 2947048-2947168 asmbl_48152 scaffold_6 - retained_intron 2947048-2947168 asmbl_48153 // Exon Skipping and Retention # skipped_exon 3041154-3042596 (orient:-) max_ev_support = 2 # retained_exon 3041413-3042317 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3041413-3041909,3042228-3042317 asmbl_48165 scaffold_6 - intron_skips_exon 3041154-3042596 asmbl_48167 // Exon Skipping and Retention # skipped_exon 3041910-3042596 (orient:-) max_ev_support = 2 # retained_exon 3042228-3042317 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 3042228-3042317 asmbl_48165 scaffold_6 - intron_skips_exon 3041910-3042596 asmbl_48166 // Retained and Spliced Intron # retained_intron 3218305-3218462 (orient:-) max_ev_support = 2 # spliced_intron 3218305-3218462 (orient:-) max_ev_support = 1 scaffold_6 - intron 3218305-3218462 asmbl_48179,asmbl_48180 scaffold_6 - retained_intron 3218305-3218462 asmbl_48177,asmbl_48178 // Exon Skipping and Retention # skipped_exon 3320407-3320929 (orient:-) max_ev_support = 2 # retained_exon 3320658-3320770 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 3320658-3320770 asmbl_48191 scaffold_6 - intron_skips_exon 3320407-3320929 asmbl_48193 // Exon Skipping and Retention # skipped_exon 3320407-3320916 (orient:-) max_ev_support = 1 # retained_exon 3320658-3320770 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 3320658-3320770 asmbl_48191 scaffold_6 - intron_skips_exon 3320407-3320916 asmbl_48194 // Retained and Spliced Intron # retained_intron 3320771-3320929 (orient:-) max_ev_support = 1 # spliced_intron 3320771-3320929 (orient:-) max_ev_support = 2 scaffold_6 - intron 3320771-3320929 asmbl_48191 scaffold_6 - retained_intron 3320771-3320929 asmbl_48192 // Retained and Spliced Intron # retained_intron 3564649-3564671 (orient:-) max_ev_support = 2 # spliced_intron 3564649-3564671 (orient:-) max_ev_support = 1 scaffold_6 - intron 3564649-3564671 asmbl_48215 scaffold_6 - retained_intron 3564649-3564671 asmbl_48214 // Exon Skipping and Retention # skipped_exon 4279650-4280395 (orient:-) max_ev_support = 1 # retained_exon 4279832-4279983 (orient:-) max_ev_support = 4 scaffold_6 - retained_exons 4279832-4279983 asmbl_48245 scaffold_6 - intron_skips_exon 4279650-4280395 asmbl_48247 // Retained and Spliced Intron # retained_intron 4519219-4519479 (orient:-) max_ev_support = 2 # spliced_intron 4519219-4519479 (orient:-) max_ev_support = 2 scaffold_6 - intron 4519219-4519479 asmbl_48273 scaffold_6 - retained_intron 4519219-4519479 asmbl_48274 // Retained and Spliced Intron # retained_intron 4535550-4536418 (orient:-) max_ev_support = 3 # spliced_intron 4535550-4536418 (orient:-) max_ev_support = 2 scaffold_6 - intron 4535550-4536418 asmbl_48281 scaffold_6 - retained_intron 4535550-4536418 asmbl_48279,asmbl_48280 // Retained and Spliced Intron # retained_intron 4826646-4826724 (orient:-) max_ev_support = 1 # spliced_intron 4826646-4826724 (orient:-) max_ev_support = 2 scaffold_6 - intron 4826646-4826724 asmbl_48301 scaffold_6 - retained_intron 4826646-4826724 asmbl_48302 // Retained and Spliced Intron # retained_intron 4832299-4832373 (orient:-) max_ev_support = 1 # spliced_intron 4832299-4832373 (orient:-) max_ev_support = 2 scaffold_6 - intron 4832299-4832373 asmbl_48304 scaffold_6 - retained_intron 4832299-4832373 asmbl_48305 // Exon Skipping and Retention # skipped_exon 4931559-4933652 (orient:-) max_ev_support = 2 # retained_exon 4932958-4933047 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 4932958-4933047 asmbl_48314 scaffold_6 - intron_skips_exon 4931559-4933652 asmbl_48313 // Retained and Spliced Intron # retained_intron 4962197-4962323 (orient:-) max_ev_support = 1 # spliced_intron 4962197-4962323 (orient:-) max_ev_support = 1 scaffold_6 - intron 4962197-4962323 asmbl_48317 scaffold_6 - retained_intron 4962197-4962323 asmbl_48318 // Retained and Spliced Intron # retained_intron 5021998-5022641 (orient:-) max_ev_support = 5 # spliced_intron 5021998-5022641 (orient:-) max_ev_support = 1 scaffold_6 - intron 5021998-5022641 asmbl_48328 scaffold_6 - retained_intron 5021998-5022641 asmbl_48327 // Retained and Spliced Intron # retained_intron 5054843-5054934 (orient:-) max_ev_support = 3 # spliced_intron 5054843-5054934 (orient:-) max_ev_support = 2 scaffold_6 - intron 5054843-5054934 asmbl_48331,asmbl_48332,asmbl_48336 scaffold_6 - retained_intron 5054843-5054934 asmbl_48330 // Retained and Spliced Intron # retained_intron 5084001-5084167 (orient:-) max_ev_support = 1 # spliced_intron 5084001-5084167 (orient:-) max_ev_support = 2 scaffold_6 - intron 5084001-5084167 asmbl_48339 scaffold_6 - retained_intron 5084001-5084167 asmbl_48340 // Retained and Spliced Intron # retained_intron 5438307-5438405 (orient:-) max_ev_support = 1 # spliced_intron 5438307-5438405 (orient:-) max_ev_support = 2 scaffold_6 - intron 5438307-5438405 asmbl_48363 scaffold_6 - retained_intron 5438307-5438405 asmbl_48364 // Retained and Spliced Intron # retained_intron 5644143-5644250 (orient:-) max_ev_support = 2 # spliced_intron 5644143-5644250 (orient:-) max_ev_support = 4 scaffold_6 - intron 5644143-5644250 asmbl_48367 scaffold_6 - retained_intron 5644143-5644250 asmbl_48368 // Retained and Spliced Intron # retained_intron 6708324-6709026 (orient:-) max_ev_support = 1 # spliced_intron 6708324-6709026 (orient:-) max_ev_support = 2 scaffold_6 - intron 6708324-6709026 asmbl_48400 scaffold_6 - retained_intron 6708324-6709026 asmbl_48401 // Retained and Spliced Intron # retained_intron 6755355-6755511 (orient:-) max_ev_support = 1 # spliced_intron 6755355-6755511 (orient:-) max_ev_support = 1 scaffold_6 - intron 6755355-6755511 asmbl_48404 scaffold_6 - retained_intron 6755355-6755511 asmbl_48403 // Retained and Spliced Intron # retained_intron 7185172-7185279 (orient:-) max_ev_support = 2 # spliced_intron 7185172-7185279 (orient:-) max_ev_support = 2 scaffold_6 - intron 7185172-7185279 asmbl_48417,asmbl_48418 scaffold_6 - retained_intron 7185172-7185279 asmbl_48416 // Retained and Spliced Intron # retained_intron 7185667-7185920 (orient:-) max_ev_support = 1 # spliced_intron 7185667-7185920 (orient:-) max_ev_support = 2 scaffold_6 - intron 7185667-7185920 asmbl_48416,asmbl_48417 scaffold_6 - retained_intron 7185667-7185920 asmbl_48418 // Retained and Spliced Intron # retained_intron 7515546-7515851 (orient:-) max_ev_support = 3 # spliced_intron 7515546-7515851 (orient:-) max_ev_support = 1 scaffold_6 - intron 7515546-7515851 asmbl_48437 scaffold_6 - retained_intron 7515546-7515851 asmbl_48432,asmbl_48433 // Retained and Spliced Intron # retained_intron 7516477-7516579 (orient:-) max_ev_support = 2 # spliced_intron 7516477-7516579 (orient:-) max_ev_support = 2 scaffold_6 - intron 7516477-7516579 asmbl_48435 scaffold_6 - retained_intron 7516477-7516579 asmbl_48434 // Retained and Spliced Intron # retained_intron 7516477-7517141 (orient:-) max_ev_support = 2 # spliced_intron 7516477-7517141 (orient:-) max_ev_support = 1 scaffold_6 - intron 7516477-7517141 asmbl_48433,asmbl_48436 scaffold_6 - retained_intron 7516477-7517141 asmbl_48434 // Retained and Spliced Intron # retained_intron 7516493-7516579 (orient:-) max_ev_support = 2 # spliced_intron 7516493-7516579 (orient:-) max_ev_support = 1 scaffold_6 - intron 7516493-7516579 asmbl_48432,asmbl_48437 scaffold_6 - retained_intron 7516493-7516579 asmbl_48434 // Exon Skipping and Retention # skipped_exon 7515546-7516117 (orient:-) max_ev_support = 2 # retained_exon 7515852-7515923 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 7515852-7515923 asmbl_48437 scaffold_6 - intron_skips_exon 7515546-7516117 asmbl_48434,asmbl_48435,asmbl_48436 // Retained and Spliced Intron # retained_intron 7937253-7937838 (orient:-) max_ev_support = 2 # spliced_intron 7937253-7937838 (orient:-) max_ev_support = 1 scaffold_6 - intron 7937253-7937838 asmbl_48453 scaffold_6 - retained_intron 7937253-7937838 asmbl_48445,asmbl_48446,asmbl_48447,asmbl_48449,asmbl_48450 // Retained and Spliced Intron # retained_intron 7937253-7938427 (orient:-) max_ev_support = 2 # spliced_intron 7937253-7938427 (orient:-) max_ev_support = 1 scaffold_6 - intron 7937253-7938427 asmbl_48448,asmbl_48451,asmbl_48452 scaffold_6 - retained_intron 7937253-7938427 asmbl_48445,asmbl_48446,asmbl_48447,asmbl_48449,asmbl_48450 // Retained and Spliced Intron # retained_intron 7935430-7936138 (orient:-) max_ev_support = 1 # spliced_intron 7935430-7936138 (orient:-) max_ev_support = 2 scaffold_6 - intron 7935430-7936138 asmbl_48445,asmbl_48447,asmbl_48448,asmbl_48449,asmbl_48452,asmbl_48453 scaffold_6 - retained_intron 7935430-7936138 asmbl_48446,asmbl_48450,asmbl_48451 // Retained and Spliced Intron # retained_intron 7936991-7937104 (orient:-) max_ev_support = 1 # spliced_intron 7936991-7937104 (orient:-) max_ev_support = 1 scaffold_6 - intron 7936991-7937104 asmbl_48452 scaffold_6 - retained_intron 7936991-7937104 asmbl_48447,asmbl_48450 // Retained and Spliced Intron # retained_intron 7936991-7937111 (orient:-) max_ev_support = 1 # spliced_intron 7936991-7937111 (orient:-) max_ev_support = 2 scaffold_6 - intron 7936991-7937111 asmbl_48445,asmbl_48446,asmbl_48448,asmbl_48449,asmbl_48451,asmbl_48453 scaffold_6 - retained_intron 7936991-7937111 asmbl_48447,asmbl_48450 // Retained and Spliced Intron # retained_intron 8164348-8164374 (orient:-) max_ev_support = 1 # spliced_intron 8164348-8164374 (orient:-) max_ev_support = 1 scaffold_6 - intron 8164348-8164374 asmbl_48470 scaffold_6 - retained_intron 8164348-8164374 asmbl_48469 // Retained and Spliced Intron # retained_intron 8172023-8172117 (orient:-) max_ev_support = 2 # spliced_intron 8172023-8172117 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172023-8172117 asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48481 scaffold_6 - retained_intron 8172023-8172117 asmbl_48471,asmbl_48472,asmbl_48473,asmbl_48474,asmbl_48480 // Retained and Spliced Intron # retained_intron 8172176-8172279 (orient:-) max_ev_support = 2 # spliced_intron 8172176-8172279 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172176-8172279 asmbl_48474,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481 scaffold_6 - retained_intron 8172176-8172279 asmbl_48471,asmbl_48472,asmbl_48473 // Retained and Spliced Intron # retained_intron 8172324-8172399 (orient:-) max_ev_support = 2 # spliced_intron 8172324-8172399 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172324-8172399 asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481 scaffold_6 - retained_intron 8172324-8172399 asmbl_48471,asmbl_48472,asmbl_48473,asmbl_48474 // Retained and Spliced Intron # retained_intron 8172579-8172708 (orient:-) max_ev_support = 4 # spliced_intron 8172579-8172708 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172579-8172708 asmbl_48474,asmbl_48475 scaffold_6 - retained_intron 8172579-8172708 asmbl_48471,asmbl_48472,asmbl_48473 // Retained and Spliced Intron # retained_intron 8172579-8172828 (orient:-) max_ev_support = 4 # spliced_intron 8172579-8172828 (orient:-) max_ev_support = 2 scaffold_6 - intron 8172579-8172828 asmbl_48476,asmbl_48479,asmbl_48480,asmbl_48481 scaffold_6 - retained_intron 8172579-8172828 asmbl_48471,asmbl_48472,asmbl_48473 // Retained and Spliced Intron # retained_intron 8175225-8175459 (orient:-) max_ev_support = 2 # spliced_intron 8175225-8175459 (orient:-) max_ev_support = 1 scaffold_6 - intron 8175225-8175459 asmbl_48473,asmbl_48479 scaffold_6 - retained_intron 8175225-8175459 asmbl_48472,asmbl_48475,asmbl_48476,asmbl_48480 // Retained and Spliced Intron # retained_intron 8171724-8171933 (orient:-) max_ev_support = 1 # spliced_intron 8171724-8171933 (orient:-) max_ev_support = 2 scaffold_6 - intron 8171724-8171933 asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48481 scaffold_6 - retained_intron 8171724-8171933 asmbl_48474,asmbl_48480 // Exon Skipping and Retention # skipped_exon 8172579-8172828 (orient:-) max_ev_support = 2 # retained_exon 8172709-8172799 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 8172709-8172799 asmbl_48474 scaffold_6 - intron_skips_exon 8172579-8172828 asmbl_48476,asmbl_48479,asmbl_48480 // Retained and Spliced Intron # retained_intron 8173890-8174001 (orient:-) max_ev_support = 2 # spliced_intron 8173890-8174001 (orient:-) max_ev_support = 2 scaffold_6 - intron 8173890-8174001 asmbl_48472,asmbl_48473,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480 scaffold_6 - retained_intron 8173890-8174001 asmbl_48474,asmbl_48478 // Retained and Spliced Intron # retained_intron 8174054-8174789 (orient:-) max_ev_support = 2 # spliced_intron 8174054-8174789 (orient:-) max_ev_support = 2 scaffold_6 - intron 8174054-8174789 asmbl_48472,asmbl_48473,asmbl_48475,asmbl_48476,asmbl_48479,asmbl_48480 scaffold_6 - retained_intron 8174054-8174789 asmbl_48474,asmbl_48478 // Exon Skipping and Retention # skipped_exon 8172800-8173560 (orient:-) max_ev_support = 2 # retained_exon 8172829-8172944 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 8172829-8172944 asmbl_48476,asmbl_48479,asmbl_48480 scaffold_6 - intron_skips_exon 8172800-8173560 asmbl_48474 // Retained and Spliced Intron # retained_intron 8173665-8173844 (orient:-) max_ev_support = 2 # spliced_intron 8173665-8173844 (orient:-) max_ev_support = 2 scaffold_6 - intron 8173665-8173844 asmbl_48472,asmbl_48473,asmbl_48474,asmbl_48475,asmbl_48476,asmbl_48478,asmbl_48479,asmbl_48480 scaffold_6 - retained_intron 8173665-8173844 asmbl_48477 // Retained and Spliced Intron # retained_intron 8475432-8475513 (orient:-) max_ev_support = 1 # spliced_intron 8475432-8475513 (orient:-) max_ev_support = 2 scaffold_6 - intron 8475432-8475513 asmbl_48496 scaffold_6 - retained_intron 8475432-8475513 asmbl_48497 // Retained and Spliced Intron # retained_intron 8636212-8636466 (orient:-) max_ev_support = 3 # spliced_intron 8636212-8636466 (orient:-) max_ev_support = 3 scaffold_6 - intron 8636212-8636466 asmbl_48510 scaffold_6 - retained_intron 8636212-8636466 asmbl_48509 // Retained and Spliced Intron # retained_intron 8878330-8878408 (orient:-) max_ev_support = 1 # spliced_intron 8878330-8878408 (orient:-) max_ev_support = 2 scaffold_6 - intron 8878330-8878408 asmbl_48529 scaffold_6 - retained_intron 8878330-8878408 asmbl_48530 // Retained and Spliced Intron # retained_intron 8922099-8922181 (orient:-) max_ev_support = 3 # spliced_intron 8922099-8922181 (orient:-) max_ev_support = 1 scaffold_6 - intron 8922099-8922181 asmbl_48536 scaffold_6 - retained_intron 8922099-8922181 asmbl_48535 // Retained and Spliced Intron # retained_intron 9091532-9091638 (orient:-) max_ev_support = 2 # spliced_intron 9091532-9091638 (orient:-) max_ev_support = 2 scaffold_6 - intron 9091532-9091638 asmbl_48539 scaffold_6 - retained_intron 9091532-9091638 asmbl_48538 // Exon Skipping and Retention # skipped_exon 9150989-9151553 (orient:-) max_ev_support = 2 # retained_exon 9151246-9151291 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 9151246-9151291 asmbl_48541,asmbl_48542 scaffold_6 - intron_skips_exon 9150989-9151553 asmbl_48540,asmbl_48543 // Retained and Spliced Intron # retained_intron 10958023-10958151 (orient:-) max_ev_support = 1 # spliced_intron 10958023-10958151 (orient:-) max_ev_support = 2 scaffold_6 - intron 10958023-10958151 asmbl_48661 scaffold_6 - retained_intron 10958023-10958151 asmbl_48662 // Retained and Spliced Intron # retained_intron 11114758-11114940 (orient:-) max_ev_support = 3 # spliced_intron 11114758-11114940 (orient:-) max_ev_support = 2 scaffold_6 - intron 11114758-11114940 asmbl_48676,asmbl_48677,asmbl_48678 scaffold_6 - retained_intron 11114758-11114940 asmbl_48675 // Retained and Spliced Intron # retained_intron 11456049-11456165 (orient:-) max_ev_support = 2 # spliced_intron 11456049-11456165 (orient:-) max_ev_support = 2 scaffold_6 - intron 11456049-11456165 asmbl_48688 scaffold_6 - retained_intron 11456049-11456165 asmbl_48689 // Retained and Spliced Intron # retained_intron 11463538-11463675 (orient:-) max_ev_support = 1 # spliced_intron 11463538-11463675 (orient:-) max_ev_support = 2 scaffold_6 - intron 11463538-11463675 asmbl_48691,asmbl_48692 scaffold_6 - retained_intron 11463538-11463675 asmbl_48693 // Retained and Spliced Intron # retained_intron 11464105-11464309 (orient:-) max_ev_support = 1 # spliced_intron 11464105-11464309 (orient:-) max_ev_support = 2 scaffold_6 - intron 11464105-11464309 asmbl_48691,asmbl_48692 scaffold_6 - retained_intron 11464105-11464309 asmbl_48693 // Retained and Spliced Intron # retained_intron 12034964-12035191 (orient:-) max_ev_support = 2 # spliced_intron 12034964-12035191 (orient:-) max_ev_support = 2 scaffold_6 - intron 12034964-12035191 asmbl_48715 scaffold_6 - retained_intron 12034964-12035191 asmbl_48716 // Retained and Spliced Intron # retained_intron 12053399-12053576 (orient:-) max_ev_support = 2 # spliced_intron 12053399-12053576 (orient:-) max_ev_support = 2 scaffold_6 - intron 12053399-12053576 asmbl_48720 scaffold_6 - retained_intron 12053399-12053576 asmbl_48719 // Retained and Spliced Intron # retained_intron 12087982-12088116 (orient:-) max_ev_support = 2 # spliced_intron 12087982-12088116 (orient:-) max_ev_support = 1 scaffold_6 - intron 12087982-12088116 asmbl_48729,asmbl_48730 scaffold_6 - retained_intron 12087982-12088116 asmbl_48728,asmbl_48731 // Exon Skipping and Retention # skipped_exon 12090541-12092555 (orient:-) max_ev_support = 2 # retained_exon 12092341-12092391 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 12092341-12092391 asmbl_48733 scaffold_6 - intron_skips_exon 12090541-12092555 asmbl_48732 // Retained and Spliced Intron # retained_intron 12413720-12414317 (orient:-) max_ev_support = 3 # spliced_intron 12413720-12414317 (orient:-) max_ev_support = 1 scaffold_6 - intron 12413720-12414317 asmbl_48740 scaffold_6 - retained_intron 12413720-12414317 asmbl_48736,asmbl_48737,asmbl_48738,asmbl_48739 // Retained and Spliced Intron # retained_intron 12415798-12415973 (orient:-) max_ev_support = 3 # spliced_intron 12415798-12415973 (orient:-) max_ev_support = 1 scaffold_6 - intron 12415798-12415973 asmbl_48739 scaffold_6 - retained_intron 12415798-12415973 asmbl_48736,asmbl_48737,asmbl_48738,asmbl_48740 // Exon Skipping and Retention # skipped_exon 12520208-12521211 (orient:-) max_ev_support = 1 # retained_exon 12520880-12521077 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 12520880-12521077 asmbl_48748 scaffold_6 - intron_skips_exon 12520208-12521211 asmbl_48751 // Exon Skipping and Retention # skipped_exon 12550525-12553416 (orient:-) max_ev_support = 1 # retained_exon 12551792-12551883 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 12551792-12551883 asmbl_48759,asmbl_48762 scaffold_6 - intron_skips_exon 12550525-12553416 asmbl_48760,asmbl_48763 // Retained and Spliced Intron # retained_intron 12552240-12553416 (orient:-) max_ev_support = 1 # spliced_intron 12552240-12553416 (orient:-) max_ev_support = 1 scaffold_6 - intron 12552240-12553416 asmbl_48761 scaffold_6 - retained_intron 12552240-12553416 asmbl_48759,asmbl_48762 // Retained and Spliced Intron # retained_intron 12554228-12554438 (orient:-) max_ev_support = 1 # spliced_intron 12554228-12554438 (orient:-) max_ev_support = 1 scaffold_6 - intron 12554228-12554438 asmbl_48759,asmbl_48760,asmbl_48761,asmbl_48762,asmbl_48763 scaffold_6 - retained_intron 12554228-12554438 asmbl_48764 // Retained and Spliced Intron # retained_intron 12628524-12628614 (orient:-) max_ev_support = 1 # spliced_intron 12628524-12628614 (orient:-) max_ev_support = 3 scaffold_6 - intron 12628524-12628614 asmbl_48769,asmbl_48770,asmbl_48771,asmbl_48774 scaffold_6 - retained_intron 12628524-12628614 asmbl_48773,asmbl_48775 // Retained and Spliced Intron # retained_intron 12990908-12991437 (orient:-) max_ev_support = 3 # spliced_intron 12990908-12991437 (orient:-) max_ev_support = 2 scaffold_6 - intron 12990908-12991437 asmbl_48794,asmbl_48796,asmbl_48797 scaffold_6 - retained_intron 12990908-12991437 asmbl_48792,asmbl_48793,asmbl_48795 // Retained and Spliced Intron # retained_intron 12991556-12992335 (orient:-) max_ev_support = 3 # spliced_intron 12991556-12992335 (orient:-) max_ev_support = 2 scaffold_6 - intron 12991556-12992335 asmbl_48794,asmbl_48796 scaffold_6 - retained_intron 12991556-12992335 asmbl_48793,asmbl_48795 // Retained and Spliced Intron # retained_intron 12992093-12992335 (orient:-) max_ev_support = 3 # spliced_intron 12992093-12992335 (orient:-) max_ev_support = 3 scaffold_6 - intron 12992093-12992335 asmbl_48792,asmbl_48797 scaffold_6 - retained_intron 12992093-12992335 asmbl_48793,asmbl_48795 // Retained and Spliced Intron # retained_intron 13000458-13000538 (orient:-) max_ev_support = 2 # spliced_intron 13000458-13000538 (orient:-) max_ev_support = 3 scaffold_6 - intron 13000458-13000538 asmbl_48792,asmbl_48793,asmbl_48794,asmbl_48797,asmbl_48799,asmbl_48800,asmbl_48801,asmbl_48804 scaffold_6 - retained_intron 13000458-13000538 asmbl_48795,asmbl_48796,asmbl_48802,asmbl_48803,asmbl_48805 // Retained and Spliced Intron # retained_intron 13005188-13005430 (orient:-) max_ev_support = 3 # spliced_intron 13005188-13005430 (orient:-) max_ev_support = 2 scaffold_6 - intron 13005188-13005430 asmbl_48808 scaffold_6 - retained_intron 13005188-13005430 asmbl_48798 // Retained and Spliced Intron # retained_intron 12999352-12999538 (orient:-) max_ev_support = 3 # spliced_intron 12999352-12999538 (orient:-) max_ev_support = 3 scaffold_6 - intron 12999352-12999538 asmbl_48800,asmbl_48802 scaffold_6 - retained_intron 12999352-12999538 asmbl_48801,asmbl_48803 // Retained and Spliced Intron # retained_intron 12999352-13000120 (orient:-) max_ev_support = 3 # spliced_intron 12999352-13000120 (orient:-) max_ev_support = 3 scaffold_6 - intron 12999352-13000120 asmbl_48799 scaffold_6 - retained_intron 12999352-13000120 asmbl_48801,asmbl_48803 // Exon Skipping and Retention # skipped_exon 13059727-13060614 (orient:-) max_ev_support = 1 # retained_exon 13060364-13060448 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 13060364-13060448 asmbl_48810,asmbl_48811 scaffold_6 - intron_skips_exon 13059727-13060614 asmbl_48812 // Retained and Spliced Intron # retained_intron 13064215-13064365 (orient:-) max_ev_support = 2 # spliced_intron 13064215-13064365 (orient:-) max_ev_support = 1 scaffold_6 - intron 13064215-13064365 asmbl_48811 scaffold_6 - retained_intron 13064215-13064365 asmbl_48810,asmbl_48812,asmbl_48813 // Exon Skipping and Retention # skipped_exon 13132632-13134965 (orient:-) max_ev_support = 3 # retained_exon 13133948-13134017 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 13133948-13134017 asmbl_48820 scaffold_6 - intron_skips_exon 13132632-13134965 asmbl_48819 // Retained and Spliced Intron # retained_intron 13167852-13167977 (orient:-) max_ev_support = 3 # spliced_intron 13167852-13167977 (orient:-) max_ev_support = 2 scaffold_6 - intron 13167852-13167977 asmbl_48824,asmbl_48827 scaffold_6 - retained_intron 13167852-13167977 asmbl_48823 // Retained and Spliced Intron # retained_intron 13168142-13168655 (orient:-) max_ev_support = 3 # spliced_intron 13168142-13168655 (orient:-) max_ev_support = 2 scaffold_6 - intron 13168142-13168655 asmbl_48824,asmbl_48827 scaffold_6 - retained_intron 13168142-13168655 asmbl_48823 // Retained and Spliced Intron # retained_intron 13178612-13178919 (orient:-) max_ev_support = 3 # spliced_intron 13178612-13178919 (orient:-) max_ev_support = 4 scaffold_6 - intron 13178612-13178919 asmbl_48830 scaffold_6 - retained_intron 13178612-13178919 asmbl_48831 // Exon Skipping and Retention # skipped_exon 13249787-13250829 (orient:-) max_ev_support = 1 # retained_exon 13250309-13250661 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 13250309-13250388,13250578-13250661 asmbl_48838 scaffold_6 - intron_skips_exon 13249787-13250829 asmbl_48839 // Retained and Spliced Intron # retained_intron 13246578-13246726 (orient:-) max_ev_support = 1 # spliced_intron 13246578-13246726 (orient:-) max_ev_support = 1 scaffold_6 - intron 13246578-13246726 asmbl_48838,asmbl_48839 scaffold_6 - retained_intron 13246578-13246726 asmbl_48840 // Retained and Spliced Intron # retained_intron 13575827-13577850 (orient:-) max_ev_support = 1 # spliced_intron 13575827-13577850 (orient:-) max_ev_support = 1 scaffold_6 - intron 13575827-13577850 asmbl_48852 scaffold_6 - retained_intron 13575827-13577850 asmbl_48851 // Retained and Spliced Intron # retained_intron 13577498-13577850 (orient:-) max_ev_support = 1 # spliced_intron 13577498-13577850 (orient:-) max_ev_support = 1 scaffold_6 - intron 13577498-13577850 asmbl_48850 scaffold_6 - retained_intron 13577498-13577850 asmbl_48851 // Retained and Spliced Intron # retained_intron 13573595-13573738 (orient:-) max_ev_support = 2 # spliced_intron 13573595-13573738 (orient:-) max_ev_support = 2 scaffold_6 - intron 13573595-13573738 asmbl_48850,asmbl_48851,asmbl_48852 scaffold_6 - retained_intron 13573595-13573738 asmbl_48853 // Retained and Spliced Intron # retained_intron 13573776-13573887 (orient:-) max_ev_support = 2 # spliced_intron 13573776-13573887 (orient:-) max_ev_support = 2 scaffold_6 - intron 13573776-13573887 asmbl_48850,asmbl_48851,asmbl_48852,asmbl_48854 scaffold_6 - retained_intron 13573776-13573887 asmbl_48853 // Retained and Spliced Intron # retained_intron 13574733-13575353 (orient:-) max_ev_support = 2 # spliced_intron 13574733-13575353 (orient:-) max_ev_support = 2 scaffold_6 - intron 13574733-13575353 asmbl_48850,asmbl_48851,asmbl_48852 scaffold_6 - retained_intron 13574733-13575353 asmbl_48854,asmbl_48855 // Retained and Spliced Intron # retained_intron 13657677-13658201 (orient:-) max_ev_support = 1 # spliced_intron 13657677-13658201 (orient:-) max_ev_support = 1 scaffold_6 - intron 13657677-13658201 asmbl_48866 scaffold_6 - retained_intron 13657677-13658201 asmbl_48864 // Retained and Spliced Intron # retained_intron 13710244-13710366 (orient:-) max_ev_support = 1 # spliced_intron 13710244-13710366 (orient:-) max_ev_support = 2 scaffold_6 - intron 13710244-13710366 asmbl_48874,asmbl_48876 scaffold_6 - retained_intron 13710244-13710366 asmbl_48875 // Retained and Spliced Intron # retained_intron 13726449-13726589 (orient:-) max_ev_support = 2 # spliced_intron 13726449-13726589 (orient:-) max_ev_support = 3 scaffold_6 - intron 13726449-13726589 asmbl_48881 scaffold_6 - retained_intron 13726449-13726589 asmbl_48882 // Retained and Spliced Intron # retained_intron 13877179-13877346 (orient:-) max_ev_support = 1 # spliced_intron 13877179-13877346 (orient:-) max_ev_support = 2 scaffold_6 - intron 13877179-13877346 asmbl_48885 scaffold_6 - retained_intron 13877179-13877346 asmbl_48886 // Exon Skipping and Retention # skipped_exon 13908669-13909022 (orient:-) max_ev_support = 1 # retained_exon 13908796-13908858 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 13908796-13908858 asmbl_48890 scaffold_6 - intron_skips_exon 13908669-13909022 asmbl_48891 // Retained and Spliced Intron # retained_intron 13919016-13919128 (orient:-) max_ev_support = 2 # spliced_intron 13919016-13919128 (orient:-) max_ev_support = 2 scaffold_6 - intron 13919016-13919128 asmbl_48894 scaffold_6 - retained_intron 13919016-13919128 asmbl_48895,asmbl_48898 // Retained and Spliced Intron # retained_intron 13919016-13919162 (orient:-) max_ev_support = 2 # spliced_intron 13919016-13919162 (orient:-) max_ev_support = 1 scaffold_6 - intron 13919016-13919162 asmbl_48896 scaffold_6 - retained_intron 13919016-13919162 asmbl_48895,asmbl_48898 // Retained and Spliced Intron # retained_intron 13917524-13917641 (orient:-) max_ev_support = 1 # spliced_intron 13917524-13917641 (orient:-) max_ev_support = 2 scaffold_6 - intron 13917524-13917641 asmbl_48892,asmbl_48894,asmbl_48895,asmbl_48896 scaffold_6 - retained_intron 13917524-13917641 asmbl_48897,asmbl_48898 // Retained and Spliced Intron # retained_intron 13988163-13988265 (orient:-) max_ev_support = 2 # spliced_intron 13988163-13988265 (orient:-) max_ev_support = 1 scaffold_6 - intron 13988163-13988265 asmbl_48909 scaffold_6 - retained_intron 13988163-13988265 asmbl_48905,asmbl_48911 // Retained and Spliced Intron # retained_intron 14175055-14175078 (orient:-) max_ev_support = 2 # spliced_intron 14175055-14175078 (orient:-) max_ev_support = 1 scaffold_6 - intron 14175055-14175078 asmbl_48929 scaffold_6 - retained_intron 14175055-14175078 asmbl_48925,asmbl_48926,asmbl_48927,asmbl_48928 // Retained and Spliced Intron # retained_intron 14175901-14176174 (orient:-) max_ev_support = 1 # spliced_intron 14175901-14176174 (orient:-) max_ev_support = 2 scaffold_6 - intron 14175901-14176174 asmbl_48925,asmbl_48927,asmbl_48928,asmbl_48929 scaffold_6 - retained_intron 14175901-14176174 asmbl_48926 // Retained and Spliced Intron # retained_intron 14179224-14179390 (orient:-) max_ev_support = 1 # spliced_intron 14179224-14179390 (orient:-) max_ev_support = 2 scaffold_6 - intron 14179224-14179390 asmbl_48925,asmbl_48926,asmbl_48929 scaffold_6 - retained_intron 14179224-14179390 asmbl_48927 // Retained and Spliced Intron # retained_intron 14252463-14253506 (orient:-) max_ev_support = 3 # spliced_intron 14252463-14253506 (orient:-) max_ev_support = 1 scaffold_6 - intron 14252463-14253506 asmbl_48933 scaffold_6 - retained_intron 14252463-14253506 asmbl_48932 // Retained and Spliced Intron # retained_intron 14512780-14513103 (orient:-) max_ev_support = 2 # spliced_intron 14512780-14513103 (orient:-) max_ev_support = 1 scaffold_6 - intron 14512780-14513103 asmbl_48949 scaffold_6 - retained_intron 14512780-14513103 asmbl_48947 // Exon Skipping and Retention # skipped_exon 14622505-14623328 (orient:-) max_ev_support = 1 # retained_exon 14622605-14623228 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 14622605-14623228 asmbl_48951 scaffold_6 - intron_skips_exon 14622505-14623328 asmbl_48953 // Retained and Spliced Intron # retained_intron 14639697-14639780 (orient:-) max_ev_support = 1 # spliced_intron 14639697-14639780 (orient:-) max_ev_support = 2 scaffold_6 - intron 14639697-14639780 asmbl_48956 scaffold_6 - retained_intron 14639697-14639780 asmbl_48957 // Retained and Spliced Intron # retained_intron 15087115-15087248 (orient:-) max_ev_support = 1 # spliced_intron 15087115-15087248 (orient:-) max_ev_support = 1 scaffold_6 - intron 15087115-15087248 asmbl_48987 scaffold_6 - retained_intron 15087115-15087248 asmbl_48986 // Retained and Spliced Intron # retained_intron 15760487-15760603 (orient:-) max_ev_support = 2 # spliced_intron 15760487-15760603 (orient:-) max_ev_support = 1 scaffold_6 - intron 15760487-15760603 asmbl_49020,asmbl_49021 scaffold_6 - retained_intron 15760487-15760603 asmbl_49018 // Retained and Spliced Intron # retained_intron 15759616-15760387 (orient:-) max_ev_support = 1 # spliced_intron 15759616-15760387 (orient:-) max_ev_support = 1 scaffold_6 - intron 15759616-15760387 asmbl_49021 scaffold_6 - retained_intron 15759616-15760387 asmbl_49020 // Retained and Spliced Intron # retained_intron 16104047-16104276 (orient:-) max_ev_support = 1 # spliced_intron 16104047-16104276 (orient:-) max_ev_support = 1 scaffold_6 - intron 16104047-16104276 asmbl_49039 scaffold_6 - retained_intron 16104047-16104276 asmbl_49040 // Retained and Spliced Intron # retained_intron 16272558-16272579 (orient:-) max_ev_support = 2 # spliced_intron 16272558-16272579 (orient:-) max_ev_support = 1 scaffold_6 - intron 16272558-16272579 asmbl_49043 scaffold_6 - retained_intron 16272558-16272579 asmbl_49042 // Exon Skipping and Retention # skipped_exon 16595070-16596107 (orient:-) max_ev_support = 2 # retained_exon 16595769-16595889 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 16595769-16595889 asmbl_49079,asmbl_49080 scaffold_6 - intron_skips_exon 16595070-16596107 asmbl_49078 // Exon Skipping and Retention # skipped_exon 16620658-16622847 (orient:-) max_ev_support = 2 # retained_exon 16621164-16621258 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 16621164-16621258 asmbl_49086 scaffold_6 - intron_skips_exon 16620658-16622847 asmbl_49085 // Retained and Spliced Intron # retained_intron 16876680-16876794 (orient:-) max_ev_support = 2 # spliced_intron 16876680-16876794 (orient:-) max_ev_support = 2 scaffold_6 - intron 16876680-16876794 asmbl_49105 scaffold_6 - retained_intron 16876680-16876794 asmbl_49106 // Retained and Spliced Intron # retained_intron 16876680-16877084 (orient:-) max_ev_support = 2 # spliced_intron 16876680-16877084 (orient:-) max_ev_support = 2 scaffold_6 - intron 16876680-16877084 asmbl_49104 scaffold_6 - retained_intron 16876680-16877084 asmbl_49106 // Exon Skipping and Retention # skipped_exon 16887339-16888617 (orient:-) max_ev_support = 3 # retained_exon 16888019-16888129 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 16888019-16888129 asmbl_49110 scaffold_6 - intron_skips_exon 16887339-16888617 asmbl_49109 // Exon Skipping and Retention # skipped_exon 16887339-16888534 (orient:-) max_ev_support = 2 # retained_exon 16888019-16888129 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 16888019-16888129 asmbl_49110 scaffold_6 - intron_skips_exon 16887339-16888534 asmbl_49112 // Retained and Spliced Intron # retained_intron 17186531-17186619 (orient:-) max_ev_support = 2 # spliced_intron 17186531-17186619 (orient:-) max_ev_support = 3 scaffold_6 - intron 17186531-17186619 asmbl_49115,asmbl_49116 scaffold_6 - retained_intron 17186531-17186619 asmbl_49117 // Exon Skipping and Retention # skipped_exon 17645170-17647067 (orient:-) max_ev_support = 1 # retained_exon 17645345-17645565 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 17645345-17645565 asmbl_49129 scaffold_6 - intron_skips_exon 17645170-17647067 asmbl_49130 // Exon Skipping and Retention # skipped_exon 17645566-17647422 (orient:-) max_ev_support = 1 # retained_exon 17647068-17647288 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 17647068-17647288 asmbl_49130 scaffold_6 - intron_skips_exon 17645566-17647422 asmbl_49129 // Retained and Spliced Intron # retained_intron 17798851-17799282 (orient:-) max_ev_support = 1 # spliced_intron 17798851-17799282 (orient:-) max_ev_support = 2 scaffold_6 - intron 17798851-17799282 asmbl_49132 scaffold_6 - retained_intron 17798851-17799282 asmbl_49136 // Retained and Spliced Intron # retained_intron 17799090-17799282 (orient:-) max_ev_support = 1 # spliced_intron 17799090-17799282 (orient:-) max_ev_support = 2 scaffold_6 - intron 17799090-17799282 asmbl_49133 scaffold_6 - retained_intron 17799090-17799282 asmbl_49136 // Retained and Spliced Intron # retained_intron 17881666-17881817 (orient:-) max_ev_support = 2 # spliced_intron 17881666-17881817 (orient:-) max_ev_support = 3 scaffold_6 - intron 17881666-17881817 asmbl_49145,asmbl_49146,asmbl_49148,asmbl_49150,asmbl_49151 scaffold_6 - retained_intron 17881666-17881817 asmbl_49147 // Retained and Spliced Intron # retained_intron 17883201-17883316 (orient:-) max_ev_support = 2 # spliced_intron 17883201-17883316 (orient:-) max_ev_support = 3 scaffold_6 - intron 17883201-17883316 asmbl_49145,asmbl_49146,asmbl_49150,asmbl_49151 scaffold_6 - retained_intron 17883201-17883316 asmbl_49149 // Retained and Spliced Intron # retained_intron 18007958-18008258 (orient:-) max_ev_support = 3 # spliced_intron 18007958-18008258 (orient:-) max_ev_support = 2 scaffold_6 - intron 18007958-18008258 asmbl_49155,asmbl_49158 scaffold_6 - retained_intron 18007958-18008258 asmbl_49156 // Retained and Spliced Intron # retained_intron 18013760-18013851 (orient:-) max_ev_support = 1 # spliced_intron 18013760-18013851 (orient:-) max_ev_support = 2 scaffold_6 - intron 18013760-18013851 asmbl_49155,asmbl_49156 scaffold_6 - retained_intron 18013760-18013851 asmbl_49158 // Retained and Spliced Intron # retained_intron 18025101-18025221 (orient:-) max_ev_support = 1 # spliced_intron 18025101-18025221 (orient:-) max_ev_support = 2 scaffold_6 - intron 18025101-18025221 asmbl_49159 scaffold_6 - retained_intron 18025101-18025221 asmbl_49160 // Exon Skipping and Retention # skipped_exon 18047904-18050496 (orient:-) max_ev_support = 2 # retained_exon 18048348-18048443 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18048348-18048443 asmbl_49162 scaffold_6 - intron_skips_exon 18047904-18050496 asmbl_49161 // Exon Skipping and Retention # skipped_exon 18172535-18174830 (orient:-) max_ev_support = 2 # retained_exon 18174352-18174423 