# This output was generated with AUGUSTUS (version 3.3.2). # AUGUSTUS is a gene prediction tool written by M. Stanke (mario.stanke@uni-greifswald.de), # O. Keller, S. König, L. Gerischer, L. Romoth and Katharina Hoff. # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters using config directory /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/ab_initio_parameters/augustus/ ... # plecoglossus_altivelis version. Using default transition matrix. # admissible start codons and their probabilities: ATG(1), CTG(0), TTG(0) # Looks like /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/augustus.training.pasa.gb.test is in genbank format. Augustus uses the annotation for evaluation of accuracy. # Read in 261 genbank sequences. # # ----- sequence number 1 (length = 2295, name = scaffold_1_952229-954523) ----- # # annotation: # Sequence scaffold_1_952229-954523 length=2295 scaffold_1_952229-954523 database start_codon 601 603 . + 0 transcript_id "g_6-T1.1"; gene_id "g_6-T1"; scaffold_1_952229-954523 database intron 749 1315 . + . transcript_id "g_6-T1.1"; gene_id "g_6-T1"; scaffold_1_952229-954523 database CDS 601 748 . + 0 transcript_id "g_6-T1.1"; gene_id "g_6-T1"; scaffold_1_952229-954523 database CDS 1316 1695 . + 2 transcript_id "g_6-T1.1"; gene_id "g_6-T1"; scaffold_1_952229-954523 database stop_codon 1693 1695 . + 0 transcript_id "g_6-T1.1"; gene_id "g_6-T1"; # Predicted genes for sequence number 1 on both strands # start gene g1 scaffold_1_952229-954523 AUGUSTUS gene 631 1695 0.92 + . g1 scaffold_1_952229-954523 AUGUSTUS transcript 631 1695 0.92 + . g1.t1 scaffold_1_952229-954523 AUGUSTUS start_codon 631 633 . + 0 transcript_id "g1.t1"; gene_id "g1"; scaffold_1_952229-954523 AUGUSTUS intron 749 1315 1 + . transcript_id "g1.t1"; gene_id "g1"; scaffold_1_952229-954523 AUGUSTUS CDS 631 748 0.92 + 0 transcript_id "g1.t1"; gene_id "g1"; scaffold_1_952229-954523 AUGUSTUS CDS 1316 1695 1 + 2 transcript_id "g1.t1"; gene_id "g1"; scaffold_1_952229-954523 AUGUSTUS stop_codon 1693 1695 . + 0 transcript_id "g1.t1"; gene_id "g1"; # protein sequence = [MGPEVTAAATFVSRLLRTRGFLSEHQLQVFRDCLQQSLSEHYQQHWFPDKPQKGSGYRCIRINHEMDPIIGRAAGRIG # LTSDELFSLLPRELTMWVDPYEVSYRIGEDGSTCVLYEAEAPSTPSPAASAVNKTASPYESQLTCKKSFLMGGRTSPPKNYLMTVSS] # end gene g1 ### # # ----- sequence number 2 (length = 10988, name = scaffold_1_3451098-3462085) ----- # # annotation: # Sequence scaffold_1_3451098-3462085 length=10988 scaffold_1_3451098-3462085 database start_codon 601 603 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 681 1827 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 1902 2461 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 2599 3003 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 3095 3594 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 3672 3767 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 3805 3949 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 4048 4297 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 4418 4602 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 4770 5034 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 5171 5566 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 5717 5887 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 5982 6361 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 6439 6926 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 7062 7685 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 7812 8427 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 8580 9318 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database intron 9455 10313 . + . transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 601 680 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 1828 1901 . + 1 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 2462 2598 . + 2 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 3004 3094 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 3595 3671 . + 2 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 3768 3804 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 3950 4047 . + 2 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 4298 4417 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 4603 4769 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 5035 5170 . + 1 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 5567 5716 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 5888 5981 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 6362 6438 . + 2 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 6927 7061 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 7686 7811 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 8428 8579 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 9319 9454 . + 1 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database CDS 10314 10388 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; scaffold_1_3451098-3462085 database stop_codon 10386 10388 . + 0 transcript_id "g_20-T1.1"; gene_id "g_20-T1"; # Predicted genes for sequence number 2 on both strands # start gene g2 scaffold_1_3451098-3462085 AUGUSTUS gene 1 10388 0.65 + . g2 scaffold_1_3451098-3462085 AUGUSTUS transcript 1 10388 0.65 + . g2.t1 scaffold_1_3451098-3462085 AUGUSTUS intron 1 574 0.88 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 681 1827 0.99 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 1902 2461 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 2599 3003 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 3095 3594 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 3672 3767 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 3805 3949 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 4048 4297 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 4418 4602 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 4770 5034 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 5171 5566 0.98 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 5717 5887 0.72 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 5982 6361 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 6439 6926 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 7062 7685 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 7812 8427 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 8580 9318 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS intron 9455 10313 1 + . transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 575 680 0.93 + 2 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 1828 1901 0.99 + 1 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 2462 2598 1 + 2 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 3004 3094 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 3595 3671 1 + 2 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 3768 3804 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 3950 4047 1 + 2 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 4298 4417 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 4603 4769 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 5035 5170 1 + 1 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 5567 5716 0.71 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 5888 5981 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 6362 6438 1 + 2 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 6927 7061 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 7686 7811 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 8428 8579 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 9319 9454 1 + 1 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS CDS 10314 10388 1 + 0 transcript_id "g2.t1"; gene_id "g2"; scaffold_1_3451098-3462085 AUGUSTUS stop_codon 10386 10388 . + 0 transcript_id "g2.t1"; gene_id "g2"; # protein sequence = [QGQTPSDEMPIIAVMVALSSLLVIVFIIIILYMLRFKKYKQAGSHSNSFRLTNGRSDETELQSVPLLARSPSTNRKYP # PLPVDKLEEEMNRRMADDNKLFREEFNALPVCPIQASCDAASKEENKEKNRYVNILPYDHSRVHLLSLEGVPDSDFINASFINGYQEKNKFIAAQGPK # EETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDMMVLVDYTIRKFCIQQVGDVSGKKPQRLVTQFHFTSWPDFGVPF # TPIGMLKFLKKVKTCNPQYAGPIVVHCSAGVGRTGTFIVIDAMLDMMNTERKVDVFGFVTRIRAQRCQMVQTDMQYVFIFQAMLEHYLYGDTELEVTS # LESHLAKLYAPSPGAGCGGMEAEFKKLTSIKIQNDKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYMACQGPLQ # HTIEDFWRMIWEWRSCSIVMLTELEERGQEKCAQYWPSDGVVVYGDIAIELKREEESESYTVRDLLVTNNRENKARAVRLFHFHGWPEVGIPTDGKGM # INIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYANFK] # end gene g2 ### # # ----- sequence number 3 (length = 1940, name = scaffold_1_3605535-3607474) ----- # # annotation: # Sequence scaffold_1_3605535-3607474 length=1940 scaffold_1_3605535-3607474 database start_codon 601 603 . + 0 transcript_id "g_22-T1.1"; gene_id "g_22-T1"; scaffold_1_3605535-3607474 database intron 728 1020 . + . transcript_id "g_22-T1.1"; gene_id "g_22-T1"; scaffold_1_3605535-3607474 database CDS 601 727 . + 0 transcript_id "g_22-T1.1"; gene_id "g_22-T1"; scaffold_1_3605535-3607474 database CDS 1021 1340 . + 2 transcript_id "g_22-T1.1"; gene_id "g_22-T1"; scaffold_1_3605535-3607474 database stop_codon 1338 1340 . + 0 transcript_id "g_22-T1.1"; gene_id "g_22-T1"; # Predicted genes for sequence number 3 on both strands # start gene g3 scaffold_1_3605535-3607474 AUGUSTUS gene 601 1340 0.78 + . g3 scaffold_1_3605535-3607474 AUGUSTUS transcript 601 1340 0.78 + . g3.t1 scaffold_1_3605535-3607474 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g3.t1"; gene_id "g3"; scaffold_1_3605535-3607474 AUGUSTUS intron 728 1020 1 + . transcript_id "g3.t1"; gene_id "g3"; scaffold_1_3605535-3607474 AUGUSTUS CDS 601 727 0.78 + 0 transcript_id "g3.t1"; gene_id "g3"; scaffold_1_3605535-3607474 AUGUSTUS CDS 1021 1340 1 + 2 transcript_id "g3.t1"; gene_id "g3"; scaffold_1_3605535-3607474 AUGUSTUS stop_codon 1338 1340 . + 0 transcript_id "g3.t1"; gene_id "g3"; # protein sequence = [MALRACGFIVFRRLALPELPPASIEFLLLQTSYGEHHWTPPKGHVDPGEDDLTTALRETKEEAGLGEEHLRVIDGFLH # KLKYEVRGKPKEVLYWLAELRDPKMVVTLSEEHQDYRWSGLDEACALAQYKDLQETLRAAQRHLEATGWR] # end gene g3 ### # # ----- sequence number 4 (length = 4407, name = scaffold_1_3677670-3682076) ----- # # annotation: # Sequence scaffold_1_3677670-3682076 length=4407 scaffold_1_3677670-3682076 database start_codon 601 603 . + 0 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database intron 739 1833 . + . transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database intron 1961 2184 . + . transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database intron 2323 2737 . + . transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database intron 2857 3182 . + . transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database intron 3401 3608 . + . transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 601 738 . + 0 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 1834 1960 . + 0 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 2185 2322 . + 2 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 2738 2856 . + 2 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 3183 3400 . + 0 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database CDS 3609 3807 . + 1 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; scaffold_1_3677670-3682076 database stop_codon 3805 3807 . + 0 transcript_id "g_26-T1.1"; gene_id "g_26-T1"; # Predicted genes for sequence number 4 on both strands # start gene g4 scaffold_1_3677670-3682076 AUGUSTUS gene 1193 3458 0.15 + . g4 scaffold_1_3677670-3682076 AUGUSTUS transcript 1193 3458 0.15 + . g4.t1 scaffold_1_3677670-3682076 AUGUSTUS start_codon 1193 1195 . + 0 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS intron 1280 1833 0.3 + . transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS intron 1961 2184 0.62 + . transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS intron 2323 2737 0.59 + . transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS intron 2857 3182 0.99 + . transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS CDS 1193 1279 0.31 + 0 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS CDS 1834 1960 0.95 + 0 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS CDS 2185 2322 0.62 + 2 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS CDS 2738 2856 0.95 + 2 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS CDS 3183 3458 0.81 + 0 transcript_id "g4.t1"; gene_id "g4"; scaffold_1_3677670-3682076 AUGUSTUS stop_codon 3456 3458 . + 0 transcript_id "g4.t1"; gene_id "g4"; # protein sequence = [MWSHGRVTEVKISGLLRTQWAPATLVELTVFGLGSVAQVVTGQGAFGEYLSINLGFGLGVAMGVHIGRKISGAHMNAA # VSFTMCVFGRLSWKMLPLYILTQLIGSFLAAGTIYTLYYDAIYYYCEGNFTVTGPKATAGIFSTYPAHYLSLHAGFLDQVLGTAMLLLCLMALSDQRN # QPASSGGEPIAVGLLVLLVGISLGSNSGYAINPTRDLGPRIFTAIAGWGPEVFRFVPEVDADVWRIIQVFLS] # end gene g4 ### # # ----- sequence number 5 (length = 1622, name = scaffold_1_5740322-5741943) ----- # # annotation: # Sequence scaffold_1_5740322-5741943 length=1622 scaffold_1_5740322-5741943 database start_codon 601 603 . + 0 transcript_id "g_39-T1.1"; gene_id "g_39-T1"; scaffold_1_5740322-5741943 database intron 757 854 . + . transcript_id "g_39-T1.1"; gene_id "g_39-T1"; scaffold_1_5740322-5741943 database CDS 601 756 . + 0 transcript_id "g_39-T1.1"; gene_id "g_39-T1"; scaffold_1_5740322-5741943 database CDS 855 1022 . + 0 transcript_id "g_39-T1.1"; gene_id "g_39-T1"; scaffold_1_5740322-5741943 database stop_codon 1020 1022 . + 0 transcript_id "g_39-T1.1"; gene_id "g_39-T1"; # Predicted genes for sequence number 5 on both strands # start gene g5 scaffold_1_5740322-5741943 AUGUSTUS gene 1 1022 0.86 + . g5 scaffold_1_5740322-5741943 AUGUSTUS transcript 1 1022 0.86 + . g5.t1 scaffold_1_5740322-5741943 AUGUSTUS intron 1 114 0.97 + . transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS intron 266 634 0.89 + . transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS intron 757 854 1 + . transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS CDS 115 265 0.97 + 0 transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS CDS 635 756 0.89 + 2 transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS CDS 855 1022 1 + 0 transcript_id "g5.t1"; gene_id "g5"; scaffold_1_5740322-5741943 AUGUSTUS stop_codon 1020 1022 . + 0 transcript_id "g5.t1"; gene_id "g5"; # protein sequence = [RLDTEKETIELVHYNPTETCDLPCRVPTDTPRYHFFLYKHSHEGDYLDSVVFIYSMPGYSCSIKERMLYSSCKSRLLE # EVEKDYHLEVVKKLEIDNGDELTEEFLYEEVHPKQHAFKQAFAKPRGPAGKRGNKRLIKGAGESRLDS] # end gene g5 ### # # ----- sequence number 6 (length = 4864, name = scaffold_1_5759279-5764142) ----- # # annotation: # Sequence scaffold_1_5759279-5764142 length=4864 scaffold_1_5759279-5764142 database start_codon 601 603 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database intron 766 3183 . + . transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database intron 3289 3421 . + . transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database intron 3714 3855 . + . transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database intron 3972 4117 . + . transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database CDS 601 765 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database CDS 3184 3288 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database CDS 3422 3713 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database CDS 3856 3971 . + 2 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database CDS 4118 4264 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; scaffold_1_5759279-5764142 database stop_codon 4262 4264 . + 0 transcript_id "g_164-T1.1"; gene_id "g_164-T1"; # Predicted genes for sequence number 6 on both strands # start gene g6 scaffold_1_5759279-5764142 AUGUSTUS gene 649 4264 0.82 + . g6 scaffold_1_5759279-5764142 AUGUSTUS transcript 649 4264 0.82 + . g6.t1 scaffold_1_5759279-5764142 AUGUSTUS start_codon 649 651 . + 0 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS intron 766 3183 0.91 + . transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS intron 3289 3421 1 + . transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS intron 3714 3855 1 + . transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS intron 3972 4117 0.95 + . transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS CDS 649 765 0.94 + 0 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS CDS 3184 3288 1 + 0 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS CDS 3422 3713 1 + 0 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS CDS 3856 3971 0.95 + 2 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS CDS 4118 4264 1 + 0 transcript_id "g6.t1"; gene_id "g6"; scaffold_1_5759279-5764142 AUGUSTUS stop_codon 4262 4264 . + 0 transcript_id "g6.t1"; gene_id "g6"; # protein sequence = [MTWGSSTSSGYYSEDDFDSEFEQYFTARTSFARKPKKEKDEKIEWGKQELSVAEIQQKVKEYNAQINSNLFMNMNKDG # SYTGFIKVQFKLVRPVSVPPPKKGAATQETGGKRAGGVKRRTSFYLPKDTSKHLHISSRTRAREVIEALLKKFTVVDNPGKFALFERSERNDQVYLRK # LPDDERPLILRLCAGPNEKVLSFVLKENETGEVNWDAFSMPELKNFLRILQREEEEHVKQIVQRYALARTRMQEALAGSTPG] # end gene g6 ### # # ----- sequence number 7 (length = 2412, name = scaffold_1_5988430-5990841) ----- # # annotation: # Sequence scaffold_1_5988430-5990841 length=2412 scaffold_1_5988430-5990841 database start_codon 601 603 . + 0 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database intron 713 816 . + . transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database intron 970 1133 . + . transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database intron 1259 1361 . + . transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database intron 1502 1592 . + . transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database CDS 601 712 . + 0 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database CDS 817 969 . + 2 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database CDS 1134 1258 . + 2 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database CDS 1362 1501 . + 0 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database CDS 1593 1812 . + 1 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; scaffold_1_5988430-5990841 database stop_codon 1810 1812 . + 0 transcript_id "g_47-T1.1"; gene_id "g_47-T1"; # Predicted genes for sequence number 7 on both strands # start gene g7 scaffold_1_5988430-5990841 AUGUSTUS gene 837 1812 0.42 + . g7 scaffold_1_5988430-5990841 AUGUSTUS transcript 837 1812 0.42 + . g7.t1 scaffold_1_5988430-5990841 AUGUSTUS start_codon 837 839 . + 0 transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS intron 876 1361 0.73 + . transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS intron 1502 1583 0.63 + . transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS CDS 837 875 0.92 + 0 transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS CDS 1362 1501 0.99 + 0 transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS CDS 1584 1812 0.61 + 1 transcript_id "g7.t1"; gene_id "g7"; scaffold_1_5988430-5990841 AUGUSTUS stop_codon 1810 1812 . + 0 transcript_id "g7.t1"; gene_id "g7"; # protein sequence = [MPPYVAVDTAHYKSCKEQVDAILFLFSFTDRASFDDLTNQIAKSRSEPTERAVRLVIGTNALRFDLFMHTDVTQSEVS # RFQEVLGLPVFCVGGEVSDGLGEVAPLLNCLAEHLWHQDCVAASVTNPSQPGITSMS] # end gene g7 ### # # ----- sequence number 8 (length = 6720, name = scaffold_1_7789225-7795944) ----- # # annotation: # Sequence scaffold_1_7789225-7795944 length=6720 scaffold_1_7789225-7795944 database start_codon 601 603 . + 0 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database intron 628 1044 . + . transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database intron 1080 1432 . + . transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database intron 1542 1805 . + . transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database intron 2017 4345 . + . transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database intron 4496 5992 . + . transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 601 627 . + 0 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 1045 1079 . + 0 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 1433 1541 . + 1 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 1806 2016 . + 0 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 4346 4495 . + 2 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database CDS 5993 6120 . + 2 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; scaffold_1_7789225-7795944 database stop_codon 6118 6120 . + 0 transcript_id "g_64-T1.1"; gene_id "g_64-T1"; # Predicted genes for sequence number 8 on both strands # start gene g8 scaffold_1_7789225-7795944 AUGUSTUS gene 601 2024 0.61 + . g8 scaffold_1_7789225-7795944 AUGUSTUS transcript 601 2024 0.61 + . g8.t1 scaffold_1_7789225-7795944 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS intron 628 1044 0.96 + . transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS intron 1080 1432 0.96 + . transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS intron 1542 1805 1 + . transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS CDS 601 627 0.96 + 0 transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS CDS 1045 1079 1 + 0 transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS CDS 1433 1541 0.96 + 1 transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS CDS 1806 2024 0.66 + 0 transcript_id "g8.t1"; gene_id "g8"; scaffold_1_7789225-7795944 AUGUSTUS stop_codon 2022 2024 . + 0 transcript_id "g8.t1"; gene_id "g8"; # protein sequence = [MEIPAINLKAIVLVHWILTIWGCMAWLPPSYAWGNFSVLAVGVWAIAQRDSIDAVLMFLIGMTATLLTDIVHFGIYYQ # LTEGLSDRNRDTFRFSAGMAILSLLLKPVSCFFVYQMYRERGGDYNVNFGE] # end gene g8 ### # start gene g9 scaffold_1_7789225-7795944 AUGUSTUS gene 3512 4568 0.48 - . g9 scaffold_1_7789225-7795944 AUGUSTUS transcript 3512 4568 0.48 - . g9.t1 scaffold_1_7789225-7795944 AUGUSTUS stop_codon 3512 3514 . - 0 transcript_id "g9.t1"; gene_id "g9"; scaffold_1_7789225-7795944 AUGUSTUS intron 3648 4365 0.58 - . transcript_id "g9.t1"; gene_id "g9"; scaffold_1_7789225-7795944 AUGUSTUS CDS 3512 3647 0.48 - 1 transcript_id "g9.t1"; gene_id "g9"; scaffold_1_7789225-7795944 AUGUSTUS CDS 4366 4568 0.58 - 0 transcript_id "g9.t1"; gene_id "g9"; scaffold_1_7789225-7795944 AUGUSTUS start_codon 4566 4568 . - 0 transcript_id "g9.t1"; gene_id "g9"; # protein sequence = [MRRLERSRVDNTYINTHRHPAKDRPRDGDCKALVLARCTWQQEAECAEEQKSDDKTPSRGRRSEEKRTLERGERREEE # GRVEAGGRGGEETRHREDRDMDRTDSHREVTERR] # end gene g9 ### # # ----- sequence number 9 (length = 5366, name = scaffold_1_9302867-9308232) ----- # # annotation: # Sequence scaffold_1_9302867-9308232 length=5366 scaffold_1_9302867-9308232 database start_codon 601 603 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 604 1161 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 1272 1384 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 1486 1644 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 1782 1894 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 2051 2155 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 2303 2434 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 2543 3049 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 3229 3335 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 3544 3635 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 3747 3973 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 4024 4101 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 4199 4313 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database intron 4467 4619 . + . transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 601 603 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 1162 1271 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 1385 1485 . + 1 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 1645 1781 . + 2 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 1895 2050 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 2156 2302 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 2435 2542 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 3050 3228 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 3336 3543 . + 1 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 3636 3746 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 3974 4023 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 4102 4198 . + 1 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 4314 4466 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database CDS 4620 4766 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; scaffold_1_9302867-9308232 database stop_codon 4764 4766 . + 0 transcript_id "g_73-T1.1"; gene_id "g_73-T1"; # Predicted genes for sequence number 9 on both strands # start gene g10 scaffold_1_9302867-9308232 AUGUSTUS gene 1335 4766 0.18 + . g10 scaffold_1_9302867-9308232 AUGUSTUS transcript 1335 4766 0.18 + . g10.t1 scaffold_1_9302867-9308232 AUGUSTUS start_codon 1335 1337 . + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 1486 1644 0.95 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 1782 1894 1 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 2051 2155 0.99 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 2303 2434 0.58 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 2543 3049 0.57 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 3229 3335 1 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 3544 3635 0.89 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 3747 3973 0.64 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 4024 4101 0.72 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 4199 4313 0.99 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS intron 4467 4619 0.99 + . transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 1335 1485 0.53 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 1645 1781 1 + 2 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 1895 2050 1 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 2156 2302 0.99 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 2435 2542 0.59 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 3050 3228 0.96 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 3336 3543 1 + 1 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 3636 3746 0.89 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 3974 4023 0.72 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 4102 4198 0.72 + 1 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 4314 4466 0.99 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS CDS 4620 4766 1 + 0 transcript_id "g10.t1"; gene_id "g10"; scaffold_1_9302867-9308232 AUGUSTUS stop_codon 4764 4766 . + 0 transcript_id "g10.t1"; gene_id "g10"; # protein sequence = [MYKKNKMELTFPLCIDSGCDNCNEWFHGNCINITEKMAKAIREWYCMPCRDKNPSLEIKYRPKKSREKEPDMERIDKQ # DKRCSTPDYRSERRRGSKVKRSARMCGECEPCRRTEDCAQCDFCKDMKKFGGPNKIRQKCRFRQCVVRARKMLRVKDEEFSLRERRDNSYHRRRRYSE # DYDSEIELYQQYKAAGYDDDMLWPSDEEDGPPFSPVMRKKAVKVKHVKRREKKFDKKKESRRHKQKQKHKDKVRHSDRVDARDVGGLRQCLGPTCIES # ARANSKYCSEDCGMKLAANRIYEILPQRIQQWQQSPCIAEEQGKKQLERIRRDQQNARLRLTDMERRFHELEGIIAKAKQQVVQQDEEVNEGDNEDTD # LQIFCVSCSHPINPKVALRHMERCYAKYESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVSVDEVCGCPLVRNVFEPTGEY # CRVSKRKCNKHYNWEKLRRAEVDLERVRVWYKLDELFEQERNVRTAMTNRAGLLALMLHQTIQHDPLTTDLRSNKDR] # end gene g10 ### # # ----- sequence number 10 (length = 3493, name = scaffold_1_10971211-10974703) ----- # # annotation: # Sequence scaffold_1_10971211-10974703 length=3493 scaffold_1_10971211-10974703 database start_codon 601 603 . + 0 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 866 1069 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 1230 1337 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 1477 1576 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 1711 1820 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 1982 2238 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database intron 2342 2544 . + . transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 601 865 . + 0 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 1070 1229 . + 2 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 1338 1476 . + 1 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 1577 1710 . + 0 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 1821 1981 . + 1 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 2239 2341 . + 2 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database CDS 2545 2893 . + 1 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; scaffold_1_10971211-10974703 database stop_codon 2891 2893 . + 0 transcript_id "g_83-T1.1"; gene_id "g_83-T1"; # Predicted genes for sequence number 10 on both strands # start gene g11 scaffold_1_10971211-10974703 AUGUSTUS gene 601 2893 0.76 + . g11 scaffold_1_10971211-10974703 AUGUSTUS transcript 601 2893 0.76 + . g11.t1 scaffold_1_10971211-10974703 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 866 1069 1 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 1230 1337 1 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 1477 1576 1 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 1711 1820 0.9 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 1982 2238 1 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS intron 2342 2544 1 + . transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 601 865 0.86 + 0 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 1070 1229 1 + 2 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 1338 1476 1 + 1 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 1577 1710 1 + 0 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 1821 1981 0.9 + 1 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 2239 2341 1 + 2 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS CDS 2545 2893 1 + 1 transcript_id "g11.t1"; gene_id "g11"; scaffold_1_10971211-10974703 AUGUSTUS stop_codon 2891 2893 . + 0 transcript_id "g11.t1"; gene_id "g11"; # protein sequence = [MPKVKKSRGGGVEKSVGTLALADQILQGDMVRVPGRVKSRDTREDEEDEYVDERLSRKILEQARIQQEELQTEYGLEP # EVKKKPATVLGPHTNDEDSDEEWPALGEAGAGEGVDAGCATEVLVDAEDEKAIEIFMNKNPPMRRTLADIIMEKITEKQTEVGTVMSEASGRPMPQLD # PRVIEVYRGVNKVLSKYRSGKLPKAFKIIPALSNWEQVLYLTEPETWTAAAMYQATRIFSSNLKERMAQRFYNLVLLPRIRDDIAEYKRLNFHLYNAL # KKALFKPGAWFKGILIPLCESGTCTLREAIIIGSILTKCSIPVLHSSAAMLKLAEMEYNGANSIFLRLLLDKKYAVPFRVLDALVAHFLSFRSEKRAL # PVLWHQSLLTLTQRYKSDLASEQKTALLELLKIQTHPQISAEIRRELQNSESRDLETEMPVMMD] # end gene g11 ### # # ----- sequence number 11 (length = 5507, name = scaffold_1_11539386-11544892) ----- # # annotation: # Sequence scaffold_1_11539386-11544892 length=5507 scaffold_1_11539386-11544892 database start_codon 601 603 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 742 1204 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 1292 1411 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 1545 2402 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 2555 2810 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 2901 3653 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 3804 3915 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 3980 4095 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 4295 4384 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 4488 4573 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database intron 4666 4747 . + . transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 601 741 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 1205 1291 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 1412 1544 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 2403 2554 . + 2 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 2811 2900 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 3654 3803 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 3916 3979 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 4096 4294 . + 2 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 4385 4487 . + 1 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 4574 4665 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database CDS 4748 4907 . + 1 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; scaffold_1_11539386-11544892 database stop_codon 4905 4907 . + 0 transcript_id "g_93-T1.1"; gene_id "g_93-T1"; # Predicted genes for sequence number 11 on both strands # start gene g12 scaffold_1_11539386-11544892 AUGUSTUS gene 601 4907 0.46 + . g12 scaffold_1_11539386-11544892 AUGUSTUS transcript 601 4907 0.46 + . g12.t1 scaffold_1_11539386-11544892 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 742 1204 0.92 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 1292 1411 0.96 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 1545 2402 0.57 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 2555 2810 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 2901 3653 0.93 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 3804 3915 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 3980 4095 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 4295 4384 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 4488 4573 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS intron 4666 4747 1 + . transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 601 741 0.94 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 1205 1291 0.92 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 1412 1544 0.99 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 2403 2554 1 + 2 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 2811 2900 1 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 3654 3803 1 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 3916 3979 1 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 4096 4294 1 + 2 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 4385 4487 1 + 1 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 4574 4665 1 + 0 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS CDS 4748 4907 1 + 1 transcript_id "g12.t1"; gene_id "g12"; scaffold_1_11539386-11544892 AUGUSTUS stop_codon 4905 4907 . + 0 transcript_id "g12.t1"; gene_id "g12"; # protein sequence = [MKIEEVKSTTKTQRIASHSHVKGLGLDEAGNAKQSASGLVGQETAREACGIIVELIRSKKMAGRAVLLAGPPGTGKTA # LALAMAQELGNKVPFCPMVGSEVYSSEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTGKGTKQLKLDPSI # YESLQKERVEVGDVIYIEANSGAVKRQGRCDTFATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDIANARPQGGQDILSMMGQLMKPKKTEITDK # LRTEINKVVNRYIDQGVAELVPGVLFVDEVHMLDIECFTYLHRALESTIAPIVVFASNRGNCLIRGTEDISSPHGIPLDLLDRVMIIRTMLYTLQEMK # QIIKIRAQTEGINISDEALTHLAETGNKTTLRYAVQLMTPANLLGRVQGKEGVEREQIEEINELFYDAKSSAKILQDQQHKYMK] # end gene g12 ### # # ----- sequence number 12 (length = 4742, name = scaffold_1_11683633-11688374) ----- # # annotation: # Sequence scaffold_1_11683633-11688374 length=4742 scaffold_1_11683633-11688374 database start_codon 601 603 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 616 1391 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 1444 1641 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 1743 1826 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 1909 2002 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 2062 2239 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 2286 2393 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 2449 2619 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 2747 2978 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 3145 3253 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 3292 3407 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 3555 3868 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database intron 3969 4131 . + . transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 601 615 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 1392 1443 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 1642 1742 . + 2 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 1827 1908 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 2003 2061 . + 2 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 2240 2285 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 2394 2448 . + 2 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 2620 2746 . + 1 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 2979 3144 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 3254 3291 . + 2 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 3408 3554 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 3869 3968 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database CDS 4132 4142 . + 2 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; scaffold_1_11683633-11688374 database stop_codon 4140 4142 . + 0 transcript_id "g_97-T1.1"; gene_id "g_97-T1"; # Predicted genes for sequence number 12 on both strands # start gene g13 scaffold_1_11683633-11688374 AUGUSTUS gene 1671 4030 0.13 + . g13 scaffold_1_11683633-11688374 AUGUSTUS transcript 1671 4030 0.13 + . g13.t1 scaffold_1_11683633-11688374 AUGUSTUS start_codon 1671 1673 . + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 1743 1826 1 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 1909 2002 0.47 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 2062 2239 0.99 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 2286 2393 0.99 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 2449 2619 0.99 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 2747 2978 1 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 3201 3407 0.75 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS intron 3555 3868 1 + . transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 1671 1742 0.56 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 1827 1908 0.47 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 2003 2061 1 + 2 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 2240 2285 0.99 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 2394 2448 0.99 + 2 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 2620 2746 0.99 + 1 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 2979 3200 0.75 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 3408 3554 1 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS CDS 3869 4030 0.71 + 0 transcript_id "g13.t1"; gene_id "g13"; scaffold_1_11683633-11688374 AUGUSTUS stop_codon 4028 4030 . + 0 transcript_id "g13.t1"; gene_id "g13"; # protein sequence = [MKSHRCYDLVPTSSKLVVFDTSLQVKKAFFALVSNGVRAAPLWDSKKQCFVGMLTITDFINILHRYYKSPLVQIYELE # EHKIETWRELYLQDSFKPLVSISPNASLYDAVSSLLKNKIHRLPVIDPLTGNTLYILTHKRILKFLKLFISEMPKPAFLGRTLEELGIGTFQKIAVVR # SDTPIYTALGIFVEQRVSALPVVDDNGEWGEKRELEGHSPLAGQLNLAAEKTYNNLDVTVTKALQHRSQYFEGVLTCNRRDTLEAIINRLVEAEVHRL # VVVDEQEVVMGIVSLSDILQALVLTNGDEGENTALPVHSAVIADMIDTR] # end gene g13 ### # # ----- sequence number 13 (length = 3116, name = scaffold_1_12389564-12392679) ----- # # annotation: # Sequence scaffold_1_12389564-12392679 length=3116 scaffold_1_12389564-12392679 database start_codon 601 603 . + 0 transcript_id "g_105-T1.1"; gene_id "g_105-T1"; scaffold_1_12389564-12392679 database intron 1169 2274 . + . transcript_id "g_105-T1.1"; gene_id "g_105-T1"; scaffold_1_12389564-12392679 database CDS 601 1168 . + 0 transcript_id "g_105-T1.1"; gene_id "g_105-T1"; scaffold_1_12389564-12392679 database CDS 2275 2516 . + 2 transcript_id "g_105-T1.1"; gene_id "g_105-T1"; scaffold_1_12389564-12392679 database stop_codon 2514 2516 . + 0 transcript_id "g_105-T1.1"; gene_id "g_105-T1"; # Predicted genes for sequence number 13 on both strands # (none) # # ----- sequence number 14 (length = 3289, name = scaffold_1_12683523-12686811) ----- # # annotation: # Sequence scaffold_1_12683523-12686811 length=3289 scaffold_1_12683523-12686811 database start_codon 601 603 . + 0 transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database intron 643 973 . + . transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database intron 1058 1951 . + . transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database CDS 601 642 . + 0 transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database CDS 974 1057 . + 0 transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database CDS 1952 2689 . + 0 transcript_id "g_111-T1.1"; gene_id "g_111-T1"; scaffold_1_12683523-12686811 database stop_codon 2687 2689 . + 0 transcript_id "g_111-T1.1"; gene_id "g_111-T1"; # Predicted genes for sequence number 14 on both strands # start gene g14 scaffold_1_12683523-12686811 AUGUSTUS gene 1 2689 0.48 + . g14 scaffold_1_12683523-12686811 AUGUSTUS transcript 1 2689 0.48 + . g14.t1 scaffold_1_12683523-12686811 AUGUSTUS intron 1 480 0.61 + . transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS intron 643 973 1 + . transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS intron 1058 2275 0.76 + . transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS CDS 481 642 1 + 0 transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS CDS 974 1057 1 + 0 transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS CDS 2276 2689 0.85 + 0 transcript_id "g14.t1"; gene_id "g14"; scaffold_1_12683523-12686811 AUGUSTUS stop_codon 2687 2689 . + 0 transcript_id "g14.t1"; gene_id "g14"; # protein sequence = [EELQESYKEVVQELSGLEVQRETLLFQVDVLQDALEGVEEMLAEAQREASQTSMELEREREAKKKLEDMVNSLMQEVE # RLKELGSSVDLEDVGESTEDGQSPLSKLHRMVNKTFGQMSSLALGSSPSQEGVFVRPEESQTEGKRDTSPDSNNDTDSISAYEDACADTPELENVFPG # FSGLNGTGLTDGACPSAEEQDGDPTNTIQTSEARNPNDSCIVS] # end gene g14 ### # # ----- sequence number 15 (length = 3323, name = scaffold_1_12837654-12840976) ----- # # annotation: # Sequence scaffold_1_12837654-12840976 length=3323 scaffold_1_12837654-12840976 database start_codon 601 603 . + 0 transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database intron 700 1322 . + . transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database intron 1609 1938 . + . transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database CDS 601 699 . + 0 transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database CDS 1323 1608 . + 0 transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database CDS 1939 2723 . + 2 transcript_id "g_113-T1.1"; gene_id "g_113-T1"; scaffold_1_12837654-12840976 database stop_codon 2721 2723 . + 0 transcript_id "g_113-T1.1"; gene_id "g_113-T1"; # Predicted genes for sequence number 15 on both strands # start gene g15 scaffold_1_12837654-12840976 AUGUSTUS gene 664 2723 0.66 + . g15 scaffold_1_12837654-12840976 AUGUSTUS transcript 664 2723 0.66 + . g15.t1 scaffold_1_12837654-12840976 AUGUSTUS start_codon 664 666 . + 0 transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS intron 700 1322 0.98 + . transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS intron 1609 1938 1 + . transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS CDS 664 699 0.67 + 0 transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS CDS 1323 1608 1 + 0 transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS CDS 1939 2723 0.98 + 2 transcript_id "g15.t1"; gene_id "g15"; scaffold_1_12837654-12840976 AUGUSTUS stop_codon 2721 2723 . + 0 transcript_id "g15.t1"; gene_id "g15"; # protein sequence = [MDYLERRLLAIEDRISLWHEQTNRYASELREFKQQMVGQLEALDKNKETLRMDLDSVGTRVDRVEREMDYLETQNGAL # PCVDVDDKLVEQQVTVVKEKNKAKYAKLSDCRDMISSIKAMKILKRLGGPKGMWTKDMGSSSGKIYIFNGISGDTIHEFASVKDFTSSEGTTLAKSLK # LPSAWQGTGHTIYNNYAYFIKEGEELRVIKYDLQNNTVTDSSVFPVKDHIPVYGLTPETVVDLAADEEGLWAIYATRDNERHISMAKMDANTLDIEQM # WDTPCPRENAEAAFVICGTVYVVYNTKLPSRSRVQCVFDVSDMVTNDDAPLVYFPKRYGSHSSLKYNPLERLVYAWDDGYQILYKLDMKKKLEV] # end gene g15 ### # # ----- sequence number 16 (length = 5431, name = scaffold_1_14179622-14185052) ----- # # annotation: # Sequence scaffold_1_14179622-14185052 length=5431 scaffold_1_14179622-14185052 database start_codon 601 603 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 773 964 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 1100 1660 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 1802 1894 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 1983 2103 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 2237 2311 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 2447 2618 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 2723 2805 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 2931 3084 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 3198 3269 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 3408 3705 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 3809 3926 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 4028 4390 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database intron 4562 4708 . + . transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 601 772 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 965 1099 . + 2 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 1661 1801 . + 2 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 1895 1982 . + 2 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 2104 2236 . + 1 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 2312 2446 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 2619 2722 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 2806 2930 . + 1 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 3085 3197 . + 2 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 3270 3407 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 3706 3808 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 3927 4027 . + 2 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 4391 4561 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database CDS 4709 4831 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; scaffold_1_14179622-14185052 database stop_codon 4829 4831 . + 0 transcript_id "g_127-T1.1"; gene_id "g_127-T1"; # Predicted genes for sequence number 16 on both strands # start gene g16 scaffold_1_14179622-14185052 AUGUSTUS gene 2255 3945 0.07 + . g16 scaffold_1_14179622-14185052 AUGUSTUS transcript 2255 3945 0.07 + . g16.t1 scaffold_1_14179622-14185052 AUGUSTUS start_codon 2255 2257 . + 0 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 2447 2618 0.99 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 2723 2805 0.98 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 2931 3084 0.77 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 3198 3269 0.8 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 3408 3749 0.2 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS intron 3809 3926 0.96 + . transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 2255 2446 0.44 + 0 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 2619 2722 0.99 + 0 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 2806 2930 0.99 + 1 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 3085 3197 0.77 + 2 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 3270 3407 0.8 + 0 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 3750 3808 0.19 + 0 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS CDS 3927 3945 0.19 + 1 transcript_id "g16.t1"; gene_id "g16"; scaffold_1_14179622-14185052 AUGUSTUS stop_codon 3943 3945 . + 0 transcript_id "g16.t1"; gene_id "g16"; # protein sequence = [MNTTDVLDVQDHTYNWFSQVVYFTATFPYVMLGVLLVRGLTLPGAIDGIKFYLYPDPARLADPQVWMDAGTQIFYSYA # ICIGCLTALGSYNKYNNNCYKDCVYLCLLNSGTSFVAGFAIFSVLGFMAYEQGSDISKVAESGPGLAFIAYPRAVAMMPLPQLWAILFFIMIILLGLD # SQFVGLEALMTAISDMYPSFFHVGHRRKLLLLGISAGCFFIGLVMVTEWDDSATLRYTAVFVYRLDLRRRTFL] # end gene g16 ### # # ----- sequence number 17 (length = 4679, name = scaffold_1_15278528-15283206) ----- # # annotation: # Sequence scaffold_1_15278528-15283206 length=4679 scaffold_1_15278528-15283206 database start_codon 601 603 . + 0 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 746 1044 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 1251 1364 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 1511 1626 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 1847 3265 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 3375 3499 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 3669 3790 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database intron 3869 3982 . + . transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 601 745 . + 0 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 1045 1250 . + 2 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 1365 1510 . + 0 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 1627 1846 . + 1 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 3266 3374 . + 0 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 3500 3668 . + 2 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 3791 3868 . + 1 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database CDS 3983 4079 . + 1 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; scaffold_1_15278528-15283206 database stop_codon 4077 4079 . + 0 transcript_id "g_136-T1.1"; gene_id "g_136-T1"; # Predicted genes for sequence number 17 on both strands # start gene g17 scaffold_1_15278528-15283206 AUGUSTUS gene 601 4079 0.82 + . g17 scaffold_1_15278528-15283206 AUGUSTUS transcript 601 4079 0.82 + . g17.t1 scaffold_1_15278528-15283206 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 746 1044 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 1251 1364 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 1511 1626 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 1847 2609 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 2756 2871 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 3092 3265 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 3375 3499 1 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 3669 3790 0.99 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS intron 3869 3982 0.99 + . transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 601 745 0.83 + 0 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 1045 1250 1 + 2 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 1365 1510 1 + 0 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 1627 1846 1 + 1 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 2610 2755 1 + 0 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 2872 3091 1 + 1 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 3266 3374 1 + 0 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 3500 3668 1 + 2 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 3791 3868 0.99 + 1 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS CDS 3983 4079 1 + 1 transcript_id "g17.t1"; gene_id "g17"; scaffold_1_15278528-15283206 AUGUSTUS stop_codon 4077 4079 . + 0 transcript_id "g17.t1"; gene_id "g17"; # protein sequence = [MPLENLEEEGLPKNPDLRIAQMKFLLTMDGHRQDAKVKTELMDSIKENNMAPYYEGLCKELKWQLDTDLQSKMKKANE # EELKRLDDVLEDAEKNLGESEIRDAMMAKAEYLIRIGDKEGALTAFRKTYEKTVALGHRLDIVFYLLRIGLFYMDSDLITRNTEKAKSLIEEGGDWDR # RNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVCMIALKRPDLREKEGALTAFRKTYEKTVALGHRLDIVFYLLRIGLFYM # DSDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVCMIALKRPDLREKVIKGAEILEVL # HSLPAVRQYLFSLYECRYSVFFQSLATVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVSTEFIDQELSRFIAAGRLHCKID # KVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM] # end gene g17 ### # # ----- sequence number 18 (length = 4685, name = scaffold_1_15878387-15883071) ----- # # annotation: # Sequence scaffold_1_15878387-15883071 length=4685 scaffold_1_15878387-15883071 database start_codon 601 603 . + 0 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database intron 641 2262 . + . transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database intron 2319 2931 . + . transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database intron 3039 3922 . + . transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database CDS 601 640 . + 0 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database CDS 2263 2318 . + 2 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database CDS 2932 3038 . + 0 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database CDS 3923 4085 . + 1 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; scaffold_1_15878387-15883071 database stop_codon 4083 4085 . + 0 transcript_id "g_140-T1.1"; gene_id "g_140-T1"; # Predicted genes for sequence number 18 on both strands # start gene g18 scaffold_1_15878387-15883071 AUGUSTUS gene 2043 4085 0.56 + . g18 scaffold_1_15878387-15883071 AUGUSTUS transcript 2043 4085 0.56 + . g18.t1 scaffold_1_15878387-15883071 AUGUSTUS start_codon 2043 2045 . + 0 transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS intron 2074 2262 0.57 + . transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS intron 2319 2931 1 + . transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS intron 3039 3922 0.99 + . transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS CDS 2043 2073 0.57 + 0 transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS CDS 2263 2318 0.96 + 2 transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS CDS 2932 3038 1 + 0 transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS CDS 3923 4085 1 + 1 transcript_id "g18.t1"; gene_id "g18"; scaffold_1_15878387-15883071 AUGUSTUS stop_codon 4083 4085 . + 0 transcript_id "g18.t1"; gene_id "g18"; # protein sequence = [MKAAEVVKVTPDRCKEVQQIRDQHPNKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFL # LVNQHSMVSVSTPISEIYEQERDEDGFLYMVYASQETFGC] # end gene g18 ### # # ----- sequence number 19 (length = 2580, name = scaffold_1_18335565-18338144) ----- # # annotation: # Sequence scaffold_1_18335565-18338144 length=2580 scaffold_1_18335565-18338144 database start_codon 601 603 . + 0 transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database intron 621 1076 . + . transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database intron 1244 1465 . + . transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database CDS 601 620 . + 0 transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database CDS 1077 1243 . + 1 transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database CDS 1466 1980 . + 2 transcript_id "g_148-T1.1"; gene_id "g_148-T1"; scaffold_1_18335565-18338144 database stop_codon 1978 1980 . + 0 transcript_id "g_148-T1.1"; gene_id "g_148-T1"; # Predicted genes for sequence number 19 on both strands # start gene g19 scaffold_1_18335565-18338144 AUGUSTUS gene 925 1980 0.61 + . g19 scaffold_1_18335565-18338144 AUGUSTUS transcript 925 1980 0.61 + . g19.t1 scaffold_1_18335565-18338144 AUGUSTUS start_codon 925 927 . + 0 transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS intron 939 1076 0.61 + . transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS intron 1244 1465 1 + . transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS CDS 925 938 0.61 + 0 transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS CDS 1077 1243 0.81 + 1 transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS CDS 1466 1980 0.99 + 2 transcript_id "g19.t1"; gene_id "g19"; scaffold_1_18335565-18338144 AUGUSTUS stop_codon 1978 1980 . + 0 transcript_id "g19.t1"; gene_id "g19"; # protein sequence = [MGVDWAIFPVAPTKMVARGATMQDNEERGDSCYRHPIATLWNPTKDLRCITTTFQYLHTSGWYWGSMSVSQAWDALQK # VSEGTFLVRDSSHPLYMLTLSVKTSCGPTNVRVEYSRGRFRLDSTSPGIPHLKSFPDILSLIQHYVGSCQKETGQRAEPQEDSVLKAKLLPPQPTTID # SPVLLMLKRPLHRPQAFPSLQHLTRLAINRTTDCPAQLPLPCPLVCYLQEYPFRL] # end gene g19 ### # # ----- sequence number 20 (length = 2896, name = scaffold_2_884201-887096) ----- # # annotation: # Sequence scaffold_2_884201-887096 length=2896 scaffold_2_884201-887096 database start_codon 601 603 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database intron 609 689 . + . transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database intron 727 846 . + . transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database intron 976 1105 . + . transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database intron 1196 1280 . + . transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database intron 1458 2200 . + . transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 601 608 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 690 726 . + 1 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 847 975 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 1106 1195 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 1281 1457 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database CDS 2201 2296 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; scaffold_2_884201-887096 database stop_codon 2294 2296 . + 0 transcript_id "g_1180-T1.1"; gene_id "g_1180-T1"; # Predicted genes for sequence number 20 on both strands # start gene g20 scaffold_2_884201-887096 AUGUSTUS gene 697 2296 0.25 + . g20 scaffold_2_884201-887096 AUGUSTUS transcript 697 2296 0.25 + . g20.t1 scaffold_2_884201-887096 AUGUSTUS start_codon 697 699 . + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS intron 727 846 0.79 + . transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS intron 976 1280 0.52 + . transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS intron 1458 2023 0.78 + . transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS intron 2084 2200 0.76 + . transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS CDS 697 726 0.69 + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS CDS 847 975 0.85 + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS CDS 1281 1457 1 + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS CDS 2024 2083 0.76 + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS CDS 2201 2296 0.98 + 0 transcript_id "g20.t1"; gene_id "g20"; scaffold_2_884201-887096 AUGUSTUS stop_codon 2294 2296 . + 0 transcript_id "g20.t1"; gene_id "g20"; # protein sequence = [MSMSRKHNIKSCMLGVAKDLLEAEAKEKVEERKRYMEENCPPLEMPHSKDELMVKDLNIKIIDLKGKFKKPALKKVRM # SADAMLKALLGSKHTVNMDLRSNLKQVKKEVKEEPSDLLAPVQGVPCLWPESYWDKQLRDVGDWRKNIEDKSDMGGRKKMFESDA] # end gene g20 ### # # ----- sequence number 21 (length = 6315, name = scaffold_2_1489662-1495976) ----- # # annotation: # Sequence scaffold_2_1489662-1495976 length=6315 scaffold_2_1489662-1495976 database start_codon 601 603 . + 0 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database intron 612 1080 . + . transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database intron 1254 1847 . + . transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database intron 1989 2129 . + . transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database intron 2186 2276 . + . transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database intron 3277 5587 . + . transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 601 611 . + 0 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 1081 1253 . + 1 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 1848 1988 . + 2 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 2130 2185 . + 2 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 2277 3276 . + 0 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database CDS 5588 5715 . + 2 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; scaffold_2_1489662-1495976 database stop_codon 5713 5715 . + 0 transcript_id "g_1184-T1.1"; gene_id "g_1184-T1"; # Predicted genes for sequence number 21 on both strands # start gene g21 scaffold_2_1489662-1495976 AUGUSTUS gene 1 5715 0.48 + . g21 scaffold_2_1489662-1495976 AUGUSTUS transcript 1 5715 0.48 + . g21.t1 scaffold_2_1489662-1495976 AUGUSTUS intron 1 411 0.8 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 612 1080 1 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 1254 1847 0.99 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 1989 2129 0.99 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 2186 2276 0.99 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 3277 3706 0.65 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS intron 3857 5587 0.65 + . transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 412 611 0.8 + 0 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 1081 1253 1 + 1 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 1848 1988 0.99 + 2 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 2130 2185 0.99 + 2 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 2277 3276 0.97 + 0 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 3707 3856 0.65 + 2 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS CDS 5588 5715 0.92 + 2 transcript_id "g21.t1"; gene_id "g21"; scaffold_2_1489662-1495976 AUGUSTUS stop_codon 5713 5715 . + 0 transcript_id "g21.t1"; gene_id "g21"; # protein sequence = [LLGYSETPVNLQVFIGTADDRFLRPHAFYQVHRVTGKTVSTACQETVITGTKVLEIPLLPEGSMSSSIDCAGILKLRN # SDIELRKGETDIGRKNTRVRMAFRVQIPQPGGKALCLQAASVPIECSQRSAQELPQVDSFSPASCSVNGGGELVITGSNISPDSKVIFVEKGPDGRTQ # WEVDANVIHEKSNSSSIVVDIPAYHSKNVTSAVQVQFYVSNGKRKRSQTQGFTYLGAATHQYSAVVDSNVVTKHMKQEHNDFDYVTHNPSTCYPISTQ # LSPIDQSFPQDTPFYGSPGDPVPCGRLGQPGSYSLGSSPQHPSLYLQGYLTNMQAVDPKPASLTRPSYNATPCSVPYSHQPCFVMASCGRQFQPQSQT # QATVAASSRREGMTYQSALQPQLASSSPHTTNQARAHAQGSTLSYHCSHTGSDQAEASRRPVKYHPTRDVSSSYSPSPAAPACNIPLSAPPGGSSLRH # QAPSLGPPNRTSLASDPHKTQNPAPHSLFSSSGDRVSVKQEPVEKLHEITLDDESSVLEQGNIKNPQNSSPRGPEFDTPEVESLVWCRNKSRLQLSVG # TWTPHLNEIIYRDISQIGGVAEAVVPGQDHYGWDQQAGETAQFNGLG] # end gene g21 ### # # ----- sequence number 22 (length = 5408, name = scaffold_2_3337942-3343349) ----- # # annotation: # Sequence scaffold_2_3337942-3343349 length=5408 scaffold_2_3337942-3343349 database start_codon 601 603 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 633 996 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 1162 1249 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 1451 1584 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 1727 1809 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 1944 2428 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 2583 2670 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 2776 2964 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 3064 3192 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 3337 3545 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 3624 3706 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 3855 4151 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 4302 4419 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database intron 4493 4624 . + . transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 601 632 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 997 1161 . + 1 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 1250 1450 . + 1 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 1585 1726 . + 1 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 1810 1943 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 2429 2582 . + 1 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 2671 2775 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 2965 3063 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 3193 3336 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 3546 3623 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 3707 3854 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 4152 4301 . + 2 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 4420 4492 . + 2 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database CDS 4625 4808 . + 1 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; scaffold_2_3337942-3343349 database stop_codon 4806 4808 . + 0 transcript_id "g_1188-T1.1"; gene_id "g_1188-T1"; # Predicted genes for sequence number 22 on both strands # start gene g22 scaffold_2_3337942-3343349 AUGUSTUS gene 1 4808 0.39 + . g22 scaffold_2_3337942-3343349 AUGUSTUS transcript 1 4808 0.39 + . g22.t1 scaffold_2_3337942-3343349 AUGUSTUS intron 1 105 0.87 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 254 349 0.98 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 474 996 0.98 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 1162 1249 0.98 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 1451 1584 0.9 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 1727 1809 1 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 1944 2428 0.97 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 2583 2670 0.55 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 2776 2964 0.99 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 3064 3192 0.99 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 3337 3545 0.89 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 3624 3706 0.94 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 3855 4151 1 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 4302 4419 1 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS intron 4493 4624 1 + . transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 106 253 0.88 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 350 473 0.98 + 2 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 997 1161 1 + 1 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 1250 1450 0.88 + 1 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 1585 1726 1 + 1 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 1810 1943 1 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 2429 2582 0.54 + 1 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 2671 2775 1 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 2965 3063 0.99 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 3193 3336 0.95 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 3546 3623 0.9 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 3707 3854 1 + 0 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 4152 4301 1 + 2 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 4420 4492 1 + 2 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS CDS 4625 4808 1 + 1 transcript_id "g22.t1"; gene_id "g22"; scaffold_2_3337942-3343349 AUGUSTUS stop_codon 4806 4808 . + 0 transcript_id "g22.t1"; gene_id "g22"; # protein sequence = [PEDHWKAELVADEYLGTSGDRVKIRNGFTQLIGDFLFTIPAIKTANAHRDVGAPVYVYELQEPPTMLAKLKPSFVGVD # HADDLIYVFGLGRNPNGPGLSQWPQYGAEGDYLAIGLEQVTGQHLRRERFIFHTQTLPKKIQQGAEKMSRGSPVVQTKLGGLRGEYVDVKGKETLVHA # YLGVPFAKPPLGPLRLAPPQPTEGWEGLRDATKQPFMCHQDKDIMLSLLSKIFSTTAEFPQTSEDCLYLNIYTPAKPAQDAKLPVMVWIHGGGFTMGS # ASMFDGSALAAYQDVVVVLVQYRLGLLGFLSTGDHHIPGNLGLMDQVEGLRWVQEHIHNFGGDPGAVTIFGESAGGVSVSLLLLSPMSTGLFHRAIAQ # SGTAAMDAILTHDPLPMAKMAANSSGCGITSTKMIAECMQALGEEDILTLAKDMTLRFPVTVDGHFLPKPVEELFQNQQLHKVPFMTGITNDEGGWLL # PSFLAPPNWTEGMDREEVTPILPLIFPDPEDHWKVELVADEYLGTSGDRVKIRNGFTQLIGDFLFTIPAIKTANAHRDADSAVYLYEYRYVASVLKDM # RPSFVGSDHGDDIFTMFGLCFTTAHVKLLNQCTKEDEEICQTMMDYWGNFARRGNPNGAALSQWPQYGAEGDYLAIGLEQVTGQHLRRERFIFHTQTL # PKKIQQGAEKKERVEL] # end gene g22 ### # # ----- sequence number 23 (length = 5581, name = scaffold_2_3988873-3994453) ----- # # annotation: # Sequence scaffold_2_3988873-3994453 length=5581 scaffold_2_3988873-3994453 database start_codon 601 603 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 783 887 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 943 1037 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 1531 1995 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 2124 2250 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 2362 3516 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 3605 3714 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 3828 3943 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 4066 4567 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database intron 4668 4918 . + . transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 601 782 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 888 942 . + 1 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 1038 1530 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 1996 2123 . + 2 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 2251 2361 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 3517 3604 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 3715 3827 . + 2 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 3944 4065 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 4568 4667 . + 1 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database CDS 4919 4981 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; scaffold_2_3988873-3994453 database stop_codon 4979 4981 . + 0 transcript_id "g_1192-T1.1"; gene_id "g_1192-T1"; # Predicted genes for sequence number 23 on both strands # start gene g23 scaffold_2_3988873-3994453 AUGUSTUS gene 601 4981 0.45 + . g23 scaffold_2_3988873-3994453 AUGUSTUS transcript 601 4981 0.45 + . g23.t1 scaffold_2_3988873-3994453 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 783 887 0.98 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 943 1037 0.92 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 1531 1995 1 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 2124 2250 1 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 2362 3516 0.99 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 3605 3714 1 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 3828 3943 1 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 4066 4567 1 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS intron 4668 4918 0.88 + . transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 601 782 0.96 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 888 942 0.98 + 1 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 1038 1530 0.56 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 1996 2123 1 + 2 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 2251 2361 1 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 3517 3604 1 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 3715 3827 1 + 2 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 3944 4065 1 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 4568 4667 0.9 + 1 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS CDS 4919 4981 0.88 + 0 transcript_id "g23.t1"; gene_id "g23"; scaffold_2_3988873-3994453 AUGUSTUS stop_codon 4979 4981 . + 0 transcript_id "g23.t1"; gene_id "g23"; # protein sequence = [MDGELENPEPSSPLWDVEEPETPGPLNTAVVLGENDVLYSDMVSPGRNPNNSPFIIDETPSPPCHRRRHRYNGAESTA # TAALVSPPSAGITCVTPSAHFSKRRKLSVPATSLRGETNPTSWRTNGFVPASSLLKTGPLLGSWLEPPRPPPSSLLPSQSSPGSVAASEGGLAGEGFY # RNTQEPAGSPTVDPRHCQRGKRTSKQANATKSSSLGHSSTVDNTDATSPVSTGKSRLRKPKKLVLPTTQEQLSKHEEIVISDDDSSDVIIQAMVHSVQ # MEEDEAFARSLQEQFDREEQHQQQHQQQQQNRQEVVLSLRPQLHHHNYSYDPHFAMGWMSPWASAANHAAFSPLLAGFDGVGRRTRARSHGRSRPRNA # HPPLAMFDPLNHIGDDYEALLAFEDHQGAVVAKSSLSKRELESLPTKTYNPAHSAGKTQCQICFSDYAEGEELRMLPCLHDYHVQCIDRWLKESTTCP # ICRADVSEMRANMV] # end gene g23 ### # # ----- sequence number 24 (length = 3073, name = scaffold_2_4178426-4181498) ----- # # annotation: # Sequence scaffold_2_4178426-4181498 length=3073 scaffold_2_4178426-4181498 database start_codon 601 603 . + 0 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database intron 705 1679 . + . transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database intron 1792 1893 . + . transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database intron 1999 2140 . + . transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database CDS 601 704 . + 0 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database CDS 1680 1791 . + 1 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database CDS 1894 1998 . + 0 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database CDS 2141 2473 . + 0 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; scaffold_2_4178426-4181498 database stop_codon 2471 2473 . + 0 transcript_id "g_1195-T1.1"; gene_id "g_1195-T1"; # Predicted genes for sequence number 24 on both strands # start gene g24 scaffold_2_4178426-4181498 AUGUSTUS gene 1 2473 0.93 + . g24 scaffold_2_4178426-4181498 AUGUSTUS transcript 1 2473 0.93 + . g24.t1 scaffold_2_4178426-4181498 AUGUSTUS intron 1 92 1 + . transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS intron 299 388 0.94 + . transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS intron 566 652 1 + . transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS intron 705 1679 1 + . transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS intron 1792 2140 0.99 + . transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS CDS 93 298 0.94 + 1 transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS CDS 389 565 0.94 + 2 transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS CDS 653 704 1 + 2 transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS CDS 1680 1791 1 + 1 transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS CDS 2141 2473 1 + 0 transcript_id "g24.t1"; gene_id "g24"; scaffold_2_4178426-4181498 AUGUSTUS stop_codon 2471 2473 . + 0 transcript_id "g24.t1"; gene_id "g24"; # protein sequence = [WLAGLWNVVVVPRVQEAIVSRVTVKRSLAQRPAPGDQGHGRGEQAVVNAALSILVNKAVLHGCPLAYHEIARQLLEFR # GGTFPALSIGSCKGGGVRKGRDCSMWRRASTSPRKKGRSVMNWSGSLREGSLSNTDVRFVTNGNGRRLVDGDLVHLSFGSDDDSDLIRELQTMCTSQS # EPDIGKTSSRHANQSPANAAQSQERRSTPRPKSQLPVPSSRGQSPRPSSSTISTTSPKQAHGNRNAAETRSEPSSKTRHVLPNNNNNNNIIIQNNQQE # DLWILHGGLHENSNNNKF] # end gene g24 ### # # ----- sequence number 25 (length = 3168, name = scaffold_2_5200659-5203826) ----- # # annotation: # Sequence scaffold_2_5200659-5203826 length=3168 scaffold_2_5200659-5203826 database start_codon 601 603 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database intron 700 1325 . + . transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database intron 1398 1705 . + . transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database intron 1805 2454 . + . transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database CDS 601 699 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database CDS 1326 1397 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database CDS 1706 1804 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database CDS 2455 2568 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; scaffold_2_5200659-5203826 database stop_codon 2566 2568 . + 0 transcript_id "g_1199-T1.1"; gene_id "g_1199-T1"; # Predicted genes for sequence number 25 on both strands # start gene g25 scaffold_2_5200659-5203826 AUGUSTUS gene 601 2908 0.41 + . g25 scaffold_2_5200659-5203826 AUGUSTUS transcript 601 2908 0.41 + . g25.t1 scaffold_2_5200659-5203826 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS intron 700 1325 0.97 + . transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS intron 1398 1705 0.7 + . transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS intron 1773 2543 0.44 + . transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS CDS 601 699 0.98 + 0 transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS CDS 1326 1397 0.97 + 0 transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS CDS 1706 1772 0.44 + 0 transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS CDS 2544 2908 0.7 + 2 transcript_id "g25.t1"; gene_id "g25"; scaffold_2_5200659-5203826 AUGUSTUS stop_codon 2906 2908 . + 0 transcript_id "g25.t1"; gene_id "g25"; # protein sequence = [MGDKPIWEQIGSSFVQHYYQLFDTDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSTLPFTKIAHSITAQDHQPTPD # SCWLCTTLDKPRPPHPRGGKEDLGGRGRSGADLQPPPPFDLVCTRLDRTTTDTRLQSQNPTWAGSGLTNRNNTCSFAESWLTSVSASLLTCMMLGASL # CTPDQDDTNYSSFTGAYQSTGLCC] # end gene g25 ### # # ----- sequence number 26 (length = 1851, name = scaffold_2_5716433-5718283) ----- # # annotation: # Sequence scaffold_2_5716433-5718283 length=1851 scaffold_2_5716433-5718283 database start_codon 601 603 . + 0 transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database intron 766 932 . + . transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database intron 1093 1237 . + . transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database CDS 601 765 . + 0 transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database CDS 933 1092 . + 0 transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database CDS 1238 1251 . + 2 transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; scaffold_2_5716433-5718283 database stop_codon 1249 1251 . + 0 transcript_id "g_1202-T1.1"; gene_id "g_1202-T1"; # Predicted genes for sequence number 26 on both strands # start gene g26 scaffold_2_5716433-5718283 AUGUSTUS gene 1 1756 0.44 + . g26 scaffold_2_5716433-5718283 AUGUSTUS transcript 1 1756 0.44 + . g26.t1 scaffold_2_5716433-5718283 AUGUSTUS intron 1 171 0.9 + . transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS intron 229 324 0.72 + . transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS intron 407 564 0.72 + . transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS intron 766 932 0.96 + . transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS intron 1093 1727 0.68 + . transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS CDS 172 228 0.81 + 1 transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS CDS 325 406 0.72 + 1 transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS CDS 565 765 0.7 + 0 transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS CDS 933 1092 1 + 0 transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS CDS 1728 1756 0.61 + 2 transcript_id "g26.t1"; gene_id "g26"; scaffold_2_5716433-5718283 AUGUSTUS stop_codon 1754 1756 . + 0 transcript_id "g26.t1"; gene_id "g26"; # protein sequence = [VLVVFVGEEDITTYNTEEGKILFVQISSRQSGEQTSQYKVSVCLKKSPPDDQRNVAGFMHAVLGLLLPLAYEYDPGLV # VLARSPGCGVGEAAWAQLTSLLQGLARGHTLVLLQVGEEKALRGTAASLQGDPVPSLGPLGPPPPEDVETVERQRQRLQTSWKLLQTTAIDWRCGVR] # end gene g26 ### # # ----- sequence number 27 (length = 2485, name = scaffold_2_7880495-7882979) ----- # # annotation: # Sequence scaffold_2_7880495-7882979 length=2485 scaffold_2_7880495-7882979 database start_codon 601 603 . + 0 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database intron 710 872 . + . transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database intron 961 1136 . + . transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database intron 1223 1473 . + . transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database intron 1584 1753 . + . transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database CDS 601 709 . + 0 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database CDS 873 960 . + 2 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database CDS 1137 1222 . + 1 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database CDS 1474 1583 . + 2 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database CDS 1754 1885 . + 0 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; scaffold_2_7880495-7882979 database stop_codon 1883 1885 . + 0 transcript_id "g_1215-T1.1"; gene_id "g_1215-T1"; # Predicted genes for sequence number 27 on both strands # start gene g27 scaffold_2_7880495-7882979 AUGUSTUS gene 682 1885 0.59 + . g27 scaffold_2_7880495-7882979 AUGUSTUS transcript 682 1885 0.59 + . g27.t1 scaffold_2_7880495-7882979 AUGUSTUS start_codon 682 684 . + 0 transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS intron 710 1156 0.65 + . transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS intron 1223 1473 0.79 + . transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS intron 1584 1753 1 + . transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS CDS 682 709 0.9 + 0 transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS CDS 1157 1222 0.69 + 2 transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS CDS 1474 1583 0.93 + 2 transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS CDS 1754 1885 1 + 0 transcript_id "g27.t1"; gene_id "g27"; scaffold_2_7880495-7882979 AUGUSTUS stop_codon 1883 1885 . + 0 transcript_id "g27.t1"; gene_id "g27"; # protein sequence = [MKSTGSTPPGNCSTGSKTNIDDCVQAPVPPTADASDGVYASIPGFPHNQPRNVENTEEYQALYDYVAQGDGELTLSAG # ETVMVLDQGVDGWWTVKRNDQSGLVPGSYLARH] # end gene g27 ### # # ----- sequence number 28 (length = 1637, name = scaffold_2_8874176-8875812) ----- # # annotation: # Sequence scaffold_2_8874176-8875812 length=1637 scaffold_2_8874176-8875812 database start_codon 601 603 . + 0 transcript_id "g_1223-T1.1"; gene_id "g_1223-T1"; scaffold_2_8874176-8875812 database intron 669 766 . + . transcript_id "g_1223-T1.1"; gene_id "g_1223-T1"; scaffold_2_8874176-8875812 database CDS 601 668 . + 0 transcript_id "g_1223-T1.1"; gene_id "g_1223-T1"; scaffold_2_8874176-8875812 database CDS 767 1037 . + 1 transcript_id "g_1223-T1.1"; gene_id "g_1223-T1"; scaffold_2_8874176-8875812 database stop_codon 1035 1037 . + 0 transcript_id "g_1223-T1.1"; gene_id "g_1223-T1"; # Predicted genes for sequence number 28 on both strands # start gene g28 scaffold_2_8874176-8875812 AUGUSTUS gene 1 1037 0.62 + . g28 scaffold_2_8874176-8875812 AUGUSTUS transcript 1 1037 0.62 + . g28.t1 scaffold_2_8874176-8875812 AUGUSTUS intron 1 203 0.65 + . transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS intron 321 441 0.63 + . transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS intron 669 766 1 + . transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS CDS 204 320 0.64 + 0 transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS CDS 442 668 0.93 + 0 transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS CDS 767 1037 1 + 1 transcript_id "g28.t1"; gene_id "g28"; scaffold_2_8874176-8875812 AUGUSTUS stop_codon 1035 1037 . + 0 transcript_id "g28.t1"; gene_id "g28"; # protein sequence = [GLKRVGLGERVKVIIKELPVAYNRVQQVIGDIWKILHPKFAIHLGIATGSRGILLEQTGRNHGYGDRDVCGSCPVNLN # CIDGGPAKLDSIVDMRALSKQLKKAGKDINYSRDAGRYLCDYAYYCSLFHGQGRAVFIHVPASGSLSSPDRLVPLLQIIIQTLLQTLDSYSPPRSFLS # PSSSPSSAIACSSIPSAQIIKHTGAGLQ] # end gene g28 ### # # ----- sequence number 29 (length = 8499, name = scaffold_2_14529680-14538178) ----- # # annotation: # Sequence scaffold_2_14529680-14538178 length=8499 scaffold_2_14529680-14538178 database start_codon 601 603 . + 0 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 878 2263 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 2339 3318 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 3622 5129 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 5248 5482 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 5763 6279 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 6415 7333 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database intron 7447 7886 . + . transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 601 877 . + 0 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 2264 2338 . + 2 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 3319 3621 . + 2 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 5130 5247 . + 2 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 5483 5762 . + 1 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 6280 6414 . + 0 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 7334 7446 . + 0 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database CDS 7887 7899 . + 1 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; scaffold_2_14529680-14538178 database stop_codon 7897 7899 . + 0 transcript_id "g_1257-T1.1"; gene_id "g_1257-T1"; # Predicted genes for sequence number 29 on both strands # start gene g29 scaffold_2_14529680-14538178 AUGUSTUS gene 1 7985 0.32 + . g29 scaffold_2_14529680-14538178 AUGUSTUS transcript 1 7985 0.32 + . g29.t1 scaffold_2_14529680-14538178 AUGUSTUS intron 1 562 0.88 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 878 2263 0.69 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 2339 3318 1 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 3716 4568 0.72 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 4742 5129 0.85 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 5248 5482 0.99 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 5763 6279 0.99 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 6415 7333 1 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 7447 7549 0.88 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS intron 7563 7886 0.89 + . transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 563 877 0.78 + 2 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 2264 2338 1 + 2 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 3319 3715 0.8 + 2 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 4569 4741 0.72 + 1 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 5130 5247 1 + 2 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 5483 5762 0.98 + 1 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 6280 6414 1 + 0 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 7334 7446 1 + 0 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 7550 7562 0.88 + 1 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS CDS 7887 7985 0.84 + 0 transcript_id "g29.t1"; gene_id "g29"; scaffold_2_14529680-14538178 AUGUSTUS stop_codon 7983 7985 . + 0 transcript_id "g29.t1"; gene_id "g29"; # protein sequence = [DLCDLKAESSPTMDNEITAKERGVLEENNEKEEMDQEREREEEEERKRKEEEEEDGEKSQRDHEPLTEEQELEELRSQ # VLQLLLELDEARETSNKHQESFHELQGLLEDERLASAHQAEAFTRQIHNLQAQLRSVQEEMDSLEEEKESELAEAQEELRSAQEEVLLLQQAAEEAAG # ERENDIASLQEELCRLRAELQRLGDEATEYELEITTLRAEISMKSQRREVERREGEGRREEEEERQGWMSDVREGCKKDERGGEESQGINHQGGEAPV # NSVRHPTHNIVELRVGPCVRGWWVKQGWGRERKTRCSGLQFSKRRGDVGMLKEECNTLREECGTLKEDNRRLSERLQQLQRQRTSSSSVYLSLREEGE # GTEGQDMEGGTEESVNESYMTMAQSAGTNCHLVDASIQKNISFDGKPMTPTSWNGGFGEIFSLRDQLKQAEERASQVQMECDGLKTELQELQVLYDCS # QRERAVLEDELQRCRAELEKLAGEGGQSFIHPSEHPVLSIPFIGMIVIVAVVWCWLSELASQRARFDKKRSEVDWSPILTVTTATAVLLIMASLLRAL # SRY] # end gene g29 ### # # ----- sequence number 30 (length = 22163, name = scaffold_2_14541586-14563748) ----- # # annotation: # Sequence scaffold_2_14541586-14563748 length=22163 scaffold_2_14541586-14563748 database start_codon 601 603 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 980 3175 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 3425 4991 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 5090 5841 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 5993 6185 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 6305 6415 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 6494 6600 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 6764 6948 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 7150 8145 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 8284 8375 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 8503 8606 