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18174352-18174423 asmbl_49165 scaffold_6 - intron_skips_exon 18172535-18174830 asmbl_49164 // Exon Skipping and Retention # skipped_exon 18209816-18210868 (orient:-) max_ev_support = 1 # retained_exon 18210213-18210333 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18210213-18210333 asmbl_49166 scaffold_6 - intron_skips_exon 18209816-18210868 asmbl_49167 // Exon Skipping and Retention # skipped_exon 18210334-18211757 (orient:-) max_ev_support = 1 # retained_exon 18210869-18210989 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18210869-18210989 asmbl_49167 scaffold_6 - intron_skips_exon 18210334-18211757 asmbl_49166 // Retained and Spliced Intron # retained_intron 18784543-18784568 (orient:-) max_ev_support = 4 # spliced_intron 18784543-18784568 (orient:-) max_ev_support = 1 scaffold_6 - intron 18784543-18784568 asmbl_49215 scaffold_6 - retained_intron 18784543-18784568 asmbl_49214 // Retained and Spliced Intron # retained_intron 18911268-18911384 (orient:-) max_ev_support = 2 # spliced_intron 18911268-18911384 (orient:-) max_ev_support = 1 scaffold_6 - intron 18911268-18911384 asmbl_49220 scaffold_6 - retained_intron 18911268-18911384 asmbl_49219,asmbl_49221 // Exon Skipping and Retention # skipped_exon 18916887-18917456 (orient:-) max_ev_support = 1 # retained_exon 18917077-18917158 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 18917077-18917158 asmbl_49222,asmbl_49223 scaffold_6 - intron_skips_exon 18916887-18917456 asmbl_49224 // Exon Skipping and Retention # skipped_exon 18916513-18917076 (orient:-) max_ev_support = 3 # retained_exon 18916805-18916886 (orient:-) max_ev_support = 1 scaffold_6 - retained_exons 18916805-18916886 asmbl_49224 scaffold_6 - intron_skips_exon 18916513-18917076 asmbl_49222,asmbl_49223 // Exon Skipping and Retention # skipped_exon 18922318-18922987 (orient:-) max_ev_support = 1 # retained_exon 18922548-18922655 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18922548-18922655 asmbl_49225 scaffold_6 - intron_skips_exon 18922318-18922987 asmbl_49227 // Exon Skipping and Retention # skipped_exon 18923791-18924975 (orient:-) max_ev_support = 1 # retained_exon 18923948-18924652 (orient:-) max_ev_support = 2 scaffold_6 - retained_exons 18923948-18924046,18924605-18924652 asmbl_49225 scaffold_6 - intron_skips_exon 18923791-18924975 asmbl_49227 // Exon Skipping and Retention # skipped_exon 19115049-19115680 (orient:-) max_ev_support = 2 # retained_exon 19115124-19115246 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19115124-19115246 asmbl_49233,asmbl_49234,asmbl_49237 scaffold_6 - intron_skips_exon 19115049-19115680 asmbl_49235,asmbl_49236 // Exon Skipping and Retention # skipped_exon 19115800-19116613 (orient:-) max_ev_support = 3 # retained_exon 19116136-19116266 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19116136-19116266 asmbl_49233 scaffold_6 - intron_skips_exon 19115800-19116613 asmbl_49234 // Exon Skipping and Retention # skipped_exon 19115800-19116587 (orient:-) max_ev_support = 1 # retained_exon 19116136-19116266 (orient:-) max_ev_support = 3 scaffold_6 - retained_exons 19116136-19116266 asmbl_49233 scaffold_6 - intron_skips_exon 19115800-19116587 asmbl_49236 // Retained and Spliced Intron # retained_intron 15832-15983 (orient:-) max_ev_support = 1 # spliced_intron 15832-15983 (orient:-) max_ev_support = 1 scaffold_60 - intron 15832-15983 asmbl_49397 scaffold_60 - retained_intron 15832-15983 asmbl_49398 // Exon Skipping and Retention # skipped_exon 1472-1924 (orient:-) max_ev_support = 1 # retained_exon 1629-1880 (orient:-) max_ev_support = 1 scaffold_643 - retained_exons 1629-1724,1802-1880 asmbl_49429 scaffold_643 - intron_skips_exon 1472-1924 asmbl_49428 // Retained and Spliced Intron # retained_intron 1289-1370 (orient:-) max_ev_support = 1 # spliced_intron 1289-1370 (orient:-) max_ev_support = 1 scaffold_643 - intron 1289-1370 asmbl_49428,asmbl_49429 scaffold_643 - retained_intron 1289-1370 asmbl_49430 // Retained and Spliced Intron # retained_intron 1606-1628 (orient:-) max_ev_support = 1 # spliced_intron 1606-1628 (orient:-) max_ev_support = 1 scaffold_643 - intron 1606-1628 asmbl_49429 scaffold_643 - retained_intron 1606-1628 asmbl_49430 // Retained and Spliced Intron # retained_intron 4845-4952 (orient:-) max_ev_support = 2 # spliced_intron 4845-4952 (orient:-) max_ev_support = 2 scaffold_646 - intron 4845-4952 asmbl_49432 scaffold_646 - retained_intron 4845-4952 asmbl_49431 // Retained and Spliced Intron # retained_intron 4980-5090 (orient:-) max_ev_support = 2 # spliced_intron 4980-5090 (orient:-) max_ev_support = 2 scaffold_646 - intron 4980-5090 asmbl_49432 scaffold_646 - retained_intron 4980-5090 asmbl_49431 // Retained and Spliced Intron # retained_intron 6653-6754 (orient:-) max_ev_support = 2 # spliced_intron 6653-6754 (orient:-) max_ev_support = 1 scaffold_67 - intron 6653-6754 asmbl_49450 scaffold_67 - retained_intron 6653-6754 asmbl_49449 // Retained and Spliced Intron # retained_intron 129101-129361 (orient:-) max_ev_support = 1 # spliced_intron 129101-129361 (orient:-) max_ev_support = 1 scaffold_7 - intron 129101-129361 asmbl_49478 scaffold_7 - retained_intron 129101-129361 asmbl_49477,asmbl_49479,asmbl_49482,asmbl_49486 // Retained and Spliced Intron # retained_intron 124900-125149 (orient:-) max_ev_support = 1 # spliced_intron 124900-125149 (orient:-) max_ev_support = 1 scaffold_7 - intron 124900-125149 asmbl_49477,asmbl_49478,asmbl_49479,asmbl_49482 scaffold_7 - retained_intron 124900-125149 asmbl_49480,asmbl_49486 // Retained and Spliced Intron # retained_intron 706941-707196 (orient:-) max_ev_support = 1 # spliced_intron 706941-707196 (orient:-) max_ev_support = 3 scaffold_7 - intron 706941-707196 asmbl_49500,asmbl_49501,asmbl_49502 scaffold_7 - retained_intron 706941-707196 asmbl_49503 // Retained and Spliced Intron # retained_intron 1386162-1387009 (orient:-) max_ev_support = 2 # spliced_intron 1386162-1387009 (orient:-) max_ev_support = 2 scaffold_7 - intron 1386162-1387009 asmbl_49531,asmbl_49536,asmbl_49537,asmbl_49538 scaffold_7 - retained_intron 1386162-1387009 asmbl_49532 // Retained and Spliced Intron # retained_intron 1387124-1387457 (orient:-) max_ev_support = 2 # spliced_intron 1387124-1387457 (orient:-) max_ev_support = 2 scaffold_7 - intron 1387124-1387457 asmbl_49531,asmbl_49536,asmbl_49537,asmbl_49538 scaffold_7 - retained_intron 1387124-1387457 asmbl_49532 // Exon Skipping and Retention # skipped_exon 1438761-1440604 (orient:-) max_ev_support = 1 # retained_exon 1439519-1440370 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 1439519-1439752,1439894-1440043,1440155-1440370 asmbl_49539 scaffold_7 - intron_skips_exon 1438761-1440604 asmbl_49540 // Exon Skipping and Retention # skipped_exon 1429518-1430722 (orient:-) max_ev_support = 2 # retained_exon 1430110-1430166 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 1430110-1430166 asmbl_49540 scaffold_7 - intron_skips_exon 1429518-1430722 asmbl_49539,asmbl_49541 // Retained and Spliced Intron # retained_intron 1440371-1440604 (orient:-) max_ev_support = 1 # spliced_intron 1440371-1440604 (orient:-) max_ev_support = 2 scaffold_7 - intron 1440371-1440604 asmbl_49539 scaffold_7 - retained_intron 1440371-1440604 asmbl_49541 // Retained and Spliced Intron # retained_intron 2502043-2502163 (orient:-) max_ev_support = 1 # spliced_intron 2502043-2502163 (orient:-) max_ev_support = 2 scaffold_7 - intron 2502043-2502163 asmbl_49566,asmbl_49567 scaffold_7 - retained_intron 2502043-2502163 asmbl_49570 // Retained and Spliced Intron # retained_intron 2509920-2510092 (orient:-) max_ev_support = 2 # spliced_intron 2509920-2510092 (orient:-) max_ev_support = 3 scaffold_7 - intron 2509920-2510092 asmbl_49572 scaffold_7 - retained_intron 2509920-2510092 asmbl_49573 // Retained and Spliced Intron # retained_intron 2523136-2523439 (orient:-) max_ev_support = 3 # spliced_intron 2523136-2523439 (orient:-) max_ev_support = 3 scaffold_7 - intron 2523136-2523439 asmbl_49575 scaffold_7 - retained_intron 2523136-2523439 asmbl_49574 // Retained and Spliced Intron # retained_intron 2852620-2854421 (orient:-) max_ev_support = 4 # spliced_intron 2852620-2854421 (orient:-) max_ev_support = 2 scaffold_7 - intron 2852620-2854421 asmbl_49586,asmbl_49587 scaffold_7 - retained_intron 2852620-2854421 asmbl_49585 // Exon Skipping and Retention # skipped_exon 3390194-3390921 (orient:-) max_ev_support = 1 # retained_exon 3390334-3390498 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 3390334-3390498 asmbl_49604 scaffold_7 - intron_skips_exon 3390194-3390921 asmbl_49603 // Retained and Spliced Intron # retained_intron 3955080-3955398 (orient:-) max_ev_support = 1 # spliced_intron 3955080-3955398 (orient:-) max_ev_support = 2 scaffold_7 - intron 3955080-3955398 asmbl_49643,asmbl_49644,asmbl_49648,asmbl_49649,asmbl_49650 scaffold_7 - retained_intron 3955080-3955398 asmbl_49645 // Retained and Spliced Intron # retained_intron 3955085-3955398 (orient:-) max_ev_support = 1 # spliced_intron 3955085-3955398 (orient:-) max_ev_support = 1 scaffold_7 - intron 3955085-3955398 asmbl_49646,asmbl_49647 scaffold_7 - retained_intron 3955085-3955398 asmbl_49645 // Retained and Spliced Intron # retained_intron 3954085-3954301 (orient:-) max_ev_support = 1 # spliced_intron 3954085-3954301 (orient:-) max_ev_support = 2 scaffold_7 - intron 3954085-3954301 asmbl_49643,asmbl_49644,asmbl_49645,asmbl_49646,asmbl_49647 scaffold_7 - retained_intron 3954085-3954301 asmbl_49648,asmbl_49649,asmbl_49650 // Retained and Spliced Intron # retained_intron 3953206-3953955 (orient:-) max_ev_support = 1 # spliced_intron 3953206-3953955 (orient:-) max_ev_support = 2 scaffold_7 - intron 3953206-3953955 asmbl_49643,asmbl_49644,asmbl_49645,asmbl_49646,asmbl_49647,asmbl_49648,asmbl_49649 scaffold_7 - retained_intron 3953206-3953955 asmbl_49650 // Retained and Spliced Intron # retained_intron 3957526-3957766 (orient:-) max_ev_support = 2 # spliced_intron 3957526-3957766 (orient:-) max_ev_support = 1 scaffold_7 - intron 3957526-3957766 asmbl_49654,asmbl_49655 scaffold_7 - retained_intron 3957526-3957766 asmbl_49652 // Retained and Spliced Intron # retained_intron 3957526-3957770 (orient:-) max_ev_support = 2 # spliced_intron 3957526-3957770 (orient:-) max_ev_support = 2 scaffold_7 - intron 3957526-3957770 asmbl_49651,asmbl_49653 scaffold_7 - retained_intron 3957526-3957770 asmbl_49652 // Retained and Spliced Intron # retained_intron 4046121-4046335 (orient:-) max_ev_support = 3 # spliced_intron 4046121-4046335 (orient:-) max_ev_support = 2 scaffold_7 - intron 4046121-4046335 asmbl_49661 scaffold_7 - retained_intron 4046121-4046335 asmbl_49660 // Exon Skipping and Retention # skipped_exon 4047076-4047398 (orient:-) max_ev_support = 1 # retained_exon 4047198-4047231 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4047198-4047231 asmbl_49661 scaffold_7 - intron_skips_exon 4047076-4047398 asmbl_49663 // Retained and Spliced Intron # retained_intron 4047076-4047197 (orient:-) max_ev_support = 1 # spliced_intron 4047076-4047197 (orient:-) max_ev_support = 2 scaffold_7 - intron 4047076-4047197 asmbl_49661 scaffold_7 - retained_intron 4047076-4047197 asmbl_49662 // Exon Skipping and Retention # skipped_exon 4071695-4072559 (orient:-) max_ev_support = 1 # retained_exon 4071926-4072018 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4071926-4072018 asmbl_49664 scaffold_7 - intron_skips_exon 4071695-4072559 asmbl_49667 // Exon Skipping and Retention # skipped_exon 4498642-4501601 (orient:-) max_ev_support = 2 # retained_exon 4501324-4501379 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4501324-4501379 asmbl_49678,asmbl_49679 scaffold_7 - intron_skips_exon 4498642-4501601 asmbl_49677 // Exon Skipping and Retention # skipped_exon 4498625-4501601 (orient:-) max_ev_support = 1 # retained_exon 4501324-4501379 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 4501324-4501379 asmbl_49678,asmbl_49679 scaffold_7 - intron_skips_exon 4498625-4501601 asmbl_49681 // Retained and Spliced Intron # retained_intron 5063228-5063324 (orient:-) max_ev_support = 2 # spliced_intron 5063228-5063324 (orient:-) max_ev_support = 1 scaffold_7 - intron 5063228-5063324 asmbl_49685 scaffold_7 - retained_intron 5063228-5063324 asmbl_49684 // Retained and Spliced Intron # retained_intron 5183050-5183286 (orient:-) max_ev_support = 2 # spliced_intron 5183050-5183286 (orient:-) max_ev_support = 2 scaffold_7 - intron 5183050-5183286 asmbl_49689 scaffold_7 - retained_intron 5183050-5183286 asmbl_49688 // Exon Skipping and Retention # skipped_exon 5183050-5183703 (orient:-) max_ev_support = 1 # retained_exon 5183287-5183353 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 5183287-5183353 asmbl_49689 scaffold_7 - intron_skips_exon 5183050-5183703 asmbl_49690 // Retained and Spliced Intron # retained_intron 5265960-5265992 (orient:-) max_ev_support = 2 # spliced_intron 5265960-5265992 (orient:-) max_ev_support = 1 scaffold_7 - intron 5265960-5265992 asmbl_49692 scaffold_7 - retained_intron 5265960-5265992 asmbl_49691 // Exon Skipping and Retention # skipped_exon 5423446-5425938 (orient:-) max_ev_support = 1 # retained_exon 5424137-5424184 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 5424137-5424184 asmbl_49700 scaffold_7 - intron_skips_exon 5423446-5425938 asmbl_49701 // Retained and Spliced Intron # retained_intron 5910425-5910739 (orient:-) max_ev_support = 2 # spliced_intron 5910425-5910739 (orient:-) max_ev_support = 1 scaffold_7 - intron 5910425-5910739 asmbl_49710 scaffold_7 - retained_intron 5910425-5910739 asmbl_49709 // Retained and Spliced Intron # retained_intron 5916677-5917155 (orient:-) max_ev_support = 4 # spliced_intron 5916677-5917155 (orient:-) max_ev_support = 2 scaffold_7 - intron 5916677-5917155 asmbl_49712,asmbl_49715 scaffold_7 - retained_intron 5916677-5917155 asmbl_49711 // Retained and Spliced Intron # retained_intron 5916762-5917155 (orient:-) max_ev_support = 3 # spliced_intron 5916762-5917155 (orient:-) max_ev_support = 1 scaffold_7 - intron 5916762-5917155 asmbl_49713,asmbl_49717 scaffold_7 - retained_intron 5916762-5917155 asmbl_49711 // Retained and Spliced Intron # retained_intron 5915073-5915159 (orient:-) max_ev_support = 3 # spliced_intron 5915073-5915159 (orient:-) max_ev_support = 2 scaffold_7 - intron 5915073-5915159 asmbl_49711,asmbl_49713,asmbl_49714,asmbl_49715,asmbl_49717,asmbl_49718 scaffold_7 - retained_intron 5915073-5915159 asmbl_49712 // Exon Skipping and Retention # skipped_exon 5916256-5917155 (orient:-) max_ev_support = 2 # retained_exon 5916586-5916676 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 5916586-5916676 asmbl_49712,asmbl_49715 scaffold_7 - intron_skips_exon 5916256-5917155 asmbl_49714 // Exon Skipping and Retention # skipped_exon 5916256-5917054 (orient:-) max_ev_support = 1 # retained_exon 5916586-5916676 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 5916586-5916676 asmbl_49712,asmbl_49715 scaffold_7 - intron_skips_exon 5916256-5917054 asmbl_49718 // Retained and Spliced Intron # retained_intron 5916256-5916585 (orient:-) max_ev_support = 2 # spliced_intron 5916256-5916585 (orient:-) max_ev_support = 4 scaffold_7 - intron 5916256-5916585 asmbl_49711,asmbl_49712,asmbl_49713,asmbl_49715,asmbl_49717 scaffold_7 - retained_intron 5916256-5916585 asmbl_49716 // Retained and Spliced Intron # retained_intron 5915696-5915876 (orient:-) max_ev_support = 1 # spliced_intron 5915696-5915876 (orient:-) max_ev_support = 2 scaffold_7 - intron 5915696-5915876 asmbl_49711,asmbl_49712,asmbl_49713,asmbl_49714,asmbl_49715,asmbl_49718 scaffold_7 - retained_intron 5915696-5915876 asmbl_49717 // Retained and Spliced Intron # retained_intron 6042028-6042598 (orient:-) max_ev_support = 2 # spliced_intron 6042028-6042598 (orient:-) max_ev_support = 1 scaffold_7 - intron 6042028-6042598 asmbl_49725 scaffold_7 - retained_intron 6042028-6042598 asmbl_49722,asmbl_49723,asmbl_49724,asmbl_49726 // Retained and Spliced Intron # retained_intron 6042675-6042946 (orient:-) max_ev_support = 2 # spliced_intron 6042675-6042946 (orient:-) max_ev_support = 1 scaffold_7 - intron 6042675-6042946 asmbl_49723 scaffold_7 - retained_intron 6042675-6042946 asmbl_49722 // Retained and Spliced Intron # retained_intron 6042675-6043339 (orient:-) max_ev_support = 4 # spliced_intron 6042675-6043339 (orient:-) max_ev_support = 1 scaffold_7 - intron 6042675-6043339 asmbl_49726 scaffold_7 - retained_intron 6042675-6043339 asmbl_49722 // Retained and Spliced Intron # retained_intron 6042675-6043363 (orient:-) max_ev_support = 4 # spliced_intron 6042675-6043363 (orient:-) max_ev_support = 1 scaffold_7 - intron 6042675-6043363 asmbl_49724,asmbl_49725 scaffold_7 - retained_intron 6042675-6043363 asmbl_49722 // Retained and Spliced Intron # retained_intron 6580953-6581051 (orient:-) max_ev_support = 2 # spliced_intron 6580953-6581051 (orient:-) max_ev_support = 1 scaffold_7 - intron 6580953-6581051 asmbl_49735 scaffold_7 - retained_intron 6580953-6581051 asmbl_49734 // Retained and Spliced Intron # retained_intron 6654846-6655304 (orient:-) max_ev_support = 3 # spliced_intron 6654846-6655304 (orient:-) max_ev_support = 2 scaffold_7 - intron 6654846-6655304 asmbl_49744 scaffold_7 - retained_intron 6654846-6655304 asmbl_49743 // Retained and Spliced Intron # retained_intron 6655482-6656656 (orient:-) max_ev_support = 3 # spliced_intron 6655482-6656656 (orient:-) max_ev_support = 2 scaffold_7 - intron 6655482-6656656 asmbl_49744,asmbl_49745 scaffold_7 - retained_intron 6655482-6656656 asmbl_49743 // Retained and Spliced Intron # retained_intron 7493241-7494424 (orient:-) max_ev_support = 2 # spliced_intron 7493241-7494424 (orient:-) max_ev_support = 1 scaffold_7 - intron 7493241-7494424 asmbl_49756 scaffold_7 - retained_intron 7493241-7494424 asmbl_49755 // Retained and Spliced Intron # retained_intron 7534643-7534673 (orient:-) max_ev_support = 1 # spliced_intron 7534643-7534673 (orient:-) max_ev_support = 1 scaffold_7 - intron 7534643-7534673 asmbl_49763 scaffold_7 - retained_intron 7534643-7534673 asmbl_49762 // Retained and Spliced Intron # retained_intron 7789092-7789283 (orient:-) max_ev_support = 4 # spliced_intron 7789092-7789283 (orient:-) max_ev_support = 3 scaffold_7 - intron 7789092-7789283 asmbl_49790,asmbl_49791 scaffold_7 - retained_intron 7789092-7789283 asmbl_49788,asmbl_49789 // Retained and Spliced Intron # retained_intron 7927994-7928676 (orient:-) max_ev_support = 1 # spliced_intron 7927994-7928676 (orient:-) max_ev_support = 2 scaffold_7 - intron 7927994-7928676 asmbl_49792,asmbl_49793 scaffold_7 - retained_intron 7927994-7928676 asmbl_49794 // Retained and Spliced Intron # retained_intron 8295633-8296154 (orient:-) max_ev_support = 4 # spliced_intron 8295633-8296154 (orient:-) max_ev_support = 2 scaffold_7 - intron 8295633-8296154 asmbl_49807,asmbl_49808,asmbl_49809 scaffold_7 - retained_intron 8295633-8296154 asmbl_49806 // Retained and Spliced Intron # retained_intron 8296258-8296345 (orient:-) max_ev_support = 3 # spliced_intron 8296258-8296345 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296258-8296345 asmbl_49807,asmbl_49809 scaffold_7 - retained_intron 8296258-8296345 asmbl_49806 // Retained and Spliced Intron # retained_intron 8296258-8297094 (orient:-) max_ev_support = 3 # spliced_intron 8296258-8297094 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296258-8297094 asmbl_49808 scaffold_7 - retained_intron 8296258-8297094 asmbl_49806 // Retained and Spliced Intron # retained_intron 8296441-8297094 (orient:-) max_ev_support = 3 # spliced_intron 8296441-8297094 (orient:-) max_ev_support = 2 scaffold_7 - intron 8296441-8297094 asmbl_49807 scaffold_7 - retained_intron 8296441-8297094 asmbl_49806,asmbl_49809 // Exon Skipping and Retention # skipped_exon 8296258-8297094 (orient:-) max_ev_support = 2 # retained_exon 8296346-8296440 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 8296346-8296440 asmbl_49807 scaffold_7 - intron_skips_exon 8296258-8297094 asmbl_49808 // Retained and Spliced Intron # retained_intron 8326608-8326876 (orient:-) max_ev_support = 2 # spliced_intron 8326608-8326876 (orient:-) max_ev_support = 2 scaffold_7 - intron 8326608-8326876 asmbl_49819 scaffold_7 - retained_intron 8326608-8326876 asmbl_49820 // Retained and Spliced Intron # retained_intron 8326694-8326876 (orient:-) max_ev_support = 2 # spliced_intron 8326694-8326876 (orient:-) max_ev_support = 1 scaffold_7 - intron 8326694-8326876 asmbl_49821 scaffold_7 - retained_intron 8326694-8326876 asmbl_49820 // Retained and Spliced Intron # retained_intron 8659757-8660031 (orient:-) max_ev_support = 1 # spliced_intron 8659757-8660031 (orient:-) max_ev_support = 1 scaffold_7 - intron 8659757-8660031 asmbl_49835 scaffold_7 - retained_intron 8659757-8660031 asmbl_49838 // Retained and Spliced Intron # retained_intron 8659761-8660031 (orient:-) max_ev_support = 1 # spliced_intron 8659761-8660031 (orient:-) max_ev_support = 2 scaffold_7 - intron 8659761-8660031 asmbl_49836,asmbl_49837 scaffold_7 - retained_intron 8659761-8660031 asmbl_49838 // Retained and Spliced Intron # retained_intron 9708727-9708817 (orient:-) max_ev_support = 1 # spliced_intron 9708727-9708817 (orient:-) max_ev_support = 2 scaffold_7 - intron 9708727-9708817 asmbl_49867 scaffold_7 - retained_intron 9708727-9708817 asmbl_49868 // Exon Skipping and Retention # skipped_exon 9767491-9767994 (orient:-) max_ev_support = 1 # retained_exon 9767588-9767656 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 9767588-9767656 asmbl_49873 scaffold_7 - intron_skips_exon 9767491-9767994 asmbl_49874 // Retained and Spliced Intron # retained_intron 9782875-9783156 (orient:-) max_ev_support = 2 # spliced_intron 9782875-9783156 (orient:-) max_ev_support = 2 scaffold_7 - intron 9782875-9783156 asmbl_49876 scaffold_7 - retained_intron 9782875-9783156 asmbl_49877,asmbl_49878,asmbl_49879 // Retained and Spliced Intron # retained_intron 9810110-9810191 (orient:-) max_ev_support = 1 # spliced_intron 9810110-9810191 (orient:-) max_ev_support = 1 scaffold_7 - intron 9810110-9810191 asmbl_49886 scaffold_7 - retained_intron 9810110-9810191 asmbl_49883 // Retained and Spliced Intron # retained_intron 9833548-9833658 (orient:-) max_ev_support = 3 # spliced_intron 9833548-9833658 (orient:-) max_ev_support = 1 scaffold_7 - intron 9833548-9833658 asmbl_49892,asmbl_49893 scaffold_7 - retained_intron 9833548-9833658 asmbl_49890,asmbl_49891 // Exon Skipping and Retention # skipped_exon 9836258-9836660 (orient:-) max_ev_support = 2 # retained_exon 9836509-9836572 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 9836509-9836572 asmbl_49891,asmbl_49893 scaffold_7 - intron_skips_exon 9836258-9836660 asmbl_49890,asmbl_49892 // Exon Skipping and Retention # skipped_exon 9864000-9864641 (orient:-) max_ev_support = 1 # retained_exon 9864296-9864325 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 9864296-9864325 asmbl_49902,asmbl_49905 scaffold_7 - intron_skips_exon 9864000-9864641 asmbl_49906 // Retained and Spliced Intron # retained_intron 9921560-9921694 (orient:-) max_ev_support = 1 # spliced_intron 9921560-9921694 (orient:-) max_ev_support = 2 scaffold_7 - intron 9921560-9921694 asmbl_49913,asmbl_49914 scaffold_7 - retained_intron 9921560-9921694 asmbl_49915 // Retained and Spliced Intron # retained_intron 10536228-10536307 (orient:-) max_ev_support = 2 # spliced_intron 10536228-10536307 (orient:-) max_ev_support = 1 scaffold_7 - intron 10536228-10536307 asmbl_49940 scaffold_7 - retained_intron 10536228-10536307 asmbl_49939 // Retained and Spliced Intron # retained_intron 10910943-10910963 (orient:-) max_ev_support = 2 # spliced_intron 10910943-10910963 (orient:-) max_ev_support = 1 scaffold_7 - intron 10910943-10910963 asmbl_49954 scaffold_7 - retained_intron 10910943-10910963 asmbl_49955 // Retained and Spliced Intron # retained_intron 11121409-11121518 (orient:-) max_ev_support = 2 # spliced_intron 11121409-11121518 (orient:-) max_ev_support = 2 scaffold_7 - intron 11121409-11121518 asmbl_49960 scaffold_7 - retained_intron 11121409-11121518 asmbl_49961 // Retained and Spliced Intron # retained_intron 11987431-11987607 (orient:-) max_ev_support = 2 # spliced_intron 11987431-11987607 (orient:-) max_ev_support = 2 scaffold_7 - intron 11987431-11987607 asmbl_49992 scaffold_7 - retained_intron 11987431-11987607 asmbl_49991 // Retained and Spliced Intron # retained_intron 12364305-12364430 (orient:-) max_ev_support = 1 # spliced_intron 12364305-12364430 (orient:-) max_ev_support = 1 scaffold_7 - intron 12364305-12364430 asmbl_50010 scaffold_7 - retained_intron 12364305-12364430 asmbl_50012 // Exon Skipping and Retention # skipped_exon 12388891-12390644 (orient:-) max_ev_support = 1 # retained_exon 12390032-12390109 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 12390032-12390109 asmbl_50013,asmbl_50015,asmbl_50017,asmbl_50019,asmbl_50020,asmbl_50021 scaffold_7 - intron_skips_exon 12388891-12390644 asmbl_50018 // Retained and Spliced Intron # retained_intron 12387637-12387722 (orient:-) max_ev_support = 1 # spliced_intron 12387637-12387722 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387637-12387722 asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50018,asmbl_50019,asmbl_50020 scaffold_7 - retained_intron 12387637-12387722 asmbl_50017,asmbl_50021 // Retained and Spliced Intron # retained_intron 12387853-12388105 (orient:-) max_ev_support = 1 # spliced_intron 12387853-12388105 (orient:-) max_ev_support = 1 scaffold_7 - intron 12387853-12388105 asmbl_50020 scaffold_7 - retained_intron 12387853-12388105 asmbl_50017,asmbl_50021 // Retained and Spliced Intron # retained_intron 12387853-12388141 (orient:-) max_ev_support = 1 # spliced_intron 12387853-12388141 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387853-12388141 asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50018,asmbl_50019 scaffold_7 - retained_intron 12387853-12388141 asmbl_50017,asmbl_50021 // Retained and Spliced Intron # retained_intron 12386811-12386895 (orient:-) max_ev_support = 1 # spliced_intron 12386811-12386895 (orient:-) max_ev_support = 1 scaffold_7 - intron 12386811-12386895 asmbl_50015 scaffold_7 - retained_intron 12386811-12386895 asmbl_50019 // Retained and Spliced Intron # retained_intron 12386811-12386906 (orient:-) max_ev_support = 1 # spliced_intron 12386811-12386906 (orient:-) max_ev_support = 2 scaffold_7 - intron 12386811-12386906 asmbl_50013,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50020 scaffold_7 - retained_intron 12386811-12386906 asmbl_50019 // Retained and Spliced Intron # retained_intron 12387041-12387135 (orient:-) max_ev_support = 1 # spliced_intron 12387041-12387135 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387041-12387135 asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020 scaffold_7 - retained_intron 12387041-12387135 asmbl_50021 // Retained and Spliced Intron # retained_intron 12387302-12387428 (orient:-) max_ev_support = 1 # spliced_intron 12387302-12387428 (orient:-) max_ev_support = 2 scaffold_7 - intron 12387302-12387428 asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020 scaffold_7 - retained_intron 12387302-12387428 asmbl_50021 // Retained and Spliced Intron # retained_intron 12388225-12388322 (orient:-) max_ev_support = 1 # spliced_intron 12388225-12388322 (orient:-) max_ev_support = 2 scaffold_7 - intron 12388225-12388322 asmbl_50013,asmbl_50015,asmbl_50016,asmbl_50017,asmbl_50018,asmbl_50019,asmbl_50020 scaffold_7 - retained_intron 12388225-12388322 asmbl_50021 // Retained and Spliced Intron # retained_intron 12414914-12415002 (orient:-) max_ev_support = 1 # spliced_intron 12414914-12415002 (orient:-) max_ev_support = 2 scaffold_7 - intron 12414914-12415002 asmbl_50025,asmbl_50027,asmbl_50028 scaffold_7 - retained_intron 12414914-12415002 asmbl_50026 // Retained and Spliced Intron # retained_intron 12415910-12416003 (orient:-) max_ev_support = 1 # spliced_intron 12415910-12416003 (orient:-) max_ev_support = 2 scaffold_7 - intron 12415910-12416003 asmbl_50025,asmbl_50026,asmbl_50028 scaffold_7 - retained_intron 12415910-12416003 asmbl_50027 // Retained and Spliced Intron # retained_intron 12428916-12429023 (orient:-) max_ev_support = 2 # spliced_intron 12428916-12429023 (orient:-) max_ev_support = 3 scaffold_7 - intron 12428916-12429023 asmbl_50032 scaffold_7 - retained_intron 12428916-12429023 asmbl_50033 // Exon Skipping and Retention # skipped_exon 12447826-12449542 (orient:-) max_ev_support = 1 # retained_exon 12448129-12449110 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 12448129-12448230,12449018-12449110 asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044 scaffold_7 - intron_skips_exon 12447826-12449542 asmbl_50040,asmbl_50043,asmbl_50047 // Exon Skipping and Retention # skipped_exon 12451982-12453235 (orient:-) max_ev_support = 1 # retained_exon 12452393-12452784 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 12452393-12452506,12452713-12452784 asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50041,asmbl_50045 scaffold_7 - intron_skips_exon 12451982-12453235 asmbl_50043 // Retained and Spliced Intron # retained_intron 12455195-12455507 (orient:-) max_ev_support = 2 # spliced_intron 12455195-12455507 (orient:-) max_ev_support = 2 scaffold_7 - intron 12455195-12455507 asmbl_50036,asmbl_50042,asmbl_50043,asmbl_50046 scaffold_7 - retained_intron 12455195-12455507 asmbl_50037,asmbl_50038,asmbl_50039,asmbl_50040,asmbl_50041,asmbl_50045 // Retained and Spliced Intron # retained_intron 12448231-12449017 (orient:-) max_ev_support = 1 # spliced_intron 12448231-12449017 (orient:-) max_ev_support = 3 scaffold_7 - intron 12448231-12449017 asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044 scaffold_7 - retained_intron 12448231-12449017 asmbl_50038,asmbl_50041 // Retained and Spliced Intron # retained_intron 12449111-12449542 (orient:-) max_ev_support = 1 # spliced_intron 12449111-12449542 (orient:-) max_ev_support = 3 scaffold_7 - intron 12449111-12449542 asmbl_50036,asmbl_50037,asmbl_50039,asmbl_50042,asmbl_50044 scaffold_7 - retained_intron 12449111-12449542 asmbl_50038,asmbl_50041 // Retained and Spliced Intron # retained_intron 12452507-12452712 (orient:-) max_ev_support = 1 # spliced_intron 12452507-12452712 (orient:-) max_ev_support = 3 scaffold_7 - intron 12452507-12452712 asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50040,asmbl_50041,asmbl_50042,asmbl_50045 scaffold_7 - retained_intron 12452507-12452712 asmbl_50039 // Retained and Spliced Intron # retained_intron 12452785-12453235 (orient:-) max_ev_support = 2 # spliced_intron 12452785-12453235 (orient:-) max_ev_support = 3 scaffold_7 - intron 12452785-12453235 asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50041,asmbl_50045 scaffold_7 - retained_intron 12452785-12453235 asmbl_50039,asmbl_50040,asmbl_50042 // Retained and Spliced Intron # retained_intron 12447826-12448128 (orient:-) max_ev_support = 1 # spliced_intron 12447826-12448128 (orient:-) max_ev_support = 3 scaffold_7 - intron 12447826-12448128 asmbl_50036,asmbl_50037,asmbl_50038,asmbl_50039,asmbl_50042,asmbl_50044 scaffold_7 - retained_intron 12447826-12448128 asmbl_50041 // Retained and Spliced Intron # retained_intron 12447826-12449542 (orient:-) max_ev_support = 1 # spliced_intron 12447826-12449542 (orient:-) max_ev_support = 1 scaffold_7 - intron 12447826-12449542 asmbl_50040,asmbl_50043,asmbl_50047 scaffold_7 - retained_intron 12447826-12449542 asmbl_50041 // Retained and Spliced Intron # retained_intron 12451061-12451154 (orient:-) max_ev_support = 2 # spliced_intron 12451061-12451154 (orient:-) max_ev_support = 2 scaffold_7 - intron 12451061-12451154 asmbl_50044 scaffold_7 - retained_intron 12451061-12451154 asmbl_50050 // Retained and Spliced Intron # retained_intron 12451061-12451190 (orient:-) max_ev_support = 2 # spliced_intron 12451061-12451190 (orient:-) max_ev_support = 1 scaffold_7 - intron 12451061-12451190 asmbl_50047 scaffold_7 - retained_intron 12451061-12451190 asmbl_50050 // Retained and Spliced Intron # retained_intron 12540189-12540286 (orient:-) max_ev_support = 1 # spliced_intron 12540189-12540286 (orient:-) max_ev_support = 2 scaffold_7 - intron 12540189-12540286 asmbl_50055,asmbl_50056,asmbl_50059,asmbl_50060,asmbl_50061 scaffold_7 - retained_intron 12540189-12540286 asmbl_50058 // Retained and Spliced Intron # retained_intron 12649977-12650578 (orient:-) max_ev_support = 2 # spliced_intron 12649977-12650578 (orient:-) max_ev_support = 2 scaffold_7 - intron 12649977-12650578 asmbl_50075 scaffold_7 - retained_intron 12649977-12650578 asmbl_50076 // Retained and Spliced Intron # retained_intron 12649977-12650680 (orient:-) max_ev_support = 2 # spliced_intron 12649977-12650680 (orient:-) max_ev_support = 1 scaffold_7 - intron 12649977-12650680 asmbl_50077 scaffold_7 - retained_intron 12649977-12650680 asmbl_50076 // Retained and Spliced Intron # retained_intron 13014655-13014839 (orient:-) max_ev_support = 1 # spliced_intron 13014655-13014839 (orient:-) max_ev_support = 1 scaffold_7 - intron 13014655-13014839 asmbl_50093,asmbl_50098,asmbl_50099 scaffold_7 - retained_intron 13014655-13014839 asmbl_50094 // Retained and Spliced Intron # retained_intron 13015452-13015641 (orient:-) max_ev_support = 1 # spliced_intron 13015452-13015641 (orient:-) max_ev_support = 1 scaffold_7 - intron 13015452-13015641 asmbl_50093,asmbl_50098 scaffold_7 - retained_intron 13015452-13015641 asmbl_50094,asmbl_50099 // Retained and Spliced Intron # retained_intron 13019692-13019783 (orient:-) max_ev_support = 1 # spliced_intron 13019692-13019783 (orient:-) max_ev_support = 1 scaffold_7 - intron 13019692-13019783 asmbl_50093 scaffold_7 - retained_intron 13019692-13019783 asmbl_50100 // Retained and Spliced Intron # retained_intron 13173894-13174034 (orient:-) max_ev_support = 2 # spliced_intron 13173894-13174034 (orient:-) max_ev_support = 2 scaffold_7 - intron 13173894-13174034 asmbl_50108,asmbl_50109 scaffold_7 - retained_intron 13173894-13174034 asmbl_50107 // Retained and Spliced Intron # retained_intron 13196688-13197490 (orient:-) max_ev_support = 3 # spliced_intron 13196688-13197490 (orient:-) max_ev_support = 1 scaffold_7 - intron 13196688-13197490 asmbl_50116 scaffold_7 - retained_intron 13196688-13197490 asmbl_50111,asmbl_50112,asmbl_50113 // Retained and Spliced Intron # retained_intron 13196688-13197769 (orient:-) max_ev_support = 3 # spliced_intron 13196688-13197769 (orient:-) max_ev_support = 2 scaffold_7 - intron 13196688-13197769 asmbl_50114,asmbl_50115,asmbl_50117 scaffold_7 - retained_intron 13196688-13197769 asmbl_50111,asmbl_50112,asmbl_50113 // Retained and Spliced Intron # retained_intron 13198531-13198748 (orient:-) max_ev_support = 1 # spliced_intron 13198531-13198748 (orient:-) max_ev_support = 2 scaffold_7 - intron 13198531-13198748 asmbl_50111,asmbl_50112,asmbl_50114,asmbl_50115 scaffold_7 - retained_intron 13198531-13198748 asmbl_50113,asmbl_50116,asmbl_50117 // Retained and Spliced Intron # retained_intron 13552407-13554063 (orient:-) max_ev_support = 1 # spliced_intron 13552407-13554063 (orient:-) max_ev_support = 2 scaffold_7 - intron 13552407-13554063 asmbl_50128 scaffold_7 - retained_intron 13552407-13554063 asmbl_50130 // Retained and Spliced Intron # retained_intron 13554150-13554287 (orient:-) max_ev_support = 1 # spliced_intron 13554150-13554287 (orient:-) max_ev_support = 2 scaffold_7 - intron 13554150-13554287 asmbl_50128 scaffold_7 - retained_intron 13554150-13554287 asmbl_50130 // Retained and Spliced Intron # retained_intron 13863191-13863810 (orient:-) max_ev_support = 1 # spliced_intron 13863191-13863810 (orient:-) max_ev_support = 2 scaffold_7 - intron 13863191-13863810 asmbl_50135,asmbl_50137,asmbl_50139,asmbl_50140 scaffold_7 - retained_intron 13863191-13863810 asmbl_50136,asmbl_50141,asmbl_50142 // Retained and Spliced Intron # retained_intron 13866490-13867075 (orient:-) max_ev_support = 2 # spliced_intron 13866490-13867075 (orient:-) max_ev_support = 1 scaffold_7 - intron 13866490-13867075 asmbl_50140 scaffold_7 - retained_intron 13866490-13867075 asmbl_50137 // Retained and Spliced Intron # retained_intron 13866546-13867075 (orient:-) max_ev_support = 2 # spliced_intron 13866546-13867075 (orient:-) max_ev_support = 1 scaffold_7 - intron 13866546-13867075 