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 8744 8859 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 9054 9144 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 9259 9355 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 9500 9598 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 9723 9871 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 10033 10117 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 10209 10351 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 10522 10631 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 10750 10880 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 11144 11329 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 11928 12111 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 12286 13125 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 13289 13528 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 13858 14087 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 14212 14311 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 14469 14582 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 14773 14921 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 14946 15056 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 15302 15405 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 15506 15701 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 15843 15962 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 16092 16175 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 16350 16573 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 16739 16973 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 17178 17284 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 17438 17600 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 17724 17844 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 18088 18347 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 18618 18787 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 18926 19102 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 19219 19803 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 19937 20034 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 20212 20375 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 20595 21081 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database intron 21289 21375 . + . transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 601 979 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 3176 3424 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 4992 5089 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 5842 5992 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 6186 6304 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 6416 6493 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 6601 6763 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 6949 7149 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 8146 8283 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 8376 8502 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 8607 8743 . + 1 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 8860 9053 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 9145 9258 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 9356 9499 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 9599 9722 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 9872 10032 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 10118 10208 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 10352 10521 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 10632 10749 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 10881 11143 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 11330 11927 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 12112 12285 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 13126 13288 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 13529 13857 . + 1 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 14088 14211 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 14312 14468 . + 1 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 14583 14772 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 14922 14945 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 15057 15301 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 15406 15505 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 15702 15842 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 15963 16091 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 16176 16349 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 16574 16738 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 16974 17177 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 17285 17437 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 17601 17723 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 17845 18087 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 18348 18617 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 18788 18925 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 19103 19218 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 19804 19936 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 20035 20211 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 20376 20594 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 21082 21288 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database CDS 21376 21563 . + 2 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; scaffold_2_14541586-14563748 database stop_codon 21561 21563 . + 0 transcript_id "g_1258-T1.1"; gene_id "g_1258-T1"; # Predicted genes for sequence number 30 on both strands # start gene g30 scaffold_2_14541586-14563748 AUGUSTUS gene 601 21563 0.23 + . g30 scaffold_2_14541586-14563748 AUGUSTUS transcript 601 21563 0.23 + . g30.t1 scaffold_2_14541586-14563748 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 980 3175 0.88 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 3425 4991 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 5090 5841 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 5993 6185 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 6305 6415 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 6494 6600 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 6764 6948 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 7150 7303 0.88 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 7424 8145 0.96 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 8284 8375 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 8503 8606 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 8744 8859 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 9054 9144 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 9259 9355 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 9500 9598 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 9723 9871 0.99 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 10033 10117 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 10209 10351 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 10522 10631 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 10750 10880 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 11144 11329 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 11928 12111 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 12286 13125 0.99 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 13289 13528 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 13858 14087 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 14212 14311 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 14469 14582 0.99 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 14773 14921 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 14946 15056 0.66 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 15302 15405 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 15506 15701 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 15843 15962 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 16092 16175 0.98 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 16350 16573 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 16739 16973 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 17178 17284 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 17438 17600 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 17724 17844 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 18088 18347 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 18618 18787 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 18926 19102 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 19219 19803 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 19937 20034 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 20212 20375 0.98 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 20595 21081 0.51 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS intron 21289 21375 1 + . transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 601 979 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 3176 3424 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 4992 5089 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 5842 5992 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 6186 6304 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 6416 6493 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 6601 6763 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 6949 7149 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 7304 7423 0.88 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 8146 8283 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 8376 8502 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 8607 8743 1 + 1 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 8860 9053 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 9145 9258 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 9356 9499 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 9599 9722 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 9872 10032 0.99 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 10118 10208 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 10352 10521 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 10632 10749 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 10881 11143 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 11330 11927 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 12112 12285 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 13126 13288 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 13529 13857 1 + 1 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 14088 14211 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 14312 14468 0.99 + 1 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 14583 14772 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 14922 14945 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 15057 15301 0.66 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 15406 15505 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 15702 15842 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 15963 16091 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 16176 16349 0.98 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 16574 16738 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 16974 17177 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 17285 17437 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 17601 17723 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 17845 18087 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 18348 18617 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 18788 18925 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 19103 19218 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 19804 19936 1 + 0 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 20035 20211 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 20376 20594 0.98 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 21082 21288 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS CDS 21376 21563 1 + 2 transcript_id "g30.t1"; gene_id "g30"; scaffold_2_14541586-14563748 AUGUSTUS stop_codon 21561 21563 . + 0 transcript_id "g30.t1"; gene_id "g30"; # protein sequence = [MTSNNTYYDDQHPPQYYQGTDIGEDEEDEMPATEKDLAEDAPWKKIQQNTFTRWCNEHLKCINKGVNDLQKDLSDGLK # LIGLLEVLSQKKMYRKHHTRPNFRQMKLENVSVALEFLDREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEEAKKLTPKQRLLG # WIQNKVPQLPINNFHRDWRDGKALGALVDNCAPGLCPDWAEWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPDVDEHSVMTYLSQFPKAKLKPG # APIKPKQLFPDKAKAYGPGIEPHGNMVLKPAIFTVETLEAGQAEILVYVEDPEGHKEEAKVVFNKDKNRTYTVTYVPKVEGVHMVKVIFAGQDIDKSP # YKVNVAKAMGDPSKVQARGPGLEPTGNVANKPTYFDIYTAGAGNGDVSVIIVDPEGKKDTVELILEDKGDSIFRCTYRPMLEGPHTIHVLFAGQEIPK # SPFKVHIDEAPPTAPPTTALPVQIGSNLVRPQTGEKARKGAVPPKAGRPTINANACRATGRGLQPKGVRVKEVADFKVITKGAGSGELKVSVKGPSGA # EEPVKVRDAGDGVYECDYFPTQPGKYTVSITWGGQPIPRSPFEVEVSKEAGPQKVRAWGPGLVTGMVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIE # CDDKGDGSCDVRYWPTEAGDYAVHVICDDEDIKDSPFMAHILPAANDVFPEKVKAFGPGLEPTGVIVNKPTEFTIDASQAGKGQLKIYAQDAEGCAID # IKITDKGNGIFLCVYIPTKPMKHTIIITWGEVNVPKSPFRVLVGEGCHPDKVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDISIGIKCAPGVVGPS # EADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFAEQEIPISPFKVKVDPSHDAGKVRAEGPGLNKTGVEVGTPTHFTIYTKGAGKAKPEVLFTASAQ # GEAVRDFEIIDNHDYSYTVKYTALQQGNMSISVTHGGDPVPKSPFNITVAPPLDLAKVKVEGLDTKVEVGKDQEFTVNTKGAGGLGNVGVMMTSPSGR # PIPCKLESDKANGLHGVKYIPPEEGPYKVDVSYDGNPVLGSPFGLEGVMPADPSKVRAYGPGLQGGIVGKPAPFAIDTKGAGAGGLGLTVEGPCEAKI # ECQDNGDGTCSVFYLPTEAGEYAINILYGEQHIPGSPFKAAVRPAVDPSKVTASGPGLEKAKAGEVASFTVDCSSAGEAELTIEVVSESGAQVEVHIQ # KTSEGHFSVTYSPALHGTHTITIKYGGHMVPKFPSVIHVEPAVDTSGVQVYGPGVEPKGVLREVTTHFIVDARTLSKTGGHQVKARIINPSGTNTDAH # ITDKGDGTYRVEYTAFEDGMHLIEVLCDDVAVPKSPFRVSVVEGCDPTRVRAYGPGLEGGLVNKSNCFTVETRGAGTGGLGLTIEGASEAKMSCKDNK # DGSCSVEYVPFTPGDYDVNINFGGHPIPGSPFRVPVNDVVDPSKVKCSGPGLGTGVRAHVPQTFTVDSTRAGKAPLEVQLYGPSGSAEPVGVKNNGDG # THTVHYTPAQDGPYTVSVKYAQQEVPHSPFKVRSLPGHDASKVRASGPGLNTSGVLASLPVEFTIDARDAGEGLLTVQILDPEGKPKKATIQDNRDGT # YTVSYVPDSTGPYTITIKYGGDEIPYSPYRIQSLPTGDASKCLLTVSIGGHGVAGLGPNIQTSEDTVITVDAKAAGKGKVTCKVTTPEGSEMDMDVVE # NPDGTFDIYYTAPEPGKYVITIRFGGQHIPKSPFHVVATKEPVAPRDSMDPMFRPLNLVIPFTVQQGEITGEVRMPSGKVARPHITDNKDGTITVKFM # PTEKGLHEMDIKYEGNHIPGSPLQFYVDAINTGLVTAYGPGLCHGTVNKQASFTVITRNAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGD # YNVIVKFDNKHIPGSPFTAKITGDDSIMRTSQLNVGSAADVSLKITESDLSSLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHEVSVRKNGK # HVTNSPFKIIVGQSEIGEASRVKAFGKGLVEAHTFELAEFFVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCRVTYCPTEPGNYTINIKFADRHIP # GSPFAVKVTGEGRMKESITRKRQASSIASVGSACGLNLKIPGNWFQMVSAQERLSRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGSPF # RDVFGEFLNRESISSFGGIPQKKEVESGNQAMTAQVTSPSGKTVDADIMDGGDSTYSVRFIPQEMGPHTVNVKYSGQHVPGSPFQFTVGPLGEGGSHR # VRAGGTGLERGVAGAPTEFSIWTREAGAGGLSIAVEGPSKAEISFEDRKDGSCGVSYIVQEPGDYEVSIKFNNEHIPDSPFIVPIATVSDEASRLTVT # SLQEKDLKVNQEASFAVQRNGARGVVDAKVHTPSGSAEECYVTELDSDKNAIRFIPRENGVHSIDVKFNGCHIPGSPFNVRVGAPGQAGDPGMVTAFG # PGLEGGATGAPSEFVVNTCNAGSGALSVNIDGPSKVKMDCQECPEGYKVTYTPMAPGNYLITIKYGGPQHIVGSPFKAKVTGTRLSGGHSLHETSSVL # VETVTKTSKVAGAYSTSSKLASDASKVVCRGAGLTNALLGQKNNFNVDCSKAGTNMLMVGIHGPRAPCEEVYVKHMGNKLYNVTYSVKDKGSYTVIIK # WGDDNVPGSPFKVAVP] # end gene g30 ### # # ----- sequence number 31 (length = 4028, name = scaffold_2_15264993-15269020) ----- # # annotation: # Sequence scaffold_2_15264993-15269020 length=4028 scaffold_2_15264993-15269020 database start_codon 601 603 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 859 955 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 1145 1205 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 1391 1477 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 1830 1972 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 2119 2290 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 2446 2928 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database intron 3087 3245 . + . transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 601 858 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 956 1144 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 1206 1390 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 1478 1829 . + 1 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 1973 2118 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 2291 2445 . + 1 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 2929 3086 . + 2 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database CDS 3246 3428 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; scaffold_2_15264993-15269020 database stop_codon 3426 3428 . + 0 transcript_id "g_1262-T1.1"; gene_id "g_1262-T1"; # Predicted genes for sequence number 31 on both strands # start gene g31 scaffold_2_15264993-15269020 AUGUSTUS gene 1016 3428 0.17 + . g31 scaffold_2_15264993-15269020 AUGUSTUS transcript 1016 3428 0.17 + . g31.t1 scaffold_2_15264993-15269020 AUGUSTUS start_codon 1016 1018 . + 0 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 1145 1205 0.96 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 1391 1477 1 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 1629 1972 0.63 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 2119 2290 0.83 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 2446 2928 0.45 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS intron 3087 3245 0.99 + . transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 1016 1144 0.76 + 0 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 1206 1390 0.97 + 0 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 1478 1628 0.64 + 1 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 1973 2118 0.99 + 0 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 2291 2445 0.72 + 1 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 2929 3086 0.51 + 2 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS CDS 3246 3428 0.79 + 0 transcript_id "g31.t1"; gene_id "g31"; scaffold_2_15264993-15269020 AUGUSTUS stop_codon 3426 3428 . + 0 transcript_id "g31.t1"; gene_id "g31"; # protein sequence = [MRETSESLIRLRNIPSSVLHSLLEFTFRNNFAVPQEELGIHIQVASYLLAENFLSRCLSALDSVLTPETCLFYLGLAQ # DICCTELQTTVFTYLSRHLLELPHLTRREDLQERAELLCLRSQGDLQLCSLRKENLTSWKDPETEAARHIFRFEGSEHRRHFSAVACDGCIYAVGGWY # LDSLVSPDSSTTLYTAVECYNPWEDTWRFVSSLPMTDFLFSMSLSHDVPLASSLGHFLYVLGNIQRTGEKLILQYNTRQDTWCELLPTLTRADADIPS # MYFLGATDKLFVIGGNNSENMVASFSVESQQWGKVQAAEKVALAGQGAVLGDQVYMPGIEHNAIVRLDLHTLTLSVLPPLPIETNYEAVFHLHF] # end gene g31 ### # # ----- sequence number 32 (length = 3838, name = scaffold_3_1838596-1842433) ----- # # annotation: # Sequence scaffold_3_1838596-1842433 length=3838 scaffold_3_1838596-1842433 database start_codon 601 603 . + 0 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database intron 716 955 . + . transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database intron 1052 1497 . + . transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database intron 1654 2360 . + . transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database intron 2550 2798 . + . transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database CDS 601 715 . + 0 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database CDS 956 1051 . + 2 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database CDS 1498 1653 . + 2 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database CDS 2361 2549 . + 2 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database CDS 2799 3238 . + 2 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; scaffold_3_1838596-1842433 database stop_codon 3236 3238 . + 0 transcript_id "g_1856-T1.1"; gene_id "g_1856-T1"; # Predicted genes for sequence number 32 on both strands # start gene g32 scaffold_3_1838596-1842433 AUGUSTUS gene 1 3238 0.33 + . g32 scaffold_3_1838596-1842433 AUGUSTUS transcript 1 3238 0.33 + . g32.t1 scaffold_3_1838596-1842433 AUGUSTUS intron 1 596 0.45 + . transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS intron 716 955 1 + . transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS intron 1052 1497 1 + . transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS intron 1654 2360 0.71 + . transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS intron 2550 2798 1 + . transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS CDS 597 715 0.47 + 1 transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS CDS 956 1051 1 + 2 transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS CDS 1498 1653 0.99 + 2 transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS CDS 2361 2549 0.99 + 2 transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS CDS 2799 3238 1 + 2 transcript_id "g32.t1"; gene_id "g32"; scaffold_3_1838596-1842433 AUGUSTUS stop_codon 3236 3238 . + 0 transcript_id "g32.t1"; gene_id "g32"; # protein sequence = [AMTPSSLGKHLVACLLNVSEARRKDLVETVARAAIFDCQGVRRERTAVLNIFNDHDYNRSVITIVATIDTIRESVLSA # CEKAFRLIDVSSHAGSHPCMGAVDLVPLYPLGEEVGVERCAKEAIAVAESLTRRVTGTSVFLFGWADTPQNRGLAQRRRELGWFKKSVEVADVRPDRG # PKPQRRYGITGVGSSPYVMNCNVTIDTQDLALGRTIAAAIRESTPGGIPGVQVLALPHEGAVEIACNVESVRGSPPCPSEAGGDPWPSFSLGGQPYCH # APASLITSRVAELAAQQGVGTRGTALVGFTPRECRALAETALALGIAEFWKESHSIRM] # end gene g32 ### # # ----- sequence number 33 (length = 6320, name = scaffold_3_3733858-3740177) ----- # # annotation: # Sequence scaffold_3_3733858-3740177 length=6320 scaffold_3_3733858-3740177 database start_codon 601 603 . + 0 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 665 2092 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 2217 2619 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 2802 2940 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 3102 4675 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 4830 5039 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database intron 5198 5330 . + . transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 601 664 . + 0 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 2093 2216 . + 2 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 2620 2801 . + 1 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 2941 3101 . + 2 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 4676 4829 . + 0 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 5040 5197 . + 2 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database CDS 5331 5720 . + 0 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; scaffold_3_3733858-3740177 database stop_codon 5718 5720 . + 0 transcript_id "g_1866-T1.1"; gene_id "g_1866-T1"; # Predicted genes for sequence number 33 on both strands # start gene g33 scaffold_3_3733858-3740177 AUGUSTUS gene 1821 5720 0.52 + . g33 scaffold_3_3733858-3740177 AUGUSTUS transcript 1821 5720 0.52 + . g33.t1 scaffold_3_3733858-3740177 AUGUSTUS start_codon 1821 1823 . + 0 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 1846 2092 0.55 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 2217 2619 1 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 2802 2940 1 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 3102 4675 0.93 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 4830 5039 1 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS intron 5198 5330 1 + . transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 1821 1845 0.64 + 0 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 2093 2216 0.57 + 2 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 2620 2801 1 + 1 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 2941 3101 0.98 + 2 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 4676 4829 1 + 0 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 5040 5197 1 + 2 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS CDS 5331 5720 1 + 0 transcript_id "g33.t1"; gene_id "g33"; scaffold_3_3733858-3740177 AUGUSTUS stop_codon 5718 5720 . + 0 transcript_id "g33.t1"; gene_id "g33"; # protein sequence = [MSADHETEIQAAKLAKPHLTLHTLNTRYILTWEHDVASQLAVNFTTQYLSKYKLSWKRKTWTSVCVGPEPSCDLTSAQ # LHYHAMYVLRVRASAYGIHSDWAEKDFCPDIDADIGPPSRVELSPVSNLLGVAISPPLTNEGVSMKENVPQIYYRILYWSRLADPLGKNPSVVNSGST # HVILPGLQSWTWYCVKVQARFDYYNKTSRHTLTQCMETAGELPYWLIFLAFLASLVAAFLFVLGSSYVVFKGYRVLKSTYFPSIQLPPHMQEYLSDSA # HSDLPRLLSPEAEVELVCDKISVCLEKDFLEVHSPPPLEPGLAAPPSGLEDDCGRHSRQDSGDSGMYSTEGGSAQKHGGHSQPTGETLDSWDAPLLEH # VKMKEMGGELLNRDAADEGVLDMGV] # end gene g33 ### # # ----- sequence number 34 (length = 1991, name = scaffold_3_4886673-4888663) ----- # # annotation: # Sequence scaffold_3_4886673-4888663 length=1991 scaffold_3_4886673-4888663 database start_codon 601 603 . + 0 transcript_id "g_1872-T1.1"; gene_id "g_1872-T1"; scaffold_3_4886673-4888663 database intron 947 1218 . + . transcript_id "g_1872-T1.1"; gene_id "g_1872-T1"; scaffold_3_4886673-4888663 database CDS 601 946 . + 0 transcript_id "g_1872-T1.1"; gene_id "g_1872-T1"; scaffold_3_4886673-4888663 database CDS 1219 1391 . + 2 transcript_id "g_1872-T1.1"; gene_id "g_1872-T1"; scaffold_3_4886673-4888663 database stop_codon 1389 1391 . + 0 transcript_id "g_1872-T1.1"; gene_id "g_1872-T1"; # Predicted genes for sequence number 34 on both strands # start gene g34 scaffold_3_4886673-4888663 AUGUSTUS gene 1 1391 0.28 + . g34 scaffold_3_4886673-4888663 AUGUSTUS transcript 1 1391 0.28 + . g34.t1 scaffold_3_4886673-4888663 AUGUSTUS intron 1 162 0.45 + . transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS intron 192 729 0.64 + . transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS intron 881 1218 0.78 + . transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS CDS 163 191 0.45 + 2 transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS CDS 730 880 0.76 + 0 transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS CDS 1219 1391 0.76 + 2 transcript_id "g34.t1"; gene_id "g34"; scaffold_3_4886673-4888663 AUGUSTUS stop_codon 1389 1391 . + 0 transcript_id "g34.t1"; gene_id "g34"; # protein sequence = [YMSIMERYQHKLKSSQRDKVRQFMSFTQAGEKTAVYCLTQNDWKLEVATDNYFQNPDLFYPQDENKIGIDGIQQFCDD # LCLDPASISVLVVAWKFRAATQCEFSKKEFLDGMTELG] # end gene g34 ### # # ----- sequence number 35 (length = 3383, name = scaffold_3_4983429-4986811) ----- # # annotation: # Sequence scaffold_3_4983429-4986811 length=3383 scaffold_3_4983429-4986811 database start_codon 601 603 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database intron 606 732 . + . transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database intron 809 1108 . + . transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database intron 1220 1794 . + . transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database intron 1932 2388 . + . transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database intron 2453 2702 . + . transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 601 605 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 733 808 . + 1 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 1109 1219 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 1795 1931 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 2389 2452 . + 1 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database CDS 2703 2783 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; scaffold_3_4983429-4986811 database stop_codon 2781 2783 . + 0 transcript_id "g_1874-T1.1"; gene_id "g_1874-T1"; # Predicted genes for sequence number 35 on both strands # start gene g35 scaffold_3_4983429-4986811 AUGUSTUS gene 601 2783 0.67 + . g35 scaffold_3_4983429-4986811 AUGUSTUS transcript 601 2783 0.67 + . g35.t1 scaffold_3_4983429-4986811 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS intron 606 732 0.84 + . transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS intron 809 1108 0.99 + . transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS intron 1220 1794 1 + . transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS intron 1932 2388 0.99 + . transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS intron 2453 2702 1 + . transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 601 605 0.67 + 0 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 733 808 0.97 + 1 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 1109 1219 1 + 0 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 1795 1931 1 + 0 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 2389 2452 0.99 + 1 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS CDS 2703 2783 1 + 0 transcript_id "g35.t1"; gene_id "g35"; scaffold_3_4983429-4986811 AUGUSTUS stop_codon 2781 2783 . + 0 transcript_id "g35.t1"; gene_id "g35"; # protein sequence = [MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNGKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVKF # QRAITGASLQEIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKPSAPSAKAPSKTAPKPKIAKPMKVNAPRVGGKR] # end gene g35 ### # # ----- sequence number 36 (length = 4980, name = scaffold_3_6649248-6654227) ----- # # annotation: # Sequence scaffold_3_6649248-6654227 length=4980 scaffold_3_6649248-6654227 database start_codon 601 603 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 668 747 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 825 1195 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 1391 1546 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 1630 1739 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 1869 2235 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 2359 2460 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 2560 2657 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 2793 2868 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 3007 3173 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 3271 3397 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 3609 3740 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 3809 3900 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database intron 3948 4139 . + . transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 601 667 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 748 824 . + 2 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 1196 1390 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 1547 1629 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 1740 1868 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 2236 2358 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 2461 2559 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 2658 2792 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 2869 3006 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 3174 3270 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 3398 3608 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 3741 3808 . + 2 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 3901 3947 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database CDS 4140 4380 . + 1 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; scaffold_3_6649248-6654227 database stop_codon 4378 4380 . + 0 transcript_id "g_1879-T1.1"; gene_id "g_1879-T1"; # Predicted genes for sequence number 36 on both strands # start gene g36 scaffold_3_6649248-6654227 AUGUSTUS gene 1 4380 0.69 + . g36 scaffold_3_6649248-6654227 AUGUSTUS transcript 1 4380 0.69 + . g36.t1 scaffold_3_6649248-6654227 AUGUSTUS intron 1 59 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 179 556 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 668 747 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 825 1195 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 1391 1546 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 1630 1739 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 1869 1956 0.99 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 2174 2254 0.91 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 2359 2460 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 2560 2657 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 2793 2868 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 3007 3173 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 3271 3397 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 3609 3740 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 3809 3900 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS intron 3948 4139 1 + . transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 60 178 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 557 667 1 + 2 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 748 824 1 + 2 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 1196 1390 1 + 0 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 1547 1629 1 + 0 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 1740 1868 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 1957 2173 0.9 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 2255 2358 0.91 + 0 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 2461 2559 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 2658 2792 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 2869 3006 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 3174 3270 1 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 3398 3608 1 + 0 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 3741 3808 1 + 2 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 3901 3947 1 + 0 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS CDS 4140 4380 0.79 + 1 transcript_id "g36.t1"; gene_id "g36"; scaffold_3_6649248-6654227 AUGUSTUS stop_codon 4378 4380 . + 0 transcript_id "g36.t1"; gene_id "g36"; # protein sequence = [IEEPMSSEVEEEREERPALVPSMFPHVPPTLYFSTANERVELLPLEQRHLLKWKMSSVTPNVVKNTITRSHFKVTKRS # HDWLGCWGHHMKSPCFKAIREYQKLNHFPGSFQIGRKDRLWRNLSKMQARFGKRDFGFFPRSFVLPQDIKQLRKAWEDGSSRQKWIIKPPASARGIGI # QVIHKWSQMPRKRPLLVQKYLHKPYLISGNKFDLRIYVYVSSYDPLRIYIFSDGLVRFASCKACALACPLAYSRAIPLVCPLACPLACPHPCSRACAL # AFPLAYSRAIPLACPLACSRACPLACPLAYSRTCPLSLGNKFMHLTNYSVNKKNSEYQSNSDNTACQGHKWALKALWQYLGSKGVNTTGIWEKIKDIV # IKTIIASDPYVNSLVKMHLRSSYSCHELFGFDIMLDENLKPWVLEVNISPSLHSNTALDVAIKGQMIRDVLNLAGFVLPQRDDVVPSCSSASSSSSSL # CGGTRERSRSELSTDEKVKRAFYLSQRFTDQDLLASVLDVLTPEDVRVLAETEDELCRRGDFERIFPSPISSRYLRFFEHSRYLNILLDQWGQKYSQN # ESKGIHLLKTLCQKGVHLGTSDPAHIWSKSSYVPRPDLSRPSVVVSHRRRFPPDDEDFSDREIQSVTSSLPDISLMDSPGLSPSPSPGLSQSSSPGLS # RSASPGPGPGPIFPHSLPPKDLI] # end gene g36 ### # # ----- sequence number 37 (length = 3436, name = scaffold_3_8532107-8535542) ----- # # annotation: # Sequence scaffold_3_8532107-8535542 length=3436 scaffold_3_8532107-8535542 database start_codon 601 603 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database intron 721 1036 . + . transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database intron 1166 1521 . + . transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database intron 1631 1747 . + . transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database intron 1960 2098 . + . transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database intron 2159 2551 . + . transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 601 720 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 1037 1165 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 1522 1630 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 1748 1959 . + 2 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 2099 2158 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database CDS 2552 2836 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; scaffold_3_8532107-8535542 database stop_codon 2834 2836 . + 0 transcript_id "g_1884-T1.1"; gene_id "g_1884-T1"; # Predicted genes for sequence number 37 on both strands # start gene g37 scaffold_3_8532107-8535542 AUGUSTUS gene 1594 2836 0.5 + . g37 scaffold_3_8532107-8535542 AUGUSTUS transcript 1594 2836 0.5 + . g37.t1 scaffold_3_8532107-8535542 AUGUSTUS start_codon 1594 1596 . + 0 transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS intron 1631 1747 0.99 + . transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS intron 1960 2551 0.9 + . transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS CDS 1594 1630 0.55 + 0 transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS CDS 1748 1959 1 + 2 transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS CDS 2552 2836 1 + 0 transcript_id "g37.t1"; gene_id "g37"; scaffold_3_8532107-8535542 AUGUSTUS stop_codon 2834 2836 . + 0 transcript_id "g37.t1"; gene_id "g37"; # protein sequence = [MNNYLMGERLIKCHLMPPEKVHEKLFVGSQREFKKPKLPAVARYNKKHTPEELTKMSKKLLKKEAQLRKRLAEKGIDY # DFPGFDTTPVCTPSFMERRKSTRVTDDDVDDEIVITATPAPKSRVRGEGEEDQEGDDDSSVEGDYEQADGEEQADGEEQADGEEPSQGNEGPTEEDGA # Q] # end gene g37 ### # # ----- sequence number 38 (length = 3033, name = scaffold_3_12062538-12065570) ----- # # annotation: # Sequence scaffold_3_12062538-12065570 length=3033 scaffold_3_12062538-12065570 database start_codon 601 603 . + 0 transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database intron 920 1432 . + . transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database intron 1797 2027 . + . transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database CDS 601 919 . + 0 transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database CDS 1433 1796 . + 2 transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database CDS 2028 2433 . + 1 transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; scaffold_3_12062538-12065570 database stop_codon 2431 2433 . + 0 transcript_id "g_1898-T1.1"; gene_id "g_1898-T1"; # Predicted genes for sequence number 38 on both strands # start gene g38 scaffold_3_12062538-12065570 AUGUSTUS gene 643 2433 0.22 + . g38 scaffold_3_12062538-12065570 AUGUSTUS transcript 643 2433 0.22 + . g38.t1 scaffold_3_12062538-12065570 AUGUSTUS start_codon 643 645 . + 0 transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS intron 920 1432 0.57 + . transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS intron 1797 2027 1 + . transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS CDS 643 919 0.4 + 0 transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS CDS 1433 1796 0.57 + 2 transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS CDS 2028 2433 1 + 1 transcript_id "g38.t1"; gene_id "g38"; scaffold_3_12062538-12065570 AUGUSTUS stop_codon 2431 2433 . + 0 transcript_id "g38.t1"; gene_id "g38"; # protein sequence = [MVLSGVGDALAYNHGDWEFQRNGKVIHDEVVKSGGIAKLNAKHFPVSDDTVMHLATAEALVEVGEGATLPQVYLTLVR # EYIKSMADMHGRAPGLTCMSMMNMHSCRTDQDWKVPFNRKGGGCGAAMRAMCIGLRFPDPEQEDLLINLSVESGRLTHHHPTGYLGALAAALFTAYAV # RGSPSVEAWGHGLMEVLERAKQYVKDTGHCVEENLQHWNYFEESWRKYLEKRNILDGKSQPCFPEVYGIQEREEFYKSLSFQGTGGASGHDAPMIAYD # ALLWAGDSWVELANHGFFHGGDSDSTGVIVAAWWGALYAYTGVPKVNYKSLEYRARLAGVAEQLYKLRGKPLLK] # end gene g38 ### # # ----- sequence number 39 (length = 8115, name = scaffold_3_13833023-13841137) ----- # # annotation: # Sequence scaffold_3_13833023-13841137 length=8115 scaffold_3_13833023-13841137 database start_codon 601 603 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database intron 793 3434 . + . transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database intron 3525 5046 . + . transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database intron 5127 5254 . + . transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database intron 5371 7169 . + . transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database intron 7268 7437 . + . transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 601 792 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 3435 3524 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 5047 5126 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 5255 5370 . + 1 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 7170 7267 . + 2 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database CDS 7438 7515 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; scaffold_3_13833023-13841137 database stop_codon 7513 7515 . + 0 transcript_id "g_1904-T1.1"; gene_id "g_1904-T1"; # Predicted genes for sequence number 39 on both strands # (none) # # ----- sequence number 40 (length = 14035, name = scaffold_3_14677242-14691276) ----- # # annotation: # Sequence scaffold_3_14677242-14691276 length=14035 scaffold_3_14677242-14691276 database start_codon 601 603 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 1055 1164 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 1335 1511 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 1757 1984 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 2153 2385 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 2544 2937 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 3138 3324 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 3475 3661 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 3823 4434 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 4592 4839 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 5065 5204 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 5271 5809 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 6050 6344 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 6435 6607 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 6689 7176 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 7444 7607 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 7892 9007 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 9105 9198 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 9319 9480 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 9583 9702 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 9832 9906 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 10040 10714 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 10819 11018 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 11208 11456 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 11565 11935 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 12146 12259 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 12368 12672 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database intron 12839 13319 . + . transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 601 1054 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 1165 1334 . + 2 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 1512 1756 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 1985 2152 . + 1 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 2386 2543 . + 1 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 2938 3137 . + 2 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 3325 3474 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 3662 3822 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 4435 4591 . + 1 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 4840 5064 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 5205 5270 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 5810 6049 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 6345 6434 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 6608 6688 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 7177 7443 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 7608 7891 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 