asmbl_50139 scaffold_7 - retained_intron 13866546-13867075 asmbl_50137 // Retained and Spliced Intron # retained_intron 15020785-15020865 (orient:-) max_ev_support = 1 # spliced_intron 15020785-15020865 (orient:-) max_ev_support = 2 scaffold_7 - intron 15020785-15020865 asmbl_50168 scaffold_7 - retained_intron 15020785-15020865 asmbl_50169 // Exon Skipping and Retention # skipped_exon 15032178-15034345 (orient:-) max_ev_support = 1 # retained_exon 15033538-15033597 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15033538-15033597 asmbl_50173 scaffold_7 - intron_skips_exon 15032178-15034345 asmbl_50172 // Exon Skipping and Retention # skipped_exon 15316590-15317879 (orient:-) max_ev_support = 1 # retained_exon 15316971-15317130 (orient:-) max_ev_support = 4 scaffold_7 - retained_exons 15316971-15317130 asmbl_50186 scaffold_7 - intron_skips_exon 15316590-15317879 asmbl_50188 // Exon Skipping and Retention # skipped_exon 15566218-15569133 (orient:-) max_ev_support = 1 # retained_exon 15568001-15568071 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15568001-15568071 asmbl_50201,asmbl_50202 scaffold_7 - intron_skips_exon 15566218-15569133 asmbl_50203 // Exon Skipping and Retention # skipped_exon 15568072-15569453 (orient:-) max_ev_support = 1 # retained_exon 15569134-15569204 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 15569134-15569204 asmbl_50203 scaffold_7 - intron_skips_exon 15568072-15569453 asmbl_50201,asmbl_50202 // Retained and Spliced Intron # retained_intron 16823575-16823876 (orient:-) max_ev_support = 2 # spliced_intron 16823575-16823876 (orient:-) max_ev_support = 1 scaffold_7 - intron 16823575-16823876 asmbl_50234,asmbl_50236 scaffold_7 - retained_intron 16823575-16823876 asmbl_50231,asmbl_50235 // Retained and Spliced Intron # retained_intron 16829502-16829802 (orient:-) max_ev_support = 2 # spliced_intron 16829502-16829802 (orient:-) max_ev_support = 3 scaffold_7 - intron 16829502-16829802 asmbl_50239 scaffold_7 - retained_intron 16829502-16829802 asmbl_50240 // Retained and Spliced Intron # retained_intron 16829914-16830413 (orient:-) max_ev_support = 2 # spliced_intron 16829914-16830413 (orient:-) max_ev_support = 3 scaffold_7 - intron 16829914-16830413 asmbl_50239 scaffold_7 - retained_intron 16829914-16830413 asmbl_50240 // Exon Skipping and Retention # skipped_exon 18392948-18394633 (orient:-) max_ev_support = 2 # retained_exon 18393031-18393088 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18393031-18393088 asmbl_50288,asmbl_50294,asmbl_50295,asmbl_50298 scaffold_7 - intron_skips_exon 18392948-18394633 asmbl_50292,asmbl_50299 // Exon Skipping and Retention # skipped_exon 18392945-18394646 (orient:-) max_ev_support = 1 # retained_exon 18393031-18393088 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18393031-18393088 asmbl_50288,asmbl_50294,asmbl_50295,asmbl_50298 scaffold_7 - intron_skips_exon 18392945-18394646 asmbl_50297 // Exon Skipping and Retention # skipped_exon 18393089-18394633 (orient:-) max_ev_support = 3 # retained_exon 18394449-18394507 (orient:-) max_ev_support = 2 scaffold_7 - retained_exons 18394449-18394507 asmbl_50289,asmbl_50296 scaffold_7 - intron_skips_exon 18393089-18394633 asmbl_50288,asmbl_50294,asmbl_50295,asmbl_50298 // Retained and Spliced Intron # retained_intron 18392890-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392890-18393030 (orient:-) max_ev_support = 2 scaffold_7 - intron 18392890-18393030 asmbl_50289,asmbl_50293,asmbl_50294,asmbl_50295 scaffold_7 - retained_intron 18392890-18393030 asmbl_50291 // Retained and Spliced Intron # retained_intron 18392945-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392945-18393030 (orient:-) max_ev_support = 3 scaffold_7 - intron 18392945-18393030 asmbl_50288,asmbl_50296 scaffold_7 - retained_intron 18392945-18393030 asmbl_50291 // Retained and Spliced Intron # retained_intron 18392948-18393030 (orient:-) max_ev_support = 2 # spliced_intron 18392948-18393030 (orient:-) max_ev_support = 2 scaffold_7 - intron 18392948-18393030 asmbl_50290,asmbl_50298 scaffold_7 - retained_intron 18392948-18393030 asmbl_50291 // Retained and Spliced Intron # retained_intron 18615578-18615841 (orient:-) max_ev_support = 2 # spliced_intron 18615578-18615841 (orient:-) max_ev_support = 1 scaffold_7 - intron 18615578-18615841 asmbl_50304,asmbl_50306 scaffold_7 - retained_intron 18615578-18615841 asmbl_50302 // Retained and Spliced Intron # retained_intron 18615646-18615841 (orient:-) max_ev_support = 2 # spliced_intron 18615646-18615841 (orient:-) max_ev_support = 1 scaffold_7 - intron 18615646-18615841 asmbl_50305 scaffold_7 - retained_intron 18615646-18615841 asmbl_50302 // Retained and Spliced Intron # retained_intron 18619948-18620034 (orient:-) max_ev_support = 2 # spliced_intron 18619948-18620034 (orient:-) max_ev_support = 2 scaffold_7 - intron 18619948-18620034 asmbl_50302,asmbl_50304,asmbl_50305,asmbl_50306 scaffold_7 - retained_intron 18619948-18620034 asmbl_50303 // Exon Skipping and Retention # skipped_exon 18685064-18686631 (orient:-) max_ev_support = 1 # retained_exon 18685553-18685708 (orient:-) max_ev_support = 3 scaffold_7 - retained_exons 18685553-18685708 asmbl_50310 scaffold_7 - intron_skips_exon 18685064-18686631 asmbl_50311 // Exon Skipping and Retention # skipped_exon 18771443-18771809 (orient:-) max_ev_support = 1 # retained_exon 18771697-18771705 (orient:-) max_ev_support = 1 scaffold_7 - retained_exons 18771697-18771705 asmbl_50322 scaffold_7 - intron_skips_exon 18771443-18771809 asmbl_50320 // Retained and Spliced Intron # retained_intron 18945539-18945573 (orient:-) max_ev_support = 1 # spliced_intron 18945539-18945573 (orient:-) max_ev_support = 1 scaffold_7 - intron 18945539-18945573 asmbl_50326 scaffold_7 - retained_intron 18945539-18945573 asmbl_50325 // Retained and Spliced Intron # retained_intron 271564-271669 (orient:+) max_ev_support = 1 # spliced_intron 271564-271669 (orient:+) max_ev_support = 1 scaffold_7 + intron 271564-271669 asmbl_50425 scaffold_7 + retained_intron 271564-271669 asmbl_50424 // Retained and Spliced Intron # retained_intron 289521-289547 (orient:+) max_ev_support = 1 # spliced_intron 289521-289547 (orient:+) max_ev_support = 1 scaffold_7 + intron 289521-289547 asmbl_50430,asmbl_50431 scaffold_7 + retained_intron 289521-289547 asmbl_50429,asmbl_50432 // Exon Skipping and Retention # skipped_exon 689261-689739 (orient:+) max_ev_support = 1 # retained_exon 689481-689645 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 689481-689645 asmbl_50437 scaffold_7 + intron_skips_exon 689261-689739 asmbl_50438 // Retained and Spliced Intron # retained_intron 817670-817822 (orient:+) max_ev_support = 1 # spliced_intron 817670-817822 (orient:+) max_ev_support = 2 scaffold_7 + intron 817670-817822 asmbl_50443 scaffold_7 + retained_intron 817670-817822 asmbl_50447 // Retained and Spliced Intron # retained_intron 1034813-1034848 (orient:+) max_ev_support = 1 # spliced_intron 1034813-1034848 (orient:+) max_ev_support = 1 scaffold_7 + intron 1034813-1034848 asmbl_50454 scaffold_7 + retained_intron 1034813-1034848 asmbl_50455 // Exon Skipping and Retention # skipped_exon 1224787-1225948 (orient:+) max_ev_support = 2 # retained_exon 1225105-1225206 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 1225105-1225206 asmbl_50467 scaffold_7 + intron_skips_exon 1224787-1225948 asmbl_50466 // Exon Skipping and Retention # skipped_exon 1229953-1231347 (orient:+) max_ev_support = 2 # retained_exon 1231239-1231310 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 1231239-1231310 asmbl_50468,asmbl_50470,asmbl_50478,asmbl_50480 scaffold_7 + intron_skips_exon 1229953-1231347 asmbl_50474,asmbl_50483,asmbl_50484 // Retained and Spliced Intron # retained_intron 1235216-1235301 (orient:+) max_ev_support = 6 # spliced_intron 1235216-1235301 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235216-1235301 asmbl_50479,asmbl_50480 scaffold_7 + retained_intron 1235216-1235301 asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50485 // Retained and Spliced Intron # retained_intron 1235347-1235447 (orient:+) max_ev_support = 6 # spliced_intron 1235347-1235447 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235347-1235447 asmbl_50479,asmbl_50480 scaffold_7 + retained_intron 1235347-1235447 asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50485 // Retained and Spliced Intron # retained_intron 1235502-1235752 (orient:+) max_ev_support = 6 # spliced_intron 1235502-1235752 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235502-1235752 asmbl_50476,asmbl_50477,asmbl_50478,asmbl_50480 scaffold_7 + retained_intron 1235502-1235752 asmbl_50468,asmbl_50469 // Retained and Spliced Intron # retained_intron 1235502-1235757 (orient:+) max_ev_support = 6 # spliced_intron 1235502-1235757 (orient:+) max_ev_support = 2 scaffold_7 + intron 1235502-1235757 asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50485 scaffold_7 + retained_intron 1235502-1235757 asmbl_50468,asmbl_50469 // Retained and Spliced Intron # retained_intron 1235897-1236200 (orient:+) max_ev_support = 6 # spliced_intron 1235897-1236200 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1236200 asmbl_50476 scaffold_7 + retained_intron 1235897-1236200 asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480 // Retained and Spliced Intron # retained_intron 1235897-1236296 (orient:+) max_ev_support = 6 # spliced_intron 1235897-1236296 (orient:+) max_ev_support = 2 scaffold_7 + intron 1235897-1236296 asmbl_50472,asmbl_50477 scaffold_7 + retained_intron 1235897-1236296 asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480 // Retained and Spliced Intron # retained_intron 1235897-1236328 (orient:+) max_ev_support = 6 # spliced_intron 1235897-1236328 (orient:+) max_ev_support = 2 scaffold_7 + intron 1235897-1236328 asmbl_50473,asmbl_50478 scaffold_7 + retained_intron 1235897-1236328 asmbl_50468,asmbl_50469,asmbl_50470,asmbl_50474,asmbl_50479,asmbl_50480 // Retained and Spliced Intron # retained_intron 1235897-1237961 (orient:+) max_ev_support = 7 # spliced_intron 1235897-1237961 (orient:+) max_ev_support = 1 scaffold_7 + intron 1235897-1237961 asmbl_50485 scaffold_7 + retained_intron 1235897-1237961 asmbl_50468,asmbl_50480 // Retained and Spliced Intron # retained_intron 1236503-1236590 (orient:+) max_ev_support = 2 # spliced_intron 1236503-1236590 (orient:+) max_ev_support = 2 scaffold_7 + intron 1236503-1236590 asmbl_50469,asmbl_50470,asmbl_50472,asmbl_50473,asmbl_50474,asmbl_50479 scaffold_7 + retained_intron 1236503-1236590 asmbl_50468,asmbl_50476,asmbl_50477,asmbl_50478,asmbl_50480 // Retained and Spliced Intron # retained_intron 1233710-1233915 (orient:+) max_ev_support = 3 # spliced_intron 1233710-1233915 (orient:+) max_ev_support = 1 scaffold_7 + intron 1233710-1233915 asmbl_50468,asmbl_50480 scaffold_7 + retained_intron 1233710-1233915 asmbl_50470,asmbl_50483,asmbl_50484,asmbl_50485 // Retained and Spliced Intron # retained_intron 1233710-1235447 (orient:+) max_ev_support = 4 # spliced_intron 1233710-1235447 (orient:+) max_ev_support = 2 scaffold_7 + intron 1233710-1235447 asmbl_50474,asmbl_50476,asmbl_50477,asmbl_50478 scaffold_7 + retained_intron 1233710-1235447 asmbl_50470,asmbl_50485 // Exon Skipping and Retention # skipped_exon 1235897-1237961 (orient:+) max_ev_support = 1 # retained_exon 1236297-1236502 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 1236297-1236502 asmbl_50472 scaffold_7 + intron_skips_exon 1235897-1237961 asmbl_50485 // Exon Skipping and Retention # skipped_exon 1231311-1232985 (orient:+) max_ev_support = 3 # retained_exon 1231348-1231431 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 1231348-1231431 asmbl_50474,asmbl_50483,asmbl_50484 scaffold_7 + intron_skips_exon 1231311-1232985 asmbl_50468,asmbl_50470,asmbl_50478,asmbl_50480 // Exon Skipping and Retention # skipped_exon 1233710-1235447 (orient:+) max_ev_support = 2 # retained_exon 1233916-1235346 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 1233916-1235215,1235302-1235346 asmbl_50480 scaffold_7 + intron_skips_exon 1233710-1235447 asmbl_50474,asmbl_50476,asmbl_50477,asmbl_50478 // Retained and Spliced Intron # retained_intron 2515770-2515883 (orient:+) max_ev_support = 2 # spliced_intron 2515770-2515883 (orient:+) max_ev_support = 1 scaffold_7 + intron 2515770-2515883 asmbl_50531 scaffold_7 + retained_intron 2515770-2515883 asmbl_50530 // Retained and Spliced Intron # retained_intron 2734406-2734533 (orient:+) max_ev_support = 1 # spliced_intron 2734406-2734533 (orient:+) max_ev_support = 2 scaffold_7 + intron 2734406-2734533 asmbl_50541 scaffold_7 + retained_intron 2734406-2734533 asmbl_50542 // Exon Skipping and Retention # skipped_exon 4391931-4392703 (orient:+) max_ev_support = 1 # retained_exon 4392465-4392468 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 4392465-4392468 asmbl_50611,asmbl_50612 scaffold_7 + intron_skips_exon 4391931-4392703 asmbl_50613,asmbl_50614 // Retained and Spliced Intron # retained_intron 4391769-4391853 (orient:+) max_ev_support = 1 # spliced_intron 4391769-4391853 (orient:+) max_ev_support = 1 scaffold_7 + intron 4391769-4391853 asmbl_50611,asmbl_50613 scaffold_7 + retained_intron 4391769-4391853 asmbl_50612,asmbl_50614 // Exon Skipping and Retention # skipped_exon 4513125-4515473 (orient:+) max_ev_support = 1 # retained_exon 4514054-4514159 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 4514054-4514159 asmbl_50616 scaffold_7 + intron_skips_exon 4513125-4515473 asmbl_50619 // Retained and Spliced Intron # retained_intron 4544285-4544372 (orient:+) max_ev_support = 1 # spliced_intron 4544285-4544372 (orient:+) max_ev_support = 2 scaffold_7 + intron 4544285-4544372 asmbl_50626,asmbl_50628,asmbl_50629 scaffold_7 + retained_intron 4544285-4544372 asmbl_50627 // Retained and Spliced Intron # retained_intron 4545952-4546317 (orient:+) max_ev_support = 1 # spliced_intron 4545952-4546317 (orient:+) max_ev_support = 2 scaffold_7 + intron 4545952-4546317 asmbl_50626,asmbl_50627 scaffold_7 + retained_intron 4545952-4546317 asmbl_50628,asmbl_50629 // Retained and Spliced Intron # retained_intron 4544752-4545008 (orient:+) max_ev_support = 1 # spliced_intron 4544752-4545008 (orient:+) max_ev_support = 2 scaffold_7 + intron 4544752-4545008 asmbl_50626,asmbl_50627,asmbl_50628 scaffold_7 + retained_intron 4544752-4545008 asmbl_50629 // Retained and Spliced Intron # retained_intron 4545173-4545914 (orient:+) max_ev_support = 1 # spliced_intron 4545173-4545914 (orient:+) max_ev_support = 2 scaffold_7 + intron 4545173-4545914 asmbl_50626,asmbl_50627,asmbl_50628 scaffold_7 + retained_intron 4545173-4545914 asmbl_50629 // Exon Skipping and Retention # skipped_exon 4873474-4874735 (orient:+) max_ev_support = 2 # retained_exon 4873996-4874087 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 4873996-4874087 asmbl_50632 scaffold_7 + intron_skips_exon 4873474-4874735 asmbl_50631,asmbl_50634 // Retained and Spliced Intron # retained_intron 4875256-4875356 (orient:+) max_ev_support = 1 # spliced_intron 4875256-4875356 (orient:+) max_ev_support = 2 scaffold_7 + intron 4875256-4875356 asmbl_50631,asmbl_50632 scaffold_7 + retained_intron 4875256-4875356 asmbl_50634 // Retained and Spliced Intron # retained_intron 4884544-4884813 (orient:+) max_ev_support = 2 # spliced_intron 4884544-4884813 (orient:+) max_ev_support = 2 scaffold_7 + intron 4884544-4884813 asmbl_50635,asmbl_50638 scaffold_7 + retained_intron 4884544-4884813 asmbl_50636 // Retained and Spliced Intron # retained_intron 4915680-4915757 (orient:+) max_ev_support = 2 # spliced_intron 4915680-4915757 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915680-4915757 asmbl_50646 scaffold_7 + retained_intron 4915680-4915757 asmbl_50643,asmbl_50644 // Retained and Spliced Intron # retained_intron 4915758-4915841 (orient:+) max_ev_support = 2 # spliced_intron 4915758-4915841 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915758-4915841 asmbl_50645 scaffold_7 + retained_intron 4915758-4915841 asmbl_50643 // Retained and Spliced Intron # retained_intron 4915842-4915925 (orient:+) max_ev_support = 2 # spliced_intron 4915842-4915925 (orient:+) max_ev_support = 1 scaffold_7 + intron 4915842-4915925 asmbl_50644 scaffold_7 + retained_intron 4915842-4915925 asmbl_50643,asmbl_50646 // Exon Skipping and Retention # skipped_exon 4930791-4933374 (orient:+) max_ev_support = 1 # retained_exon 4931639-4931698 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 4931639-4931698 asmbl_50650,asmbl_50656,asmbl_50660,asmbl_50662 scaffold_7 + intron_skips_exon 4930791-4933374 asmbl_50651,asmbl_50652,asmbl_50654,asmbl_50661,asmbl_50663 // Retained and Spliced Intron # retained_intron 4934589-4935841 (orient:+) max_ev_support = 3 # spliced_intron 4934589-4935841 (orient:+) max_ev_support = 2 scaffold_7 + intron 4934589-4935841 asmbl_50653,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50662 scaffold_7 + retained_intron 4934589-4935841 asmbl_50650,asmbl_50651,asmbl_50652,asmbl_50654,asmbl_50663 // Exon Skipping and Retention # skipped_exon 4928728-4929215 (orient:+) max_ev_support = 2 # retained_exon 4928951-4929060 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 4928951-4929060 asmbl_50651,asmbl_50662 scaffold_7 + intron_skips_exon 4928728-4929215 asmbl_50652,asmbl_50654,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50663 // Retained and Spliced Intron # retained_intron 4931699-4933374 (orient:+) max_ev_support = 3 # spliced_intron 4931699-4933374 (orient:+) max_ev_support = 2 scaffold_7 + intron 4931699-4933374 asmbl_50656,asmbl_50660,asmbl_50662 scaffold_7 + retained_intron 4931699-4933374 asmbl_50653 // Retained and Spliced Intron # retained_intron 4931699-4933377 (orient:+) max_ev_support = 3 # spliced_intron 4931699-4933377 (orient:+) max_ev_support = 1 scaffold_7 + intron 4931699-4933377 asmbl_50650 scaffold_7 + retained_intron 4931699-4933377 asmbl_50653 // Retained and Spliced Intron # retained_intron 4930321-4930697 (orient:+) max_ev_support = 1 # spliced_intron 4930321-4930697 (orient:+) max_ev_support = 2 scaffold_7 + intron 4930321-4930697 asmbl_50651,asmbl_50652,asmbl_50656,asmbl_50660,asmbl_50661,asmbl_50662,asmbl_50663 scaffold_7 + retained_intron 4930321-4930697 asmbl_50654 // Retained and Spliced Intron # retained_intron 4936495-4936637 (orient:+) max_ev_support = 1 # spliced_intron 4936495-4936637 (orient:+) max_ev_support = 3 scaffold_7 + intron 4936495-4936637 asmbl_50650,asmbl_50651,asmbl_50652,asmbl_50653,asmbl_50654,asmbl_50656,asmbl_50661,asmbl_50662 scaffold_7 + retained_intron 4936495-4936637 asmbl_50660,asmbl_50663 // Exon Skipping and Retention # skipped_exon 5097042-5097668 (orient:+) max_ev_support = 2 # retained_exon 5097305-5097364 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 5097305-5097364 asmbl_50665 scaffold_7 + intron_skips_exon 5097042-5097668 asmbl_50666 // Retained and Spliced Intron # retained_intron 5235519-5236725 (orient:+) max_ev_support = 1 # spliced_intron 5235519-5236725 (orient:+) max_ev_support = 2 scaffold_7 + intron 5235519-5236725 asmbl_50682,asmbl_50686 scaffold_7 + retained_intron 5235519-5236725 asmbl_50681,asmbl_50687 // Exon Skipping and Retention # skipped_exon 5234496-5236725 (orient:+) max_ev_support = 1 # retained_exon 5235308-5235518 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 5235308-5235518 asmbl_50682 scaffold_7 + intron_skips_exon 5234496-5236725 asmbl_50684 // Exon Skipping and Retention # skipped_exon 5482741-5484064 (orient:+) max_ev_support = 2 # retained_exon 5483654-5483703 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 5483654-5483703 asmbl_50699 scaffold_7 + intron_skips_exon 5482741-5484064 asmbl_50698 // Retained and Spliced Intron # retained_intron 5928121-5928803 (orient:+) max_ev_support = 3 # spliced_intron 5928121-5928803 (orient:+) max_ev_support = 1 scaffold_7 + intron 5928121-5928803 asmbl_50715 scaffold_7 + retained_intron 5928121-5928803 asmbl_50713 // Retained and Spliced Intron # retained_intron 5928121-5929865 (orient:+) max_ev_support = 3 # spliced_intron 5928121-5929865 (orient:+) max_ev_support = 2 scaffold_7 + intron 5928121-5929865 asmbl_50714 scaffold_7 + retained_intron 5928121-5929865 asmbl_50713 // Retained and Spliced Intron # retained_intron 5928824-5929865 (orient:+) max_ev_support = 3 # spliced_intron 5928824-5929865 (orient:+) max_ev_support = 1 scaffold_7 + intron 5928824-5929865 asmbl_50715 scaffold_7 + retained_intron 5928824-5929865 asmbl_50713 // Retained and Spliced Intron # retained_intron 5927708-5928006 (orient:+) max_ev_support = 1 # spliced_intron 5927708-5928006 (orient:+) max_ev_support = 3 scaffold_7 + intron 5927708-5928006 asmbl_50713,asmbl_50714 scaffold_7 + retained_intron 5927708-5928006 asmbl_50715 // Retained and Spliced Intron # retained_intron 5927823-5928006 (orient:+) max_ev_support = 1 # spliced_intron 5927823-5928006 (orient:+) max_ev_support = 1 scaffold_7 + intron 5927823-5928006 asmbl_50716 scaffold_7 + retained_intron 5927823-5928006 asmbl_50715 // Exon Skipping and Retention # skipped_exon 5928121-5929865 (orient:+) max_ev_support = 2 # retained_exon 5928804-5928823 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 5928804-5928823 asmbl_50715 scaffold_7 + intron_skips_exon 5928121-5929865 asmbl_50714 // Exon Skipping and Retention # skipped_exon 6036365-6037066 (orient:+) max_ev_support = 3 # retained_exon 6036805-6036880 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 6036805-6036880 asmbl_50719 scaffold_7 + intron_skips_exon 6036365-6037066 asmbl_50720 // Retained and Spliced Intron # retained_intron 6205363-6205464 (orient:+) max_ev_support = 3 # spliced_intron 6205363-6205464 (orient:+) max_ev_support = 1 scaffold_7 + intron 6205363-6205464 asmbl_50738 scaffold_7 + retained_intron 6205363-6205464 asmbl_50737 // Exon Skipping and Retention # skipped_exon 7184630-7186249 (orient:+) max_ev_support = 2 # retained_exon 7184876-7184992 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 7184876-7184992 asmbl_50789,asmbl_50790 scaffold_7 + intron_skips_exon 7184630-7186249 asmbl_50788 // Exon Skipping and Retention # skipped_exon 7244469-7246065 (orient:+) max_ev_support = 2 # retained_exon 7245092-7245163 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 7245092-7245163 asmbl_50798 scaffold_7 + intron_skips_exon 7244469-7246065 asmbl_50799 // Exon Skipping and Retention # skipped_exon 7415203-7417634 (orient:+) max_ev_support = 2 # retained_exon 7416484-7417321 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 7416484-7416506,7417219-7417321 asmbl_50805 scaffold_7 + intron_skips_exon 7415203-7417634 asmbl_50806 // Exon Skipping and Retention # skipped_exon 8173018-8175492 (orient:+) max_ev_support = 2 # retained_exon 8173614-8173679 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8173614-8173679 asmbl_50844 scaffold_7 + intron_skips_exon 8173018-8175492 asmbl_50845 // Exon Skipping and Retention # skipped_exon 8171087-8173613 (orient:+) max_ev_support = 2 # retained_exon 8172976-8173017 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8172976-8173017 asmbl_50845 scaffold_7 + intron_skips_exon 8171087-8173613 asmbl_50844 // Exon Skipping and Retention # skipped_exon 8186128-8187038 (orient:+) max_ev_support = 2 # retained_exon 8186754-8186825 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8186754-8186825 asmbl_50847 scaffold_7 + intron_skips_exon 8186128-8187038 asmbl_50848 // Retained and Spliced Intron # retained_intron 8279661-8279764 (orient:+) max_ev_support = 1 # spliced_intron 8279661-8279764 (orient:+) max_ev_support = 2 scaffold_7 + intron 8279661-8279764 asmbl_50864,asmbl_50867 scaffold_7 + retained_intron 8279661-8279764 asmbl_50866 // Exon Skipping and Retention # skipped_exon 8302442-8303074 (orient:+) max_ev_support = 2 # retained_exon 8302921-8302957 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 8302921-8302957 asmbl_50869 scaffold_7 + intron_skips_exon 8302442-8303074 asmbl_50868 // Retained and Spliced Intron # retained_intron 8508720-8510079 (orient:+) max_ev_support = 1 # spliced_intron 8508720-8510079 (orient:+) max_ev_support = 2 scaffold_7 + intron 8508720-8510079 asmbl_50886 scaffold_7 + retained_intron 8508720-8510079 asmbl_50884,asmbl_50885,asmbl_50889,asmbl_50891 // Retained and Spliced Intron # retained_intron 8507767-8508686 (orient:+) max_ev_support = 1 # spliced_intron 8507767-8508686 (orient:+) max_ev_support = 2 scaffold_7 + intron 8507767-8508686 asmbl_50884,asmbl_50886,asmbl_50889 scaffold_7 + retained_intron 8507767-8508686 asmbl_50885,asmbl_50891 // Retained and Spliced Intron # retained_intron 8507767-8510079 (orient:+) max_ev_support = 1 # spliced_intron 8507767-8510079 (orient:+) max_ev_support = 2 scaffold_7 + intron 8507767-8510079 asmbl_50887 scaffold_7 + retained_intron 8507767-8510079 asmbl_50885,asmbl_50891 // Exon Skipping and Retention # skipped_exon 8507767-8510079 (orient:+) max_ev_support = 2 # retained_exon 8508687-8508719 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8508687-8508719 asmbl_50886 scaffold_7 + intron_skips_exon 8507767-8510079 asmbl_50887 // Retained and Spliced Intron # retained_intron 8518033-8520452 (orient:+) max_ev_support = 1 # spliced_intron 8518033-8520452 (orient:+) max_ev_support = 1 scaffold_7 + intron 8518033-8520452 asmbl_50897 scaffold_7 + retained_intron 8518033-8520452 asmbl_50896 // Exon Skipping and Retention # skipped_exon 8773897-8774927 (orient:+) max_ev_support = 1 # retained_exon 8774004-8774090 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 8774004-8774090 asmbl_50936 scaffold_7 + intron_skips_exon 8773897-8774927 asmbl_50935,asmbl_50938 // Retained and Spliced Intron # retained_intron 8795676-8795757 (orient:+) max_ev_support = 1 # spliced_intron 8795676-8795757 (orient:+) max_ev_support = 1 scaffold_7 + intron 8795676-8795757 asmbl_50941 scaffold_7 + retained_intron 8795676-8795757 asmbl_50940 // Exon Skipping and Retention # skipped_exon 8813443-8814448 (orient:+) max_ev_support = 2 # retained_exon 8813564-8814350 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 8813564-8813669,8814183-8814350 asmbl_50943 scaffold_7 + intron_skips_exon 8813443-8814448 asmbl_50942 // Retained and Spliced Intron # retained_intron 8842324-8844151 (orient:+) max_ev_support = 4 # spliced_intron 8842324-8844151 (orient:+) max_ev_support = 2 scaffold_7 + intron 8842324-8844151 asmbl_50947 scaffold_7 + retained_intron 8842324-8844151 asmbl_50946 // Retained and Spliced Intron # retained_intron 9149763-9149863 (orient:+) max_ev_support = 2 # spliced_intron 9149763-9149863 (orient:+) max_ev_support = 1 scaffold_7 + intron 9149763-9149863 asmbl_50954 scaffold_7 + retained_intron 9149763-9149863 asmbl_50953 // Retained and Spliced Intron # retained_intron 9312366-9312531 (orient:+) max_ev_support = 2 # spliced_intron 9312366-9312531 (orient:+) max_ev_support = 3 scaffold_7 + intron 9312366-9312531 asmbl_50958,asmbl_50960 scaffold_7 + retained_intron 9312366-9312531 asmbl_50959 // Retained and Spliced Intron # retained_intron 9311355-9311554 (orient:+) max_ev_support = 1 # spliced_intron 9311355-9311554 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311355-9311554 asmbl_50958,asmbl_50959 scaffold_7 + retained_intron 9311355-9311554 asmbl_50960 // Retained and Spliced Intron # retained_intron 9311727-9311873 (orient:+) max_ev_support = 1 # spliced_intron 9311727-9311873 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311727-9311873 asmbl_50958,asmbl_50959 scaffold_7 + retained_intron 9311727-9311873 asmbl_50960 // Retained and Spliced Intron # retained_intron 9311935-9312011 (orient:+) max_ev_support = 1 # spliced_intron 9311935-9312011 (orient:+) max_ev_support = 3 scaffold_7 + intron 9311935-9312011 asmbl_50958,asmbl_50959 scaffold_7 + retained_intron 9311935-9312011 asmbl_50960 // Retained and Spliced Intron # retained_intron 9312119-9312215 (orient:+) max_ev_support = 1 # spliced_intron 9312119-9312215 (orient:+) max_ev_support = 3 scaffold_7 + intron 9312119-9312215 asmbl_50958,asmbl_50959 scaffold_7 + retained_intron 9312119-9312215 asmbl_50960 // Retained and Spliced Intron # retained_intron 9583534-9583622 (orient:+) max_ev_support = 3 # spliced_intron 9583534-9583622 (orient:+) max_ev_support = 2 scaffold_7 + intron 9583534-9583622 asmbl_50966 scaffold_7 + retained_intron 9583534-9583622 asmbl_50965 // Exon Skipping and Retention # skipped_exon 10299648-10301691 (orient:+) max_ev_support = 2 # retained_exon 10300971-10301039 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 10300971-10301039 asmbl_50989 scaffold_7 + intron_skips_exon 10299648-10301691 asmbl_50990 // Retained and Spliced Intron # retained_intron 10543036-10543134 (orient:+) max_ev_support = 1 # spliced_intron 10543036-10543134 (orient:+) max_ev_support = 2 scaffold_7 + intron 10543036-10543134 asmbl_51010 scaffold_7 + retained_intron 10543036-10543134 asmbl_51011 // Retained and Spliced Intron # retained_intron 11144044-11145072 (orient:+) max_ev_support = 2 # spliced_intron 11144044-11145072 (orient:+) max_ev_support = 2 scaffold_7 + intron 11144044-11145072 asmbl_51030,asmbl_51032,asmbl_51033,asmbl_51034 scaffold_7 + retained_intron 11144044-11145072 asmbl_51031,asmbl_51035 // Retained and Spliced Intron # retained_intron 11145104-11146469 (orient:+) max_ev_support = 2 # spliced_intron 11145104-11146469 (orient:+) max_ev_support = 2 scaffold_7 + intron 11145104-11146469 asmbl_51030,asmbl_51034 scaffold_7 + retained_intron 11145104-11146469 asmbl_51031,asmbl_51032,asmbl_51033,asmbl_51035 // Retained and Spliced Intron # retained_intron 11146814-11146910 (orient:+) max_ev_support = 2 # spliced_intron 11146814-11146910 (orient:+) max_ev_support = 2 scaffold_7 + intron 11146814-11146910 asmbl_51030,asmbl_51032,asmbl_51035 scaffold_7 + retained_intron 11146814-11146910 asmbl_51031,asmbl_51033,asmbl_51034 // Retained and Spliced Intron # retained_intron 11147047-11147136 (orient:+) max_ev_support = 2 # spliced_intron 11147047-11147136 (orient:+) max_ev_support = 2 scaffold_7 + intron 11147047-11147136 asmbl_51030,asmbl_51032,asmbl_51035 scaffold_7 + retained_intron 11147047-11147136 asmbl_51031,asmbl_51033,asmbl_51034 // Retained and Spliced Intron # retained_intron 11412972-11413205 (orient:+) max_ev_support = 2 # spliced_intron 11412972-11413205 (orient:+) max_ev_support = 2 scaffold_7 + intron 11412972-11413205 asmbl_51054 scaffold_7 + retained_intron 11412972-11413205 asmbl_51053 // Retained and Spliced Intron # retained_intron 11413023-11413205 (orient:+) max_ev_support = 2 # spliced_intron 11413023-11413205 (orient:+) max_ev_support = 4 scaffold_7 + intron 11413023-11413205 asmbl_51052 scaffold_7 + retained_intron 11413023-11413205 asmbl_51053 // Exon Skipping and Retention # skipped_exon 11767988-11768392 (orient:+) max_ev_support = 1 # retained_exon 11768121-11768276 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 11768121-11768276 asmbl_51064,asmbl_51065,asmbl_51067 scaffold_7 + intron_skips_exon 11767988-11768392 asmbl_51066 // Retained and Spliced Intron # retained_intron 11851032-11851796 (orient:+) max_ev_support = 4 # spliced_intron 11851032-11851796 (orient:+) max_ev_support = 2 scaffold_7 + intron 11851032-11851796 asmbl_51073 scaffold_7 + retained_intron 11851032-11851796 asmbl_51071 // Retained and Spliced Intron # retained_intron 11851482-11851796 (orient:+) max_ev_support = 3 # spliced_intron 11851482-11851796 (orient:+) max_ev_support = 2 scaffold_7 + intron 11851482-11851796 asmbl_51072 scaffold_7 + retained_intron 11851482-11851796 asmbl_51071 // Retained and Spliced Intron # retained_intron 12053958-12054062 (orient:+) max_ev_support = 1 # spliced_intron 12053958-12054062 (orient:+) max_ev_support = 2 scaffold_7 + intron 12053958-12054062 asmbl_51085,asmbl_51088 scaffold_7 + retained_intron 12053958-12054062 asmbl_51087 // Retained and Spliced Intron # retained_intron 12053972-12054062 (orient:+) max_ev_support = 1 # spliced_intron 12053972-12054062 (orient:+) max_ev_support = 2 scaffold_7 + intron 12053972-12054062 asmbl_51084 scaffold_7 + retained_intron 12053972-12054062 asmbl_51087 // Retained and Spliced Intron # retained_intron 12058955-12059038 (orient:+) max_ev_support = 2 # spliced_intron 12058955-12059038 (orient:+) max_ev_support = 3 scaffold_7 + intron 12058955-12059038 asmbl_51089,asmbl_51091 scaffold_7 + retained_intron 12058955-12059038 asmbl_51090 // Retained and Spliced Intron # retained_intron 12082966-12083010 (orient:+) max_ev_support = 4 # spliced_intron 12082966-12083010 (orient:+) max_ev_support = 1 scaffold_7 + intron 12082966-12083010 asmbl_51099 scaffold_7 + retained_intron 12082966-12083010 asmbl_51096,asmbl_51097,asmbl_51098 // Retained and Spliced Intron # retained_intron 12082375-12082549 (orient:+) max_ev_support = 2 # spliced_intron 12082375-12082549 (orient:+) max_ev_support = 3 scaffold_7 + intron 12082375-12082549 asmbl_51096,asmbl_51100 scaffold_7 + retained_intron 12082375-12082549 asmbl_51097 // Retained and Spliced Intron # retained_intron 12082375-12082576 (orient:+) max_ev_support = 2 # spliced_intron 12082375-12082576 (orient:+) max_ev_support = 2 scaffold_7 + intron 12082375-12082576 asmbl_51098,asmbl_51099 scaffold_7 + retained_intron 12082375-12082576 asmbl_51097 // Exon Skipping and Retention # skipped_exon 12082936-12083422 (orient:+) max_ev_support = 1 # retained_exon 12083011-12083095 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 12083011-12083095 asmbl_51099 scaffold_7 + intron_skips_exon 12082936-12083422 asmbl_51100 // Retained and Spliced Intron # retained_intron 12259661-12259956 (orient:+) max_ev_support = 3 # spliced_intron 12259661-12259956 (orient:+) max_ev_support = 2 scaffold_7 + intron 12259661-12259956 asmbl_51106 scaffold_7 + retained_intron 12259661-12259956 asmbl_51105 // Exon Skipping and Retention # skipped_exon 12268983-12270353 (orient:+) max_ev_support = 1 # retained_exon 12269185-12269733 (orient:+) max_ev_support = 7 scaffold_7 + retained_exons 12269185-12269733 asmbl_51110 scaffold_7 + intron_skips_exon 12268983-12270353 asmbl_51116 // Retained and Spliced Intron # retained_intron 12271120-12271204 (orient:+) max_ev_support = 4 # spliced_intron 12271120-12271204 (orient:+) max_ev_support = 2 scaffold_7 + intron 12271120-12271204 asmbl_51114,asmbl_51115 scaffold_7 + retained_intron 12271120-12271204 asmbl_51111,asmbl_51113 // Retained and Spliced Intron # retained_intron 12270450-12271072 (orient:+) max_ev_support = 2 # spliced_intron 12270450-12271072 (orient:+) max_ev_support = 4 scaffold_7 + intron 12270450-12271072 asmbl_51111,asmbl_51114,asmbl_51115 scaffold_7 + retained_intron 12270450-12271072 asmbl_51113 // Retained and Spliced Intron # retained_intron 12270450-12271204 (orient:+) max_ev_support = 2 # spliced_intron 12270450-12271204 (orient:+) max_ev_support = 5 scaffold_7 + intron 12270450-12271204 asmbl_51110,asmbl_51116 scaffold_7 + retained_intron 12270450-12271204 asmbl_51113 // Exon Skipping and Retention # skipped_exon 12270450-12271204 (orient:+) max_ev_support = 5 # retained_exon 12271073-12271119 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 12271073-12271119 asmbl_51114,asmbl_51115 scaffold_7 + intron_skips_exon 12270450-12271204 asmbl_51110,asmbl_51116 // Retained and Spliced Intron # retained_intron 12279110-12279796 (orient:+) max_ev_support = 2 # spliced_intron 12279110-12279796 (orient:+) max_ev_support = 2 scaffold_7 + intron 12279110-12279796 asmbl_51117,asmbl_51119,asmbl_51120 scaffold_7 + retained_intron 12279110-12279796 asmbl_51118 // Retained and Spliced Intron # retained_intron 12278830-12278991 (orient:+) max_ev_support = 1 # spliced_intron 12278830-12278991 (orient:+) max_ev_support = 2 scaffold_7 + intron 12278830-12278991 asmbl_51117,asmbl_51120 scaffold_7 + retained_intron 12278830-12278991 asmbl_51119 // Retained and Spliced Intron # retained_intron 12277542-12278368 (orient:+) max_ev_support = 1 # spliced_intron 12277542-12278368 (orient:+) max_ev_support = 2 scaffold_7 + intron 12277542-12278368 asmbl_51117,asmbl_51119 scaffold_7 + retained_intron 12277542-12278368 asmbl_51120 // Exon Skipping and Retention # skipped_exon 12369012-12370152 (orient:+) max_ev_support = 2 # retained_exon 12369335-12369685 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 12369335-12369404,12369618-12369685 