9008 9104 . + 1 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 9199 9318 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 9481 9582 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 9703 9831 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 9907 10039 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 10715 10818 . + 2 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 11019 11207 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 11457 11564 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 11936 12145 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 12260 12367 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 12673 12838 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database CDS 13320 13435 . + 2 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; scaffold_3_14677242-14691276 database stop_codon 13433 13435 . + 0 transcript_id "g_1908-T1.1"; gene_id "g_1908-T1"; # Predicted genes for sequence number 40 on both strands # start gene g39 scaffold_3_14677242-14691276 AUGUSTUS gene 1 13435 0.21 + . g39 scaffold_3_14677242-14691276 AUGUSTUS transcript 1 13435 0.21 + . g39.t1 scaffold_3_14677242-14691276 AUGUSTUS intron 1055 1164 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 1335 1511 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 1757 1984 0.97 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 2153 2385 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 2544 2937 0.97 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 3138 3324 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 3475 3661 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 3823 4434 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 4592 4839 0.98 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 5065 5204 0.9 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 5271 5809 0.9 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 6050 6344 0.99 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 6435 6607 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 6689 7197 0.3 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 7444 7607 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 7892 9007 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 9105 9198 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 9319 9480 0.98 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 9583 9702 0.99 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 9832 9906 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 10040 10714 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 10819 11018 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 11208 11456 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 11565 11935 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 12146 12259 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 12368 12672 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS intron 12839 13319 1 + . transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 1 1054 0.72 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 1165 1334 1 + 2 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 1512 1756 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 1985 2152 1 + 1 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 2386 2543 1 + 1 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 2938 3137 0.97 + 2 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 3325 3474 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 3662 3822 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 4435 4591 1 + 1 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 4840 5064 0.98 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 5205 5270 0.9 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 5810 6049 0.99 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 6345 6434 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 6608 6688 0.49 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 7198 7443 0.57 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 7608 7891 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 9008 9104 1 + 1 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 9199 9318 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 9481 9582 0.98 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 9703 9831 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 9907 10039 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 10715 10818 1 + 2 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 11019 11207 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 11457 11564 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 11936 12145 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 12260 12367 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 12673 12838 1 + 0 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS CDS 13320 13435 1 + 2 transcript_id "g39.t1"; gene_id "g39"; scaffold_3_14677242-14691276 AUGUSTUS stop_codon 13433 13435 . + 0 transcript_id "g39.t1"; gene_id "g39"; # protein sequence = [EEGSNMENRAPSPHVTQEDLHSEVVEVCSSSTLLSNDEGNDENLEGRSVDEGSSKVHFSIGKAPVKEEQESRSSPKVS # RKTSSRHVRPKKDKSGPLFKGESSTRLVEPAKQAMSPSVAECARAVFAAFLWHEGIVHDAMACSSFLKFNPELTKEHAPIRSSLGGQGTEEKESKLKN # RHSLEISSALNMFNIAPHGPDISKMGSINKNKVLSMLKEPPLPEKCEDGKGEAAPYEMTSHPTMRAKSILPLTLQHLVAFWEDISMATIKAATQNMIF # PSPGSSAILKKKEHEKDSKKSKKEKKKREKAEVRPRGNLFGEMAQLAMGGPEKDTICELCGESHPYPVTYHMRQAHPGCGRYAGGQGYNSIGHFCGGW # AGNCGDGGIGGSTWYLVCDRCREKYLREKQTAAREKVKQSRRKPLQVKTPRALPTMEAHQVIRANALFLLSLSSAAQPSLLCHHPSRPLHSQLPCLKE # GVSDELPNKIGCLYLQTLARQHTENFGNYQDDNLFQDEMRYLRSTSVPAPYISVTPDACPNVFEEPESNMKSMPPSLETSPITDSDTAKRTVFQRSYS # VVASEYDKQHSASPARVKAVPRRRVHSGDAEVGSSLLRHPSPELSRLISAHGSLSKGERNFQWPVLAFVIQHHDLEGLEVAMRHALRKSACRVFAMEA # FNWLLCNVIQTTSLHDILWHFVASLTPSPFEPEEEEEEENKGNKENVEQERDLGVCEHPLSDIVIAGEAAHPLPHTFHRLLQTISDLMMSLPSGSSLQ # QMALRCWSLKFKQSDHQFLHQSNVFHHINNILSKSDDGDSEESFNISVQSGYEAMSQELCLVTCLKDLTSVADIKTSSRPAMIGSLTDGSTETFWESG # DEDKNKTKSITISCVKGINASYVSVHVDNSRDIGNKVTSMTFLCGKALEDLCRIKQVDLDSRHMGWVTSELPGGDHHVIKVELKGPENTLRVRQVKLL # GWKEGESIKIAGQISASVAQQKNCEAETLRVFRLITSQVFGKLICGDAEPTPEQEEKNLLSSPEGEDKAPSDADLKEHMVGIIFSRSKLTNLQKQAIR # MEATRVREEWEHAISSKENANSQPSDDDASSDAYCFELLSMVLALSGSNVGRQYLAQQLTLMQDLFSLLHTASPRVQRQVTSLLRRVLPEVTPVRLAS # IIGVKALPPADISDIIHSTEKGDWNKLCILDMFLGCIAKALTVQLKAKGTTIAGTAGMAAGKGVTTVTLPMIFNSSYIRRGESHWWMKGSTPPQIAEI # IIKLVKDMAAGHLSDAWSRVTKNAIAETIIALTKMEEEHRSPVRCIATTRLWLALASLCVLDQDHVDRLSSGRWMGKDGQQKQMPMCDNHDDGETAAI # ILCNMCGNLCTDCDRFLHLHRRTRSHQRQVFKEEEEAIKVDLHEGCGRTKLFWLMALADSKTMKAMVEFREHTGKPASSSSDACRFCGTRNGTELSAV # GSVCSDPDCQEYSKMACCKTHPCGHPCGGVKNEEACLPCLHGCDKSTGCLKQDADDMCMICFTEALSAAPAVQLDCSHVFHLQCTRRVLENRWLGPRI # TFGFMSCPICKNKIHHSVIKDLLDPIKELFEDVRRKALMRLEYEGLHKSEAITTPGARFHNDPAGFAMNRYAYYVCYKCKKAYFGGEARCDAEAGQGD # DYDPSELICGACSDVSRAQMCSKHGTDFLEYKCRYCCSVAVFFCFGTTHFCNACHDDFQRMTSVPKEELPHCPAGPKGKQLEGTECPLHVVHPPTGEE # FALGCGVCRNAHTF] # end gene g39 ### # # ----- sequence number 41 (length = 6307, name = scaffold_3_14706274-14712580) ----- # # annotation: # Sequence scaffold_3_14706274-14712580 length=6307 scaffold_3_14706274-14712580 database start_codon 601 603 . + 0 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database intron 709 1912 . + . transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database intron 2085 3005 . + . transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database intron 3205 5511 . + . transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database CDS 601 708 . + 0 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database CDS 1913 2084 . + 0 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database CDS 3006 3204 . + 2 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database CDS 5512 5707 . + 1 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; scaffold_3_14706274-14712580 database stop_codon 5705 5707 . + 0 transcript_id "g_1909-T1.1"; gene_id "g_1909-T1"; # Predicted genes for sequence number 41 on both strands # start gene g40 scaffold_3_14706274-14712580 AUGUSTUS gene 601 5707 0.68 + . g40 scaffold_3_14706274-14712580 AUGUSTUS transcript 601 5707 0.68 + . g40.t1 scaffold_3_14706274-14712580 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS intron 709 1912 0.69 + . transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS intron 2085 3005 1 + . transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS intron 3205 5511 0.99 + . transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS CDS 601 708 0.69 + 0 transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS CDS 1913 2084 0.92 + 0 transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS CDS 3006 3204 1 + 2 transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS CDS 5512 5707 0.99 + 1 transcript_id "g40.t1"; gene_id "g40"; scaffold_3_14706274-14712580 AUGUSTUS stop_codon 5705 5707 . + 0 transcript_id "g40.t1"; gene_id "g40"; # protein sequence = [MGKHVAVVLAGCGVYDGTEIHEASAVLVHLSRFGASVKIFAPNVDQMHVVDHLKGAPTEEKRNVLVESARLARGEIKD # LSELSVKEHDAIIFPGGFGAAKNLSSWAVKGKDCTVNGQVKATMQEFHAEGKPIGLCCISPVLAAKVFPGCEVTVGDEKDERSPDVPGTAEAITQLGC # KHVSKSVSETHVDEKNKLVTTCAFMCKAPLHEIFDGIGAMVQDVLKLA] # end gene g40 ### # # ----- sequence number 42 (length = 5902, name = scaffold_3_15569401-15575302) ----- # # annotation: # Sequence scaffold_3_15569401-15575302 length=5902 scaffold_3_15569401-15575302 database start_codon 601 603 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 694 1033 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 1166 1252 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 1301 1387 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 1453 1539 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 1605 1746 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 1856 2328 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 2768 2908 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 3155 3345 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 3509 3750 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 3954 4083 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 4217 4312 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 4454 4571 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database intron 4695 5096 . + . transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 601 693 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 1034 1165 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 1253 1300 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 1388 1452 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 1540 1604 . + 1 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 1747 1855 . + 2 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 2329 2767 . + 1 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 2909 3154 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 3346 3508 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 3751 3953 . + 2 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 4084 4216 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 4313 4453 . + 2 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 4572 4694 . + 2 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database CDS 5097 5302 . + 2 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; scaffold_3_15569401-15575302 database stop_codon 5300 5302 . + 0 transcript_id "g_1912-T1.1"; gene_id "g_1912-T1"; # Predicted genes for sequence number 42 on both strands # start gene g41 scaffold_3_15569401-15575302 AUGUSTUS gene 601 5302 0.34 + . g41 scaffold_3_15569401-15575302 AUGUSTUS transcript 601 5302 0.34 + . g41.t1 scaffold_3_15569401-15575302 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 694 1033 0.44 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 1166 1252 0.99 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 1301 1387 0.99 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 1453 1539 1 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 1605 1746 1 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 1856 2328 0.99 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 2768 2908 1 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 3155 3345 0.94 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 3509 3750 0.94 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 3954 4083 0.89 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 4217 4312 1 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 4454 4571 0.98 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS intron 4695 5096 1 + . transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 601 693 0.85 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 1034 1165 0.53 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 1253 1300 0.99 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 1388 1452 1 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 1540 1604 1 + 1 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 1747 1855 1 + 2 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 2329 2767 1 + 1 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 2909 3154 0.94 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 3346 3508 1 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 3751 3953 0.94 + 2 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 4084 4216 0.89 + 0 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 4313 4453 1 + 2 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 4572 4694 0.98 + 2 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS CDS 5097 5302 1 + 2 transcript_id "g41.t1"; gene_id "g41"; scaffold_3_15569401-15575302 AUGUSTUS stop_codon 5300 5302 . + 0 transcript_id "g41.t1"; gene_id "g41"; # protein sequence = [MVLNPVISKLSRKLVVLASASPRRLEILTNVGLRFEVVPSWFKETLDKRLFSAPHEYAVETAKHKALEVAKRMPCKHL # KTPDIVIGADTIVTVDGLILEKPVDKQDAYRMLSRLSGKEHSVFTGVAIVLCHENEDGEVDYQLIDFYEETKVKFADLSEEMLWEYINSGEPMDKAGG # YGIQALGGMLVEYVHGDFLNVVGFPLNRFCKQLDLLYNRPPSSLDLNGPPTAHSSTQTTPTLASPPPANLANHSPPASPAFTSSTANPSPPESPFLSS # PPANQAHHGPQDSQSHSPPANLVNHSPLSSLANSSPTTSPAHKVKKEDGLNSVGDTPWTQINSLSKCSENGEAHLHEDDGADSAVASRGPVNSLSQVE # QVEGEPSLEDPHLQKMIELMDGFKASKALFTASKLRVFDVLEARPGQGAAEVAQEIQSSVKGTERLLEACVSLGLLDSHERPVYQKPVYENTDMARRF # LLSHAPHSLQGYIQHCNELVWPLFTHLEAGVREGTNQHERAFGKKSDNLFQDAYYSRHEVKLRFMNAMHSIAKITGGVVATAFDLSGFKTACDLGGCT # GAMAYEFTKANPGMTVTVFDLPAVIEMSGHFRPVDIDSRVSFVTGDFFKDPLPKADLYILGRILHDWTDEKVHTLLRKISDACTPGSGVLLSEIFLRD # DRRGPGRGLLQALSMSEGRQRSATEYTLLLKTHGFTTVHVQHTHSLLDAMLCLKE] # end gene g41 ### # # ----- sequence number 43 (length = 6530, name = scaffold_3_16423935-16430464) ----- # # annotation: # Sequence scaffold_3_16423935-16430464 length=6530 scaffold_3_16423935-16430464 database start_codon 601 603 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 683 1267 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 1371 1463 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 1493 1861 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 1981 2068 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 2271 2392 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 2526 2659 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 2715 2830 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 2996 3578 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 3707 3945 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 4049 4406 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 4539 5367 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database intron 5577 5791 . + . transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 601 682 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 1268 1370 . + 2 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 1464 1492 . + 1 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 1862 1980 . + 2 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 2069 2270 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 2393 2525 . + 2 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 2660 2714 . + 1 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 2831 2995 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 3579 3706 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 3946 4048 . + 1 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 4407 4538 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 5368 5576 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database CDS 5792 5930 . + 1 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; scaffold_3_16423935-16430464 database stop_codon 5928 5930 . + 0 transcript_id "g_1915-T1.1"; gene_id "g_1915-T1"; # Predicted genes for sequence number 43 on both strands # start gene g42 scaffold_3_16423935-16430464 AUGUSTUS gene 601 5930 0.19 + . g42 scaffold_3_16423935-16430464 AUGUSTUS transcript 601 5930 0.19 + . g42.t1 scaffold_3_16423935-16430464 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 683 1267 0.98 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 1371 1463 0.42 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 1493 1861 0.41 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 1981 2068 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 2271 2392 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 2526 2659 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 2751 2830 0.98 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 2996 3241 0.54 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 3260 3578 0.54 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 3707 3945 0.98 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 4049 4406 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 4539 5367 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS intron 5577 5791 1 + . transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 601 682 0.98 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 1268 1370 0.98 + 2 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 1464 1492 0.42 + 1 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 1862 1980 0.5 + 2 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 2069 2270 1 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 2393 2525 1 + 2 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 2660 2750 0.98 + 1 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 2831 2995 1 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 3242 3259 0.54 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 3579 3706 1 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 3946 4048 0.98 + 1 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 4407 4538 1 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 5368 5576 1 + 0 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS CDS 5792 5930 1 + 1 transcript_id "g42.t1"; gene_id "g42"; scaffold_3_16423935-16430464 AUGUSTUS stop_codon 5928 5930 . + 0 transcript_id "g42.t1"; gene_id "g42"; # protein sequence = [MRWFEGSIPAAIAAAKQQNFVFVVVITGDDEQSTQMVSSWEDDIVADASLNTCVAIKVDAKSETCVQFSQIYPVVCIP # SSFFIGENGIPLEVIAGSVPAEELRKRIDKVKEMHAQQIRAGAEAVAPQAEMGLPMEAPLPEEQAPAPVTALPLSPPAPQDLQPTRTPATESTATPST # SKESLSRPADGGGASGHVTPGEDRSTSSDDASASSQPDEGLDAKVERLTKRLEERREQKKKVEEEVTPDVAEVVRQEGEIKKEMERRKQGKEILDFKK # KQEEDKTKRLLDERNKEKAEEKAARERVKQQIALRAWTLEDRADRAARYAQNQEELETARLAALQARQAEQEARRETLNRERSTIARIQFRLPDGSSF # TNQFPSESRLQEARQFAAQEVGNRYGNFSLATMFPRREFTGEDLGKTLLELELAPSASVVLLPQTGRPAHSVVQSSEGGLWALLGSILYPLLAVWRFL # TSFLVTSQSPAPSSNPSQRPGTAPASGTAGGEPKRESLRKRTMEKRPEDFKKDGKIHRLRTQEDSEDDNNTWNGNSTQQM] # end gene g42 ### # # ----- sequence number 44 (length = 1691, name = scaffold_3_16480148-16481838) ----- # # annotation: # Sequence scaffold_3_16480148-16481838 length=1691 scaffold_3_16480148-16481838 database start_codon 601 603 . + 0 transcript_id "g_1917-T1.1"; gene_id "g_1917-T1"; scaffold_3_16480148-16481838 database intron 697 842 . + . transcript_id "g_1917-T1.1"; gene_id "g_1917-T1"; scaffold_3_16480148-16481838 database CDS 601 696 . + 0 transcript_id "g_1917-T1.1"; gene_id "g_1917-T1"; scaffold_3_16480148-16481838 database CDS 843 1091 . + 0 transcript_id "g_1917-T1.1"; gene_id "g_1917-T1"; scaffold_3_16480148-16481838 database stop_codon 1089 1091 . + 0 transcript_id "g_1917-T1.1"; gene_id "g_1917-T1"; # Predicted genes for sequence number 44 on both strands # start gene g43 scaffold_3_16480148-16481838 AUGUSTUS gene 1 1091 0.98 + . g43 scaffold_3_16480148-16481838 AUGUSTUS transcript 1 1091 0.98 + . g43.t1 scaffold_3_16480148-16481838 AUGUSTUS intron 1 561 0.99 + . transcript_id "g43.t1"; gene_id "g43"; scaffold_3_16480148-16481838 AUGUSTUS intron 697 842 1 + . transcript_id "g43.t1"; gene_id "g43"; scaffold_3_16480148-16481838 AUGUSTUS CDS 562 696 1 + 0 transcript_id "g43.t1"; gene_id "g43"; scaffold_3_16480148-16481838 AUGUSTUS CDS 843 1091 0.99 + 0 transcript_id "g43.t1"; gene_id "g43"; scaffold_3_16480148-16481838 AUGUSTUS stop_codon 1089 1091 . + 0 transcript_id "g43.t1"; gene_id "g43"; # protein sequence = [WRGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGSNMAKQLSAPYIECSSLQSENSVRDIFHVATL # ACVNKNSKNVKRSKSSRATKRISHMPNRPEMAAVASDLRKDKAKSCAVM] # end gene g43 ### # # ----- sequence number 45 (length = 7437, name = scaffold_3_17109452-17116888) ----- # # annotation: # Sequence scaffold_3_17109452-17116888 length=7437 scaffold_3_17109452-17116888 database start_codon 601 603 . + 0 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 666 1235 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 1346 2357 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 2409 2637 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 2755 3299 