asmbl_51129 scaffold_7 + intron_skips_exon 12369012-12370152 asmbl_51126 // Retained and Spliced Intron # retained_intron 12410566-12410770 (orient:+) max_ev_support = 1 # spliced_intron 12410566-12410770 (orient:+) max_ev_support = 2 scaffold_7 + intron 12410566-12410770 asmbl_51134 scaffold_7 + retained_intron 12410566-12410770 asmbl_51135 // Retained and Spliced Intron # retained_intron 12412171-12412608 (orient:+) max_ev_support = 4 # spliced_intron 12412171-12412608 (orient:+) max_ev_support = 3 scaffold_7 + intron 12412171-12412608 asmbl_51138 scaffold_7 + retained_intron 12412171-12412608 asmbl_51136,asmbl_51137 // Retained and Spliced Intron # retained_intron 12412680-12412840 (orient:+) max_ev_support = 2 # spliced_intron 12412680-12412840 (orient:+) max_ev_support = 3 scaffold_7 + intron 12412680-12412840 asmbl_51138 scaffold_7 + retained_intron 12412680-12412840 asmbl_51136,asmbl_51137 // Retained and Spliced Intron # retained_intron 12412941-12413129 (orient:+) max_ev_support = 2 # spliced_intron 12412941-12413129 (orient:+) max_ev_support = 3 scaffold_7 + intron 12412941-12413129 asmbl_51137,asmbl_51138 scaffold_7 + retained_intron 12412941-12413129 asmbl_51136 // Retained and Spliced Intron # retained_intron 12437710-12437791 (orient:+) max_ev_support = 1 # spliced_intron 12437710-12437791 (orient:+) max_ev_support = 2 scaffold_7 + intron 12437710-12437791 asmbl_51143,asmbl_51144 scaffold_7 + retained_intron 12437710-12437791 asmbl_51145 // Retained and Spliced Intron # retained_intron 12437984-12438059 (orient:+) max_ev_support = 1 # spliced_intron 12437984-12438059 (orient:+) max_ev_support = 2 scaffold_7 + intron 12437984-12438059 asmbl_51143,asmbl_51144 scaffold_7 + retained_intron 12437984-12438059 asmbl_51145 // Retained and Spliced Intron # retained_intron 12614534-12614733 (orient:+) max_ev_support = 3 # spliced_intron 12614534-12614733 (orient:+) max_ev_support = 3 scaffold_7 + intron 12614534-12614733 asmbl_51158 scaffold_7 + retained_intron 12614534-12614733 asmbl_51157,asmbl_51159 // Retained and Spliced Intron # retained_intron 12614841-12615086 (orient:+) max_ev_support = 3 # spliced_intron 12614841-12615086 (orient:+) max_ev_support = 3 scaffold_7 + intron 12614841-12615086 asmbl_51158,asmbl_51159 scaffold_7 + retained_intron 12614841-12615086 asmbl_51157 // Retained and Spliced Intron # retained_intron 12727956-12728043 (orient:+) max_ev_support = 1 # spliced_intron 12727956-12728043 (orient:+) max_ev_support = 2 scaffold_7 + intron 12727956-12728043 asmbl_51175 scaffold_7 + retained_intron 12727956-12728043 asmbl_51176 // Retained and Spliced Intron # retained_intron 13204588-13204713 (orient:+) max_ev_support = 2 # spliced_intron 13204588-13204713 (orient:+) max_ev_support = 2 scaffold_7 + intron 13204588-13204713 asmbl_51195,asmbl_51196,asmbl_51197,asmbl_51198 scaffold_7 + retained_intron 13204588-13204713 asmbl_51194 // Retained and Spliced Intron # retained_intron 13204822-13204912 (orient:+) max_ev_support = 2 # spliced_intron 13204822-13204912 (orient:+) max_ev_support = 2 scaffold_7 + intron 13204822-13204912 asmbl_51195,asmbl_51197,asmbl_51198 scaffold_7 + retained_intron 13204822-13204912 asmbl_51194,asmbl_51196 // Retained and Spliced Intron # retained_intron 13205784-13205988 (orient:+) max_ev_support = 2 # spliced_intron 13205784-13205988 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205784-13205988 asmbl_51195,asmbl_51199 scaffold_7 + retained_intron 13205784-13205988 asmbl_51194,asmbl_51197,asmbl_51198 // Retained and Spliced Intron # retained_intron 13205487-13205684 (orient:+) max_ev_support = 2 # spliced_intron 13205487-13205684 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205487-13205684 asmbl_51194,asmbl_51195,asmbl_51198 scaffold_7 + retained_intron 13205487-13205684 asmbl_51197,asmbl_51199 // Retained and Spliced Intron # retained_intron 13205270-13205387 (orient:+) max_ev_support = 1 # spliced_intron 13205270-13205387 (orient:+) max_ev_support = 2 scaffold_7 + intron 13205270-13205387 asmbl_51194,asmbl_51195,asmbl_51197,asmbl_51198 scaffold_7 + retained_intron 13205270-13205387 asmbl_51199 // Retained and Spliced Intron # retained_intron 13210711-13210856 (orient:+) max_ev_support = 2 # spliced_intron 13210711-13210856 (orient:+) max_ev_support = 2 scaffold_7 + intron 13210711-13210856 asmbl_51201,asmbl_51202,asmbl_51203,asmbl_51206 scaffold_7 + retained_intron 13210711-13210856 asmbl_51204 // Retained and Spliced Intron # retained_intron 13221544-13221715 (orient:+) max_ev_support = 2 # spliced_intron 13221544-13221715 (orient:+) max_ev_support = 2 scaffold_7 + intron 13221544-13221715 asmbl_51210,asmbl_51212 scaffold_7 + retained_intron 13221544-13221715 asmbl_51209,asmbl_51211 // Retained and Spliced Intron # retained_intron 13546792-13546895 (orient:+) max_ev_support = 1 # spliced_intron 13546792-13546895 (orient:+) max_ev_support = 2 scaffold_7 + intron 13546792-13546895 asmbl_51240 scaffold_7 + retained_intron 13546792-13546895 asmbl_51243,asmbl_51244 // Retained and Spliced Intron # retained_intron 13546262-13546404 (orient:+) max_ev_support = 1 # spliced_intron 13546262-13546404 (orient:+) max_ev_support = 2 scaffold_7 + intron 13546262-13546404 asmbl_51240,asmbl_51243 scaffold_7 + retained_intron 13546262-13546404 asmbl_51244 // Exon Skipping and Retention # skipped_exon 13575743-13576051 (orient:+) max_ev_support = 3 # retained_exon 13575816-13575933 (orient:+) max_ev_support = 3 scaffold_7 + retained_exons 13575816-13575933 asmbl_51245 scaffold_7 + intron_skips_exon 13575743-13576051 asmbl_51246 // Retained and Spliced Intron # retained_intron 13809676-13810427 (orient:+) max_ev_support = 3 # spliced_intron 13809676-13810427 (orient:+) max_ev_support = 1 scaffold_7 + intron 13809676-13810427 asmbl_51259 scaffold_7 + retained_intron 13809676-13810427 asmbl_51258 // Retained and Spliced Intron # retained_intron 13889999-13890106 (orient:+) max_ev_support = 1 # spliced_intron 13889999-13890106 (orient:+) max_ev_support = 3 scaffold_7 + intron 13889999-13890106 asmbl_51264 scaffold_7 + retained_intron 13889999-13890106 asmbl_51266,asmbl_51267 // Retained and Spliced Intron # retained_intron 13891449-13891712 (orient:+) max_ev_support = 1 # spliced_intron 13891449-13891712 (orient:+) max_ev_support = 3 scaffold_7 + intron 13891449-13891712 asmbl_51264,asmbl_51267 scaffold_7 + retained_intron 13891449-13891712 asmbl_51266 // Retained and Spliced Intron # retained_intron 13952403-13952512 (orient:+) max_ev_support = 2 # spliced_intron 13952403-13952512 (orient:+) max_ev_support = 2 scaffold_7 + intron 13952403-13952512 asmbl_51271,asmbl_51272 scaffold_7 + retained_intron 13952403-13952512 asmbl_51270 // Retained and Spliced Intron # retained_intron 13953437-13953519 (orient:+) max_ev_support = 4 # spliced_intron 13953437-13953519 (orient:+) max_ev_support = 2 scaffold_7 + intron 13953437-13953519 asmbl_51271,asmbl_51272 scaffold_7 + retained_intron 13953437-13953519 asmbl_51270,asmbl_51273 // Exon Skipping and Retention # skipped_exon 13960169-13962754 (orient:+) max_ev_support = 1 # retained_exon 13960459-13960664 (orient:+) max_ev_support = 4 scaffold_7 + retained_exons 13960459-13960664 asmbl_51274 scaffold_7 + intron_skips_exon 13960169-13962754 asmbl_51279 // Retained and Spliced Intron # retained_intron 13960665-13960867 (orient:+) max_ev_support = 3 # spliced_intron 13960665-13960867 (orient:+) max_ev_support = 3 scaffold_7 + intron 13960665-13960867 asmbl_51274,asmbl_51275 scaffold_7 + retained_intron 13960665-13960867 asmbl_51276,asmbl_51277 // Retained and Spliced Intron # retained_intron 15247476-15247936 (orient:+) max_ev_support = 3 # spliced_intron 15247476-15247936 (orient:+) max_ev_support = 2 scaffold_7 + intron 15247476-15247936 asmbl_51302,asmbl_51305 scaffold_7 + retained_intron 15247476-15247936 asmbl_51300,asmbl_51301 // Retained and Spliced Intron # retained_intron 15248021-15248121 (orient:+) max_ev_support = 2 # spliced_intron 15248021-15248121 (orient:+) max_ev_support = 2 scaffold_7 + intron 15248021-15248121 asmbl_51300,asmbl_51302,asmbl_51303,asmbl_51305 scaffold_7 + retained_intron 15248021-15248121 asmbl_51301,asmbl_51304 // Exon Skipping and Retention # skipped_exon 15247104-15247936 (orient:+) max_ev_support = 2 # retained_exon 15247395-15247475 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 15247395-15247475 asmbl_51302 scaffold_7 + intron_skips_exon 15247104-15247936 asmbl_51303,asmbl_51304 // Retained and Spliced Intron # retained_intron 15270861-15271287 (orient:+) max_ev_support = 1 # spliced_intron 15270861-15271287 (orient:+) max_ev_support = 2 scaffold_7 + intron 15270861-15271287 asmbl_51308,asmbl_51312,asmbl_51314,asmbl_51315 scaffold_7 + retained_intron 15270861-15271287 asmbl_51311,asmbl_51313,asmbl_51317 // Retained and Spliced Intron # retained_intron 15270953-15271287 (orient:+) max_ev_support = 1 # spliced_intron 15270953-15271287 (orient:+) max_ev_support = 1 scaffold_7 + intron 15270953-15271287 asmbl_51316,asmbl_51319 scaffold_7 + retained_intron 15270953-15271287 asmbl_51311,asmbl_51313,asmbl_51317 // Retained and Spliced Intron # retained_intron 15272158-15272574 (orient:+) max_ev_support = 1 # spliced_intron 15272158-15272574 (orient:+) max_ev_support = 2 scaffold_7 + intron 15272158-15272574 asmbl_51308,asmbl_51313,asmbl_51314,asmbl_51316,asmbl_51319 scaffold_7 + retained_intron 15272158-15272574 asmbl_51311,asmbl_51312,asmbl_51315,asmbl_51317 // Retained and Spliced Intron # retained_intron 15269933-15270764 (orient:+) max_ev_support = 1 # spliced_intron 15269933-15270764 (orient:+) max_ev_support = 2 scaffold_7 + intron 15269933-15270764 asmbl_51308,asmbl_51311,asmbl_51312,asmbl_51313,asmbl_51314,asmbl_51315,asmbl_51316,asmbl_51318 scaffold_7 + retained_intron 15269933-15270764 asmbl_51317 // Retained and Spliced Intron # retained_intron 15595021-15595243 (orient:+) max_ev_support = 2 # spliced_intron 15595021-15595243 (orient:+) max_ev_support = 3 scaffold_7 + intron 15595021-15595243 asmbl_51328 scaffold_7 + retained_intron 15595021-15595243 asmbl_51329 // Retained and Spliced Intron # retained_intron 15595021-15595253 (orient:+) max_ev_support = 2 # spliced_intron 15595021-15595253 (orient:+) max_ev_support = 1 scaffold_7 + intron 15595021-15595253 asmbl_51330 scaffold_7 + retained_intron 15595021-15595253 asmbl_51329 // Exon Skipping and Retention # skipped_exon 15598541-15599723 (orient:+) max_ev_support = 1 # retained_exon 15599004-15599072 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 15599004-15599072 asmbl_51332 scaffold_7 + intron_skips_exon 15598541-15599723 asmbl_51333,asmbl_51334 // Exon Skipping and Retention # skipped_exon 17610958-17612226 (orient:+) max_ev_support = 1 # retained_exon 17611628-17611792 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 17611628-17611792 asmbl_51368 scaffold_7 + intron_skips_exon 17610958-17612226 asmbl_51370 // Exon Skipping and Retention # skipped_exon 17609629-17611627 (orient:+) max_ev_support = 2 # retained_exon 17610793-17610957 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 17610793-17610957 asmbl_51370 scaffold_7 + intron_skips_exon 17609629-17611627 asmbl_51368 // Retained and Spliced Intron # retained_intron 17685023-17685192 (orient:+) max_ev_support = 2 # spliced_intron 17685023-17685192 (orient:+) max_ev_support = 2 scaffold_7 + intron 17685023-17685192 asmbl_51373 scaffold_7 + retained_intron 17685023-17685192 asmbl_51374 // Exon Skipping and Retention # skipped_exon 17732017-17733017 (orient:+) max_ev_support = 1 # retained_exon 17732526-17732588 (orient:+) max_ev_support = 2 scaffold_7 + retained_exons 17732526-17732588 asmbl_51375 scaffold_7 + intron_skips_exon 17732017-17733017 asmbl_51377 // Retained and Spliced Intron # retained_intron 17808816-17808944 (orient:+) max_ev_support = 1 # spliced_intron 17808816-17808944 (orient:+) max_ev_support = 3 scaffold_7 + intron 17808816-17808944 asmbl_51381,asmbl_51382,asmbl_51386,asmbl_51388 scaffold_7 + retained_intron 17808816-17808944 asmbl_51384,asmbl_51385,asmbl_51387 // Retained and Spliced Intron # retained_intron 18002316-18002395 (orient:+) max_ev_support = 2 # spliced_intron 18002316-18002395 (orient:+) max_ev_support = 1 scaffold_7 + intron 18002316-18002395 asmbl_51399 scaffold_7 + retained_intron 18002316-18002395 asmbl_51398 // Retained and Spliced Intron # retained_intron 18127677-18127784 (orient:+) max_ev_support = 1 # spliced_intron 18127677-18127784 (orient:+) max_ev_support = 1 scaffold_7 + intron 18127677-18127784 asmbl_51400 scaffold_7 + retained_intron 18127677-18127784 asmbl_51401 // Exon Skipping and Retention # skipped_exon 18783525-18784249 (orient:+) max_ev_support = 1 # retained_exon 18784052-18784164 (orient:+) max_ev_support = 1 scaffold_7 + retained_exons 18784052-18784164 asmbl_51421,asmbl_51423,asmbl_51426 scaffold_7 + intron_skips_exon 18783525-18784249 asmbl_51422 // Retained and Spliced Intron # retained_intron 18790534-18791094 (orient:+) max_ev_support = 1 # spliced_intron 18790534-18791094 (orient:+) max_ev_support = 1 scaffold_7 + intron 18790534-18791094 asmbl_51425 scaffold_7 + retained_intron 18790534-18791094 asmbl_51421,asmbl_51422,asmbl_51423,asmbl_51424,asmbl_51426 // Retained and Spliced Intron # retained_intron 11417-11841 (orient:+) max_ev_support = 2 # spliced_intron 11417-11841 (orient:+) max_ev_support = 3 scaffold_70 + intron 11417-11841 asmbl_51549 scaffold_70 + retained_intron 11417-11841 asmbl_51550 // Exon Skipping and Retention # skipped_exon 1831-2666 (orient:-) max_ev_support = 1 # retained_exon 2439-2510 (orient:-) max_ev_support = 2 scaffold_723 - retained_exons 2439-2510 asmbl_51569 scaffold_723 - intron_skips_exon 1831-2666 asmbl_51572,asmbl_51574 // Retained and Spliced Intron # retained_intron 794-900 (orient:-) max_ev_support = 1 # spliced_intron 794-900 (orient:-) max_ev_support = 2 scaffold_723 - intron 794-900 asmbl_51569,asmbl_51570,asmbl_51572,asmbl_51573,asmbl_51574,asmbl_51575 scaffold_723 - retained_intron 794-900 asmbl_51571 // Retained and Spliced Intron # retained_intron 2273-2411 (orient:+) max_ev_support = 3 # spliced_intron 2273-2411 (orient:+) max_ev_support = 1 scaffold_731 + intron 2273-2411 asmbl_51584 scaffold_731 + retained_intron 2273-2411 asmbl_51583 // Retained and Spliced Intron # retained_intron 766-906 (orient:+) max_ev_support = 2 # spliced_intron 766-906 (orient:+) max_ev_support = 4 scaffold_732 + intron 766-906 asmbl_51586 scaffold_732 + retained_intron 766-906 asmbl_51587 // Retained and Spliced Intron # retained_intron 2408-2427 (orient:+) max_ev_support = 1 # spliced_intron 2408-2427 (orient:+) max_ev_support = 1 scaffold_736 + intron 2408-2427 asmbl_51591 scaffold_736 + retained_intron 2408-2427 asmbl_51592 // Retained and Spliced Intron # retained_intron 1999-2114 (orient:+) max_ev_support = 1 # spliced_intron 1999-2114 (orient:+) max_ev_support = 1 scaffold_759 + intron 1999-2114 asmbl_51607 scaffold_759 + retained_intron 1999-2114 asmbl_51606 // Retained and Spliced Intron # retained_intron 115861-115888 (orient:+) max_ev_support = 1 # spliced_intron 115861-115888 (orient:+) max_ev_support = 1 scaffold_8 + intron 115861-115888 asmbl_51639 scaffold_8 + retained_intron 115861-115888 asmbl_51640 // Exon Skipping and Retention # skipped_exon 739423-740608 (orient:+) max_ev_support = 1 # retained_exon 740014-740175 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 740014-740175 asmbl_51654 scaffold_8 + intron_skips_exon 739423-740608 asmbl_51655 // Exon Skipping and Retention # skipped_exon 738734-740013 (orient:+) max_ev_support = 1 # retained_exon 739261-739422 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 739261-739422 asmbl_51655 scaffold_8 + intron_skips_exon 738734-740013 asmbl_51654 // Retained and Spliced Intron # retained_intron 764211-764246 (orient:+) max_ev_support = 3 # spliced_intron 764211-764246 (orient:+) max_ev_support = 1 scaffold_8 + intron 764211-764246 asmbl_51660 scaffold_8 + retained_intron 764211-764246 asmbl_51659 // Exon Skipping and Retention # skipped_exon 1339847-1341081 (orient:+) max_ev_support = 1 # retained_exon 1340797-1340880 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 1340797-1340880 asmbl_51680 scaffold_8 + intron_skips_exon 1339847-1341081 asmbl_51681 // Exon Skipping and Retention # skipped_exon 1338884-1340796 (orient:+) max_ev_support = 1 # retained_exon 1339763-1339846 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 1339763-1339846 asmbl_51681 scaffold_8 + intron_skips_exon 1338884-1340796 asmbl_51680 // Retained and Spliced Intron # retained_intron 2690400-2690454 (orient:+) max_ev_support = 1 # spliced_intron 2690400-2690454 (orient:+) max_ev_support = 1 scaffold_8 + intron 2690400-2690454 asmbl_51725 scaffold_8 + retained_intron 2690400-2690454 asmbl_51726 // Retained and Spliced Intron # retained_intron 3433549-3433602 (orient:+) max_ev_support = 4 # spliced_intron 3433549-3433602 (orient:+) max_ev_support = 1 scaffold_8 + intron 3433549-3433602 asmbl_51752 scaffold_8 + retained_intron 3433549-3433602 asmbl_51751 // Exon Skipping and Retention # skipped_exon 3489917-3490757 (orient:+) max_ev_support = 2 # retained_exon 3490500-3490549 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 3490500-3490549 asmbl_51759,asmbl_51760,asmbl_51761 scaffold_8 + intron_skips_exon 3489917-3490757 asmbl_51758 // Retained and Spliced Intron # retained_intron 3615643-3615886 (orient:+) max_ev_support = 2 # spliced_intron 3615643-3615886 (orient:+) max_ev_support = 2 scaffold_8 + intron 3615643-3615886 asmbl_51774 scaffold_8 + retained_intron 3615643-3615886 asmbl_51773 // Retained and Spliced Intron # retained_intron 3615695-3615920 (orient:+) max_ev_support = 2 # spliced_intron 3615695-3615920 (orient:+) max_ev_support = 1 scaffold_8 + intron 3615695-3615920 asmbl_51778 scaffold_8 + retained_intron 3615695-3615920 asmbl_51773 // Retained and Spliced Intron # retained_intron 3796351-3797087 (orient:+) max_ev_support = 5 # spliced_intron 3796351-3797087 (orient:+) max_ev_support = 1 scaffold_8 + intron 3796351-3797087 asmbl_51792 scaffold_8 + retained_intron 3796351-3797087 asmbl_51791 // Retained and Spliced Intron # retained_intron 4082268-4082465 (orient:+) max_ev_support = 1 # spliced_intron 4082268-4082465 (orient:+) max_ev_support = 3 scaffold_8 + intron 4082268-4082465 asmbl_51797 scaffold_8 + retained_intron 4082268-4082465 asmbl_51798 // Retained and Spliced Intron # retained_intron 4083068-4083191 (orient:+) max_ev_support = 1 # spliced_intron 4083068-4083191 (orient:+) max_ev_support = 3 scaffold_8 + intron 4083068-4083191 asmbl_51797,asmbl_51798 scaffold_8 + retained_intron 4083068-4083191 asmbl_51799 // Retained and Spliced Intron # retained_intron 4186166-4186288 (orient:+) max_ev_support = 1 # spliced_intron 4186166-4186288 (orient:+) max_ev_support = 2 scaffold_8 + intron 4186166-4186288 asmbl_51803,asmbl_51805 scaffold_8 + retained_intron 4186166-4186288 asmbl_51806 // Retained and Spliced Intron # retained_intron 4233387-4233662 (orient:+) max_ev_support = 3 # spliced_intron 4233387-4233662 (orient:+) max_ev_support = 2 scaffold_8 + intron 4233387-4233662 asmbl_51811,asmbl_51812 scaffold_8 + retained_intron 4233387-4233662 asmbl_51810 // Retained and Spliced Intron # retained_intron 4234132-4234567 (orient:+) max_ev_support = 1 # spliced_intron 4234132-4234567 (orient:+) max_ev_support = 2 scaffold_8 + intron 4234132-4234567 asmbl_51810,asmbl_51811 scaffold_8 + retained_intron 4234132-4234567 asmbl_51812 // Retained and Spliced Intron # retained_intron 4287919-4288179 (orient:+) max_ev_support = 4 # spliced_intron 4287919-4288179 (orient:+) max_ev_support = 1 scaffold_8 + intron 4287919-4288179 asmbl_51814 scaffold_8 + retained_intron 4287919-4288179 asmbl_51813 // Retained and Spliced Intron # retained_intron 4299829-4300052 (orient:+) max_ev_support = 1 # spliced_intron 4299829-4300052 (orient:+) max_ev_support = 2 scaffold_8 + intron 4299829-4300052 asmbl_51815 scaffold_8 + retained_intron 4299829-4300052 asmbl_51816 // Exon Skipping and Retention # skipped_exon 4340424-4341174 (orient:+) max_ev_support = 2 # retained_exon 4340618-4340885 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4340618-4340885 asmbl_51822 scaffold_8 + intron_skips_exon 4340424-4341174 asmbl_51823 // Retained and Spliced Intron # retained_intron 4350354-4350381 (orient:+) max_ev_support = 3 # spliced_intron 4350354-4350381 (orient:+) max_ev_support = 1 scaffold_8 + intron 4350354-4350381 asmbl_51829 scaffold_8 + retained_intron 4350354-4350381 asmbl_51826 // Retained and Spliced Intron # retained_intron 4393829-4393852 (orient:+) max_ev_support = 4 # spliced_intron 4393829-4393852 (orient:+) max_ev_support = 1 scaffold_8 + intron 4393829-4393852 asmbl_51834 scaffold_8 + retained_intron 4393829-4393852 asmbl_51833 // Retained and Spliced Intron # retained_intron 4851222-4851393 (orient:+) max_ev_support = 1 # spliced_intron 4851222-4851393 (orient:+) max_ev_support = 3 scaffold_8 + intron 4851222-4851393 asmbl_51845 scaffold_8 + retained_intron 4851222-4851393 asmbl_51846,asmbl_51849 // Retained and Spliced Intron # retained_intron 4852903-4853082 (orient:+) max_ev_support = 2 # spliced_intron 4852903-4853082 (orient:+) max_ev_support = 3 scaffold_8 + intron 4852903-4853082 asmbl_51845,asmbl_51846,asmbl_51848,asmbl_51849 scaffold_8 + retained_intron 4852903-4853082 asmbl_51847 // Retained and Spliced Intron # retained_intron 4852233-4852322 (orient:+) max_ev_support = 1 # spliced_intron 4852233-4852322 (orient:+) max_ev_support = 3 scaffold_8 + intron 4852233-4852322 asmbl_51845,asmbl_51846 scaffold_8 + retained_intron 4852233-4852322 asmbl_51849,asmbl_51850 // Retained and Spliced Intron # retained_intron 4865417-4865526 (orient:+) max_ev_support = 1 # spliced_intron 4865417-4865526 (orient:+) max_ev_support = 2 scaffold_8 + intron 4865417-4865526 asmbl_51852 scaffold_8 + retained_intron 4865417-4865526 asmbl_51853 // Retained and Spliced Intron # retained_intron 4873126-4873930 (orient:+) max_ev_support = 3 # spliced_intron 4873126-4873930 (orient:+) max_ev_support = 2 scaffold_8 + intron 4873126-4873930 asmbl_51857,asmbl_51859 scaffold_8 + retained_intron 4873126-4873930 asmbl_51854,asmbl_51855 // Exon Skipping and Retention # skipped_exon 4870929-4871742 (orient:+) max_ev_support = 2 # retained_exon 4871128-4871175 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4871128-4871175 asmbl_51857,asmbl_51858 scaffold_8 + intron_skips_exon 4870929-4871742 asmbl_51855,asmbl_51856,asmbl_51859 // Exon Skipping and Retention # skipped_exon 4872344-4873930 (orient:+) max_ev_support = 2 # retained_exon 4873092-4873125 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 4873092-4873125 asmbl_51857,asmbl_51859 scaffold_8 + intron_skips_exon 4872344-4873930 asmbl_51856,asmbl_51858 // Retained and Spliced Intron # retained_intron 4899967-4900064 (orient:+) max_ev_support = 1 # spliced_intron 4899967-4900064 (orient:+) max_ev_support = 2 scaffold_8 + intron 4899967-4900064 asmbl_51860,asmbl_51861,asmbl_51866 scaffold_8 + retained_intron 4899967-4900064 asmbl_51865 // Retained and Spliced Intron # retained_intron 5433999-5434119 (orient:+) max_ev_support = 1 # spliced_intron 5433999-5434119 (orient:+) max_ev_support = 2 scaffold_8 + intron 5433999-5434119 asmbl_51870,asmbl_51871 scaffold_8 + retained_intron 5433999-5434119 asmbl_51872,asmbl_51873 // Retained and Spliced Intron # retained_intron 5433682-5433756 (orient:+) max_ev_support = 1 # spliced_intron 5433682-5433756 (orient:+) max_ev_support = 2 scaffold_8 + intron 5433682-5433756 asmbl_51870,asmbl_51871,asmbl_51872 scaffold_8 + retained_intron 5433682-5433756 asmbl_51873 // Retained and Spliced Intron # retained_intron 5433842-5433940 (orient:+) max_ev_support = 1 # spliced_intron 5433842-5433940 (orient:+) max_ev_support = 2 scaffold_8 + intron 5433842-5433940 asmbl_51870,asmbl_51871,asmbl_51872 scaffold_8 + retained_intron 5433842-5433940 asmbl_51873 // Exon Skipping and Retention # skipped_exon 5760911-5762372 (orient:+) max_ev_support = 1 # retained_exon 5761387-5761428 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 5761387-5761428 asmbl_51893 scaffold_8 + intron_skips_exon 5760911-5762372 asmbl_51894 // Exon Skipping and Retention # skipped_exon 5761429-5763686 (orient:+) max_ev_support = 2 # retained_exon 5762373-5762414 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 5762373-5762414 asmbl_51894 scaffold_8 + intron_skips_exon 5761429-5763686 asmbl_51893 // Retained and Spliced Intron # retained_intron 5857393-5857551 (orient:+) max_ev_support = 3 # spliced_intron 5857393-5857551 (orient:+) max_ev_support = 3 scaffold_8 + intron 5857393-5857551 asmbl_51896,asmbl_51897,asmbl_51899 scaffold_8 + retained_intron 5857393-5857551 asmbl_51898 // Retained and Spliced Intron # retained_intron 5968927-5969108 (orient:+) max_ev_support = 1 # spliced_intron 5968927-5969108 (orient:+) max_ev_support = 2 scaffold_8 + intron 5968927-5969108 asmbl_51903,asmbl_51905 scaffold_8 + retained_intron 5968927-5969108 asmbl_51904 // Retained and Spliced Intron # retained_intron 6027967-6028061 (orient:+) max_ev_support = 1 # spliced_intron 6027967-6028061 (orient:+) max_ev_support = 1 scaffold_8 + intron 6027967-6028061 asmbl_51911,asmbl_51912,asmbl_51914,asmbl_51915 scaffold_8 + retained_intron 6027967-6028061 asmbl_51909 // Retained and Spliced Intron # retained_intron 6028190-6028278 (orient:+) max_ev_support = 2 # spliced_intron 6028190-6028278 (orient:+) max_ev_support = 1 scaffold_8 + intron 6028190-6028278 asmbl_51911,asmbl_51912,asmbl_51914 scaffold_8 + retained_intron 6028190-6028278 asmbl_51909,asmbl_51915 // Retained and Spliced Intron # retained_intron 6028690-6028824 (orient:+) max_ev_support = 1 # spliced_intron 6028690-6028824 (orient:+) max_ev_support = 2 scaffold_8 + intron 6028690-6028824 asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915 scaffold_8 + retained_intron 6028690-6028824 asmbl_51911 // Retained and Spliced Intron # retained_intron 6028914-6029014 (orient:+) max_ev_support = 1 # spliced_intron 6028914-6029014 (orient:+) max_ev_support = 2 scaffold_8 + intron 6028914-6029014 asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915 scaffold_8 + retained_intron 6028914-6029014 asmbl_51911 // Retained and Spliced Intron # retained_intron 6029233-6029335 (orient:+) max_ev_support = 1 # spliced_intron 6029233-6029335 (orient:+) max_ev_support = 2 scaffold_8 + intron 6029233-6029335 asmbl_51909,asmbl_51912,asmbl_51914,asmbl_51915 scaffold_8 + retained_intron 6029233-6029335 asmbl_51911 // Retained and Spliced Intron # retained_intron 6028315-6028414 (orient:+) max_ev_support = 1 # spliced_intron 6028315-6028414 (orient:+) max_ev_support = 2 scaffold_8 + intron 6028315-6028414 asmbl_51909,asmbl_51911,asmbl_51912,asmbl_51914 scaffold_8 + retained_intron 6028315-6028414 asmbl_51915 // Retained and Spliced Intron # retained_intron 6036917-6037004 (orient:+) max_ev_support = 2 # spliced_intron 6036917-6037004 (orient:+) max_ev_support = 3 scaffold_8 + intron 6036917-6037004 asmbl_51916 scaffold_8 + retained_intron 6036917-6037004 asmbl_51917,asmbl_51918 // Retained and Spliced Intron # retained_intron 6307610-6307748 (orient:+) max_ev_support = 1 # spliced_intron 6307610-6307748 (orient:+) max_ev_support = 2 scaffold_8 + intron 6307610-6307748 asmbl_51945 scaffold_8 + retained_intron 6307610-6307748 asmbl_51947 // Retained and Spliced Intron # retained_intron 6309352-6309452 (orient:+) max_ev_support = 1 # spliced_intron 6309352-6309452 (orient:+) max_ev_support = 2 scaffold_8 + intron 6309352-6309452 asmbl_51945,asmbl_51946 scaffold_8 + retained_intron 6309352-6309452 asmbl_51949 // Retained and Spliced Intron # retained_intron 6309864-6309987 (orient:+) max_ev_support = 1 # spliced_intron 6309864-6309987 (orient:+) max_ev_support = 2 scaffold_8 + intron 6309864-6309987 asmbl_51945,asmbl_51946 scaffold_8 + retained_intron 6309864-6309987 asmbl_51949 // Retained and Spliced Intron # retained_intron 6714778-6715271 (orient:+) max_ev_support = 3 # spliced_intron 6714778-6715271 (orient:+) max_ev_support = 3 scaffold_8 + intron 6714778-6715271 asmbl_51951 scaffold_8 + retained_intron 6714778-6715271 asmbl_51952 // Exon Skipping and Retention # skipped_exon 6902999-6903581 (orient:+) max_ev_support = 2 # retained_exon 6903096-6903207 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 6903096-6903207 asmbl_51956,asmbl_51958 scaffold_8 + intron_skips_exon 6902999-6903581 asmbl_51953,asmbl_51955,asmbl_51959,asmbl_51960 // Retained and Spliced Intron # retained_intron 6902999-6903095 (orient:+) max_ev_support = 1 # spliced_intron 6902999-6903095 (orient:+) max_ev_support = 1 scaffold_8 + intron 6902999-6903095 asmbl_51956,asmbl_51958 scaffold_8 + retained_intron 6902999-6903095 asmbl_51957 // Retained and Spliced Intron # retained_intron 7508319-7508462 (orient:+) max_ev_support = 3 # spliced_intron 7508319-7508462 (orient:+) max_ev_support = 2 scaffold_8 + intron 7508319-7508462 asmbl_51977 scaffold_8 + retained_intron 7508319-7508462 asmbl_51976 // Retained and Spliced Intron # retained_intron 8180856-8181693 (orient:+) max_ev_support = 1 # spliced_intron 8180856-8181693 (orient:+) max_ev_support = 2 scaffold_8 + intron 8180856-8181693 asmbl_51988,asmbl_51989,asmbl_51990,asmbl_51991 scaffold_8 + retained_intron 8180856-8181693 asmbl_51992 // Retained and Spliced Intron # retained_intron 8733193-8733226 (orient:+) max_ev_support = 4 # spliced_intron 8733193-8733226 (orient:+) max_ev_support = 1 scaffold_8 + intron 8733193-8733226 asmbl_52011,asmbl_52012 scaffold_8 + retained_intron 8733193-8733226 asmbl_52010,asmbl_52013 // Retained and Spliced Intron # retained_intron 8733303-8733398 (orient:+) max_ev_support = 6 # spliced_intron 8733303-8733398 (orient:+) max_ev_support = 1 scaffold_8 + intron 8733303-8733398 asmbl_52012,asmbl_52013 scaffold_8 + retained_intron 8733303-8733398 asmbl_52010,asmbl_52011 // Exon Skipping and Retention # skipped_exon 8739454-8740005 (orient:+) max_ev_support = 2 # retained_exon 8739602-8739721 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 8739602-8739721 asmbl_52014 scaffold_8 + intron_skips_exon 8739454-8740005 asmbl_52015 // Retained and Spliced Intron # retained_intron 9586999-9587093 (orient:+) max_ev_support = 1 # spliced_intron 9586999-9587093 (orient:+) max_ev_support = 2 scaffold_8 + intron 9586999-9587093 asmbl_52069,asmbl_52071,asmbl_52072 scaffold_8 + retained_intron 9586999-9587093 asmbl_52073 // Retained and Spliced Intron # retained_intron 9651612-9651635 (orient:+) max_ev_support = 1 # spliced_intron 9651612-9651635 (orient:+) max_ev_support = 1 scaffold_8 + intron 9651612-9651635 asmbl_52079,asmbl_52080,asmbl_52081 scaffold_8 + retained_intron 9651612-9651635 asmbl_52076,asmbl_52077,asmbl_52078 // Exon Skipping and Retention # skipped_exon 9696519-9698018 (orient:+) max_ev_support = 2 # retained_exon 9697152-9697319 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9697152-9697319 asmbl_52082,asmbl_52084 scaffold_8 + intron_skips_exon 9696519-9698018 asmbl_52083 // Retained and Spliced Intron # retained_intron 9811870-9812023 (orient:+) max_ev_support = 2 # spliced_intron 9811870-9812023 (orient:+) max_ev_support = 2 scaffold_8 + intron 9811870-9812023 asmbl_52091 scaffold_8 + retained_intron 9811870-9812023 asmbl_52090 // Retained and Spliced Intron # retained_intron 9819500-9819912 (orient:+) max_ev_support = 3 # spliced_intron 9819500-9819912 (orient:+) max_ev_support = 3 scaffold_8 + intron 9819500-9819912 asmbl_52092 scaffold_8 + retained_intron 9819500-9819912 asmbl_52093 // Exon Skipping and Retention # skipped_exon 9866167-9867156 (orient:+) max_ev_support = 1 # retained_exon 9866264-9866359 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 9866264-9866359 asmbl_52100,asmbl_52104,asmbl_52106,asmbl_52107,asmbl_52108 scaffold_8 + intron_skips_exon 9866167-9867156 asmbl_52105,asmbl_52109 // Exon Skipping and Retention # skipped_exon 9868367-9869282 (orient:+) max_ev_support = 1 # retained_exon 9868875-9868994 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 9868875-9868994 asmbl_52101,asmbl_52103,asmbl_52104,asmbl_52105,asmbl_52106,asmbl_52107,asmbl_52108,asmbl_52109 scaffold_8 + intron_skips_exon 9868367-9869282 asmbl_52100,asmbl_52102,asmbl_52110 // Exon Skipping and Retention # skipped_exon 9867463-9868250 (orient:+) max_ev_support = 1 # retained_exon 9867562-9867573 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 9867562-9867573 asmbl_52105,asmbl_52106,asmbl_52107,asmbl_52108 scaffold_8 + intron_skips_exon 9867463-9868250 asmbl_52100,asmbl_52101,asmbl_52104,asmbl_52109 // Retained and Spliced Intron # retained_intron 9870650-9870718 (orient:+) max_ev_support = 1 # spliced_intron 9870650-9870718 (orient:+) max_ev_support = 1 scaffold_8 + intron 9870650-9870718 asmbl_52106 scaffold_8 + retained_intron 9870650-9870718 asmbl_52108 // Retained and Spliced Intron # retained_intron 9870650-9870745 (orient:+) max_ev_support = 1 # spliced_intron 9870650-9870745 (orient:+) max_ev_support = 1 scaffold_8 + intron 9870650-9870745 asmbl_52102,asmbl_52103 scaffold_8 + retained_intron 9870650-9870745 asmbl_52108 // Retained and Spliced Intron # retained_intron 9870650-9870748 (orient:+) max_ev_support = 1 # spliced_intron 9870650-9870748 (orient:+) max_ev_support = 1 scaffold_8 + intron 9870650-9870748 asmbl_52100,asmbl_52101,asmbl_52104,asmbl_52105,asmbl_52107,asmbl_52109,asmbl_52110 scaffold_8 + retained_intron 9870650-9870748 asmbl_52108 // Exon Skipping and Retention # skipped_exon 9881810-9883103 (orient:+) max_ev_support = 2 # retained_exon 9882143-9882528 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 9882143-9882246,9882405-9882528 asmbl_52115 scaffold_8 + intron_skips_exon 9881810-9883103 asmbl_52116 // Retained and Spliced Intron # retained_intron 9885234-9885406 (orient:+) max_ev_support = 1 # spliced_intron 9885234-9885406 (orient:+) max_ev_support = 3 scaffold_8 + intron 9885234-9885406 asmbl_52118,asmbl_52119 scaffold_8 + retained_intron 9885234-9885406 asmbl_52120 // Exon Skipping and Retention # skipped_exon 10211267-10211751 (orient:+) max_ev_support = 3 # retained_exon 10211399-10211437 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 10211399-10211437 asmbl_52143 scaffold_8 + intron_skips_exon 10211267-10211751 asmbl_52144 // Retained and Spliced Intron # retained_intron 10239564-10239921 (orient:+) max_ev_support = 3 # spliced_intron 10239564-10239921 (orient:+) max_ev_support = 2 scaffold_8 + intron 10239564-10239921 asmbl_52151,asmbl_52155 scaffold_8 + retained_intron 10239564-10239921 asmbl_52150 // Exon Skipping and Retention # skipped_exon 10238810-10239921 (orient:+) max_ev_support = 2 # retained_exon 10239507-10239563 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 10239507-10239563 asmbl_52151,asmbl_52155 scaffold_8 + intron_skips_exon 10238810-10239921 asmbl_52152 // Retained and Spliced Intron # retained_intron 10240030-10240454 (orient:+) max_ev_support = 2 # spliced_intron 10240030-10240454 (orient:+) max_ev_support = 3 scaffold_8 + intron 10240030-10240454 asmbl_52150,asmbl_52151,asmbl_52152,asmbl_52155 scaffold_8 + retained_intron 10240030-10240454 asmbl_52153 // Retained and Spliced Intron # retained_intron 10245429-10245640 (orient:+) max_ev_support = 1 # spliced_intron 10245429-10245640 (orient:+) max_ev_support = 2 scaffold_8 + intron 10245429-10245640 asmbl_52151,asmbl_52152,asmbl_52154 scaffold_8 + retained_intron 10245429-10245640 asmbl_52155 // Exon Skipping and Retention # skipped_exon 10482617-10484569 (orient:+) max_ev_support = 2 # retained_exon 10484123-10484486 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 10484123-10484272,10484364-10484486 asmbl_52160 scaffold_8 + intron_skips_exon 10482617-10484569 asmbl_52159 // Retained and Spliced Intron # retained_intron 10484487-10484569 (orient:+) max_ev_support = 1 # spliced_intron 10484487-10484569 (orient:+) max_ev_support = 2 scaffold_8 + intron 10484487-10484569 asmbl_52160 scaffold_8 + retained_intron 10484487-10484569 asmbl_52162 // Retained and Spliced Intron # retained_intron 10793464-10793556 (orient:+) max_ev_support = 2 # spliced_intron 10793464-10793556 (orient:+) max_ev_support = 2 scaffold_8 + intron 10793464-10793556 asmbl_52169 scaffold_8 + retained_intron 10793464-10793556 asmbl_52170 // Retained and Spliced Intron # retained_intron 10793464-10793568 (orient:+) max_ev_support = 2 # spliced_intron 10793464-10793568 (orient:+) max_ev_support = 2 scaffold_8 + intron 10793464-10793568 asmbl_52171 scaffold_8 + retained_intron 10793464-10793568 asmbl_52170 // Exon Skipping and Retention # skipped_exon 11110746-11111142 (orient:+) max_ev_support = 2 # retained_exon 11110926-11111044 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11110926-11111044 asmbl_52185 scaffold_8 + intron_skips_exon 11110746-11111142 asmbl_52184 // Retained and Spliced Intron # retained_intron 11111045-11111142 (orient:+) max_ev_support = 2 # spliced_intron 11111045-11111142 (orient:+) max_ev_support = 2 scaffold_8 + intron 11111045-11111142 asmbl_52185 scaffold_8 + retained_intron 11111045-11111142 asmbl_52186 // Retained and Spliced Intron # retained_intron 11195066-11195193 (orient:+) max_ev_support = 2 # spliced_intron 11195066-11195193 (orient:+) max_ev_support = 1 scaffold_8 + intron 11195066-11195193 asmbl_52191 scaffold_8 + retained_intron 11195066-11195193 asmbl_52190 // Retained and Spliced Intron # retained_intron 11243691-11244097 (orient:+) max_ev_support = 4 # spliced_intron 11243691-11244097 (orient:+) max_ev_support = 2 scaffold_8 + intron 11243691-11244097 asmbl_52194 scaffold_8 + retained_intron 11243691-11244097 asmbl_52193 // Retained and Spliced Intron # retained_intron 11275623-11276066 (orient:+) max_ev_support = 2 # spliced_intron 11275623-11276066 (orient:+) max_ev_support = 3 scaffold_8 + intron 11275623-11276066 asmbl_52199,asmbl_52200,asmbl_52202,asmbl_52203 scaffold_8 + retained_intron 11275623-11276066 asmbl_52201 // Retained and Spliced Intron # retained_intron 11272951-11273303 (orient:+) max_ev_support = 1 # spliced_intron 11272951-11273303 (orient:+) max_ev_support = 2 scaffold_8 + intron 11272951-11273303 asmbl_52200 scaffold_8 + retained_intron 11272951-11273303 asmbl_52202 // Exon Skipping and Retention # skipped_exon 11297094-11298140 (orient:+) max_ev_support = 3 # retained_exon 11297315-11297361 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 11297315-11297361 asmbl_52206,asmbl_52207 scaffold_8 + intron_skips_exon 11297094-11298140 asmbl_52204,asmbl_52205 // Exon Skipping and Retention # skipped_exon 11463679-11465108 (orient:+) max_ev_support = 1 # retained_exon 11463927-11463996 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 11463927-11463996 asmbl_52214 scaffold_8 + intron_skips_exon 11463679-11465108 asmbl_52215 // Exon Skipping and Retention # skipped_exon 11560060-11561679 (orient:+) max_ev_support = 1 # retained_exon 11560366-11560578 (orient:+) max_ev_support = 4 scaffold_8 + retained_exons 11560366-11560578 asmbl_52220 scaffold_8 + intron_skips_exon 11560060-11561679 asmbl_52221 // Exon Skipping and Retention # skipped_exon 11572603-11573251 (orient:+) max_ev_support = 3 # retained_exon 11572891-11572942 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11572891-11572942 asmbl_52226 scaffold_8 + intron_skips_exon 11572603-11573251 asmbl_52225 // Exon Skipping and Retention # skipped_exon 11581693-11582127 (orient:+) max_ev_support = 2 # retained_exon 11581936-11581992 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11581936-11581992 asmbl_52229 scaffold_8 + intron_skips_exon 11581693-11582127 asmbl_52228,asmbl_52230 // Retained and Spliced Intron # retained_intron 11580799-11580896 (orient:+) max_ev_support = 1 # spliced_intron 11580799-11580896 (orient:+) max_ev_support = 2 scaffold_8 + intron 11580799-11580896 asmbl_52228,asmbl_52229 scaffold_8 + retained_intron 11580799-11580896 asmbl_52230 // Retained and Spliced Intron # retained_intron 11744324-11744678 (orient:+) max_ev_support = 2 # spliced_intron 11744324-11744678 (orient:+) max_ev_support = 2 scaffold_8 + intron 11744324-11744678 asmbl_52247 scaffold_8 + retained_intron 11744324-11744678 asmbl_52248 // Retained and Spliced Intron # retained_intron 11810388-11810529 (orient:+) max_ev_support = 1 # spliced_intron 11810388-11810529 (orient:+) max_ev_support = 2 scaffold_8 + intron 11810388-11810529 asmbl_52255,asmbl_52257 scaffold_8 + retained_intron 11810388-11810529 asmbl_52258 // Retained and Spliced Intron # retained_intron 11810649-11810780 (orient:+) max_ev_support = 1 # spliced_intron 11810649-11810780 (orient:+) max_ev_support = 2 scaffold_8 + intron 11810649-11810780 asmbl_52255,asmbl_52257 scaffold_8 + retained_intron 11810649-11810780 asmbl_52258 // Exon Skipping and Retention # skipped_exon 11829975-11830992 (orient:+) max_ev_support = 1 # retained_exon 11830678-11830719 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11830678-11830719 asmbl_52261,asmbl_52263 scaffold_8 + intron_skips_exon 11829975-11830992 asmbl_52262 // Retained and Spliced Intron # retained_intron 11848560-11849714 (orient:+) max_ev_support = 2 # spliced_intron 11848560-11849714 (orient:+) max_ev_support = 1 scaffold_8 + intron 11848560-11849714 asmbl_52276,asmbl_52278,asmbl_52279 scaffold_8 + retained_intron 11848560-11849714 asmbl_52266,asmbl_52284 // Retained and Spliced Intron # retained_intron 11853070-11855193 (orient:+) max_ev_support = 1 # spliced_intron 11853070-11855193 (orient:+) max_ev_support = 2 scaffold_8 + intron 11853070-11855193 asmbl_52269,asmbl_52270,asmbl_52276 scaffold_8 + retained_intron 11853070-11855193 asmbl_52267,asmbl_52274,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 // Retained and Spliced Intron # retained_intron 11854269-11855193 (orient:+) max_ev_support = 1 # spliced_intron 11854269-11855193 (orient:+) max_ev_support = 1 scaffold_8 + intron 11854269-11855193 asmbl_52271 scaffold_8 + retained_intron 11854269-11855193 asmbl_52267,asmbl_52274,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 // Retained and Spliced Intron # retained_intron 11852296-11852549 (orient:+) max_ev_support = 2 # spliced_intron 11852296-11852549 (orient:+) max_ev_support = 2 scaffold_8 + intron 11852296-11852549 asmbl_52267,asmbl_52269,asmbl_52270,asmbl_52271,asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 scaffold_8 + retained_intron 11852296-11852549 asmbl_52268 // Retained and Spliced Intron # retained_intron 11846516-11848424 (orient:+) max_ev_support = 2 # spliced_intron 11846516-11848424 (orient:+) max_ev_support = 1 scaffold_8 + intron 11846516-11848424 asmbl_52270,asmbl_52282 scaffold_8 + retained_intron 11846516-11848424 asmbl_52269,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52283,asmbl_52284 // Exon Skipping and Retention # skipped_exon 11852641-11854227 (orient:+) max_ev_support = 1 # retained_exon 11853029-11853069 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 11853029-11853069 asmbl_52269,asmbl_52270,asmbl_52276 scaffold_8 + intron_skips_exon 11852641-11854227 asmbl_52271 // Retained and Spliced Intron # retained_intron 11850678-11850826 (orient:+) max_ev_support = 1 # spliced_intron 11850678-11850826 (orient:+) max_ev_support = 2 scaffold_8 + intron 11850678-11850826 asmbl_52269,asmbl_52270,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 scaffold_8 + retained_intron 11850678-11850826 asmbl_52271,asmbl_52272,asmbl_52273 // Retained and Spliced Intron # retained_intron 11850873-11851005 (orient:+) max_ev_support = 1 # spliced_intron 11850873-11851005 (orient:+) max_ev_support = 2 scaffold_8 + intron 11850873-11851005 asmbl_52269,asmbl_52270,asmbl_52273,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 scaffold_8 + retained_intron 11850873-11851005 asmbl_52271,asmbl_52272 // Exon Skipping and Retention # skipped_exon 11853070-11855193 (orient:+) max_ev_support = 2 # retained_exon 11854228-11854268 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11854228-11854268 asmbl_52271 scaffold_8 + intron_skips_exon 11853070-11855193 asmbl_52269,asmbl_52270,asmbl_52276 // Retained and Spliced Intron # retained_intron 11852641-11853028 (orient:+) max_ev_support = 1 # spliced_intron 11852641-11853028 (orient:+) max_ev_support = 2 scaffold_8 + intron 11852641-11853028 asmbl_52267,asmbl_52269,asmbl_52270,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52280 scaffold_8 + retained_intron 11852641-11853028 asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52279,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 // Retained and Spliced Intron # retained_intron 11852641-11854227 (orient:+) max_ev_support = 1 # spliced_intron 11852641-11854227 (orient:+) max_ev_support = 1 scaffold_8 + intron 11852641-11854227 asmbl_52271 scaffold_8 + retained_intron 11852641-11854227 asmbl_52272,asmbl_52273,asmbl_52274,asmbl_52279,asmbl_52281,asmbl_52282,asmbl_52283,asmbl_52284 // Retained and Spliced Intron # retained_intron 11851123-11851344 (orient:+) max_ev_support = 1 # spliced_intron 11851123-11851344 (orient:+) max_ev_support = 2 scaffold_8 + intron 11851123-11851344 asmbl_52269,asmbl_52270,asmbl_52271,asmbl_52272,asmbl_52274,asmbl_52276,asmbl_52277,asmbl_52278,asmbl_52279,asmbl_52282,asmbl_52283,asmbl_52284 scaffold_8 + retained_intron 11851123-11851344 asmbl_52273,asmbl_52280,asmbl_52281 // Exon Skipping and Retention # skipped_exon 11848560-11850658 (orient:+) max_ev_support = 2 # retained_exon 11849715-11849732 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 11849715-11849732 asmbl_52276,asmbl_52278,asmbl_52279 scaffold_8 + intron_skips_exon 11848560-11850658 asmbl_52269,asmbl_52270,asmbl_52274,asmbl_52277,asmbl_52280,asmbl_52281,asmbl_52282,asmbl_52283 // Retained and Spliced Intron # retained_intron 11952271-11952696 (orient:+) max_ev_support = 1 # spliced_intron 11952271-11952696 (orient:+) max_ev_support = 1 scaffold_8 + intron 11952271-11952696 asmbl_52289 scaffold_8 + retained_intron 11952271-11952696 asmbl_52287,asmbl_52288 // Exon Skipping and Retention # skipped_exon 12027188-12027729 (orient:+) max_ev_support = 2 # retained_exon 12027368-12027452 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 12027368-12027452 asmbl_52293 scaffold_8 + intron_skips_exon 12027188-12027729 asmbl_52294 // Retained and Spliced Intron # retained_intron 12027883-12028191 (orient:+) max_ev_support = 2 # spliced_intron 12027883-12028191 (orient:+) max_ev_support = 3 scaffold_8 + intron 12027883-12028191 asmbl_52293,asmbl_52295 scaffold_8 + retained_intron 12027883-12028191 asmbl_52294 // Retained and Spliced Intron # retained_intron 12560537-12560677 (orient:+) max_ev_support = 1 # spliced_intron 12560537-12560677 (orient:+) max_ev_support = 3 scaffold_8 + intron 12560537-12560677 asmbl_52310 scaffold_8 + retained_intron 12560537-12560677 asmbl_52311 // Exon Skipping and Retention # skipped_exon 12690007-12691737 (orient:+) max_ev_support = 1 # retained_exon 12690957-12690998 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 12690957-12690998 asmbl_52318,asmbl_52321 scaffold_8 + intron_skips_exon 12690007-12691737 asmbl_52317,asmbl_52319,asmbl_52320 // Retained and Spliced Intron # retained_intron 12692846-12692968 (orient:+) max_ev_support = 1 # spliced_intron 12692846-12692968 (orient:+) max_ev_support = 1 scaffold_8 + intron 12692846-12692968 asmbl_52317,asmbl_52318,asmbl_52320,asmbl_52321,asmbl_52322 scaffold_8 + retained_intron 12692846-12692968 asmbl_52319 // Exon Skipping and Retention # skipped_exon 12693269-12693431 (orient:+) max_ev_support = 1 # retained_exon 12693353-12693373 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 12693353-12693373 asmbl_52319,asmbl_52320,asmbl_52321 scaffold_8 + intron_skips_exon 12693269-12693431 asmbl_52317,asmbl_52318,asmbl_52322 // Retained and Spliced Intron # retained_intron 12693248-12693352 (orient:+) max_ev_support = 1 # spliced_intron 12693248-12693352 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693248-12693352 asmbl_52319,asmbl_52320,asmbl_52321 scaffold_8 + retained_intron 12693248-12693352 asmbl_52323,asmbl_52324 // Retained and Spliced Intron # retained_intron 12693269-12693431 (orient:+) max_ev_support = 1 # spliced_intron 12693269-12693431 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693269-12693431 asmbl_52317,asmbl_52318,asmbl_52322 scaffold_8 + retained_intron 12693269-12693431 asmbl_52323,asmbl_52324 // Retained and Spliced Intron # retained_intron 12693374-12693431 (orient:+) max_ev_support = 1 # spliced_intron 12693374-12693431 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693374-12693431 asmbl_52319,asmbl_52320,asmbl_52321 scaffold_8 + retained_intron 12693374-12693431 asmbl_52323,asmbl_52324 // Retained and Spliced Intron # retained_intron 12693755-12693924 (orient:+) max_ev_support = 1 # spliced_intron 12693755-12693924 (orient:+) max_ev_support = 1 scaffold_8 + intron 12693755-12693924 asmbl_52317,asmbl_52318,asmbl_52319,asmbl_52320,asmbl_52321,asmbl_52322,asmbl_52324 scaffold_8 + retained_intron 12693755-12693924 asmbl_52323 // Exon Skipping and Retention # skipped_exon 13256225-13256725 (orient:+) max_ev_support = 2 # retained_exon 13256459-13256547 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 13256459-13256547 asmbl_52342 scaffold_8 + intron_skips_exon 13256225-13256725 asmbl_52343 // Retained and Spliced Intron # retained_intron 14130033-14130103 (orient:+) max_ev_support = 1 # spliced_intron 14130033-14130103 (orient:+) max_ev_support = 2 scaffold_8 + intron 14130033-14130103 asmbl_52351 scaffold_8 + retained_intron 14130033-14130103 asmbl_52352 // Retained and Spliced Intron # retained_intron 14432596-14432761 (orient:+) max_ev_support = 1 # spliced_intron 14432596-14432761 (orient:+) max_ev_support = 2 scaffold_8 + intron 14432596-14432761 asmbl_52360 scaffold_8 + retained_intron 14432596-14432761 asmbl_52363 // Exon Skipping and Retention # skipped_exon 14569488-14571071 (orient:+) max_ev_support = 1 # retained_exon 14569707-14569797 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 14569707-14569797 asmbl_52369 scaffold_8 + intron_skips_exon 14569488-14571071 asmbl_52377 // Retained and Spliced Intron # retained_intron 14569488-14569706 (orient:+) max_ev_support = 1 # spliced_intron 14569488-14569706 (orient:+) max_ev_support = 2 scaffold_8 + intron 14569488-14569706 asmbl_52369 scaffold_8 + retained_intron 14569488-14569706 asmbl_52376 // Exon Skipping and Retention # skipped_exon 14569798-14572335 (orient:+) max_ev_support = 2 # retained_exon 14571072-14571162 (orient:+) max_ev_support = 1 scaffold_8 + retained_exons 14571072-14571162 asmbl_52377 scaffold_8 + intron_skips_exon 14569798-14572335 asmbl_52369,asmbl_52376 // Exon Skipping and Retention # skipped_exon 15335576-15336244 (orient:+) max_ev_support = 2 # retained_exon 15335814-15336002 (orient:+) max_ev_support = 2 scaffold_8 + retained_exons 15335814-15336002 asmbl_52393 scaffold_8 + intron_skips_exon 15335576-15336244 asmbl_52392 // Retained and Spliced Intron # retained_intron 15345104-15345457 (orient:+) max_ev_support = 3 # spliced_intron 15345104-15345457 (orient:+) max_ev_support = 3 scaffold_8 + intron 15345104-15345457 asmbl_52396 scaffold_8 + retained_intron 15345104-15345457 asmbl_52395 // Retained and Spliced Intron # retained_intron 15734313-15734436 (orient:+) max_ev_support = 2 # spliced_intron 15734313-15734436 (orient:+) max_ev_support = 3 scaffold_8 + intron 15734313-15734436 asmbl_52408,asmbl_52410 scaffold_8 + retained_intron 15734313-15734436 asmbl_52409 // Retained and Spliced Intron # retained_intron 15733421-15733539 (orient:+) max_ev_support = 2 # spliced_intron 15733421-15733539 (orient:+) max_ev_support = 3 scaffold_8 + intron 15733421-15733539 asmbl_52408,asmbl_52409 scaffold_8 + retained_intron 15733421-15733539 asmbl_52410 // Retained and Spliced Intron # retained_intron 16230070-16230333 (orient:+) max_ev_support = 3 # spliced_intron 16230070-16230333 (orient:+) max_ev_support = 3 scaffold_8 + intron 16230070-16230333 asmbl_52428,asmbl_52429 scaffold_8 + retained_intron 16230070-16230333 asmbl_52430 // Retained and Spliced Intron # retained_intron 16279130-16279219 (orient:+) max_ev_support = 2 # spliced_intron 16279130-16279219 (orient:+) max_ev_support = 2 scaffold_8 + intron 16279130-16279219 asmbl_52437 scaffold_8 + retained_intron 16279130-16279219 asmbl_52436 // Retained and Spliced Intron # retained_intron 16384026-16384136 (orient:+) max_ev_support = 1 # spliced_intron 16384026-16384136 (orient:+) max_ev_support = 3 scaffold_8 + intron 16384026-16384136 asmbl_52438 scaffold_8 + retained_intron 16384026-16384136 asmbl_52439 // Exon Skipping and Retention # skipped_exon 16656073-16657032 (orient:+) max_ev_support = 3 # retained_exon 16656666-16656851 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 16656666-16656851 asmbl_52453 scaffold_8 + intron_skips_exon 16656073-16657032 asmbl_52454 // Exon Skipping and Retention # skipped_exon 17454124-17455338 (orient:+) max_ev_support = 3 # retained_exon 17454425-17454460 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 17454425-17454460 asmbl_52466 scaffold_8 + intron_skips_exon 17454124-17455338 asmbl_52467 // Retained and Spliced Intron # retained_intron 17454124-17454424 (orient:+) max_ev_support = 1 # spliced_intron 17454124-17454424 (orient:+) max_ev_support = 3 scaffold_8 + intron 17454124-17454424 asmbl_52466 scaffold_8 + retained_intron 17454124-17454424 asmbl_52469 // Retained and Spliced Intron # retained_intron 17494980-17495324 (orient:+) max_ev_support = 5 # spliced_intron 17494980-17495324 (orient:+) max_ev_support = 1 scaffold_8 + intron 17494980-17495324 asmbl_52476 scaffold_8 + retained_intron 17494980-17495324 asmbl_52470 // Retained and Spliced Intron # retained_intron 17498151-17498237 (orient:+) max_ev_support = 1 # spliced_intron 17498151-17498237 (orient:+) max_ev_support = 2 scaffold_8 + intron 17498151-17498237 asmbl_52471,asmbl_52474,asmbl_52477,asmbl_52480 scaffold_8 + retained_intron 17498151-17498237 asmbl_52478,asmbl_52479 // Exon Skipping and Retention # skipped_exon 17810310-17813119 (orient:+) max_ev_support = 3 # retained_exon 17811862-17811900 (orient:+) max_ev_support = 3 scaffold_8 + retained_exons 17811862-17811900 asmbl_52499,asmbl_52502 scaffold_8 + intron_skips_exon 17810310-17813119 asmbl_52498,asmbl_52503 // Retained and Spliced Intron # retained_intron 17815077-17815245 (orient:+) max_ev_support = 1 # spliced_intron 17815077-17815245 (orient:+) max_ev_support = 3 scaffold_8 + intron 17815077-17815245 asmbl_52498,asmbl_52499,asmbl_52505 scaffold_8 + retained_intron 17815077-17815245 asmbl_52502,asmbl_52504 // Retained and Spliced Intron # retained_intron 17815077-17815250 (orient:+) max_ev_support = 1 # spliced_intron 17815077-17815250 (orient:+) max_ev_support = 1 scaffold_8 + intron 17815077-17815250 asmbl_52503,asmbl_52506 scaffold_8 + retained_intron 17815077-17815250 asmbl_52502,asmbl_52504 // Retained and Spliced Intron # retained_intron 17839229-17839334 (orient:+) max_ev_support = 2 # spliced_intron 17839229-17839334 (orient:+) max_ev_support = 3 scaffold_8 + intron 17839229-17839334 asmbl_52507 scaffold_8 + retained_intron 17839229-17839334 asmbl_52508 // Retained and Spliced Intron # retained_intron 17944235-17944477 (orient:+) max_ev_support = 2 # spliced_intron 17944235-17944477 (orient:+) max_ev_support = 2 scaffold_8 + intron 17944235-17944477 asmbl_52513 scaffold_8 + retained_intron 17944235-17944477 asmbl_52514 // Retained and Spliced Intron # retained_intron 18089675-18090313 (orient:+) max_ev_support = 2 # spliced_intron 18089675-18090313 (orient:+) max_ev_support = 2 scaffold_8 + intron 18089675-18090313 asmbl_52518 scaffold_8 + retained_intron 18089675-18090313 asmbl_52519 // Retained and Spliced Intron # retained_intron 18089772-18090313 (orient:+) max_ev_support = 2 # spliced_intron 18089772-18090313 (orient:+) max_ev_support = 1 scaffold_8 + intron 18089772-18090313 asmbl_52520 scaffold_8 + retained_intron 18089772-18090313 asmbl_52519 // Retained and Spliced Intron # retained_intron 18108227-18108429 (orient:+) max_ev_support = 3 # spliced_intron 18108227-18108429 (orient:+) max_ev_support = 3 scaffold_8 + intron 18108227-18108429 asmbl_52525 scaffold_8 + retained_intron 18108227-18108429 asmbl_52526 // Retained and Spliced Intron # retained_intron 18108298-18108429 (orient:+) max_ev_support = 3 # spliced_intron 18108298-18108429 (orient:+) max_ev_support = 1 scaffold_8 + intron 18108298-18108429 asmbl_52527 scaffold_8 + retained_intron 18108298-18108429 asmbl_52526 // Retained and Spliced Intron # retained_intron 18254364-18254410 (orient:+) max_ev_support = 2 # spliced_intron 18254364-18254410 (orient:+) max_ev_support = 1 scaffold_8 + intron 18254364-18254410 asmbl_52539 scaffold_8 + retained_intron 18254364-18254410 asmbl_52537 // Retained and Spliced Intron # retained_intron 18421281-18421426 (orient:+) max_ev_support = 1 # spliced_intron 18421281-18421426 (orient:+) max_ev_support = 2 scaffold_8 + intron 18421281-18421426 asmbl_52540 scaffold_8 + retained_intron 18421281-18421426 asmbl_52541,asmbl_52542 // Retained and Spliced Intron # retained_intron 18541820-18542760 (orient:+) max_ev_support = 2 # spliced_intron 18541820-18542760 (orient:+) max_ev_support = 2 scaffold_8 + intron 18541820-18542760 asmbl_52556 scaffold_8 + retained_intron 18541820-18542760 asmbl_52557 // Exon Skipping and Retention # skipped_exon 14786-15882 (orient:-) max_ev_support = 3 # retained_exon 15594-15665 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 15594-15665 asmbl_52671 scaffold_8 - intron_skips_exon 14786-15882 asmbl_52670 // Retained and Spliced Intron # retained_intron 1207989-1208036 (orient:-) max_ev_support = 1 # spliced_intron 1207989-1208036 (orient:-) max_ev_support = 1 scaffold_8 - intron 1207989-1208036 asmbl_52691 scaffold_8 - retained_intron 1207989-1208036 asmbl_52692,asmbl_52693 // Retained and Spliced Intron # retained_intron 1207473-1207512 (orient:-) max_ev_support = 1 # spliced_intron 1207473-1207512 (orient:-) max_ev_support = 1 scaffold_8 - intron 1207473-1207512 asmbl_52691 scaffold_8 - retained_intron 1207473-1207512 asmbl_52693 // Retained and Spliced Intron # retained_intron 1207493-1207512 (orient:-) max_ev_support = 1 # spliced_intron 1207493-1207512 (orient:-) max_ev_support = 1 scaffold_8 - intron 1207493-1207512 asmbl_52692 scaffold_8 - retained_intron 1207493-1207512 asmbl_52693 // Retained and Spliced Intron # retained_intron 1801692-1801727 (orient:-) max_ev_support = 1 # spliced_intron 1801692-1801727 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801692-1801727 asmbl_52700 scaffold_8 - retained_intron 1801692-1801727 asmbl_52698,asmbl_52699 // Retained and Spliced Intron # retained_intron 1801739-1801810 (orient:-) max_ev_support = 1 # spliced_intron 1801739-1801810 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801739-1801810 asmbl_52699 scaffold_8 - retained_intron 1801739-1801810 asmbl_52700 // Retained and Spliced Intron # retained_intron 1801775-1801810 (orient:-) max_ev_support = 1 # spliced_intron 1801775-1801810 (orient:-) max_ev_support = 1 scaffold_8 - intron 1801775-1801810 asmbl_52698 scaffold_8 - retained_intron 1801775-1801810 asmbl_52700 // Exon Skipping and Retention # skipped_exon 2438124-2439404 (orient:-) max_ev_support = 2 # retained_exon 2438698-2438809 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2438698-2438809 asmbl_52704 scaffold_8 - intron_skips_exon 2438124-2439404 asmbl_52703 // Retained and Spliced Intron # retained_intron 2655012-2655188 (orient:-) max_ev_support = 2 # spliced_intron 2655012-2655188 (orient:-) max_ev_support = 2 scaffold_8 - intron 2655012-2655188 asmbl_52706 scaffold_8 - retained_intron 2655012-2655188 asmbl_52705 // Retained and Spliced Intron # retained_intron 2846840-2846887 (orient:-) max_ev_support = 3 # spliced_intron 2846840-2846887 (orient:-) max_ev_support = 1 scaffold_8 - intron 2846840-2846887 asmbl_52711 scaffold_8 - retained_intron 2846840-2846887 asmbl_52710 // Exon Skipping and Retention # skipped_exon 2851215-2851882 (orient:-) max_ev_support = 2 # retained_exon 2851268-2851381 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2851268-2851381 asmbl_52710,asmbl_52713 scaffold_8 - intron_skips_exon 2851215-2851882 asmbl_52711 // Exon Skipping and Retention # skipped_exon 2850138-2851267 (orient:-) max_ev_support = 2 # retained_exon 2851101-2851214 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 2851101-2851214 asmbl_52711 scaffold_8 - intron_skips_exon 2850138-2851267 asmbl_52710,asmbl_52713 // Retained and Spliced Intron # retained_intron 3101869-3101985 (orient:-) max_ev_support = 1 # spliced_intron 3101869-3101985 (orient:-) max_ev_support = 2 scaffold_8 - intron 3101869-3101985 asmbl_52721,asmbl_52722,asmbl_52724 scaffold_8 - retained_intron 3101869-3101985 asmbl_52723 // Retained and Spliced Intron # retained_intron 4194620-4194679 (orient:-) max_ev_support = 1 # spliced_intron 4194620-4194679 (orient:-) max_ev_support = 1 scaffold_8 - intron 4194620-4194679 asmbl_52751 scaffold_8 - retained_intron 4194620-4194679 asmbl_52752 // Retained and Spliced Intron # retained_intron 4194632-4194691 (orient:-) max_ev_support = 1 # spliced_intron 4194632-4194691 (orient:-) max_ev_support = 1 scaffold_8 - intron 4194632-4194691 asmbl_52750 scaffold_8 - retained_intron 4194632-4194691 asmbl_52752 // Exon Skipping and Retention # skipped_exon 4665045-4665532 (orient:-) max_ev_support = 1 # retained_exon 4665199-4665258 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 4665199-4665258 asmbl_52776 scaffold_8 - intron_skips_exon 4665045-4665532 asmbl_52777 // Retained and Spliced Intron # retained_intron 4784352-4784444 (orient:-) max_ev_support = 1 # spliced_intron 4784352-4784444 (orient:-) max_ev_support = 2 scaffold_8 - intron 4784352-4784444 asmbl_52788 scaffold_8 - retained_intron 4784352-4784444 asmbl_52789 // Retained and Spliced Intron # retained_intron 4859675-4859836 (orient:-) max_ev_support = 1 # spliced_intron 4859675-4859836 (orient:-) max_ev_support = 2 scaffold_8 - intron 4859675-4859836 asmbl_52803 scaffold_8 - retained_intron 4859675-4859836 asmbl_52804 // Retained and Spliced Intron # retained_intron 4859932-4860106 (orient:-) max_ev_support = 1 # spliced_intron 4859932-4860106 (orient:-) max_ev_support = 2 scaffold_8 - intron 4859932-4860106 asmbl_52803 scaffold_8 - retained_intron 4859932-4860106 asmbl_52804 // Retained and Spliced Intron # retained_intron 4860713-4860934 (orient:-) max_ev_support = 1 # spliced_intron 4860713-4860934 (orient:-) max_ev_support = 2 scaffold_8 - intron 4860713-4860934 asmbl_52803,asmbl_52804 scaffold_8 - retained_intron 4860713-4860934 asmbl_52805 // Retained and Spliced Intron # retained_intron 4860984-4861241 (orient:-) max_ev_support = 1 # spliced_intron 4860984-4861241 (orient:-) max_ev_support = 2 scaffold_8 - intron 4860984-4861241 asmbl_52803,asmbl_52804 scaffold_8 - retained_intron 4860984-4861241 asmbl_52805 // Retained and Spliced Intron # retained_intron 4960014-4960245 (orient:-) max_ev_support = 2 # spliced_intron 4960014-4960245 (orient:-) max_ev_support = 3 scaffold_8 - intron 4960014-4960245 asmbl_52809,asmbl_52810,asmbl_52813 scaffold_8 - retained_intron 4960014-4960245 asmbl_52811 // Retained and Spliced Intron # retained_intron 5216070-5216193 (orient:-) max_ev_support = 3 # spliced_intron 5216070-5216193 (orient:-) max_ev_support = 3 scaffold_8 - intron 5216070-5216193 asmbl_52819 scaffold_8 - retained_intron 5216070-5216193 asmbl_52818 // Retained and Spliced Intron # retained_intron 5314598-5314889 (orient:-) max_ev_support = 3 # spliced_intron 5314598-5314889 (orient:-) max_ev_support = 2 scaffold_8 - intron 5314598-5314889 asmbl_52823 scaffold_8 - retained_intron 5314598-5314889 asmbl_52822 // Retained and Spliced Intron # retained_intron 5554249-5554404 (orient:-) max_ev_support = 1 # spliced_intron 5554249-5554404 (orient:-) max_ev_support = 2 scaffold_8 - intron 5554249-5554404 asmbl_52827,asmbl_52829 scaffold_8 - retained_intron 5554249-5554404 asmbl_52828,asmbl_52830 // Retained and Spliced Intron # retained_intron 5976013-5976120 (orient:-) max_ev_support = 2 # spliced_intron 5976013-5976120 (orient:-) max_ev_support = 1 scaffold_8 - intron 5976013-5976120 asmbl_52847 scaffold_8 - retained_intron 5976013-5976120 asmbl_52846 // Retained and Spliced Intron # retained_intron 6018602-6018729 (orient:-) max_ev_support = 2 # spliced_intron 6018602-6018729 (orient:-) max_ev_support = 3 scaffold_8 - intron 6018602-6018729 asmbl_52849 scaffold_8 - retained_intron 6018602-6018729 asmbl_52850 // Retained and Spliced Intron # retained_intron 6018616-6018729 (orient:-) max_ev_support = 2 # spliced_intron 6018616-6018729 (orient:-) max_ev_support = 3 scaffold_8 - intron 6018616-6018729 asmbl_52848 scaffold_8 - retained_intron 6018616-6018729 asmbl_52850 // Retained and Spliced Intron # retained_intron 6159495-6159934 (orient:-) max_ev_support = 2 # spliced_intron 6159495-6159934 (orient:-) max_ev_support = 3 scaffold_8 - intron 6159495-6159934 asmbl_52853,asmbl_52858 scaffold_8 - retained_intron 6159495-6159934 asmbl_52854,asmbl_52857 // Retained and Spliced Intron # retained_intron 6160014-6160658 (orient:-) max_ev_support = 2 # spliced_intron 6160014-6160658 (orient:-) max_ev_support = 3 scaffold_8 - intron 6160014-6160658 asmbl_52853 scaffold_8 - retained_intron 6160014-6160658 asmbl_52854,asmbl_52857,asmbl_52858 // Retained and Spliced Intron # retained_intron 6160729-6160833 (orient:-) max_ev_support = 2 # spliced_intron 6160729-6160833 (orient:-) max_ev_support = 3 scaffold_8 - intron 6160729-6160833 asmbl_52853,asmbl_52857,asmbl_52858 scaffold_8 - retained_intron 6160729-6160833 asmbl_52854 // Retained and Spliced Intron # retained_intron 6161100-6161201 (orient:-) max_ev_support = 1 # spliced_intron 6161100-6161201 (orient:-) max_ev_support = 3 scaffold_8 - intron 6161100-6161201 asmbl_52853,asmbl_52854,asmbl_52857,asmbl_52858 scaffold_8 - retained_intron 6161100-6161201 asmbl_52859,asmbl_52860 // Retained and Spliced Intron # retained_intron 6161273-6161428 (orient:-) max_ev_support = 1 # spliced_intron 6161273-6161428 (orient:-) max_ev_support = 3 scaffold_8 - intron 6161273-6161428 asmbl_52853,asmbl_52854,asmbl_52857,asmbl_52858,asmbl_52859 scaffold_8 - retained_intron 6161273-6161428 asmbl_52860 // Retained and Spliced Intron # retained_intron 6317858-6317977 (orient:-) max_ev_support = 2 # spliced_intron 6317858-6317977 (orient:-) max_ev_support = 1 scaffold_8 - intron 6317858-6317977 asmbl_52870,asmbl_52871 scaffold_8 - retained_intron 6317858-6317977 asmbl_52869 // Retained and Spliced Intron # retained_intron 6321681-6321793 (orient:-) max_ev_support = 1 # spliced_intron 6321681-6321793 (orient:-) max_ev_support = 1 scaffold_8 - intron 6321681-6321793 asmbl_52871 scaffold_8 - retained_intron 6321681-6321793 asmbl_52870 // Exon Skipping and Retention # skipped_exon 6809136-6809444 (orient:-) max_ev_support = 2 # retained_exon 6809265-6809297 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 6809265-6809297 asmbl_52881 scaffold_8 - intron_skips_exon 6809136-6809444 asmbl_52880 // Exon Skipping and Retention # skipped_exon 7304586-7307284 (orient:-) max_ev_support = 2 # retained_exon 7306416-7306517 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 7306416-7306517 asmbl_52888 scaffold_8 - intron_skips_exon 7304586-7307284 asmbl_52887 // Retained and Spliced Intron # retained_intron 7446652-7446732 (orient:-) max_ev_support = 1 # spliced_intron 7446652-7446732 (orient:-) max_ev_support = 2 scaffold_8 - intron 7446652-7446732 asmbl_52896,asmbl_52897 scaffold_8 - retained_intron 7446652-7446732 asmbl_52898 // Retained and Spliced Intron # retained_intron 7481498-7481842 (orient:-) max_ev_support = 2 # spliced_intron 7481498-7481842 (orient:-) max_ev_support = 2 scaffold_8 - intron 7481498-7481842 asmbl_52903,asmbl_52905,asmbl_52907 scaffold_8 - retained_intron 7481498-7481842 asmbl_52904 // Retained and Spliced Intron # retained_intron 7482090-7482283 (orient:-) max_ev_support = 1 # spliced_intron 7482090-7482283 (orient:-) max_ev_support = 2 scaffold_8 - intron 7482090-7482283 asmbl_52903,asmbl_52907 scaffold_8 - retained_intron 7482090-7482283 asmbl_52905 // Retained and Spliced Intron # retained_intron 7483397-7483530 (orient:-) max_ev_support = 1 # spliced_intron 7483397-7483530 (orient:-) max_ev_support = 2 scaffold_8 - intron 7483397-7483530 asmbl_52903 scaffold_8 - retained_intron 7483397-7483530 asmbl_52905 // Retained and Spliced Intron # retained_intron 7483592-7484153 (orient:-) max_ev_support = 2 # spliced_intron 7483592-7484153 (orient:-) max_ev_support = 2 scaffold_8 - intron 7483592-7484153 asmbl_52903,asmbl_52905 scaffold_8 - retained_intron 7483592-7484153 asmbl_52906 // Retained and Spliced Intron # retained_intron 7484208-7484297 (orient:-) max_ev_support = 2 # spliced_intron 7484208-7484297 (orient:-) max_ev_support = 2 scaffold_8 - intron 7484208-7484297 asmbl_52903 scaffold_8 - retained_intron 7484208-7484297 asmbl_52906 // Retained and Spliced Intron # retained_intron 7482867-7483073 (orient:-) max_ev_support = 1 # spliced_intron 7482867-7483073 (orient:-) max_ev_support = 2 scaffold_8 - intron 7482867-7483073 asmbl_52903,asmbl_52905 scaffold_8 - retained_intron 7482867-7483073 asmbl_52907 // Retained and Spliced Intron # retained_intron 7804828-7805076 (orient:-) max_ev_support = 1 # spliced_intron 7804828-7805076 (orient:-) max_ev_support = 2 scaffold_8 - intron 7804828-7805076 asmbl_52915,asmbl_52916,asmbl_52919 scaffold_8 - retained_intron 7804828-7805076 asmbl_52917 // Retained and Spliced Intron # retained_intron 7805215-7805311 (orient:-) max_ev_support = 1 # spliced_intron 7805215-7805311 (orient:-) max_ev_support = 2 scaffold_8 - intron 7805215-7805311 asmbl_52915,asmbl_52916,asmbl_52919 scaffold_8 - retained_intron 7805215-7805311 asmbl_52917 // Retained and Spliced Intron # retained_intron 7804635-7804749 (orient:-) max_ev_support = 1 # spliced_intron 7804635-7804749 (orient:-) max_ev_support = 2 scaffold_8 - intron 7804635-7804749 asmbl_52915,asmbl_52916,asmbl_52917,asmbl_52919 scaffold_8 - retained_intron 7804635-7804749 asmbl_52918 // Retained and Spliced Intron # retained_intron 7984216-7984342 (orient:-) max_ev_support = 1 # spliced_intron 7984216-7984342 (orient:-) max_ev_support = 3 scaffold_8 - intron 7984216-7984342 asmbl_52929 scaffold_8 - retained_intron 7984216-7984342 asmbl_52930 // Retained and Spliced Intron # retained_intron 7985872-7986129 (orient:-) max_ev_support = 2 # spliced_intron 7985872-7986129 (orient:-) max_ev_support = 3 scaffold_8 - intron 7985872-7986129 asmbl_52931,asmbl_52933 scaffold_8 - retained_intron 7985872-7986129 asmbl_52932,asmbl_52934,asmbl_52935 // Retained and Spliced Intron # retained_intron 7986965-7987830 (orient:-) max_ev_support = 3 # spliced_intron 7986965-7987830 (orient:-) max_ev_support = 3 scaffold_8 - intron 7986965-7987830 asmbl_52931,asmbl_52934 scaffold_8 - retained_intron 7986965-7987830 asmbl_52932 // Retained and Spliced Intron # retained_intron 7986635-7986847 (orient:-) max_ev_support = 2 # spliced_intron 7986635-7986847 (orient:-) max_ev_support = 3 scaffold_8 - intron 7986635-7986847 asmbl_52931,asmbl_52932,asmbl_52934 scaffold_8 - retained_intron 7986635-7986847 asmbl_52933,asmbl_52935 // Retained and Spliced Intron # retained_intron 8554099-8555514 (orient:-) max_ev_support = 4 # spliced_intron 8554099-8555514 (orient:-) max_ev_support = 1 scaffold_8 - intron 8554099-8555514 asmbl_52953 scaffold_8 - retained_intron 8554099-8555514 asmbl_52950,asmbl_52951,asmbl_52952 // Retained and Spliced Intron # retained_intron 8555730-8555811 (orient:-) max_ev_support = 1 # spliced_intron 8555730-8555811 (orient:-) max_ev_support = 2 scaffold_8 - intron 8555730-8555811 asmbl_52950,asmbl_52951,asmbl_52952 scaffold_8 - retained_intron 8555730-8555811 asmbl_52953 // Retained and Spliced Intron # retained_intron 8607259-8607362 (orient:-) max_ev_support = 1 # spliced_intron 8607259-8607362 (orient:-) max_ev_support = 2 scaffold_8 - intron 8607259-8607362 asmbl_52958 scaffold_8 - retained_intron 8607259-8607362 asmbl_52960 // Retained and Spliced Intron # retained_intron 8901322-8902097 (orient:-) max_ev_support = 2 # spliced_intron 8901322-8902097 (orient:-) max_ev_support = 2 scaffold_8 - intron 8901322-8902097 asmbl_52974 scaffold_8 - retained_intron 8901322-8902097 asmbl_52973 // Retained and Spliced Intron # retained_intron 8901327-8902097 (orient:-) max_ev_support = 2 # spliced_intron 8901327-8902097 (orient:-) max_ev_support = 1 scaffold_8 - intron 8901327-8902097 asmbl_52975 scaffold_8 - retained_intron 8901327-8902097 asmbl_52973 // Retained and Spliced Intron # retained_intron 8970965-8971067 (orient:-) max_ev_support = 2 # spliced_intron 8970965-8971067 (orient:-) max_ev_support = 2 scaffold_8 - intron 8970965-8971067 asmbl_52976 scaffold_8 - retained_intron 8970965-8971067 asmbl_52977,asmbl_52980 // Retained and Spliced Intron # retained_intron 8970436-8970848 (orient:-) max_ev_support = 2 # spliced_intron 8970436-8970848 (orient:-) max_ev_support = 2 scaffold_8 - intron 8970436-8970848 asmbl_52976,asmbl_52977,asmbl_52980 scaffold_8 - retained_intron 8970436-8970848 asmbl_52978 // Retained and Spliced Intron # retained_intron 8969632-8969801 (orient:-) max_ev_support = 1 # spliced_intron 8969632-8969801 (orient:-) max_ev_support = 2 scaffold_8 - intron 8969632-8969801 asmbl_52976,asmbl_52977 scaffold_8 - retained_intron 8969632-8969801 asmbl_52980 // Retained and Spliced Intron # retained_intron 9104039-9104256 (orient:-) max_ev_support = 1 # spliced_intron 9104039-9104256 (orient:-) max_ev_support = 2 scaffold_8 - intron 9104039-9104256 asmbl_52991 scaffold_8 - retained_intron 9104039-9104256 asmbl_52992 // Retained and Spliced Intron # retained_intron 9112241-9112368 (orient:-) max_ev_support = 1 # spliced_intron 9112241-9112368 (orient:-) max_ev_support = 2 scaffold_8 - intron 9112241-9112368 asmbl_52993,asmbl_52995,asmbl_52996 scaffold_8 - retained_intron 9112241-9112368 asmbl_52994 // Retained and Spliced Intron # retained_intron 9112712-9112870 (orient:-) max_ev_support = 1 # spliced_intron 9112712-9112870 (orient:-) max_ev_support = 2 scaffold_8 - intron 9112712-9112870 asmbl_52993,asmbl_52994,asmbl_52996 scaffold_8 - retained_intron 9112712-9112870 asmbl_52995 // Retained and Spliced Intron # retained_intron 9122052-9122775 (orient:-) max_ev_support = 3 # spliced_intron 9122052-9122775 (orient:-) max_ev_support = 1 scaffold_8 - intron 9122052-9122775 asmbl_53001 scaffold_8 - retained_intron 9122052-9122775 asmbl_52999 // Retained and Spliced Intron # retained_intron 9122376-9122775 (orient:-) max_ev_support = 3 # spliced_intron 9122376-9122775 (orient:-) max_ev_support = 3 scaffold_8 - intron 9122376-9122775 asmbl_52998,asmbl_53000 scaffold_8 - retained_intron 9122376-9122775 asmbl_52999 // Exon Skipping and Retention # skipped_exon 9128050-9128801 (orient:-) max_ev_support = 1 # retained_exon 9128242-9128356 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9128242-9128356 asmbl_53003 scaffold_8 - intron_skips_exon 9128050-9128801 asmbl_53004,asmbl_53007,asmbl_53008 // Exon Skipping and Retention # skipped_exon 9128689-9129575 (orient:-) max_ev_support = 1 # retained_exon 9129085-9129248 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9129085-9129248 asmbl_53003 scaffold_8 - intron_skips_exon 9128689-9129575 asmbl_53005,asmbl_53006 // Exon Skipping and Retention # skipped_exon 9128357-9129084 (orient:-) max_ev_support = 1 # retained_exon 9128802-9128916 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 9128802-9128916 asmbl_53004,asmbl_53007,asmbl_53008 scaffold_8 - intron_skips_exon 9128357-9129084 asmbl_53003 // Exon Skipping and Retention # skipped_exon 9166127-9167025 (orient:-) max_ev_support = 1 # retained_exon 9166680-9166778 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 9166680-9166778 asmbl_53012,asmbl_53013 scaffold_8 - intron_skips_exon 9166127-9167025 asmbl_53014,asmbl_53015 // Exon Skipping and Retention # skipped_exon 9373145-9374067 (orient:-) max_ev_support = 1 # retained_exon 9373718-9373903 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 9373718-9373903 asmbl_53020,asmbl_53022,asmbl_53023,asmbl_53026 scaffold_8 - intron_skips_exon 9373145-9374067 asmbl_53021,asmbl_53027 // Retained and Spliced Intron # retained_intron 9467898-9467974 (orient:-) max_ev_support = 2 # spliced_intron 9467898-9467974 (orient:-) max_ev_support = 2 scaffold_8 - intron 9467898-9467974 asmbl_53030,asmbl_53032,asmbl_53033,asmbl_53034,asmbl_53035,asmbl_53036 scaffold_8 - retained_intron 9467898-9467974 asmbl_53031 // Retained and Spliced Intron # retained_intron 9465823-9465961 (orient:-) max_ev_support = 1 # spliced_intron 9465823-9465961 (orient:-) max_ev_support = 2 scaffold_8 - intron 9465823-9465961 asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035 scaffold_8 - retained_intron 9465823-9465961 asmbl_53032,asmbl_53036 // Retained and Spliced Intron # retained_intron 9466054-9466151 (orient:-) max_ev_support = 1 # spliced_intron 9466054-9466151 (orient:-) max_ev_support = 2 scaffold_8 - intron 9466054-9466151 asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035 scaffold_8 - retained_intron 9466054-9466151 asmbl_53032,asmbl_53036,asmbl_53037 // Retained and Spliced Intron # retained_intron 9466234-9466322 (orient:-) max_ev_support = 1 # spliced_intron 9466234-9466322 (orient:-) max_ev_support = 2 scaffold_8 - intron 9466234-9466322 asmbl_53030,asmbl_53033,asmbl_53034,asmbl_53035 scaffold_8 - retained_intron 9466234-9466322 asmbl_53032,asmbl_53036,asmbl_53037 // Retained and Spliced Intron # retained_intron 9467271-9467486 (orient:-) max_ev_support = 1 # spliced_intron 9467271-9467486 (orient:-) max_ev_support = 2 scaffold_8 - intron 9467271-9467486 asmbl_53030,asmbl_53031,asmbl_53032,asmbl_53035 scaffold_8 - retained_intron 9467271-9467486 asmbl_53033,asmbl_53034,asmbl_53036 // Retained and Spliced Intron # retained_intron 9468446-9468514 (orient:-) max_ev_support = 1 # spliced_intron 9468446-9468514 (orient:-) max_ev_support = 2 scaffold_8 - intron 9468446-9468514 asmbl_53030,asmbl_53032,asmbl_53034,asmbl_53036,asmbl_53038 scaffold_8 - retained_intron 9468446-9468514 asmbl_53035 // Retained and Spliced Intron # retained_intron 9872480-9872652 (orient:-) max_ev_support = 1 # spliced_intron 9872480-9872652 (orient:-) max_ev_support = 1 scaffold_8 - intron 9872480-9872652 asmbl_53056 scaffold_8 - retained_intron 9872480-9872652 asmbl_53057 // Retained and Spliced Intron # retained_intron 9872527-9872652 (orient:-) max_ev_support = 1 # spliced_intron 9872527-9872652 (orient:-) max_ev_support = 2 scaffold_8 - intron 9872527-9872652 asmbl_53055 scaffold_8 - retained_intron 9872527-9872652 asmbl_53057 // Retained and Spliced Intron # retained_intron 9904299-9904378 (orient:-) max_ev_support = 2 # spliced_intron 9904299-9904378 (orient:-) max_ev_support = 2 scaffold_8 - intron 9904299-9904378 asmbl_53060,asmbl_53064 scaffold_8 - retained_intron 9904299-9904378 asmbl_53061 // Retained and Spliced Intron # retained_intron 9903716-9903809 (orient:-) max_ev_support = 2 # spliced_intron 9903716-9903809 (orient:-) max_ev_support = 2 scaffold_8 - intron 9903716-9903809 asmbl_53060,asmbl_53061,asmbl_53064 scaffold_8 - retained_intron 9903716-9903809 asmbl_53062 // Exon Skipping and Retention # skipped_exon 9936478-9937030 (orient:-) max_ev_support = 1 # retained_exon 9936836-9936938 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 9936836-9936938 asmbl_53074,asmbl_53075 scaffold_8 - intron_skips_exon 9936478-9937030 asmbl_53077 // Retained and Spliced Intron # retained_intron 9937116-9937196 (orient:-) max_ev_support = 1 # spliced_intron 9937116-9937196 (orient:-) max_ev_support = 2 scaffold_8 - intron 9937116-9937196 asmbl_53074,asmbl_53077 scaffold_8 - retained_intron 9937116-9937196 asmbl_53075 // Exon Skipping and Retention # skipped_exon 10027223-10028131 (orient:-) max_ev_support = 1 # retained_exon 10027347-10027730 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 10027347-10027456,10027590-10027730 asmbl_53086 scaffold_8 - retained_exons 10027347-10027456,10027595-10027730 asmbl_53087 scaffold_8 - intron_skips_exon 10027223-10028131 asmbl_53088 // Retained and Spliced Intron # retained_intron 10040800-10041091 (orient:-) max_ev_support = 2 # spliced_intron 10040800-10041091 (orient:-) max_ev_support = 2 scaffold_8 - intron 10040800-10041091 asmbl_53089 scaffold_8 - retained_intron 10040800-10041091 asmbl_53091 // Retained and Spliced Intron # retained_intron 10040800-10041129 (orient:-) max_ev_support = 2 # spliced_intron 10040800-10041129 (orient:-) max_ev_support = 2 scaffold_8 - intron 10040800-10041129 asmbl_53090 scaffold_8 - retained_intron 10040800-10041129 asmbl_53091 // Exon Skipping and Retention # skipped_exon 10059557-10060449 (orient:-) max_ev_support = 2 # retained_exon 10059772-10059801 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 10059772-10059801 asmbl_53093 scaffold_8 - intron_skips_exon 10059557-10060449 asmbl_53094 // Retained and Spliced Intron # retained_intron 10059073-10059152 (orient:-) max_ev_support = 1 # spliced_intron 10059073-10059152 (orient:-) max_ev_support = 2 scaffold_8 - intron 10059073-10059152 asmbl_53093,asmbl_53094 scaffold_8 - retained_intron 10059073-10059152 asmbl_53097 // Retained and Spliced Intron # retained_intron 10059557-10059771 (orient:-) max_ev_support = 1 # spliced_intron 10059557-10059771 (orient:-) max_ev_support = 2 scaffold_8 - intron 10059557-10059771 asmbl_53093 scaffold_8 - retained_intron 10059557-10059771 asmbl_53097 // Exon Skipping and Retention # skipped_exon 10585517-10587677 (orient:-) max_ev_support = 2 # retained_exon 10586224-10586334 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 10586224-10586334 asmbl_53110 scaffold_8 - intron_skips_exon 10585517-10587677 asmbl_53109 // Retained and Spliced Intron # retained_intron 10601114-10601193 (orient:-) max_ev_support = 2 # spliced_intron 10601114-10601193 (orient:-) max_ev_support = 2 scaffold_8 - intron 10601114-10601193 asmbl_53111 scaffold_8 - retained_intron 10601114-10601193 asmbl_53112 // Exon Skipping and Retention # skipped_exon 11101511-11102291 (orient:-) max_ev_support = 2 # retained_exon 11101710-11101823 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11101710-11101823 asmbl_53129,asmbl_53131 scaffold_8 - intron_skips_exon 11101511-11102291 asmbl_53130 // Exon Skipping and Retention # skipped_exon 11269758-11270824 (orient:-) max_ev_support = 2 # retained_exon 11270088-11270215 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11270088-11270215 asmbl_53137 scaffold_8 - intron_skips_exon 11269758-11270824 asmbl_53138 // Retained and Spliced Intron # retained_intron 11270565-11270676 (orient:-) max_ev_support = 2 # spliced_intron 11270565-11270676 (orient:-) max_ev_support = 1 scaffold_8 - intron 11270565-11270676 asmbl_53139 scaffold_8 - retained_intron 11270565-11270676 asmbl_53137 // Retained and Spliced Intron # retained_intron 11277835-11278003 (orient:-) max_ev_support = 3 # spliced_intron 11277835-11278003 (orient:-) max_ev_support = 2 scaffold_8 - intron 11277835-11278003 asmbl_53142,asmbl_53143,asmbl_53144,asmbl_53145 scaffold_8 - retained_intron 11277835-11278003 asmbl_53141 // Retained and Spliced Intron # retained_intron 11278090-11278313 (orient:-) max_ev_support = 3 # spliced_intron 11278090-11278313 (orient:-) max_ev_support = 2 scaffold_8 - intron 11278090-11278313 asmbl_53142,asmbl_53143,asmbl_53144,asmbl_53145 scaffold_8 - retained_intron 11278090-11278313 asmbl_53141 // Retained and Spliced Intron # retained_intron 11278487-11279101 (orient:-) max_ev_support = 1 # spliced_intron 11278487-11279101 (orient:-) max_ev_support = 2 scaffold_8 - intron 11278487-11279101 asmbl_53142,asmbl_53143 scaffold_8 - retained_intron 11278487-11279101 asmbl_53141,asmbl_53144,asmbl_53145 // Retained and Spliced Intron # retained_intron 11279257-11280686 (orient:-) max_ev_support = 2 # spliced_intron 11279257-11280686 (orient:-) max_ev_support = 2 scaffold_8 - intron 11279257-11280686 asmbl_53141,asmbl_53142,asmbl_53145 scaffold_8 - retained_intron 11279257-11280686 asmbl_53143,asmbl_53144 // Exon Skipping and Retention # skipped_exon 11741924-11743764 (orient:-) max_ev_support = 2 # retained_exon 11742081-11742171 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 11742081-11742171 asmbl_53157 scaffold_8 - intron_skips_exon 11741924-11743764 asmbl_53158 // Retained and Spliced Intron # retained_intron 11760968-11761396 (orient:-) max_ev_support = 2 # spliced_intron 11760968-11761396 (orient:-) max_ev_support = 1 scaffold_8 - intron 11760968-11761396 asmbl_53162 scaffold_8 - retained_intron 11760968-11761396 asmbl_53161 // Retained and Spliced Intron # retained_intron 11760968-11761438 (orient:-) max_ev_support = 2 # spliced_intron 11760968-11761438 (orient:-) max_ev_support = 1 scaffold_8 - intron 11760968-11761438 asmbl_53163 scaffold_8 - retained_intron 11760968-11761438 asmbl_53161 // Retained and Spliced Intron # retained_intron 11857014-11857183 (orient:-) max_ev_support = 1 # spliced_intron 11857014-11857183 (orient:-) max_ev_support = 2 scaffold_8 - intron 11857014-11857183 asmbl_53169 scaffold_8 - retained_intron 11857014-11857183 asmbl_53170 // Retained and Spliced Intron # retained_intron 12124410-12124600 (orient:-) max_ev_support = 1 # spliced_intron 12124410-12124600 (orient:-) max_ev_support = 2 scaffold_8 - intron 12124410-12124600 asmbl_53182 scaffold_8 - retained_intron 12124410-12124600 asmbl_53183 // Retained and Spliced Intron # retained_intron 12193942-12194153 (orient:-) max_ev_support = 1 # spliced_intron 12193942-12194153 (orient:-) max_ev_support = 2 scaffold_8 - intron 12193942-12194153 asmbl_53185 scaffold_8 - retained_intron 12193942-12194153 asmbl_53184 // Retained and Spliced Intron # retained_intron 12194719-12195488 (orient:-) max_ev_support = 3 # spliced_intron 12194719-12195488 (orient:-) max_ev_support = 2 scaffold_8 - intron 12194719-12195488 asmbl_53185 scaffold_8 - retained_intron 12194719-12195488 asmbl_53184 // Exon Skipping and Retention # skipped_exon 12320740-12321136 (orient:-) max_ev_support = 1 # retained_exon 12320882-12321005 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12320882-12321005 asmbl_53187,asmbl_53193 scaffold_8 - intron_skips_exon 12320740-12321136 asmbl_53192,asmbl_53194 // Exon Skipping and Retention # skipped_exon 12326039-12326530 (orient:-) max_ev_support = 1 # retained_exon 12326315-12326390 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12326315-12326390 asmbl_53187,asmbl_53194,asmbl_53195 scaffold_8 - intron_skips_exon 12326039-12326530 asmbl_53193,asmbl_53196 // Exon Skipping and Retention # skipped_exon 12625677-12626425 (orient:-) max_ev_support = 1 # retained_exon 12626029-12626108 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12626029-12626108 asmbl_53213,asmbl_53214 scaffold_8 - intron_skips_exon 12625677-12626425 asmbl_53217 // Retained and Spliced Intron # retained_intron 12625487-12625600 (orient:-) max_ev_support = 1 # spliced_intron 12625487-12625600 (orient:-) max_ev_support = 2 scaffold_8 - intron 12625487-12625600 asmbl_53213,asmbl_53215,asmbl_53217 scaffold_8 - retained_intron 12625487-12625600 asmbl_53214,asmbl_53216 // Retained and Spliced Intron # retained_intron 12625677-12626028 (orient:-) max_ev_support = 1 # spliced_intron 12625677-12626028 (orient:-) max_ev_support = 2 scaffold_8 - intron 12625677-12626028 asmbl_53213,asmbl_53214 scaffold_8 - retained_intron 12625677-12626028 asmbl_53215,asmbl_53216 // Retained and Spliced Intron # retained_intron 12625677-12626425 (orient:-) max_ev_support = 1 # spliced_intron 12625677-12626425 (orient:-) max_ev_support = 1 scaffold_8 - intron 12625677-12626425 asmbl_53217 scaffold_8 - retained_intron 12625677-12626425 asmbl_53215,asmbl_53216 // Retained and Spliced Intron # retained_intron 12626109-12626425 (orient:-) max_ev_support = 1 # spliced_intron 12626109-12626425 (orient:-) max_ev_support = 2 scaffold_8 - intron 12626109-12626425 asmbl_53213,asmbl_53214 scaffold_8 - retained_intron 12626109-12626425 asmbl_53215,asmbl_53216 // Exon Skipping and Retention # skipped_exon 12728585-12728827 (orient:-) max_ev_support = 1 # retained_exon 12728677-12728723 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12728677-12728723 asmbl_53226 scaffold_8 - intron_skips_exon 12728585-12728827 asmbl_53227,asmbl_53228 // Retained and Spliced Intron # retained_intron 12728267-12728451 (orient:-) max_ev_support = 1 # spliced_intron 12728267-12728451 (orient:-) max_ev_support = 2 scaffold_8 - intron 12728267-12728451 asmbl_53226,asmbl_53228 scaffold_8 - retained_intron 12728267-12728451 asmbl_53227 // Retained and Spliced Intron # retained_intron 12807249-12807688 (orient:-) max_ev_support = 2 # spliced_intron 12807249-12807688 (orient:-) max_ev_support = 1 scaffold_8 - intron 12807249-12807688 asmbl_53239 scaffold_8 - retained_intron 12807249-12807688 asmbl_53237,asmbl_53238 // Exon Skipping and Retention # skipped_exon 12810394-12810817 (orient:-) max_ev_support = 2 # retained_exon 12810505-12810554 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 12810505-12810554 asmbl_53238,asmbl_53239 scaffold_8 - intron_skips_exon 12810394-12810817 asmbl_53237 // Exon Skipping and Retention # skipped_exon 12920184-12920588 (orient:-) max_ev_support = 1 # retained_exon 12920319-12920440 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 12920319-12920440 asmbl_53250,asmbl_53251,asmbl_53252,asmbl_53257,asmbl_53258 scaffold_8 - intron_skips_exon 12920184-12920588 asmbl_53262 // Retained and Spliced Intron # retained_intron 13132405-13133093 (orient:-) max_ev_support = 2 # spliced_intron 13132405-13133093 (orient:-) max_ev_support = 1 scaffold_8 - intron 13132405-13133093 asmbl_53273 scaffold_8 - retained_intron 13132405-13133093 asmbl_53271,asmbl_53272 // Retained and Spliced Intron # retained_intron 13132405-13133848 (orient:-) max_ev_support = 2 # spliced_intron 13132405-13133848 (orient:-) max_ev_support = 1 scaffold_8 - intron 13132405-13133848 asmbl_53274 scaffold_8 - retained_intron 13132405-13133848 asmbl_53271,asmbl_53272 // Retained and Spliced Intron # retained_intron 13133136-13133848 (orient:-) max_ev_support = 2 # spliced_intron 13133136-13133848 (orient:-) max_ev_support = 1 scaffold_8 - intron 13133136-13133848 asmbl_53273 scaffold_8 - retained_intron 13133136-13133848 asmbl_53271,asmbl_53272 // Retained and Spliced Intron # retained_intron 13138179-13138853 (orient:-) max_ev_support = 1 # spliced_intron 13138179-13138853 (orient:-) max_ev_support = 2 scaffold_8 - intron 13138179-13138853 asmbl_53270,asmbl_53271,asmbl_53273,asmbl_53274 scaffold_8 - retained_intron 13138179-13138853 asmbl_53272 // Exon Skipping and Retention # skipped_exon 13132405-13133848 (orient:-) max_ev_support = 1 # retained_exon 13133094-13133135 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 13133094-13133135 asmbl_53273 scaffold_8 - intron_skips_exon 13132405-13133848 asmbl_53274 // Exon Skipping and Retention # skipped_exon 13143912-13145374 (orient:-) max_ev_support = 1 # retained_exon 13144679-13144729 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 13144679-13144729 asmbl_53280,asmbl_53283 scaffold_8 - intron_skips_exon 13143912-13145374 asmbl_53281,asmbl_53282 // Retained and Spliced Intron # retained_intron 14134530-14135737 (orient:-) max_ev_support = 3 # spliced_intron 14134530-14135737 (orient:-) max_ev_support = 1 scaffold_8 - intron 14134530-14135737 asmbl_53302 scaffold_8 - retained_intron 14134530-14135737 asmbl_53300,asmbl_53301 // Retained and Spliced Intron # retained_intron 14134155-14134355 (orient:-) max_ev_support = 1 # spliced_intron 14134155-14134355 (orient:-) max_ev_support = 1 scaffold_8 - intron 14134155-14134355 asmbl_53300,asmbl_53302 scaffold_8 - retained_intron 14134155-14134355 asmbl_53301 // Exon Skipping and Retention # skipped_exon 14212489-14213428 (orient:-) max_ev_support = 1 # retained_exon 14213087-14213163 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 14213087-14213163 asmbl_53307 scaffold_8 - intron_skips_exon 14212489-14213428 asmbl_53308 // Exon Skipping and Retention # skipped_exon 16040106-16040586 (orient:-) max_ev_support = 2 # retained_exon 16040335-16040456 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16040335-16040456 asmbl_53355 scaffold_8 - intron_skips_exon 16040106-16040586 asmbl_53356 // Retained and Spliced Intron # retained_intron 16040457-16040586 (orient:-) max_ev_support = 1 # spliced_intron 16040457-16040586 (orient:-) max_ev_support = 2 scaffold_8 - intron 16040457-16040586 asmbl_53355 scaffold_8 - retained_intron 16040457-16040586 asmbl_53357 // Retained and Spliced Intron # retained_intron 16099356-16100916 (orient:-) max_ev_support = 2 # spliced_intron 16099356-16100916 (orient:-) max_ev_support = 1 scaffold_8 - intron 16099356-16100916 asmbl_53367 scaffold_8 - retained_intron 16099356-16100916 asmbl_53366 // Retained and Spliced Intron # retained_intron 16142261-16142410 (orient:-) max_ev_support = 1 # spliced_intron 16142261-16142410 (orient:-) max_ev_support = 1 scaffold_8 - intron 16142261-16142410 asmbl_53372 scaffold_8 - retained_intron 16142261-16142410 asmbl_53370 // Retained and Spliced Intron # retained_intron 16141006-16141091 (orient:-) max_ev_support = 1 # spliced_intron 16141006-16141091 (orient:-) max_ev_support = 2 scaffold_8 - intron 16141006-16141091 asmbl_53369,asmbl_53370,asmbl_53372 scaffold_8 - retained_intron 16141006-16141091 asmbl_53371 // Retained and Spliced Intron # retained_intron 16274198-16274331 (orient:-) max_ev_support = 3 # spliced_intron 16274198-16274331 (orient:-) max_ev_support = 2 scaffold_8 - intron 16274198-16274331 asmbl_53385,asmbl_53386,asmbl_53387 scaffold_8 - retained_intron 16274198-16274331 asmbl_53384 // Retained and Spliced Intron # retained_intron 16278978-16279098 (orient:-) max_ev_support = 2 # spliced_intron 16278978-16279098 (orient:-) max_ev_support = 2 scaffold_8 - intron 16278978-16279098 asmbl_53386 scaffold_8 - retained_intron 16278978-16279098 asmbl_53385,asmbl_53387 // Exon Skipping and Retention # skipped_exon 16397415-16398401 (orient:-) max_ev_support = 1 # retained_exon 16397528-16397566 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16397528-16397566 asmbl_53389 scaffold_8 - intron_skips_exon 16397415-16398401 asmbl_53394 // Exon Skipping and Retention # skipped_exon 16401127-16403044 (orient:-) max_ev_support = 1 # retained_exon 16401258-16401383 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16401258-16401383 asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53397,asmbl_53398 scaffold_8 - intron_skips_exon 16401127-16403044 asmbl_53396,asmbl_53399 // Retained and Spliced Intron # retained_intron 16397415-16397527 (orient:-) max_ev_support = 2 # spliced_intron 16397415-16397527 (orient:-) max_ev_support = 2 scaffold_8 - intron 16397415-16397527 asmbl_53389 scaffold_8 - retained_intron 16397415-16397527 asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399 // Retained and Spliced Intron # retained_intron 16397415-16398401 (orient:-) max_ev_support = 2 # spliced_intron 16397415-16398401 (orient:-) max_ev_support = 1 scaffold_8 - intron 16397415-16398401 asmbl_53394 scaffold_8 - retained_intron 16397415-16398401 asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399 // Retained and Spliced Intron # retained_intron 16397567-16398401 (orient:-) max_ev_support = 2 # spliced_intron 16397567-16398401 (orient:-) max_ev_support = 2 scaffold_8 - intron 16397567-16398401 asmbl_53389 scaffold_8 - retained_intron 16397567-16398401 asmbl_53390,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399 // Retained and Spliced Intron # retained_intron 16396748-16397082 (orient:-) max_ev_support = 2 # spliced_intron 16396748-16397082 (orient:-) max_ev_support = 2 scaffold_8 - intron 16396748-16397082 asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53396,asmbl_53397,asmbl_53398,asmbl_53399 scaffold_8 - retained_intron 16396748-16397082 asmbl_53391 // Retained and Spliced Intron # retained_intron 16392727-16393145 (orient:-) max_ev_support = 1 # spliced_intron 16392727-16393145 (orient:-) max_ev_support = 2 scaffold_8 - intron 16392727-16393145 asmbl_53389,asmbl_53390,asmbl_53391,asmbl_53394,asmbl_53397,asmbl_53399 scaffold_8 - retained_intron 16392727-16393145 asmbl_53395,asmbl_53396,asmbl_53398 // Retained and Spliced Intron # retained_intron 16398423-16398835 (orient:-) max_ev_support = 1 # spliced_intron 16398423-16398835 (orient:-) max_ev_support = 2 scaffold_8 - intron 16398423-16398835 asmbl_53389,asmbl_53390,asmbl_53394,asmbl_53395,asmbl_53396,asmbl_53399 scaffold_8 - retained_intron 16398423-16398835 asmbl_53397,asmbl_53398 // Retained and Spliced Intron # retained_intron 16503765-16503928 (orient:-) max_ev_support = 3 # spliced_intron 16503765-16503928 (orient:-) max_ev_support = 2 scaffold_8 - intron 16503765-16503928 asmbl_53409,asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53430 scaffold_8 - retained_intron 16503765-16503928 asmbl_53406,asmbl_53410,asmbl_53415 // Exon Skipping and Retention # skipped_exon 16502745-16503680 (orient:-) max_ev_support = 3 # retained_exon 16503359-16503451 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 16503359-16503451 asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428 scaffold_8 - intron_skips_exon 16502745-16503680 asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53421,asmbl_53422,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430 // Retained and Spliced Intron # retained_intron 16502745-16503358 (orient:-) max_ev_support = 2 # spliced_intron 16502745-16503358 (orient:-) max_ev_support = 2 scaffold_8 - intron 16502745-16503358 asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428 scaffold_8 - retained_intron 16502745-16503358 asmbl_53410 // Retained and Spliced Intron # retained_intron 16502745-16503680 (orient:-) max_ev_support = 2 # spliced_intron 16502745-16503680 (orient:-) max_ev_support = 3 scaffold_8 - intron 16502745-16503680 asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53421,asmbl_53422,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430 scaffold_8 - retained_intron 16502745-16503680 asmbl_53410 // Retained and Spliced Intron # retained_intron 16503452-16503680 (orient:-) max_ev_support = 2 # spliced_intron 16503452-16503680 (orient:-) max_ev_support = 2 scaffold_8 - intron 16503452-16503680 asmbl_53409,asmbl_53420,asmbl_53423,asmbl_53428 scaffold_8 - retained_intron 16503452-16503680 asmbl_53410 // Retained and Spliced Intron # retained_intron 16505056-16505853 (orient:-) max_ev_support = 2 # spliced_intron 16505056-16505853 (orient:-) max_ev_support = 2 scaffold_8 - intron 16505056-16505853 asmbl_53414,asmbl_53416,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430 scaffold_8 - retained_intron 16505056-16505853 asmbl_53411,asmbl_53413 // Retained and Spliced Intron # retained_intron 16501765-16501850 (orient:-) max_ev_support = 2 # spliced_intron 16501765-16501850 (orient:-) max_ev_support = 3 scaffold_8 - intron 16501765-16501850 asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53428,asmbl_53429,asmbl_53430 scaffold_8 - retained_intron 16501765-16501850 asmbl_53412,asmbl_53418 // Retained and Spliced Intron # retained_intron 16501928-16502016 (orient:-) max_ev_support = 2 # spliced_intron 16501928-16502016 (orient:-) max_ev_support = 3 scaffold_8 - intron 16501928-16502016 asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53420,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53425,asmbl_53427,asmbl_53428,asmbl_53429,asmbl_53430 scaffold_8 - retained_intron 16501928-16502016 asmbl_53412 // Retained and Spliced Intron # retained_intron 16499747-16501670 (orient:-) max_ev_support = 1 # spliced_intron 16499747-16501670 (orient:-) max_ev_support = 3 scaffold_8 - intron 16499747-16501670 asmbl_53406,asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53415,asmbl_53416,asmbl_53421,asmbl_53422,asmbl_53423,asmbl_53424,asmbl_53427,asmbl_53428,asmbl_53430 scaffold_8 - retained_intron 16499747-16501670 asmbl_53419,asmbl_53420,asmbl_53425,asmbl_53429 // Retained and Spliced Intron # retained_intron 16499324-16499685 (orient:-) max_ev_support = 1 # spliced_intron 16499324-16499685 (orient:-) max_ev_support = 1 scaffold_8 - intron 16499324-16499685 asmbl_53428 scaffold_8 - retained_intron 16499324-16499685 asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429 // Retained and Spliced Intron # retained_intron 16499327-16499685 (orient:-) max_ev_support = 1 # spliced_intron 16499327-16499685 (orient:-) max_ev_support = 3 scaffold_8 - intron 16499327-16499685 asmbl_53406,asmbl_53411,asmbl_53414,asmbl_53424 scaffold_8 - retained_intron 16499327-16499685 asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429 // Retained and Spliced Intron # retained_intron 16499427-16499685 (orient:-) max_ev_support = 1 # spliced_intron 16499427-16499685 (orient:-) max_ev_support = 2 scaffold_8 - intron 16499427-16499685 asmbl_53413,asmbl_53415,asmbl_53416,asmbl_53422,asmbl_53430 scaffold_8 - retained_intron 16499427-16499685 asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429 // Exon Skipping and Retention # skipped_exon 16503765-16504947 (orient:-) max_ev_support = 2 # retained_exon 16503929-16504096 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 16503929-16504096 asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53430 scaffold_8 - intron_skips_exon 16503765-16504947 asmbl_53411,asmbl_53413,asmbl_53414,asmbl_53416,asmbl_53418,asmbl_53419,asmbl_53422,asmbl_53424,asmbl_53427,asmbl_53428,asmbl_53429 // Exon Skipping and Retention # skipped_exon 16505056-16507019 (orient:-) max_ev_support = 1 # retained_exon 16505854-16506689 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 16505854-16506261,16506570-16506689 asmbl_53420,asmbl_53421,asmbl_53423,asmbl_53425,asmbl_53427,asmbl_53429,asmbl_53430 scaffold_8 - intron_skips_exon 16505056-16507019 asmbl_53418,asmbl_53422,asmbl_53424,asmbl_53428 // Retained and Spliced Intron # retained_intron 16539028-16539118 (orient:-) max_ev_support = 1 # spliced_intron 16539028-16539118 (orient:-) max_ev_support = 2 scaffold_8 - intron 16539028-16539118 asmbl_53433,asmbl_53437 scaffold_8 - retained_intron 16539028-16539118 asmbl_53436 // Retained and Spliced Intron # retained_intron 16576119-16576384 (orient:-) max_ev_support = 1 # spliced_intron 16576119-16576384 (orient:-) max_ev_support = 2 scaffold_8 - intron 16576119-16576384 asmbl_53438,asmbl_53439 scaffold_8 - retained_intron 16576119-16576384 asmbl_53440 // Retained and Spliced Intron # retained_intron 16619457-16619609 (orient:-) max_ev_support = 1 # spliced_intron 16619457-16619609 (orient:-) max_ev_support = 2 scaffold_8 - intron 16619457-16619609 asmbl_53441 scaffold_8 - retained_intron 16619457-16619609 asmbl_53442 // Retained and Spliced Intron # retained_intron 17284211-17284287 (orient:-) max_ev_support = 1 # spliced_intron 17284211-17284287 (orient:-) max_ev_support = 2 scaffold_8 - intron 17284211-17284287 asmbl_53447 scaffold_8 - retained_intron 17284211-17284287 asmbl_53448 // Retained and Spliced Intron # retained_intron 17284349-17284435 (orient:-) max_ev_support = 1 # spliced_intron 17284349-17284435 (orient:-) max_ev_support = 2 scaffold_8 - intron 17284349-17284435 asmbl_53447 scaffold_8 - retained_intron 17284349-17284435 asmbl_53448 // Exon Skipping and Retention # skipped_exon 17311618-17313674 (orient:-) max_ev_support = 2 # retained_exon 17313204-17313263 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17313204-17313263 asmbl_53453 scaffold_8 - intron_skips_exon 17311618-17313674 asmbl_53452 // Exon Skipping and Retention # skipped_exon 17463643-17464507 (orient:-) max_ev_support = 2 # retained_exon 17464116-17464202 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17464116-17464202 asmbl_53472 scaffold_8 - intron_skips_exon 17463643-17464507 asmbl_53471 // Exon Skipping and Retention # skipped_exon 17651645-17653997 (orient:-) max_ev_support = 2 # retained_exon 17651896-17651979 (orient:-) max_ev_support = 2 scaffold_8 - retained_exons 17651896-17651979 asmbl_53485 scaffold_8 - intron_skips_exon 17651645-17653997 asmbl_53486 // Exon Skipping and Retention # skipped_exon 17974030-17974808 (orient:-) max_ev_support = 1 # retained_exon 17974550-17974661 (orient:-) max_ev_support = 3 scaffold_8 - retained_exons 17974550-17974661 asmbl_53506 scaffold_8 - intron_skips_exon 17974030-17974808 asmbl_53508 // Exon Skipping and Retention # skipped_exon 17972241-17974549 (orient:-) max_ev_support = 3 # retained_exon 17973918-17974029 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 17973918-17974029 asmbl_53508 scaffold_8 - intron_skips_exon 17972241-17974549 asmbl_53506 // Retained and Spliced Intron # retained_intron 18084290-18084429 (orient:-) max_ev_support = 2 # spliced_intron 18084290-18084429 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084290-18084429 asmbl_53511,asmbl_53513,asmbl_53514 scaffold_8 - retained_intron 18084290-18084429 asmbl_53512,asmbl_53515,asmbl_53516 // Retained and Spliced Intron # retained_intron 18084510-18084591 (orient:-) max_ev_support = 2 # spliced_intron 18084510-18084591 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084510-18084591 asmbl_53511,asmbl_53513,asmbl_53514,asmbl_53516 scaffold_8 - retained_intron 18084510-18084591 asmbl_53512,asmbl_53515 // Retained and Spliced Intron # retained_intron 18084680-18084897 (orient:-) max_ev_support = 2 # spliced_intron 18084680-18084897 (orient:-) max_ev_support = 3 scaffold_8 - intron 18084680-18084897 asmbl_53511,asmbl_53513,asmbl_53514,asmbl_53516 scaffold_8 - retained_intron 18084680-18084897 asmbl_53512,asmbl_53515 // Retained and Spliced Intron # retained_intron 18162712-18162884 (orient:-) max_ev_support = 3 # spliced_intron 18162712-18162884 (orient:-) max_ev_support = 3 scaffold_8 - intron 18162712-18162884 asmbl_53521,asmbl_53523,asmbl_53524,asmbl_53526 scaffold_8 - retained_intron 18162712-18162884 asmbl_53522 // Retained and Spliced Intron # retained_intron 18161229-18161474 (orient:-) max_ev_support = 2 # spliced_intron 18161229-18161474 (orient:-) max_ev_support = 3 scaffold_8 - intron 18161229-18161474 asmbl_53521,asmbl_53522,asmbl_53525,asmbl_53526 scaffold_8 - retained_intron 18161229-18161474 asmbl_53523,asmbl_53524 // Retained and Spliced Intron # retained_intron 18163021-18163268 (orient:-) max_ev_support = 1 # spliced_intron 18163021-18163268 (orient:-) max_ev_support = 3 scaffold_8 - intron 18163021-18163268 asmbl_53521,asmbl_53522,asmbl_53523,asmbl_53524 scaffold_8 - retained_intron 18163021-18163268 asmbl_53526 // Retained and Spliced Intron # retained_intron 18248240-18248534 (orient:-) max_ev_support = 1 # spliced_intron 18248240-18248534 (orient:-) max_ev_support = 1 scaffold_8 - intron 18248240-18248534 asmbl_53540 scaffold_8 - retained_intron 18248240-18248534 asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538 // Retained and Spliced Intron # retained_intron 18248240-18248543 (orient:-) max_ev_support = 1 # spliced_intron 18248240-18248543 (orient:-) max_ev_support = 2 scaffold_8 - intron 18248240-18248543 asmbl_53534,asmbl_53535,asmbl_53539 scaffold_8 - retained_intron 18248240-18248543 asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538 // Retained and Spliced Intron # retained_intron 18248240-18248548 (orient:-) max_ev_support = 1 # spliced_intron 18248240-18248548 (orient:-) max_ev_support = 1 scaffold_8 - intron 18248240-18248548 asmbl_53541,asmbl_53542 scaffold_8 - retained_intron 18248240-18248548 asmbl_53533,asmbl_53536,asmbl_53537,asmbl_53538 // Retained and Spliced Intron # retained_intron 18249988-18250262 (orient:-) max_ev_support = 2 # spliced_intron 18249988-18250262 (orient:-) max_ev_support = 1 scaffold_8 - intron 18249988-18250262 asmbl_53538,asmbl_53539,asmbl_53542 scaffold_8 - retained_intron 18249988-18250262 asmbl_53534,asmbl_53536,asmbl_53541 // Exon Skipping and Retention # skipped_exon 18249797-18250058 (orient:-) max_ev_support = 1 # retained_exon 18249902-18249987 (orient:-) max_ev_support = 1 scaffold_8 - retained_exons 18249902-18249987 asmbl_53538,asmbl_53539,asmbl_53542 scaffold_8 - intron_skips_exon 18249797-18250058 asmbl_53533,asmbl_53535,asmbl_53537,asmbl_53540 // Retained and Spliced Intron # retained_intron 18442849-18443312 (orient:-) max_ev_support = 1 # spliced_intron 18442849-18443312 (orient:-) max_ev_support = 2 scaffold_8 - intron 18442849-18443312 asmbl_53554 scaffold_8 - retained_intron 18442849-18443312 asmbl_53555 // Retained and Spliced Intron # retained_intron 18573669-18573909 (orient:-) max_ev_support = 3 # spliced_intron 18573669-18573909 (orient:-) max_ev_support = 3 scaffold_8 - intron 18573669-18573909 asmbl_53569,asmbl_53570 scaffold_8 - retained_intron 18573669-18573909 asmbl_53568 // Retained and Spliced Intron # retained_intron 119321-119545 (orient:+) max_ev_support = 1 # spliced_intron 119321-119545 (orient:+) max_ev_support = 2 scaffold_9 + intron 119321-119545 asmbl_53733 scaffold_9 + retained_intron 119321-119545 asmbl_53735 // Retained and Spliced Intron # retained_intron 119370-119545 (orient:+) max_ev_support = 1 # spliced_intron 119370-119545 (orient:+) max_ev_support = 1 scaffold_9 + intron 119370-119545 asmbl_53734 scaffold_9 + retained_intron 119370-119545 asmbl_53735 // Exon Skipping and Retention # skipped_exon 361448-362689 (orient:+) max_ev_support = 2 # retained_exon 361629-362292 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 361629-361760,362138-362292 asmbl_53738 scaffold_9 + intron_skips_exon 361448-362689 asmbl_53737 // Retained and Spliced Intron # retained_intron 571057-571140 (orient:+) max_ev_support = 1 # spliced_intron 571057-571140 (orient:+) max_ev_support = 1 scaffold_9 + intron 571057-571140 asmbl_53753 scaffold_9 + retained_intron 571057-571140 asmbl_53751,asmbl_53752 // Retained and Spliced Intron # retained_intron 571057-571248 (orient:+) max_ev_support = 1 # spliced_intron 571057-571248 (orient:+) max_ev_support = 1 scaffold_9 + intron 571057-571248 asmbl_53750 scaffold_9 + retained_intron 571057-571248 asmbl_53751 // Retained and Spliced Intron # retained_intron 571217-571264 (orient:+) max_ev_support = 1 # spliced_intron 571217-571264 (orient:+) max_ev_support = 1 scaffold_9 + intron 571217-571264 asmbl_53752 scaffold_9 + retained_intron 571217-571264 asmbl_53751 // Retained and Spliced Intron # retained_intron 634983-635016 (orient:+) max_ev_support = 2 # spliced_intron 634983-635016 (orient:+) max_ev_support = 1 scaffold_9 + intron 634983-635016 asmbl_53757 scaffold_9 + retained_intron 634983-635016 asmbl_53756 // Retained and Spliced Intron # retained_intron 637042-637113 (orient:+) max_ev_support = 2 # spliced_intron 637042-637113 (orient:+) max_ev_support = 1 scaffold_9 + intron 637042-637113 asmbl_53759 scaffold_9 + retained_intron 637042-637113 asmbl_53758 // Exon Skipping and Retention # skipped_exon 644164-645342 (orient:+) max_ev_support = 1 # retained_exon 645134-645220 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220 asmbl_53761 scaffold_9 + intron_skips_exon 644164-645342 asmbl_53763 // Exon Skipping and Retention # skipped_exon 644461-645690 (orient:+) max_ev_support = 1 # retained_exon 645134-645512 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220,645343-645512 asmbl_53761 scaffold_9 + intron_skips_exon 644461-645690 asmbl_53762 // Exon Skipping and Retention # skipped_exon 644688-645850 (orient:+) max_ev_support = 1 # retained_exon 645134-645735 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 645134-645220,645343-645512,645691-645735 asmbl_53761 scaffold_9 + intron_skips_exon 644688-645850 asmbl_53764 // Exon Skipping and Retention # skipped_exon 643673-645133 (orient:+) max_ev_support = 2 # retained_exon 644077-644460 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 644077-644163,644291-644460 asmbl_53762 scaffold_9 + intron_skips_exon 643673-645133 asmbl_53761 // Retained and Spliced Intron # retained_intron 2799140-2801078 (orient:+) max_ev_support = 4 # spliced_intron 2799140-2801078 (orient:+) max_ev_support = 1 scaffold_9 + intron 2799140-2801078 asmbl_53848 scaffold_9 + retained_intron 2799140-2801078 asmbl_53842 // Exon Skipping and Retention # skipped_exon 2798884-2801078 (orient:+) max_ev_support = 3 # retained_exon 2799126-2799139 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 2799126-2799139 asmbl_53848 scaffold_9 + intron_skips_exon 2798884-2801078 asmbl_53844 // Exon Skipping and Retention # skipped_exon 3149490-3150174 (orient:+) max_ev_support = 3 # retained_exon 3149642-3149822 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 3149642-3149822 asmbl_53859 scaffold_9 + intron_skips_exon 3149490-3150174 asmbl_53858 // Exon Skipping and Retention # skipped_exon 3197498-3199171 (orient:+) max_ev_support = 2 # retained_exon 3198855-3198923 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 3198855-3198923 asmbl_53861 scaffold_9 + intron_skips_exon 3197498-3199171 asmbl_53862 // Retained and Spliced Intron # retained_intron 3375064-3375256 (orient:+) max_ev_support = 1 # spliced_intron 3375064-3375256 (orient:+) max_ev_support = 2 scaffold_9 + intron 3375064-3375256 asmbl_53872,asmbl_53875 scaffold_9 + retained_intron 3375064-3375256 asmbl_53873 // Exon Skipping and Retention # skipped_exon 3374363-3374990 (orient:+) max_ev_support = 2 # retained_exon 3374637-3374713 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3374637-3374713 asmbl_53874 scaffold_9 + intron_skips_exon 3374363-3374990 asmbl_53872,asmbl_53873 // Exon Skipping and Retention # skipped_exon 3374363-3374990 (orient:+) max_ev_support = 2 # retained_exon 3374637-3374669 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3374637-3374669 asmbl_53875 scaffold_9 + intron_skips_exon 3374363-3374990 asmbl_53872,asmbl_53873 // Exon Skipping and Retention # skipped_exon 3387052-3388058 (orient:+) max_ev_support = 3 # retained_exon 3387786-3387899 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3387786-3387899 asmbl_53881 scaffold_9 + intron_skips_exon 3387052-3388058 asmbl_53880 // Exon Skipping and Retention # skipped_exon 3663798-3666612 (orient:+) max_ev_support = 3 # retained_exon 3665717-3665928 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 3665717-3665928 asmbl_53888 scaffold_9 + intron_skips_exon 3663798-3666612 asmbl_53887 // Retained and Spliced Intron # retained_intron 3669216-3669242 (orient:+) max_ev_support = 2 # spliced_intron 3669216-3669242 (orient:+) max_ev_support = 1 scaffold_9 + intron 3669216-3669242 asmbl_53894 scaffold_9 + retained_intron 3669216-3669242 asmbl_53893 // Exon Skipping and Retention # skipped_exon 4203935-4206879 (orient:+) max_ev_support = 1 # retained_exon 4206166-4206311 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4206166-4206311 asmbl_53923 scaffold_9 + intron_skips_exon 4203935-4206879 asmbl_53924 // Exon Skipping and Retention # skipped_exon 4898501-4899242 (orient:+) max_ev_support = 1 # retained_exon 4899092-4899133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4899092-4899133 asmbl_53948 scaffold_9 + intron_skips_exon 4898501-4899242 asmbl_53949 // Exon Skipping and Retention # skipped_exon 4898798-4899430 (orient:+) max_ev_support = 1 # retained_exon 4899092-4899133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4899092-4899133 asmbl_53948 scaffold_9 + intron_skips_exon 4898798-4899430 asmbl_53950 // Exon Skipping and Retention # skipped_exon 4898175-4899091 (orient:+) max_ev_support = 1 # retained_exon 4898459-4898500 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 4898459-4898500 asmbl_53949 scaffold_9 + intron_skips_exon 4898175-4899091 asmbl_53948 // Exon Skipping and Retention # skipped_exon 5173038-5174369 (orient:+) max_ev_support = 1 # retained_exon 5173347-5174133 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5173347-5173468,5173760-5173900,5174044-5174133 asmbl_53981 scaffold_9 + intron_skips_exon 5173038-5174369 asmbl_53982 // Retained and Spliced Intron # retained_intron 5220781-5220889 (orient:+) max_ev_support = 2 # spliced_intron 5220781-5220889 (orient:+) max_ev_support = 2 scaffold_9 + intron 5220781-5220889 asmbl_53985,asmbl_53986,asmbl_53988 scaffold_9 + retained_intron 5220781-5220889 asmbl_53987 // Exon Skipping and Retention # skipped_exon 5276936-5279151 (orient:+) max_ev_support = 1 # retained_exon 5277420-5277434 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5277420-5277434 asmbl_53994 scaffold_9 + intron_skips_exon 5276936-5279151 asmbl_53993 // Retained and Spliced Intron # retained_intron 5283686-5284698 (orient:+) max_ev_support = 4 # spliced_intron 5283686-5284698 (orient:+) max_ev_support = 2 scaffold_9 + intron 5283686-5284698 asmbl_54008 scaffold_9 + retained_intron 5283686-5284698 asmbl_54006,asmbl_54007 // Exon Skipping and Retention # skipped_exon 5286019-5288508 (orient:+) max_ev_support = 3 # retained_exon 5286360-5286377 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 5286360-5286377 asmbl_54007 scaffold_9 + intron_skips_exon 5286019-5288508 asmbl_54006,asmbl_54008 // Retained and Spliced Intron # retained_intron 5468453-5468592 (orient:+) max_ev_support = 2 # spliced_intron 5468453-5468592 (orient:+) max_ev_support = 3 scaffold_9 + intron 5468453-5468592 asmbl_54028 scaffold_9 + retained_intron 5468453-5468592 asmbl_54029 // Retained and Spliced Intron # retained_intron 5473472-5473745 (orient:+) max_ev_support = 1 # spliced_intron 5473472-5473745 (orient:+) max_ev_support = 3 scaffold_9 + intron 5473472-5473745 asmbl_54030,asmbl_54031,asmbl_54032 scaffold_9 + retained_intron 5473472-5473745 asmbl_54033 // Exon Skipping and Retention # skipped_exon 5655421-5656306 (orient:+) max_ev_support = 2 # retained_exon 5655560-5655667 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 5655560-5655667 asmbl_54046 scaffold_9 + intron_skips_exon 5655421-5656306 asmbl_54044 // Exon Skipping and Retention # skipped_exon 6148887-6150219 (orient:+) max_ev_support = 1 # retained_exon 6149058-6149127 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 6149058-6149127 asmbl_54065 scaffold_9 + intron_skips_exon 6148887-6150219 asmbl_54064 // Retained and Spliced Intron # retained_intron 6284420-6284513 (orient:+) max_ev_support = 1 # spliced_intron 6284420-6284513 (orient:+) max_ev_support = 2 scaffold_9 + intron 6284420-6284513 asmbl_54072 scaffold_9 + retained_intron 6284420-6284513 asmbl_54073 // Retained and Spliced Intron # retained_intron 6290195-6290500 (orient:+) max_ev_support = 2 # spliced_intron 6290195-6290500 (orient:+) max_ev_support = 2 scaffold_9 + intron 6290195-6290500 asmbl_54075 scaffold_9 + retained_intron 6290195-6290500 asmbl_54074 // Retained and Spliced Intron # retained_intron 6400017-6400100 (orient:+) max_ev_support = 3 # spliced_intron 6400017-6400100 (orient:+) max_ev_support = 2 scaffold_9 + intron 6400017-6400100 asmbl_54080,asmbl_54081 scaffold_9 + retained_intron 6400017-6400100 asmbl_54079,asmbl_54082 // Exon Skipping and Retention # skipped_exon 6992294-6992756 (orient:+) max_ev_support = 2 # retained_exon 6992555-6992588 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 6992555-6992588 asmbl_54107 scaffold_9 + intron_skips_exon 6992294-6992756 asmbl_54108 // Retained and Spliced Intron # retained_intron 7025897-7025977 (orient:+) max_ev_support = 2 # spliced_intron 7025897-7025977 (orient:+) max_ev_support = 2 scaffold_9 + intron 7025897-7025977 asmbl_54110 scaffold_9 + retained_intron 7025897-7025977 asmbl_54111 // Exon Skipping and Retention # skipped_exon 7748473-7750937 (orient:+) max_ev_support = 1 # retained_exon 7750057-7750345 (orient:+) max_ev_support = 5 scaffold_9 + retained_exons 7750057-7750193,7750282-7750345 asmbl_54119 scaffold_9 + intron_skips_exon 7748473-7750937 asmbl_54120 // Exon Skipping and Retention # skipped_exon 7793887-7795348 (orient:+) max_ev_support = 1 # retained_exon 7794215-7794223 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 7794215-7794223 asmbl_54121,asmbl_54123,asmbl_54128,asmbl_54130 scaffold_9 + intron_skips_exon 7793887-7795348 asmbl_54126 // Retained and Spliced Intron # retained_intron 7796656-7797444 (orient:+) max_ev_support = 2 # spliced_intron 7796656-7797444 (orient:+) max_ev_support = 2 scaffold_9 + intron 7796656-7797444 asmbl_54122,asmbl_54123,asmbl_54126 scaffold_9 + retained_intron 7796656-7797444 asmbl_54121,asmbl_54128,asmbl_54130 // Retained and Spliced Intron # retained_intron 8180390-8180907 (orient:+) max_ev_support = 2 # spliced_intron 8180390-8180907 (orient:+) max_ev_support = 1 scaffold_9 + intron 8180390-8180907 asmbl_54147 scaffold_9 + retained_intron 8180390-8180907 asmbl_54145,asmbl_54146 // Retained and Spliced Intron # retained_intron 8395093-8395319 (orient:+) max_ev_support = 2 # spliced_intron 8395093-8395319 (orient:+) max_ev_support = 2 scaffold_9 + intron 8395093-8395319 asmbl_54157,asmbl_54161 scaffold_9 + retained_intron 8395093-8395319 asmbl_54155,asmbl_54156,asmbl_54160 // Exon Skipping and Retention # skipped_exon 8395341-8395973 (orient:+) max_ev_support = 2 # retained_exon 8395485-8395534 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 8395485-8395534 asmbl_54155 scaffold_9 + intron_skips_exon 8395341-8395973 asmbl_54157 // Exon Skipping and Retention # skipped_exon 8395093-8395925 (orient:+) max_ev_support = 2 # retained_exon 8395485-8395534 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 8395485-8395534 asmbl_54155 scaffold_9 + intron_skips_exon 8395093-8395925 asmbl_54158 // Retained and Spliced Intron # retained_intron 8395341-8395484 (orient:+) max_ev_support = 2 # spliced_intron 8395341-8395484 (orient:+) max_ev_support = 2 scaffold_9 + intron 8395341-8395484 asmbl_54155 scaffold_9 + retained_intron 8395341-8395484 asmbl_54156,asmbl_54160,asmbl_54161 // Retained and Spliced Intron # retained_intron 8396407-8396490 (orient:+) max_ev_support = 2 # spliced_intron 8396407-8396490 (orient:+) max_ev_support = 2 scaffold_9 + intron 8396407-8396490 asmbl_54155,asmbl_54156,asmbl_54157,asmbl_54158,asmbl_54160,asmbl_54161 scaffold_9 + retained_intron 8396407-8396490 asmbl_54159 // Retained and Spliced Intron # retained_intron 8396091-8396249 (orient:+) max_ev_support = 1 # spliced_intron 8396091-8396249 (orient:+) max_ev_support = 2 scaffold_9 + intron 8396091-8396249 asmbl_54155,asmbl_54156,asmbl_54157,asmbl_54158,asmbl_54161 scaffold_9 + retained_intron 8396091-8396249 asmbl_54160 // Retained and Spliced Intron # retained_intron 8934348-8934433 (orient:+) max_ev_support = 1 # spliced_intron 8934348-8934433 (orient:+) max_ev_support = 2 scaffold_9 + intron 8934348-8934433 asmbl_54169 scaffold_9 + retained_intron 8934348-8934433 asmbl_54170 // Retained and Spliced Intron # retained_intron 9369953-9370052 (orient:+) max_ev_support = 1 # spliced_intron 9369953-9370052 (orient:+) max_ev_support = 2 scaffold_9 + intron 9369953-9370052 asmbl_54184,asmbl_54186 scaffold_9 + retained_intron 9369953-9370052 asmbl_54185 // Retained and Spliced Intron # retained_intron 9547344-9547423 (orient:+) max_ev_support = 1 # spliced_intron 9547344-9547423 (orient:+) max_ev_support = 2 scaffold_9 + intron 9547344-9547423 asmbl_54190 scaffold_9 + retained_intron 9547344-9547423 asmbl_54191 // Retained and Spliced Intron # retained_intron 9643517-9643587 (orient:+) max_ev_support = 1 # spliced_intron 9643517-9643587 (orient:+) max_ev_support = 2 scaffold_9 + intron 9643517-9643587 asmbl_54198 scaffold_9 + retained_intron 9643517-9643587 asmbl_54199 // Retained and Spliced Intron # retained_intron 9644933-9645015 (orient:+) max_ev_support = 1 # spliced_intron 9644933-9645015 (orient:+) max_ev_support = 3 scaffold_9 + intron 9644933-9645015 asmbl_54200 scaffold_9 + retained_intron 9644933-9645015 asmbl_54201 // Retained and Spliced Intron # retained_intron 9648651-9648733 (orient:+) max_ev_support = 1 # spliced_intron 9648651-9648733 (orient:+) max_ev_support = 2 scaffold_9 + intron 9648651-9648733 asmbl_54203 scaffold_9 + retained_intron 9648651-9648733 asmbl_54204 // Retained and Spliced Intron # retained_intron 9653406-9653486 (orient:+) max_ev_support = 2 # spliced_intron 9653406-9653486 (orient:+) max_ev_support = 1 scaffold_9 + intron 9653406-9653486 asmbl_54209 scaffold_9 + retained_intron 9653406-9653486 asmbl_54205,asmbl_54207,asmbl_54208 // Exon Skipping and Retention # skipped_exon 9656031-9656875 (orient:+) max_ev_support = 1 # retained_exon 9656293-9656349 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9656293-9656349 asmbl_54205,asmbl_54207,asmbl_54209 scaffold_9 + intron_skips_exon 9656031-9656875 asmbl_54210 // Retained and Spliced Intron # retained_intron 9657137-9657296 (orient:+) max_ev_support = 1 # spliced_intron 9657137-9657296 (orient:+) max_ev_support = 2 scaffold_9 + intron 9657137-9657296 asmbl_54205,asmbl_54208,asmbl_54209 scaffold_9 + retained_intron 9657137-9657296 asmbl_54207,asmbl_54210 // Retained and Spliced Intron # retained_intron 9656350-9656875 (orient:+) max_ev_support = 1 # spliced_intron 9656350-9656875 (orient:+) max_ev_support = 2 scaffold_9 + intron 9656350-9656875 asmbl_54205,asmbl_54207,asmbl_54209 scaffold_9 + retained_intron 9656350-9656875 asmbl_54208 // Retained and Spliced Intron # retained_intron 9706825-9707000 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707000 (orient:+) max_ev_support = 1 scaffold_9 + intron 9706825-9707000 asmbl_54221 scaffold_9 + retained_intron 9706825-9707000 asmbl_54211 // Retained and Spliced Intron # retained_intron 9706825-9707265 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707265 (orient:+) max_ev_support = 2 scaffold_9 + intron 9706825-9707265 asmbl_54216 scaffold_9 + retained_intron 9706825-9707265 asmbl_54211 // Retained and Spliced Intron # retained_intron 9706825-9707760 (orient:+) max_ev_support = 3 # spliced_intron 9706825-9707760 (orient:+) max_ev_support = 2 scaffold_9 + intron 9706825-9707760 asmbl_54214 scaffold_9 + retained_intron 9706825-9707760 asmbl_54211 // Retained and Spliced Intron # retained_intron 9707335-9707760 (orient:+) max_ev_support = 3 # spliced_intron 9707335-9707760 (orient:+) max_ev_support = 2 scaffold_9 + intron 9707335-9707760 asmbl_54216 scaffold_9 + retained_intron 9707335-9707760 asmbl_54211,asmbl_54221 // Exon Skipping and Retention # skipped_exon 9705515-9707760 (orient:+) max_ev_support = 2 # retained_exon 9706783-9706824 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9706783-9706824 asmbl_54214,asmbl_54221 scaffold_9 + intron_skips_exon 9705515-9707760 asmbl_54217 // Exon Skipping and Retention # skipped_exon 9706825-9707760 (orient:+) max_ev_support = 2 # retained_exon 9707266-9707334 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9707266-9707334 asmbl_54216 scaffold_9 + intron_skips_exon 9706825-9707760 asmbl_54214 // Exon Skipping and Retention # skipped_exon 9722574-9723219 (orient:+) max_ev_support = 1 # retained_exon 9722941-9723030 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 9722941-9723030 asmbl_54225 scaffold_9 + intron_skips_exon 9722574-9723219 asmbl_54226 // Exon Skipping and Retention # skipped_exon 9733851-9736448 (orient:+) max_ev_support = 2 # retained_exon 9734383-9736023 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 9734383-9736023 asmbl_54227 scaffold_9 + intron_skips_exon 9733851-9736448 asmbl_54229 // Retained and Spliced Intron # retained_intron 9736024-9736448 (orient:+) max_ev_support = 3 # spliced_intron 9736024-9736448 (orient:+) max_ev_support = 3 scaffold_9 + intron 9736024-9736448 asmbl_54227,asmbl_54231 scaffold_9 + retained_intron 9736024-9736448 asmbl_54228,asmbl_54230 // Retained and Spliced Intron # retained_intron 9853052-9854248 (orient:+) max_ev_support = 2 # spliced_intron 9853052-9854248 (orient:+) max_ev_support = 1 scaffold_9 + intron 9853052-9854248 asmbl_54253 scaffold_9 + retained_intron 9853052-9854248 asmbl_54248,asmbl_54250 // Retained and Spliced Intron # retained_intron 9853059-9854248 (orient:+) max_ev_support = 2 # spliced_intron 9853059-9854248 (orient:+) max_ev_support = 2 scaffold_9 + intron 9853059-9854248 asmbl_54249,asmbl_54252 scaffold_9 + retained_intron 9853059-9854248 asmbl_54248,asmbl_54250 // Retained and Spliced Intron # retained_intron 10063361-10063447 (orient:+) max_ev_support = 3 # spliced_intron 10063361-10063447 (orient:+) max_ev_support = 3 scaffold_9 + intron 10063361-10063447 asmbl_54260 scaffold_9 + retained_intron 10063361-10063447 asmbl_54261,asmbl_54262 // Exon Skipping and Retention # skipped_exon 10916510-10917412 (orient:+) max_ev_support = 1 # retained_exon 10916874-10917011 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 10916874-10917011 asmbl_54295 scaffold_9 + intron_skips_exon 10916510-10917412 asmbl_54294 // Retained and Spliced Intron # retained_intron 10918975-10919509 (orient:+) max_ev_support = 2 # spliced_intron 10918975-10919509 (orient:+) max_ev_support = 2 scaffold_9 + intron 10918975-10919509 asmbl_54294 scaffold_9 + retained_intron 10918975-10919509 asmbl_54295 // Retained and Spliced Intron # retained_intron 11054396-11054475 (orient:+) max_ev_support = 2 # spliced_intron 11054396-11054475 (orient:+) max_ev_support = 2 scaffold_9 + intron 11054396-11054475 asmbl_54316 scaffold_9 + retained_intron 11054396-11054475 asmbl_54317 // Retained and Spliced Intron # retained_intron 11777366-11777484 (orient:+) max_ev_support = 2 # spliced_intron 11777366-11777484 (orient:+) max_ev_support = 1 scaffold_9 + intron 11777366-11777484 asmbl_54361,asmbl_54362 scaffold_9 + retained_intron 11777366-11777484 asmbl_54360 // Retained and Spliced Intron # retained_intron 11777566-11777728 (orient:+) max_ev_support = 2 # spliced_intron 11777566-11777728 (orient:+) max_ev_support = 1 scaffold_9 + intron 11777566-11777728 asmbl_54362 scaffold_9 + retained_intron 11777566-11777728 asmbl_54360 // Retained and Spliced Intron # retained_intron 11777566-11777749 (orient:+) max_ev_support = 2 # spliced_intron 11777566-11777749 (orient:+) max_ev_support = 1 scaffold_9 + intron 11777566-11777749 asmbl_54361 scaffold_9 + retained_intron 11777566-11777749 asmbl_54360 // Retained and Spliced Intron # retained_intron 11815085-11815410 (orient:+) max_ev_support = 2 # spliced_intron 11815085-11815410 (orient:+) max_ev_support = 3 scaffold_9 + intron 11815085-11815410 asmbl_54366 scaffold_9 + retained_intron 11815085-11815410 asmbl_54367 // Retained and Spliced Intron # retained_intron 11815672-11815756 (orient:+) max_ev_support = 2 # spliced_intron 11815672-11815756 (orient:+) max_ev_support = 3 scaffold_9 + intron 11815672-11815756 asmbl_54366 scaffold_9 + retained_intron 11815672-11815756 asmbl_54368 // Retained and Spliced Intron # retained_intron 11835838-11835897 (orient:+) max_ev_support = 3 # spliced_intron 11835838-11835897 (orient:+) max_ev_support = 1 scaffold_9 + intron 11835838-11835897 asmbl_54370 scaffold_9 + retained_intron 11835838-11835897 asmbl_54369 // Retained and Spliced Intron # retained_intron 11877608-11877697 (orient:+) max_ev_support = 2 # spliced_intron 11877608-11877697 (orient:+) max_ev_support = 1 scaffold_9 + intron 11877608-11877697 asmbl_54375 scaffold_9 + retained_intron 11877608-11877697 asmbl_54374 // Retained and Spliced Intron # retained_intron 12012109-12012204 (orient:+) max_ev_support = 2 # spliced_intron 12012109-12012204 (orient:+) max_ev_support = 1 scaffold_9 + intron 12012109-12012204 asmbl_54391 scaffold_9 + retained_intron 12012109-12012204 asmbl_54389 // Retained and Spliced Intron # retained_intron 12012157-12012204 (orient:+) max_ev_support = 2 # spliced_intron 12012157-12012204 (orient:+) max_ev_support = 1 scaffold_9 + intron 12012157-12012204 asmbl_54390 scaffold_9 + retained_intron 12012157-12012204 asmbl_54389 // Retained and Spliced Intron # retained_intron 12270251-12270362 (orient:+) max_ev_support = 1 # spliced_intron 12270251-12270362 (orient:+) max_ev_support = 2 scaffold_9 + intron 12270251-12270362 asmbl_54402 scaffold_9 + retained_intron 12270251-12270362 asmbl_54404,asmbl_54405 // Retained and Spliced Intron # retained_intron 12305541-12305790 (orient:+) max_ev_support = 1 # spliced_intron 12305541-12305790 (orient:+) max_ev_support = 2 scaffold_9 + intron 12305541-12305790 asmbl_54409 scaffold_9 + retained_intron 12305541-12305790 asmbl_54410,asmbl_54411 // Retained and Spliced Intron # retained_intron 12305963-12306075 (orient:+) max_ev_support = 1 # spliced_intron 12305963-12306075 (orient:+) max_ev_support = 2 scaffold_9 + intron 12305963-12306075 asmbl_54409,asmbl_54411 scaffold_9 + retained_intron 12305963-12306075 asmbl_54410 // Retained and Spliced Intron # retained_intron 12436520-12436852 (orient:+) max_ev_support = 3 # spliced_intron 12436520-12436852 (orient:+) max_ev_support = 1 scaffold_9 + intron 12436520-12436852 asmbl_54413 scaffold_9 + retained_intron 12436520-12436852 asmbl_54412 // Retained and Spliced Intron # retained_intron 12438282-12438337 (orient:+) max_ev_support = 3 # spliced_intron 12438282-12438337 (orient:+) max_ev_support = 1 scaffold_9 + intron 12438282-12438337 asmbl_54414 scaffold_9 + retained_intron 12438282-12438337 asmbl_54412 // Retained and Spliced Intron # retained_intron 12476191-12476332 (orient:+) max_ev_support = 2 # spliced_intron 12476191-12476332 (orient:+) max_ev_support = 1 scaffold_9 + intron 12476191-12476332 asmbl_54420,asmbl_54421 scaffold_9 + retained_intron 12476191-12476332 asmbl_54419 // Retained and Spliced Intron # retained_intron 12580227-12580248 (orient:+) max_ev_support = 2 # spliced_intron 12580227-12580248 (orient:+) max_ev_support = 1 scaffold_9 + intron 12580227-12580248 asmbl_54425 scaffold_9 + retained_intron 12580227-12580248 asmbl_54426 // Retained and Spliced Intron # retained_intron 12637304-12637387 (orient:+) max_ev_support = 3 # spliced_intron 12637304-12637387 (orient:+) max_ev_support = 2 scaffold_9 + intron 12637304-12637387 asmbl_54434 scaffold_9 + retained_intron 12637304-12637387 asmbl_54429,asmbl_54430,asmbl_54431 // Retained and Spliced Intron # retained_intron 12831578-12831611 (orient:+) max_ev_support = 1 # spliced_intron 12831578-12831611 (orient:+) max_ev_support = 1 scaffold_9 + intron 12831578-12831611 asmbl_54451 scaffold_9 + retained_intron 12831578-12831611 asmbl_54452 // Retained and Spliced Intron # retained_intron 13040881-13040907 (orient:+) max_ev_support = 1 # spliced_intron 13040881-13040907 (orient:+) max_ev_support = 1 scaffold_9 + intron 13040881-13040907 asmbl_54462 scaffold_9 + retained_intron 13040881-13040907 asmbl_54463 // Retained and Spliced Intron # retained_intron 13278875-13279273 (orient:+) max_ev_support = 2 # spliced_intron 13278875-13279273 (orient:+) max_ev_support = 1 scaffold_9 + intron 13278875-13279273 asmbl_54472 scaffold_9 + retained_intron 13278875-13279273 asmbl_54471 // Retained and Spliced Intron # retained_intron 13278982-13279273 (orient:+) max_ev_support = 2 # spliced_intron 13278982-13279273 (orient:+) max_ev_support = 1 scaffold_9 + intron 13278982-13279273 asmbl_54473 scaffold_9 + retained_intron 13278982-13279273 asmbl_54471 // Retained and Spliced Intron # retained_intron 13279621-13279904 (orient:+) max_ev_support = 2 # spliced_intron 13279621-13279904 (orient:+) max_ev_support = 3 scaffold_9 + intron 13279621-13279904 asmbl_54471,asmbl_54472,asmbl_54473 scaffold_9 + retained_intron 13279621-13279904 asmbl_54474 // Exon Skipping and Retention # skipped_exon 13606570-13608048 (orient:+) max_ev_support = 2 # retained_exon 13607545-13607747 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 13607545-13607747 asmbl_54487 scaffold_9 + intron_skips_exon 13606570-13608048 asmbl_54486 // Retained and Spliced Intron # retained_intron 13640033-13640444 (orient:+) max_ev_support = 5 # spliced_intron 13640033-13640444 (orient:+) max_ev_support = 2 scaffold_9 + intron 13640033-13640444 asmbl_54490 scaffold_9 + retained_intron 13640033-13640444 asmbl_54489 // Exon Skipping and Retention # skipped_exon 14039157-14041365 (orient:+) max_ev_support = 3 # retained_exon 14039466-14039546 (orient:+) max_ev_support = 3 scaffold_9 + retained_exons 14039466-14039546 asmbl_54498 scaffold_9 + intron_skips_exon 14039157-14041365 asmbl_54497 // Retained and Spliced Intron # retained_intron 14039157-14039465 (orient:+) max_ev_support = 2 # spliced_intron 14039157-14039465 (orient:+) max_ev_support = 3 scaffold_9 + intron 14039157-14039465 asmbl_54498 scaffold_9 + retained_intron 14039157-14039465 asmbl_54499 // Exon Skipping and Retention # skipped_exon 15384227-15384899 (orient:+) max_ev_support = 2 # retained_exon 15384544-15384598 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 15384544-15384598 asmbl_54537,asmbl_54541 scaffold_9 + intron_skips_exon 15384227-15384899 asmbl_54538,asmbl_54539,asmbl_54542 // Retained and Spliced Intron # retained_intron 15384227-15384543 (orient:+) max_ev_support = 1 # spliced_intron 15384227-15384543 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384227-15384543 asmbl_54537,asmbl_54541 scaffold_9 + retained_intron 15384227-15384543 asmbl_54540 // Retained and Spliced Intron # retained_intron 15384227-15384899 (orient:+) max_ev_support = 1 # spliced_intron 15384227-15384899 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384227-15384899 asmbl_54538,asmbl_54539,asmbl_54542 scaffold_9 + retained_intron 15384227-15384899 asmbl_54540 // Retained and Spliced Intron # retained_intron 15384599-15384899 (orient:+) max_ev_support = 1 # spliced_intron 15384599-15384899 (orient:+) max_ev_support = 2 scaffold_9 + intron 15384599-15384899 asmbl_54537,asmbl_54541 scaffold_9 + retained_intron 15384599-15384899 asmbl_54540 // Retained and Spliced Intron # retained_intron 15394570-15395108 (orient:+) max_ev_support = 3 # spliced_intron 15394570-15395108 (orient:+) max_ev_support = 3 scaffold_9 + intron 15394570-15395108 asmbl_54543,asmbl_54544,asmbl_54548,asmbl_54549 scaffold_9 + retained_intron 15394570-15395108 asmbl_54545 // Retained and Spliced Intron # retained_intron 15396303-15396380 (orient:+) max_ev_support = 2 # spliced_intron 15396303-15396380 (orient:+) max_ev_support = 3 scaffold_9 + intron 15396303-15396380 asmbl_54543,asmbl_54544,asmbl_54545,asmbl_54549 scaffold_9 + retained_intron 15396303-15396380 asmbl_54548 // Retained and Spliced Intron # retained_intron 15395597-15395679 (orient:+) max_ev_support = 2 # spliced_intron 15395597-15395679 (orient:+) max_ev_support = 3 scaffold_9 + intron 15395597-15395679 asmbl_54543,asmbl_54544,asmbl_54545,asmbl_54548 scaffold_9 + retained_intron 15395597-15395679 asmbl_54549 // Exon Skipping and Retention # skipped_exon 15589007-15589902 (orient:+) max_ev_support = 2 # retained_exon 15589170-15589184 (orient:+) max_ev_support = 1 scaffold_9 + retained_exons 15589170-15589184 asmbl_54557,asmbl_54558 scaffold_9 + intron_skips_exon 15589007-15589902 asmbl_54554,asmbl_54556 // Retained and Spliced Intron # retained_intron 15589185-15589902 (orient:+) max_ev_support = 1 # spliced_intron 15589185-15589902 (orient:+) max_ev_support = 1 scaffold_9 + intron 15589185-15589902 asmbl_54557,asmbl_54558 scaffold_9 + retained_intron 15589185-15589902 asmbl_54559,asmbl_54560 // Retained and Spliced Intron # retained_intron 15746966-15746996 (orient:+) max_ev_support = 3 # spliced_intron 15746966-15746996 (orient:+) max_ev_support = 1 scaffold_9 + intron 15746966-15746996 asmbl_54563 scaffold_9 + retained_intron 15746966-15746996 asmbl_54562 // Retained and Spliced Intron # retained_intron 16568264-16568413 (orient:+) max_ev_support = 2 # spliced_intron 16568264-16568413 (orient:+) max_ev_support = 1 scaffold_9 + intron 16568264-16568413 asmbl_54580 scaffold_9 + retained_intron 16568264-16568413 asmbl_54573,asmbl_54575 // Retained and Spliced Intron # retained_intron 16568288-16568413 (orient:+) max_ev_support = 2 # spliced_intron 16568288-16568413 (orient:+) max_ev_support = 2 scaffold_9 + intron 16568288-16568413 asmbl_54574,asmbl_54576,asmbl_54577,asmbl_54578,asmbl_54579 scaffold_9 + retained_intron 16568288-16568413 asmbl_54573,asmbl_54575 // Retained and Spliced Intron # retained_intron 16570130-16570300 (orient:+) max_ev_support = 2 # spliced_intron 16570130-16570300 (orient:+) max_ev_support = 2 scaffold_9 + intron 16570130-16570300 asmbl_54572,asmbl_54574,asmbl_54576,asmbl_54578,asmbl_54579,asmbl_54580 scaffold_9 + retained_intron 16570130-16570300 asmbl_54573,asmbl_54575,asmbl_54577 // Retained and Spliced Intron # retained_intron 16570389-16570696 (orient:+) max_ev_support = 2 # spliced_intron 16570389-16570696 (orient:+) max_ev_support = 2 scaffold_9 + intron 16570389-16570696 asmbl_54572,asmbl_54579 scaffold_9 + retained_intron 16570389-16570696 asmbl_54573,asmbl_54574,asmbl_54575,asmbl_54576,asmbl_54577,asmbl_54578,asmbl_54580 // Retained and Spliced Intron # retained_intron 16569591-16569821 (orient:+) max_ev_support = 2 # spliced_intron 16569591-16569821 (orient:+) max_ev_support = 2 scaffold_9 + intron 16569591-16569821 asmbl_54573,asmbl_54578 scaffold_9 + retained_intron 16569591-16569821 asmbl_54574 // Retained and Spliced Intron # retained_intron 16569591-16569995 (orient:+) max_ev_support = 2 # spliced_intron 16569591-16569995 (orient:+) max_ev_support = 2 scaffold_9 + intron 16569591-16569995 asmbl_54572,asmbl_54575,asmbl_54576,asmbl_54577,asmbl_54579,asmbl_54580 scaffold_9 + retained_intron 16569591-16569995 asmbl_54574 // Retained and Spliced Intron # retained_intron 16575074-16575191 (orient:+) max_ev_support = 2 # spliced_intron 16575074-16575191 (orient:+) max_ev_support = 2 scaffold_9 + intron 16575074-16575191 asmbl_54581 scaffold_9 + retained_intron 16575074-16575191 asmbl_54583 // Retained and Spliced Intron # retained_intron 16575103-16575191 (orient:+) max_ev_support = 2 # spliced_intron 16575103-16575191 (orient:+) max_ev_support = 2 scaffold_9 + intron 16575103-16575191 asmbl_54582 scaffold_9 + retained_intron 16575103-16575191 asmbl_54583 // Retained and Spliced Intron # retained_intron 17454872-17454904 (orient:+) max_ev_support = 4 # spliced_intron 17454872-17454904 (orient:+) max_ev_support = 1 scaffold_9 + intron 17454872-17454904 asmbl_54609 scaffold_9 + retained_intron 17454872-17454904 asmbl_54606 // Exon Skipping and Retention # skipped_exon 17742976-17743198 (orient:+) max_ev_support = 2 # retained_exon 17743057-17743120 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 17743057-17743120 asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54619 scaffold_9 + intron_skips_exon 17742976-17743198 asmbl_54620 // Retained and Spliced Intron # retained_intron 17743121-17743198 (orient:+) max_ev_support = 1 # spliced_intron 17743121-17743198 (orient:+) max_ev_support = 2 scaffold_9 + intron 17743121-17743198 asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54619 scaffold_9 + retained_intron 17743121-17743198 asmbl_54618 // Retained and Spliced Intron # retained_intron 17743454-17743546 (orient:+) max_ev_support = 1 # spliced_intron 17743454-17743546 (orient:+) max_ev_support = 2 scaffold_9 + intron 17743454-17743546 asmbl_54615,asmbl_54616,asmbl_54617,asmbl_54618,asmbl_54620 scaffold_9 + retained_intron 17743454-17743546 asmbl_54619 // Retained and Spliced Intron # retained_intron 17849137-17851107 (orient:+) max_ev_support = 5 # spliced_intron 17849137-17851107 (orient:+) max_ev_support = 1 scaffold_9 + intron 17849137-17851107 asmbl_54632,asmbl_54633 scaffold_9 + retained_intron 17849137-17851107 asmbl_54629 // Retained and Spliced Intron # retained_intron 17851315-17851392 (orient:+) max_ev_support = 1 # spliced_intron 17851315-17851392 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851315-17851392 asmbl_54630,asmbl_54631,asmbl_54633 scaffold_9 + retained_intron 17851315-17851392 asmbl_54629 // Retained and Spliced Intron # retained_intron 17851315-17852001 (orient:+) max_ev_support = 1 # spliced_intron 17851315-17852001 (orient:+) max_ev_support = 1 scaffold_9 + intron 17851315-17852001 asmbl_54632 scaffold_9 + retained_intron 17851315-17852001 asmbl_54629 // Retained and Spliced Intron # retained_intron 17851504-17851736 (orient:+) max_ev_support = 2 # spliced_intron 17851504-17851736 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851504-17851736 asmbl_54631 scaffold_9 + retained_intron 17851504-17851736 asmbl_54629,asmbl_54630,asmbl_54633 // Retained and Spliced Intron # retained_intron 17851854-17852001 (orient:+) max_ev_support = 2 # spliced_intron 17851854-17852001 (orient:+) max_ev_support = 2 scaffold_9 + intron 17851854-17852001 asmbl_54631,asmbl_54633 scaffold_9 + retained_intron 17851854-17852001 asmbl_54629,asmbl_54630 // Exon Skipping and Retention # skipped_exon 17851315-17852001 (orient:+) max_ev_support = 1 # retained_exon 17851393-17851853 (orient:+) max_ev_support = 2 scaffold_9 + retained_exons 17851393-17851503,17851737-17851853 asmbl_54631 scaffold_9 + retained_exons 17851393-17851853 asmbl_54633 scaffold_9 + intron_skips_exon 17851315-17852001 asmbl_54632 // Retained and Spliced Intron # retained_intron 61373-61963 (orient:-) max_ev_support = 4 # spliced_intron 61373-61963 (orient:-) max_ev_support = 3 scaffold_9 - intron 61373-61963 asmbl_54768 scaffold_9 - retained_intron 61373-61963 asmbl_54767 // Retained and Spliced Intron # retained_intron 61590-61877 (orient:-) max_ev_support = 4 # spliced_intron 61590-61877 (orient:-) max_ev_support = 1 scaffold_9 - intron 61590-61877 asmbl_54769 scaffold_9 - retained_intron 61590-61877 asmbl_54767 // Retained and Spliced Intron # retained_intron 537756-537789 (orient:-) max_ev_support = 3 # spliced_intron 537756-537789 (orient:-) max_ev_support = 1 scaffold_9 - intron 537756-537789 asmbl_54773 scaffold_9 - retained_intron 537756-537789 asmbl_54772 // Retained and Spliced Intron # retained_intron 2400442-2400475 (orient:-) max_ev_support = 1 # spliced_intron 2400442-2400475 (orient:-) max_ev_support = 1 scaffold_9 - intron 2400442-2400475 asmbl_54833 scaffold_9 - retained_intron 2400442-2400475 asmbl_54835 // Retained and Spliced Intron # retained_intron 2468905-2469096 (orient:-) max_ev_support = 1 # spliced_intron 2468905-2469096 (orient:-) max_ev_support = 2 scaffold_9 - intron 2468905-2469096 asmbl_54840 scaffold_9 - retained_intron 2468905-2469096 asmbl_54841 // Retained and Spliced Intron # retained_intron 2502740-2502833 (orient:-) max_ev_support = 1 # spliced_intron 2502740-2502833 (orient:-) max_ev_support = 2 scaffold_9 - intron 2502740-2502833 asmbl_54842 scaffold_9 - retained_intron 2502740-2502833 asmbl_54843 // Retained and Spliced Intron # retained_intron 3413981-3414140 (orient:-) max_ev_support = 2 # spliced_intron 3413981-3414140 (orient:-) max_ev_support = 1 scaffold_9 - intron 3413981-3414140 asmbl_54867,asmbl_54870 scaffold_9 - retained_intron 3413981-3414140 asmbl_54865 // Retained and Spliced Intron # retained_intron 3414002-3414140 (orient:-) max_ev_support = 2 # spliced_intron 3414002-3414140 (orient:-) max_ev_support = 1 scaffold_9 - intron 3414002-3414140 asmbl_54866,asmbl_54869 scaffold_9 - retained_intron 3414002-3414140 asmbl_54865 // Exon Skipping and Retention # skipped_exon 3674467-3676841 (orient:-) max_ev_support = 3 # retained_exon 3675428-3675783 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 3675428-3675783 asmbl_54884 scaffold_9 - intron_skips_exon 3674467-3676841 asmbl_54885,asmbl_54891 // Retained and Spliced Intron # retained_intron 3672539-3672630 (orient:-) max_ev_support = 1 # spliced_intron 3672539-3672630 (orient:-) max_ev_support = 3 scaffold_9 - intron 3672539-3672630 asmbl_54884,asmbl_54885,asmbl_54890 scaffold_9 - retained_intron 3672539-3672630 asmbl_54886 // Retained and Spliced Intron # retained_intron 3711582-3711674 (orient:-) max_ev_support = 3 # spliced_intron 3711582-3711674 (orient:-) max_ev_support = 3 scaffold_9 - intron 3711582-3711674 asmbl_54896 scaffold_9 - retained_intron 3711582-3711674 asmbl_54895 // Retained and Spliced Intron # retained_intron 3912783-3912902 (orient:-) max_ev_support = 2 # spliced_intron 3912783-3912902 (orient:-) max_ev_support = 3 scaffold_9 - intron 3912783-3912902 asmbl_54912,asmbl_54914 scaffold_9 - retained_intron 3912783-3912902 asmbl_54913 // Retained and Spliced Intron # retained_intron 4160412-4160541 (orient:-) max_ev_support = 1 # spliced_intron 4160412-4160541 (orient:-) max_ev_support = 2 scaffold_9 - intron 4160412-4160541 asmbl_54919 scaffold_9 - retained_intron 4160412-4160541 asmbl_54920 // Exon Skipping and Retention # skipped_exon 5549383-5552354 (orient:-) max_ev_support = 2 # retained_exon 5552113-5552128 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 5552113-5552128 asmbl_54975 scaffold_9 - intron_skips_exon 5549383-5552354 asmbl_54972,asmbl_54974 // Retained and Spliced Intron # retained_intron 5552129-5552354 (orient:-) max_ev_support = 1 # spliced_intron 5552129-5552354 (orient:-) max_ev_support = 1 scaffold_9 - intron 5552129-5552354 asmbl_54975 scaffold_9 - retained_intron 5552129-5552354 asmbl_54976 // Retained and Spliced Intron # retained_intron 5757730-5758224 (orient:-) max_ev_support = 6 # spliced_intron 5757730-5758224 (orient:-) max_ev_support = 2 scaffold_9 - intron 5757730-5758224 asmbl_54990,asmbl_54991 scaffold_9 - retained_intron 5757730-5758224 asmbl_54989 // Retained and Spliced Intron # retained_intron 5844925-5845204 (orient:-) max_ev_support = 2 # spliced_intron 5844925-5845204 (orient:-) max_ev_support = 2 scaffold_9 - intron 5844925-5845204 asmbl_55003 scaffold_9 - retained_intron 5844925-5845204 asmbl_55004 // Retained and Spliced Intron # retained_intron 6240560-6240600 (orient:-) max_ev_support = 2 # spliced_intron 6240560-6240600 (orient:-) max_ev_support = 2 scaffold_9 - intron 6240560-6240600 asmbl_55009 scaffold_9 - retained_intron 6240560-6240600 asmbl_55010 // Retained and Spliced Intron # retained_intron 6396892-6397036 (orient:-) max_ev_support = 1 # spliced_intron 6396892-6397036 (orient:-) max_ev_support = 1 scaffold_9 - intron 6396892-6397036 asmbl_55017 scaffold_9 - retained_intron 6396892-6397036 asmbl_55016 // Retained and Spliced Intron # retained_intron 6396897-6397036 (orient:-) max_ev_support = 1 # spliced_intron 6396897-6397036 (orient:-) max_ev_support = 2 scaffold_9 - intron 6396897-6397036 asmbl_55015 scaffold_9 - retained_intron 6396897-6397036 asmbl_55016 // Retained and Spliced Intron # retained_intron 6717195-6717297 (orient:-) max_ev_support = 1 # spliced_intron 6717195-6717297 (orient:-) max_ev_support = 1 scaffold_9 - intron 6717195-6717297 asmbl_55029 scaffold_9 - retained_intron 6717195-6717297 asmbl_55030 // Exon Skipping and Retention # skipped_exon 6741220-6742496 (orient:-) max_ev_support = 2 # retained_exon 6741724-6741829 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 6741724-6741829 asmbl_55035,asmbl_55036 scaffold_9 - intron_skips_exon 6741220-6742496 asmbl_55032 // Exon Skipping and Retention # skipped_exon 6846481-6847463 (orient:-) max_ev_support = 1 # retained_exon 6846822-6846917 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 6846822-6846917 asmbl_55037,asmbl_55040 scaffold_9 - intron_skips_exon 6846481-6847463 asmbl_55039 // Exon Skipping and Retention # skipped_exon 6866921-6867246 (orient:-) max_ev_support = 1 # retained_exon 6867066-6867131 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 6867066-6867131 asmbl_55042,asmbl_55043 scaffold_9 - intron_skips_exon 6866921-6867246 asmbl_55045 // Retained and Spliced Intron # retained_intron 6901990-6902110 (orient:-) max_ev_support = 2 # spliced_intron 6901990-6902110 (orient:-) max_ev_support = 2 scaffold_9 - intron 6901990-6902110 asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55053,asmbl_55054,asmbl_55056 scaffold_9 - retained_intron 6901990-6902110 asmbl_55047,asmbl_55050,asmbl_55052,asmbl_55055,asmbl_55057,asmbl_55058 // Retained and Spliced Intron # retained_intron 6903754-6903877 (orient:-) max_ev_support = 2 # spliced_intron 6903754-6903877 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903754-6903877 asmbl_55049,asmbl_55050,asmbl_55052,asmbl_55053,asmbl_55054 scaffold_9 - retained_intron 6903754-6903877 asmbl_55047,asmbl_55048,asmbl_55051,asmbl_55055,asmbl_55056,asmbl_55057,asmbl_55058 // Retained and Spliced Intron # retained_intron 6902292-6902430 (orient:-) max_ev_support = 1 # spliced_intron 6902292-6902430 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902292-6902430 asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55056,asmbl_55057 scaffold_9 - retained_intron 6902292-6902430 asmbl_55050,asmbl_55055,asmbl_55058 // Retained and Spliced Intron # retained_intron 6902533-6902622 (orient:-) max_ev_support = 1 # spliced_intron 6902533-6902622 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902533-6902622 asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55056,asmbl_55057 scaffold_9 - retained_intron 6902533-6902622 asmbl_55050,asmbl_55055,asmbl_55058 // Retained and Spliced Intron # retained_intron 6902827-6902922 (orient:-) max_ev_support = 1 # spliced_intron 6902827-6902922 (orient:-) max_ev_support = 2 scaffold_9 - intron 6902827-6902922 asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55051,asmbl_55052,asmbl_55054 scaffold_9 - retained_intron 6902827-6902922 asmbl_55050,asmbl_55053,asmbl_55055,asmbl_55056,asmbl_55057,asmbl_55058 // Retained and Spliced Intron # retained_intron 6903131-6903325 (orient:-) max_ev_support = 1 # spliced_intron 6903131-6903325 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903131-6903325 asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55050,asmbl_55052,asmbl_55053,asmbl_55055,asmbl_55056 scaffold_9 - retained_intron 6903131-6903325 asmbl_55051,asmbl_55054,asmbl_55057,asmbl_55058 // Retained and Spliced Intron # retained_intron 6903544-6903648 (orient:-) max_ev_support = 1 # spliced_intron 6903544-6903648 (orient:-) max_ev_support = 2 scaffold_9 - intron 6903544-6903648 asmbl_55047,asmbl_55048,asmbl_55049,asmbl_55050,asmbl_55051,asmbl_55052,asmbl_55053,asmbl_55054,asmbl_55055,asmbl_55056,asmbl_55058 scaffold_9 - retained_intron 6903544-6903648 asmbl_55057 // Retained and Spliced Intron # retained_intron 6904964-6905103 (orient:-) max_ev_support = 2 # spliced_intron 6904964-6905103 (orient:-) max_ev_support = 3 scaffold_9 - intron 6904964-6905103 asmbl_55059 scaffold_9 - retained_intron 6904964-6905103 asmbl_55061 // Retained and Spliced Intron # retained_intron 6904964-6905139 (orient:-) max_ev_support = 2 # spliced_intron 6904964-6905139 (orient:-) max_ev_support = 2 scaffold_9 - intron 6904964-6905139 asmbl_55062 scaffold_9 - retained_intron 6904964-6905139 asmbl_55061 // Exon Skipping and Retention # skipped_exon 6919651-6920387 (orient:-) max_ev_support = 1 # retained_exon 6920093-6920161 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 6920093-6920161 asmbl_55065,asmbl_55066,asmbl_55069 scaffold_9 - intron_skips_exon 6919651-6920387 asmbl_55068 // Retained and Spliced Intron # retained_intron 6920728-6921103 (orient:-) max_ev_support = 2 # spliced_intron 6920728-6921103 (orient:-) max_ev_support = 2 scaffold_9 - intron 6920728-6921103 asmbl_55065,asmbl_55069 scaffold_9 - retained_intron 6920728-6921103 asmbl_55066 // Retained and Spliced Intron # retained_intron 7823073-7823170 (orient:-) max_ev_support = 1 # spliced_intron 7823073-7823170 (orient:-) max_ev_support = 2 scaffold_9 - intron 7823073-7823170 asmbl_55077 scaffold_9 - retained_intron 7823073-7823170 asmbl_55078 // Retained and Spliced Intron # retained_intron 8028814-8028894 (orient:-) max_ev_support = 1 # spliced_intron 8028814-8028894 (orient:-) max_ev_support = 2 scaffold_9 - intron 8028814-8028894 asmbl_55080,asmbl_55081 scaffold_9 - retained_intron 8028814-8028894 asmbl_55082 // Retained and Spliced Intron # retained_intron 8399726-8399808 (orient:-) max_ev_support = 1 # spliced_intron 8399726-8399808 (orient:-) max_ev_support = 2 scaffold_9 - intron 8399726-8399808 asmbl_55093 scaffold_9 - retained_intron 8399726-8399808 asmbl_55094 // Exon Skipping and Retention # skipped_exon 8938979-8939567 (orient:-) max_ev_support = 1 # retained_exon 8939254-8939364 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 8939254-8939364 asmbl_55113,asmbl_55114,asmbl_55116 scaffold_9 - intron_skips_exon 8938979-8939567 asmbl_55112,asmbl_55115 // Retained and Spliced Intron # retained_intron 8939956-8940066 (orient:-) max_ev_support = 1 # spliced_intron 8939956-8940066 (orient:-) max_ev_support = 1 scaffold_9 - intron 8939956-8940066 asmbl_55112,asmbl_55113,asmbl_55115,asmbl_55116 scaffold_9 - retained_intron 8939956-8940066 asmbl_55114 // Retained and Spliced Intron # retained_intron 8948604-8948646 (orient:-) max_ev_support = 2 # spliced_intron 8948604-8948646 (orient:-) max_ev_support = 1 scaffold_9 - intron 8948604-8948646 asmbl_55122 scaffold_9 - retained_intron 8948604-8948646 asmbl_55121 // Retained and Spliced Intron # retained_intron 9405231-9405353 (orient:-) max_ev_support = 4 # spliced_intron 9405231-9405353 (orient:-) max_ev_support = 2 scaffold_9 - intron 9405231-9405353 asmbl_55130 scaffold_9 - retained_intron 9405231-9405353 asmbl_55129 // Retained and Spliced Intron # retained_intron 9470104-9470201 (orient:-) max_ev_support = 1 # spliced_intron 9470104-9470201 (orient:-) max_ev_support = 1 scaffold_9 - intron 9470104-9470201 asmbl_55145,asmbl_55146,asmbl_55147,asmbl_55149,asmbl_55151 scaffold_9 - retained_intron 9470104-9470201 asmbl_55148,asmbl_55150 // Exon Skipping and Retention # skipped_exon 9530448-9530758 (orient:-) max_ev_support = 1 # retained_exon 9530592-9530675 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9530592-9530675 asmbl_55155,asmbl_55156,asmbl_55158 scaffold_9 - intron_skips_exon 9530448-9530758 asmbl_55157 // Exon Skipping and Retention # skipped_exon 9531268-9532064 (orient:-) max_ev_support = 1 # retained_exon 9531883-9531909 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9531883-9531909 asmbl_55155 scaffold_9 - intron_skips_exon 9531268-9532064 asmbl_55156,asmbl_55157,asmbl_55158 // Retained and Spliced Intron # retained_intron 9596820-9596951 (orient:-) max_ev_support = 3 # spliced_intron 9596820-9596951 (orient:-) max_ev_support = 1 scaffold_9 - intron 9596820-9596951 asmbl_55176 scaffold_9 - retained_intron 9596820-9596951 asmbl_55174,asmbl_55175 // Retained and Spliced Intron # retained_intron 9597034-9597966 (orient:-) max_ev_support = 3 # spliced_intron 9597034-9597966 (orient:-) max_ev_support = 3 scaffold_9 - intron 9597034-9597966 asmbl_55174 scaffold_9 - retained_intron 9597034-9597966 asmbl_55175,asmbl_55176 // Exon Skipping and Retention # skipped_exon 9614148-9615590 (orient:-) max_ev_support = 1 # retained_exon 9614424-9614495 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9614424-9614495 asmbl_55181 scaffold_9 - intron_skips_exon 9614148-9615590 asmbl_55185 // Retained and Spliced Intron # retained_intron 9664373-9664460 (orient:-) max_ev_support = 1 # spliced_intron 9664373-9664460 (orient:-) max_ev_support = 1 scaffold_9 - intron 9664373-9664460 asmbl_55197 scaffold_9 - retained_intron 9664373-9664460 asmbl_55195 // Exon Skipping and Retention # skipped_exon 9691365-9692259 (orient:-) max_ev_support = 1 # retained_exon 9692063-9692107 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9692063-9692107 asmbl_55200,asmbl_55201,asmbl_55203,asmbl_55204 scaffold_9 - intron_skips_exon 9691365-9692259 asmbl_55205 // Retained and Spliced Intron # retained_intron 9688546-9688614 (orient:-) max_ev_support = 1 # spliced_intron 9688546-9688614 (orient:-) max_ev_support = 1 scaffold_9 - intron 9688546-9688614 asmbl_55205 scaffold_9 - retained_intron 9688546-9688614 asmbl_55203,asmbl_55204 // Retained and Spliced Intron # retained_intron 9688546-9688647 (orient:-) max_ev_support = 1 # spliced_intron 9688546-9688647 (orient:-) max_ev_support = 2 scaffold_9 - intron 9688546-9688647 asmbl_55200,asmbl_55201 scaffold_9 - retained_intron 9688546-9688647 asmbl_55203,asmbl_55204 // Exon Skipping and Retention # skipped_exon 9870174-9871613 (orient:-) max_ev_support = 3 # retained_exon 9871369-9871452 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 9871369-9871452 asmbl_55209 scaffold_9 - intron_skips_exon 9870174-9871613 asmbl_55208 // Retained and Spliced Intron # retained_intron 11021992-11022126 (orient:-) max_ev_support = 2 # spliced_intron 11021992-11022126 (orient:-) max_ev_support = 1 scaffold_9 - intron 11021992-11022126 asmbl_55232 scaffold_9 - retained_intron 11021992-11022126 asmbl_55230,asmbl_55231 // Retained and Spliced Intron # retained_intron 11028497-11028576 (orient:-) max_ev_support = 1 # spliced_intron 11028497-11028576 (orient:-) max_ev_support = 1 scaffold_9 - intron 11028497-11028576 asmbl_55233 scaffold_9 - retained_intron 11028497-11028576 asmbl_55234 // Retained and Spliced Intron # retained_intron 11551049-11551499 (orient:-) max_ev_support = 2 # spliced_intron 11551049-11551499 (orient:-) max_ev_support = 2 scaffold_9 - intron 11551049-11551499 asmbl_55258,asmbl_55261 scaffold_9 - retained_intron 11551049-11551499 asmbl_55259,asmbl_55260 // Retained and Spliced Intron # retained_intron 11551708-11551928 (orient:-) max_ev_support = 2 # spliced_intron 11551708-11551928 (orient:-) max_ev_support = 2 scaffold_9 - intron 11551708-11551928 asmbl_55258,asmbl_55260 scaffold_9 - retained_intron 11551708-11551928 asmbl_55259,asmbl_55261 // Retained and Spliced Intron # retained_intron 11793088-11794280 (orient:-) max_ev_support = 1 # spliced_intron 11793088-11794280 (orient:-) max_ev_support = 2 scaffold_9 - intron 11793088-11794280 asmbl_55268,asmbl_55270,asmbl_55272 scaffold_9 - retained_intron 11793088-11794280 asmbl_55266,asmbl_55267,asmbl_55271 // Retained and Spliced Intron # retained_intron 11793088-11794485 (orient:-) max_ev_support = 1 # spliced_intron 11793088-11794485 (orient:-) max_ev_support = 2 scaffold_9 - intron 11793088-11794485 asmbl_55265,asmbl_55269 scaffold_9 - retained_intron 11793088-11794485 asmbl_55267,asmbl_55271 // Retained and Spliced Intron # retained_intron 11794319-11794485 (orient:-) max_ev_support = 1 # spliced_intron 11794319-11794485 (orient:-) max_ev_support = 2 scaffold_9 - intron 11794319-11794485 asmbl_55266,asmbl_55268,asmbl_55270,asmbl_55272 scaffold_9 - retained_intron 11794319-11794485 asmbl_55267,asmbl_55271 // Retained and Spliced Intron # retained_intron 11795862-11796216 (orient:-) max_ev_support = 1 # spliced_intron 11795862-11796216 (orient:-) max_ev_support = 1 scaffold_9 - intron 11795862-11796216 asmbl_55265,asmbl_55266,asmbl_55270 scaffold_9 - retained_intron 11795862-11796216 asmbl_55267,asmbl_55272 // Exon Skipping and Retention # skipped_exon 11793088-11794485 (orient:-) max_ev_support = 2 # retained_exon 11794281-11794318 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 11794281-11794318 asmbl_55268,asmbl_55270,asmbl_55272 scaffold_9 - intron_skips_exon 11793088-11794485 asmbl_55265,asmbl_55269 // Retained and Spliced Intron # retained_intron 11825456-11825553 (orient:-) max_ev_support = 1 # spliced_intron 11825456-11825553 (orient:-) max_ev_support = 1 scaffold_9 - intron 11825456-11825553 asmbl_55281 scaffold_9 - retained_intron 11825456-11825553 asmbl_55279,asmbl_55280,asmbl_55282 // Retained and Spliced Intron # retained_intron 11836844-11837012 (orient:-) max_ev_support = 2 # spliced_intron 11836844-11837012 (orient:-) max_ev_support = 2 scaffold_9 - intron 11836844-11837012 asmbl_55289,asmbl_55292 scaffold_9 - retained_intron 11836844-11837012 asmbl_55287,asmbl_55288,asmbl_55290,asmbl_55291 // Retained and Spliced Intron # retained_intron 11837109-11837256 (orient:-) max_ev_support = 2 # spliced_intron 11837109-11837256 (orient:-) max_ev_support = 2 scaffold_9 - intron 11837109-11837256 asmbl_55287,asmbl_55289,asmbl_55290,asmbl_55291,asmbl_55292 scaffold_9 - retained_intron 11837109-11837256 asmbl_55288 // Retained and Spliced Intron # retained_intron 11837471-11837624 (orient:-) max_ev_support = 1 # spliced_intron 11837471-11837624 (orient:-) max_ev_support = 2 scaffold_9 - intron 11837471-11837624 asmbl_55287,asmbl_55288,asmbl_55289,asmbl_55291,asmbl_55292 scaffold_9 - retained_intron 11837471-11837624 asmbl_55290 // Retained and Spliced Intron # retained_intron 11842900-11843151 (orient:-) max_ev_support = 2 # spliced_intron 11842900-11843151 (orient:-) max_ev_support = 1 scaffold_9 - intron 11842900-11843151 asmbl_55299 scaffold_9 - retained_intron 11842900-11843151 asmbl_55293,asmbl_55296,asmbl_55297,asmbl_55298 // Retained and Spliced Intron # retained_intron 11842903-11843151 (orient:-) max_ev_support = 2 # spliced_intron 11842903-11843151 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842903-11843151 asmbl_55294 scaffold_9 - retained_intron 11842903-11843151 asmbl_55293,asmbl_55296,asmbl_55297,asmbl_55298 // Retained and Spliced Intron # retained_intron 11843908-11844161 (orient:-) max_ev_support = 1 # spliced_intron 11843908-11844161 (orient:-) max_ev_support = 2 scaffold_9 - intron 11843908-11844161 asmbl_55293,asmbl_55294,asmbl_55297,asmbl_55298,asmbl_55299,asmbl_55300 scaffold_9 - retained_intron 11843908-11844161 asmbl_55296 // Retained and Spliced Intron # retained_intron 11842492-11842644 (orient:-) max_ev_support = 1 # spliced_intron 11842492-11842644 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842492-11842644 asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55299 scaffold_9 - retained_intron 11842492-11842644 asmbl_55297,asmbl_55298 // Retained and Spliced Intron # retained_intron 11842724-11842821 (orient:-) max_ev_support = 1 # spliced_intron 11842724-11842821 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842724-11842821 asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55299 scaffold_9 - retained_intron 11842724-11842821 asmbl_55297,asmbl_55298 // Retained and Spliced Intron # retained_intron 11842071-11842161 (orient:-) max_ev_support = 1 # spliced_intron 11842071-11842161 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842071-11842161 asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55299 scaffold_9 - retained_intron 11842071-11842161 asmbl_55298 // Retained and Spliced Intron # retained_intron 11842283-11842383 (orient:-) max_ev_support = 1 # spliced_intron 11842283-11842383 (orient:-) max_ev_support = 2 scaffold_9 - intron 11842283-11842383 asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55299 scaffold_9 - retained_intron 11842283-11842383 asmbl_55298 // Retained and Spliced Intron # retained_intron 11843488-11843598 (orient:-) max_ev_support = 1 # spliced_intron 11843488-11843598 (orient:-) max_ev_support = 2 scaffold_9 - intron 11843488-11843598 asmbl_55293,asmbl_55294,asmbl_55296,asmbl_55297,asmbl_55298,asmbl_55299 scaffold_9 - retained_intron 11843488-11843598 asmbl_55300 // Retained and Spliced Intron # retained_intron 11851343-11852018 (orient:-) max_ev_support = 2 # spliced_intron 11851343-11852018 (orient:-) max_ev_support = 2 scaffold_9 - intron 11851343-11852018 asmbl_55301 scaffold_9 - retained_intron 11851343-11852018 asmbl_55303 // Retained and Spliced Intron # retained_intron 12073542-12074636 (orient:-) max_ev_support = 2 # spliced_intron 12073542-12074636 (orient:-) max_ev_support = 3 scaffold_9 - intron 12073542-12074636 asmbl_55315 scaffold_9 - retained_intron 12073542-12074636 asmbl_55316 // Retained and Spliced Intron # retained_intron 12272920-12273070 (orient:-) max_ev_support = 1 # spliced_intron 12272920-12273070 (orient:-) max_ev_support = 2 scaffold_9 - intron 12272920-12273070 asmbl_55329 scaffold_9 - retained_intron 12272920-12273070 asmbl_55330 // Retained and Spliced Intron # retained_intron 13297054-13297098 (orient:-) max_ev_support = 3 # spliced_intron 13297054-13297098 (orient:-) max_ev_support = 1 scaffold_9 - intron 13297054-13297098 asmbl_55385,asmbl_55386,asmbl_55387 scaffold_9 - retained_intron 13297054-13297098 asmbl_55380,asmbl_55381,asmbl_55382,asmbl_55383 // Retained and Spliced Intron # retained_intron 13304979-13305210 (orient:-) max_ev_support = 4 # spliced_intron 13304979-13305210 (orient:-) max_ev_support = 2 scaffold_9 - intron 13304979-13305210 asmbl_55390,asmbl_55392,asmbl_55393 scaffold_9 - retained_intron 13304979-13305210 asmbl_55389 // Retained and Spliced Intron # retained_intron 13319452-13319594 (orient:-) max_ev_support = 1 # spliced_intron 13319452-13319594 (orient:-) max_ev_support = 1 scaffold_9 - intron 13319452-13319594 asmbl_55401 scaffold_9 - retained_intron 13319452-13319594 asmbl_55400 // Retained and Spliced Intron # retained_intron 13323052-13323206 (orient:-) max_ev_support = 3 # spliced_intron 13323052-13323206 (orient:-) max_ev_support = 2 scaffold_9 - intron 13323052-13323206 asmbl_55403 scaffold_9 - retained_intron 13323052-13323206 asmbl_55402 // Retained and Spliced Intron # retained_intron 13368752-13368963 (orient:-) max_ev_support = 2 # spliced_intron 13368752-13368963 (orient:-) max_ev_support = 2 scaffold_9 - intron 13368752-13368963 asmbl_55405 scaffold_9 - retained_intron 13368752-13368963 asmbl_55406 // Exon Skipping and Retention # skipped_exon 13851707-13854305 (orient:-) max_ev_support = 1 # retained_exon 13852585-13854152 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 13852585-13852626,13854102-13854152 asmbl_55408,asmbl_55409 scaffold_9 - intron_skips_exon 13851707-13854305 asmbl_55413 // Exon Skipping and Retention # skipped_exon 14315617-14316311 (orient:-) max_ev_support = 1 # retained_exon 14315898-14315991 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 14315898-14315991 asmbl_55441 scaffold_9 - intron_skips_exon 14315617-14316311 asmbl_55442 // Retained and Spliced Intron # retained_intron 14817657-14817753 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14817753 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14817753 asmbl_55462 scaffold_9 - retained_intron 14817657-14817753 asmbl_55459,asmbl_55466 // Retained and Spliced Intron # retained_intron 14817657-14817774 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14817774 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14817774 asmbl_55463,asmbl_55467 scaffold_9 - retained_intron 14817657-14817774 asmbl_55459,asmbl_55466 // Retained and Spliced Intron # retained_intron 14817657-14818073 (orient:-) max_ev_support = 2 # spliced_intron 14817657-14818073 (orient:-) max_ev_support = 2 scaffold_9 - intron 14817657-14818073 asmbl_55460,asmbl_55461,asmbl_55468 scaffold_9 - retained_intron 14817657-14818073 asmbl_55459,asmbl_55466 // Retained and Spliced Intron # retained_intron 14818996-14819580 (orient:-) max_ev_support = 1 # spliced_intron 14818996-14819580 (orient:-) max_ev_support = 1 scaffold_9 - intron 14818996-14819580 asmbl_55465,asmbl_55466,asmbl_55468 scaffold_9 - retained_intron 14818996-14819580 asmbl_55464 // Retained and Spliced Intron # retained_intron 14818996-14819592 (orient:-) max_ev_support = 1 # spliced_intron 14818996-14819592 (orient:-) max_ev_support = 2 scaffold_9 - intron 14818996-14819592 asmbl_55458,asmbl_55461 scaffold_9 - retained_intron 14818996-14819592 asmbl_55464 // Exon Skipping and Retention # skipped_exon 15221769-15223286 (orient:-) max_ev_support = 2 # retained_exon 15221955-15222080 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 15221955-15222080 asmbl_55476,asmbl_55477 scaffold_9 - intron_skips_exon 15221769-15223286 asmbl_55475 // Exon Skipping and Retention # skipped_exon 15495374-15496423 (orient:-) max_ev_support = 2 # retained_exon 15495475-15495510 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 15495475-15495510 asmbl_55496 scaffold_9 - intron_skips_exon 15495374-15496423 asmbl_55497 // Retained and Spliced Intron # retained_intron 15495374-15495474 (orient:-) max_ev_support = 2 # spliced_intron 15495374-15495474 (orient:-) max_ev_support = 2 scaffold_9 - intron 15495374-15495474 asmbl_55495,asmbl_55496 scaffold_9 - retained_intron 15495374-15495474 asmbl_55498 // Exon Skipping and Retention # skipped_exon 16282211-16284224 (orient:-) max_ev_support = 2 # retained_exon 16282311-16282358 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16282311-16282358 asmbl_55528 scaffold_9 - intron_skips_exon 16282211-16284224 asmbl_55529 // Retained and Spliced Intron # retained_intron 16282211-16282310 (orient:-) max_ev_support = 1 # spliced_intron 16282211-16282310 (orient:-) max_ev_support = 2 scaffold_9 - intron 16282211-16282310 asmbl_55528 scaffold_9 - retained_intron 16282211-16282310 asmbl_55530 // Exon Skipping and Retention # skipped_exon 16346615-16347997 (orient:-) max_ev_support = 1 # retained_exon 16346812-16347045 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16346812-16346885,16346978-16347045 asmbl_55531 scaffold_9 - intron_skips_exon 16346615-16347997 asmbl_55532 // Retained and Spliced Intron # retained_intron 16558842-16559279 (orient:-) max_ev_support = 3 # spliced_intron 16558842-16559279 (orient:-) max_ev_support = 1 scaffold_9 - intron 16558842-16559279 asmbl_55549 scaffold_9 - retained_intron 16558842-16559279 asmbl_55544,asmbl_55546,asmbl_55547 // Retained and Spliced Intron # retained_intron 16558842-16561320 (orient:-) max_ev_support = 5 # spliced_intron 16558842-16561320 (orient:-) max_ev_support = 3 scaffold_9 - intron 16558842-16561320 asmbl_55545,asmbl_55548 scaffold_9 - retained_intron 16558842-16561320 asmbl_55544,asmbl_55546,asmbl_55547 // Retained and Spliced Intron # retained_intron 16559310-16560403 (orient:-) max_ev_support = 5 # spliced_intron 16559310-16560403 (orient:-) max_ev_support = 1 scaffold_9 - intron 16559310-16560403 asmbl_55549 scaffold_9 - retained_intron 16559310-16560403 asmbl_55544,asmbl_55546,asmbl_55547 // Retained and Spliced Intron # retained_intron 16560431-16561320 (orient:-) max_ev_support = 3 # spliced_intron 16560431-16561320 (orient:-) max_ev_support = 1 scaffold_9 - intron 16560431-16561320 asmbl_55549 scaffold_9 - retained_intron 16560431-16561320 asmbl_55544,asmbl_55546,asmbl_55547 // Retained and Spliced Intron # retained_intron 16561348-16562614 (orient:-) max_ev_support = 3 # spliced_intron 16561348-16562614 (orient:-) max_ev_support = 3 scaffold_9 - intron 16561348-16562614 asmbl_55545,asmbl_55548,asmbl_55549 scaffold_9 - retained_intron 16561348-16562614 asmbl_55544,asmbl_55546,asmbl_55547 // Exon Skipping and Retention # skipped_exon 16563815-16566225 (orient:-) max_ev_support = 3 # retained_exon 16564428-16565837 (orient:-) max_ev_support = 5 scaffold_9 - retained_exons 16564428-16564754,16565760-16565837 asmbl_55544,asmbl_55545,asmbl_55546 scaffold_9 - intron_skips_exon 16563815-16566225 asmbl_55547,asmbl_55548,asmbl_55549,asmbl_55550,asmbl_55551 // Retained and Spliced Intron # retained_intron 16562642-16563669 (orient:-) max_ev_support = 1 # spliced_intron 16562642-16563669 (orient:-) max_ev_support = 3 scaffold_9 - intron 16562642-16563669 asmbl_55544,asmbl_55545,asmbl_55547,asmbl_55548,asmbl_55549 scaffold_9 - retained_intron 16562642-16563669 asmbl_55546,asmbl_55550,asmbl_55551 // Exon Skipping and Retention # skipped_exon 16558842-16561320 (orient:-) max_ev_support = 3 # retained_exon 16559280-16560430 (orient:-) max_ev_support = 1 scaffold_9 - retained_exons 16559280-16559309,16560404-16560430 asmbl_55549 scaffold_9 - intron_skips_exon 16558842-16561320 asmbl_55545,asmbl_55548 // Retained and Spliced Intron # retained_intron 16628131-16628261 (orient:-) max_ev_support = 2 # spliced_intron 16628131-16628261 (orient:-) max_ev_support = 1 scaffold_9 - intron 16628131-16628261 asmbl_55559,asmbl_55560 scaffold_9 - retained_intron 16628131-16628261 asmbl_55557,asmbl_55558 // Retained and Spliced Intron # retained_intron 16654233-16654417 (orient:-) max_ev_support = 2 # spliced_intron 16654233-16654417 (orient:-) max_ev_support = 2 scaffold_9 - intron 16654233-16654417 asmbl_55563,asmbl_55564,asmbl_55565,asmbl_55566,asmbl_55567 scaffold_9 - retained_intron 16654233-16654417 asmbl_55562,asmbl_55568 // Retained and Spliced Intron # retained_intron 16656777-16657454 (orient:-) max_ev_support = 2 # spliced_intron 16656777-16657454 (orient:-) max_ev_support = 2 scaffold_9 - intron 16656777-16657454 asmbl_55565,asmbl_55568 scaffold_9 - retained_intron 16656777-16657454 asmbl_55563,asmbl_55564,asmbl_55567 // Retained and Spliced Intron # retained_intron 16656048-16656688 (orient:-) max_ev_support = 1 # spliced_intron 16656048-16656688 (orient:-) max_ev_support = 2 scaffold_9 - intron 16656048-16656688 asmbl_55563,asmbl_55564,asmbl_55565,asmbl_55567,asmbl_55568 scaffold_9 - retained_intron 16656048-16656688 asmbl_55566 // Retained and Spliced Intron # retained_intron 16664696-16664923 (orient:-) max_ev_support = 1 # spliced_intron 16664696-16664923 (orient:-) max_ev_support = 2 scaffold_9 - intron 16664696-16664923 asmbl_55571 scaffold_9 - retained_intron 16664696-16664923 asmbl_55572 // Retained and Spliced Intron # retained_intron 16664696-16665148 (orient:-) max_ev_support = 1 # spliced_intron 16664696-16665148 (orient:-) max_ev_support = 2 scaffold_9 - intron 16664696-16665148 asmbl_55570 scaffold_9 - retained_intron 16664696-16665148 asmbl_55572 // Exon Skipping and Retention # skipped_exon 16687742-16690662 (orient:-) max_ev_support = 1 # retained_exon 16689720-16689740 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16689720-16689740 asmbl_55575 scaffold_9 - intron_skips_exon 16687742-16690662 asmbl_55577 // Exon Skipping and Retention # skipped_exon 16708338-16709158 (orient:-) max_ev_support = 1 # retained_exon 16708929-16708985 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 16708929-16708985 asmbl_55579,asmbl_55580 scaffold_9 - intron_skips_exon 16708338-16709158 asmbl_55581 // Retained and Spliced Intron # retained_intron 16738714-16738866 (orient:-) max_ev_support = 2 # spliced_intron 16738714-16738866 (orient:-) max_ev_support = 3 scaffold_9 - intron 16738714-16738866 asmbl_55583,asmbl_55584,asmbl_55587 scaffold_9 - retained_intron 16738714-16738866 asmbl_55586 // Retained and Spliced Intron # retained_intron 16738922-16739205 (orient:-) max_ev_support = 2 # spliced_intron 16738922-16739205 (orient:-) max_ev_support = 3 scaffold_9 - intron 16738922-16739205 asmbl_55584 scaffold_9 - retained_intron 16738922-16739205 asmbl_55586 // Retained and Spliced Intron # retained_intron 17456173-17456492 (orient:-) max_ev_support = 4 # spliced_intron 17456173-17456492 (orient:-) max_ev_support = 2 scaffold_9 - intron 17456173-17456492 asmbl_55606 scaffold_9 - retained_intron 17456173-17456492 asmbl_55605 // Retained and Spliced Intron # retained_intron 17469882-17470142 (orient:-) max_ev_support = 2 # spliced_intron 17469882-17470142 (orient:-) max_ev_support = 1 scaffold_9 - intron 17469882-17470142 asmbl_55612 scaffold_9 - retained_intron 17469882-17470142 asmbl_55610 // Retained and Spliced Intron # retained_intron 17469882-17470146 (orient:-) max_ev_support = 2 # spliced_intron 17469882-17470146 (orient:-) max_ev_support = 2 scaffold_9 - intron 17469882-17470146 asmbl_55609 scaffold_9 - retained_intron 17469882-17470146 asmbl_55610 // Exon Skipping and Retention # skipped_exon 17495937-17497232 (orient:-) max_ev_support = 3 # retained_exon 17496036-17496107 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 17496036-17496107 asmbl_55617 scaffold_9 - intron_skips_exon 17495937-17497232 asmbl_55616 // Retained and Spliced Intron # retained_intron 17548809-17549033 (orient:-) max_ev_support = 3 # spliced_intron 17548809-17549033 (orient:-) max_ev_support = 1 scaffold_9 - intron 17548809-17549033 asmbl_55619 scaffold_9 - retained_intron 17548809-17549033 asmbl_55618 // Retained and Spliced Intron # retained_intron 17610765-17610884 (orient:-) max_ev_support = 3 # spliced_intron 17610765-17610884 (orient:-) max_ev_support = 3 scaffold_9 - intron 17610765-17610884 asmbl_55623,asmbl_55625 scaffold_9 - retained_intron 17610765-17610884 asmbl_55622,asmbl_55624,asmbl_55629 // Exon Skipping and Retention # skipped_exon 17659157-17660769 (orient:-) max_ev_support = 3 # retained_exon 17659940-17659977 (orient:-) max_ev_support = 3 scaffold_9 - retained_exons 17659940-17659977 asmbl_55631,asmbl_55633 scaffold_9 - intron_skips_exon 17659157-17660769 asmbl_55632 // Retained and Spliced Intron # retained_intron 17658989-17659123 (orient:-) max_ev_support = 3 # spliced_intron 17658989-17659123 (orient:-) max_ev_support = 3 scaffold_9 - intron 17658989-17659123 asmbl_55631 scaffold_9 - retained_intron 17658989-17659123 asmbl_55632,asmbl_55633 // Retained and Spliced Intron # retained_intron 17790249-17790655 (orient:-) max_ev_support = 2 # spliced_intron 17790249-17790655 (orient:-) max_ev_support = 2 scaffold_9 - intron 17790249-17790655 asmbl_55643,asmbl_55646 scaffold_9 - retained_intron 17790249-17790655 asmbl_55644,asmbl_55645,asmbl_55647 // Exon Skipping and Retention # skipped_exon 18355765-18356507 (orient:-) max_ev_support = 2 # retained_exon 18355949-18356027 (orient:-) max_ev_support = 2 scaffold_9 - retained_exons 18355949-18356027 asmbl_55662 scaffold_9 - intron_skips_exon 18355765-18356507 asmbl_55663 // Retained and Spliced Intron # retained_intron 18394317-18394385 (orient:-) max_ev_support = 1 # spliced_intron 18394317-18394385 (orient:-) max_ev_support = 2 scaffold_9 - intron 18394317-18394385 asmbl_55665 scaffold_9 - retained_intron 18394317-18394385 asmbl_55666 // Retained and Spliced Intron # retained_intron 11162-11400 (orient:+) max_ev_support = 3 # spliced_intron 11162-11400 (orient:+) max_ev_support = 2 scaffold_94 + intron 11162-11400 asmbl_55806 scaffold_94 + retained_intron 11162-11400 asmbl_55805