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 3399 3518 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 3637 3731 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 3803 4303 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database intron 4613 6808 . + . transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 601 665 . + 0 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 1236 1345 . + 1 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 2358 2408 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 2638 2754 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 3300 3398 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 3519 3636 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 3732 3802 . + 1 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 4304 4612 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database CDS 6809 6837 . + 2 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; scaffold_3_17109452-17116888 database stop_codon 6835 6837 . + 0 transcript_id "g_1920-T1.1"; gene_id "g_1920-T1"; # Predicted genes for sequence number 45 on both strands # start gene g44 scaffold_3_17109452-17116888 AUGUSTUS gene 601 6935 0.23 + . g44 scaffold_3_17109452-17116888 AUGUSTUS transcript 601 6935 0.23 + . g44.t1 scaffold_3_17109452-17116888 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 666 1235 0.96 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 1346 2357 0.6 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 2409 2637 0.82 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 2755 3299 1 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 3399 3518 1 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 3637 3731 1 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 3803 4303 1 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS intron 4974 6808 0.47 + . transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 601 665 0.98 + 0 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 1236 1345 0.61 + 1 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 2358 2408 0.73 + 2 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 2638 2754 0.84 + 2 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 3300 3398 1 + 2 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 3519 3636 1 + 2 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 3732 3802 1 + 1 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 4304 4973 0.54 + 2 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS CDS 6809 6935 0.82 + 1 transcript_id "g44.t1"; gene_id "g44"; scaffold_3_17109452-17116888 AUGUSTUS stop_codon 6933 6935 . + 0 transcript_id "g44.t1"; gene_id "g44"; # protein sequence = [MVDYYAVLGVTKTATPEDIKKAYRKQALRWHPDKNPDNKDEAERKFKELAEAYEVLSDKSKRDAYDNFGTSRPHTGSC # GSPGPDDFQGFTFTFRSPEEVFREFFGGQDPFASFFDDFPFGGMHSGFHGHPGSSRLGPGRFFSFPSSGVDFTSFSSSMDGMDGMGGASFKSVSTSTR # IVNGKRTTTKKIKENGQERTEIEEDGVLKTVLINGIKDELALALELSKREQQPSQSSPRQHLQHQPPRSPAERQPARQPARPPPAASTGPAQRSFSAA # PYFRYPEGSDEEEDEDLQLALACSLSEMEAQQRATAVYSGAWGGAGKPRERARPGAGDEGRRGGAVIREARVGRGGEERESADSVPSRPVDGGVKEDG # VKEDGGLEEEGGLEDGGLEEGGQEEGGGPDKPLNPVSPLNHLQKGSGDPSVKTSSMKKKKCGLRLPGLHWLIGHCCSLPHPPEVKHSVNFKHQLYSGN # PLEPP] # end gene g44 ### # # ----- sequence number 46 (length = 4910, name = scaffold_4_4965191-4970100) ----- # # annotation: # Sequence scaffold_4_4965191-4970100 length=4910 scaffold_4_4965191-4970100 database start_codon 601 603 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 779 936 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 1056 1540 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 1656 1747 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 1807 1897 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 1978 2498 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 2566 2691 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 2815 2982 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 3115 3210 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 3310 3426 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 3601 3904 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database intron 4088 4211 . + . transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 601 778 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 937 1055 . + 2 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 1541 1655 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 1748 1806 . + 2 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 1898 1977 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 2499 2565 . + 1 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 2692 2814 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 2983 3114 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 3211 3309 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 3427 3600 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 3905 4087 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database CDS 4212 4310 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; scaffold_4_4965191-4970100 database stop_codon 4308 4310 . + 0 transcript_id "g_1956-T1.1"; gene_id "g_1956-T1"; # Predicted genes for sequence number 46 on both strands # start gene g45 scaffold_4_4965191-4970100 AUGUSTUS gene 601 4310 0.37 + . g45 scaffold_4_4965191-4970100 AUGUSTUS transcript 601 4310 0.37 + . g45.t1 scaffold_4_4965191-4970100 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 779 936 0.98 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 1056 1540 0.8 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 1656 1747 0.52 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 1807 1897 0.52 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 1978 2498 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 2566 2691 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 2815 2982 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 3115 3210 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 3310 3426 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 3601 3904 1 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS intron 4088 4211 0.98 + . transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 601 778 0.73 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 937 1055 0.98 + 2 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 1541 1655 0.8 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 1748 1806 0.52 + 2 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 1898 1977 0.72 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 2499 2565 1 + 1 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 2692 2814 1 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 2983 3114 1 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 3211 3309 1 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 3427 3600 1 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 3905 4087 0.98 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS CDS 4212 4310 0.99 + 0 transcript_id "g45.t1"; gene_id "g45"; scaffold_4_4965191-4970100 AUGUSTUS stop_codon 4308 4310 . + 0 transcript_id "g45.t1"; gene_id "g45"; # protein sequence = [MLRETLRFLLLLTVLESTQSRGCSSFFCRKSHRVSEHKGADPGSPLFLTPYIEKGNIDEARKLSLVGPLPGANVKSYA # GYLTVNKKYNSNLYFWFFPAQETPETAPVLLWLQGGPGGTSMFGLFVEHGPYMVHKNLTVGFRDYPWTSRYSVLYIDNPVGTGFSFTDDDRGFAQNQD # DVGRDLYSALTQFFQIFPEYQSNEFYATGESYAGKYVPAIGYYIHKNNPLAKVKINFKGVAIGDGLCDPELMLGGYADFLYQTGMVDELQREYVIQQT # DSGVQFIQQQKWVEAFEVFDSLLNGDVQPYPSFFQNATGCTNYFNYMQCQEPEDQEYFSQFVTLPAVRRSIHVGNLTFHDGSLVEKHLLEDVMKSIKP # WLGVLMDNYRVLIYSGQLDVIVAAPLTERFLPTVNWTGAEEYKRAPRFHWKVQPTDTEVAGYVRQVGEFYQVIIRGGGHILPYDQPERSFDMIDRFLS # TQGWS] # end gene g45 ### # # ----- sequence number 47 (length = 5154, name = scaffold_4_5047048-5052201) ----- # # annotation: # Sequence scaffold_4_5047048-5052201 length=5154 scaffold_4_5047048-5052201 database start_codon 601 603 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 748 871 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 982 1115 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 1238 3533 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 3668 3831 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 3909 4077 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database intron 4235 4395 . + . transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 601 747 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 872 981 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 1116 1237 . + 1 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 3534 3667 . + 2 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 3832 3908 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 4078 4234 . + 1 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database CDS 4396 4554 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; scaffold_4_5047048-5052201 database stop_codon 4552 4554 . + 0 transcript_id "g_1957-T1.1"; gene_id "g_1957-T1"; # Predicted genes for sequence number 47 on both strands # start gene g46 scaffold_4_5047048-5052201 AUGUSTUS gene 601 4554 0.82 + . g46 scaffold_4_5047048-5052201 AUGUSTUS transcript 601 4554 0.82 + . g46.t1 scaffold_4_5047048-5052201 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 748 871 1 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 982 1115 1 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 1238 3533 0.84 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 3668 3831 1 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 3909 4077 1 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS intron 4235 4395 1 + . transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 601 747 0.98 + 0 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 872 981 1 + 0 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 1116 1237 0.84 + 1 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 3534 3667 1 + 2 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 3832 3908 1 + 0 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 4078 4234 1 + 1 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS CDS 4396 4554 1 + 0 transcript_id "g46.t1"; gene_id "g46"; scaffold_4_5047048-5052201 AUGUSTUS stop_codon 4552 4554 . + 0 transcript_id "g46.t1"; gene_id "g46"; # protein sequence = [MASKTHVGFIGLGNMGNPMAKNLLKHGYPVLATDVFPESCKELQELGAQILDNPAEVADKADRIITMLPSSPNVIDVY # TGPNGILKKVKKGSLLIDSSTIDPMVSKEMAVAAEKMGAVFMDAPVSGGVGAASSGKLTFMVGGAEEEFTAAKELLSCMGANVVYCGQVGTGQAAKIC # NNMLLAIGMIGTSETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSGNNYQGGFGTQLMAKDLGLAQHTATNTKTPVPLGSLAHQI # YRMMCARGYAGKDFSSVFQFLRDEEGQ] # end gene g46 ### # # ----- sequence number 48 (length = 6479, name = scaffold_4_5348746-5355224) ----- # # annotation: # Sequence scaffold_4_5348746-5355224 length=6479 scaffold_4_5348746-5355224 database start_codon 601 603 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 650 1181 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 1403 1485 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 1645 1782 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 1913 2092 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 2151 2259 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 2405 2554 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 2666 3353 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 3479 3650 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 3784 4037 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 4114 4197 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 4294 4495 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 4629 4797 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 4910 5001 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 5059 5186 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 5293 5519 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database intron 5691 5778 . + . transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 601 649 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 1182 1402 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 1486 1644 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 1783 1912 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 2093 2150 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 2260 2404 . + 1 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 2555 2665 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 3354 3478 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 3651 3783 . + 1 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 4038 4113 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 4198 4293 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 4496 4628 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 4798 4909 . + 1 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 5002 5058 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 5187 5292 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 5520 5690 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database CDS 5779 5879 . + 2 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; scaffold_4_5348746-5355224 database stop_codon 5877 5879 . + 0 transcript_id "g_1961-T1.1"; gene_id "g_1961-T1"; # Predicted genes for sequence number 48 on both strands # start gene g47 scaffold_4_5348746-5355224 AUGUSTUS gene 601 5879 0.91 + . g47 scaffold_4_5348746-5355224 AUGUSTUS transcript 601 5879 0.91 + . g47.t1 scaffold_4_5348746-5355224 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 650 1181 0.99 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 1403 1485 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 1645 1782 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 1913 2092 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 2151 2259 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 2405 2554 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 2666 3290 0.99 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 3479 3650 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 3784 4037 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 4114 4495 0.93 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 4629 4797 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 4910 5001 0.99 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 5059 5186 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 5293 5519 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS intron 5691 5778 1 + . transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 601 649 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 1182 1402 1 + 2 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 1486 1644 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 1783 1912 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 2093 2150 1 + 2 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 2260 2404 1 + 1 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 2555 2665 0.99 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 3291 3478 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 3651 3783 1 + 1 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 4038 4113 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 4496 4628 1 + 2 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 4798 4909 0.99 + 1 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 5002 5058 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 5187 5292 1 + 0 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 5520 5690 1 + 2 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS CDS 5779 5879 1 + 2 transcript_id "g47.t1"; gene_id "g47"; scaffold_4_5348746-5355224 AUGUSTUS stop_codon 5877 5879 . + 0 transcript_id "g47.t1"; gene_id "g47"; # protein sequence = [MGKKHKKHKPEWRTVDDYEDKPLEKPLKLVLKVGGSEVTELSGSGHDSSFYDDRSDHERERHKDKKKKKKKKSEKDKD # KHVDDEERRRRKEEKRKKREREQNEVEAATTAAATTVSAPGTAVAVEPFMLPIVPKSIGISIGMELEEKKRKRERFEMAPEMDEFHPSIKVEVEQQGD # RPVRSCRTQQESECTPRQQLLEHFLRQLQRKDPHGFFSFPVTDAIAPGYSMIIKHPMDFSTMKDKITTNEYKTITEFKADFKLMCDNAMVYNRPETVY # YKAAKKLLHTGFKMMSKERLLALKRSMSFMQDMDFSQQAAILGDEDITAEIPVPEVVPLPLESAKKSKKQPVKDMKEVISYLFEPEGNACSLTDSTAE # EHVLALVEHAADEARDRINRYMPSSKMGYLRKETDGSLVYNVVNQLDPDLEVTFLSSAYNTQSLQNNSIYPDLLPDEMDVLYSAYGDDTGVQCALSIQ # EFVKGCGSTTKRLVDGLLDKMTAGDHSKAVFQIRQKRNMAVKPDETKNSICDMQVADGTGLGESGSVLDFMSMKSYSDMSLDISMLNTLGKVVKKEPE # QEEGQQHFDEAAKLLQEFQDAQVDRVGSRPSSNLSSLSNTSERDQHHLGSPSHLGVGDQSEMVHDPYEFLQSPEPGPTANS] # end gene g47 ### # # ----- sequence number 49 (length = 11132, name = scaffold_4_6939025-6950156) ----- # # annotation: # Sequence scaffold_4_6939025-6950156 length=11132 scaffold_4_6939025-6950156 database start_codon 601 603 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 825 1184 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 1273 3299 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 3341 3815 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 3902 4868 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 4922 5010 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 5117 7107 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 7237 7671 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 7747 7870 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 7975 8173 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 8213 8375 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 8418 8543 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 8589 8667 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 8781 8999 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 9066 9231 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 9320 10233 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database intron 10297 10367 . + . transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 601 824 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 1185 1272 . + 1 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 3300 3340 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 3816 3901 . + 1 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 4869 4921 . + 2 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 5011 5116 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 7108 7236 . + 2 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 7672 7746 . + 2 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 7871 7974 . + 2 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 8174 8212 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 8376 8417 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 8544 8588 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 8668 8780 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 9000 9065 . + 1 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 9232 9319 . + 1 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 10234 10296 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database CDS 10368 10532 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; scaffold_4_6939025-6950156 database stop_codon 10530 10532 . + 0 transcript_id "g_1973-T1.1"; gene_id "g_1973-T1"; # Predicted genes for sequence number 49 on both strands # start gene g48 scaffold_4_6939025-6950156 AUGUSTUS gene 3888 10532 0.02 + . g48 scaffold_4_6939025-6950156 AUGUSTUS transcript 3888 10532 0.02 + . g48.t1 scaffold_4_6939025-6950156 AUGUSTUS start_codon 3888 3890 . + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 4033 4868 0.97 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 4922 5010 0.99 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 5117 6173 0.46 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 6272 7154 0.21 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 7237 7671 1 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 7747 7870 1 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 7975 8173 0.7 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 8213 8543 0.55 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 8589 8667 0.86 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 8781 8999 0.94 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 9066 9231 1 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 9320 10233 1 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS intron 10297 10367 1 + . transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 3888 4032 0.23 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 4869 4921 0.99 + 2 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 5011 5116 1 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 6174 6271 0.24 + 2 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 7155 7236 0.21 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 7672 7746 1 + 2 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 7871 7974 0.97 + 2 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 8174 8212 0.73 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 8544 8588 0.86 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 8668 8780 0.99 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 9000 9065 0.95 + 1 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 9232 9319 1 + 1 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 10234 10296 1 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS CDS 10368 10532 1 + 0 transcript_id "g48.t1"; gene_id "g48"; scaffold_4_6939025-6950156 AUGUSTUS stop_codon 10530 10532 . + 0 transcript_id "g48.t1"; gene_id "g48"; # protein sequence = [MPRHRYSILAPVELSTSMPFTSPLLSPLHPSSGSGEEGKIEEEEEEEGMANVFILVSLYTERWLSMGSFGERLGLLIH # TTNLSVILAFPAFVVLMVESITPACPFPLICRLSGRALRRAICRLYLLRARCSDIKLYSYKDVNRWCREMSHAKVRSLARSLSCPSWQSAKGGVEQTQ # VCYPGNLKIRDLYYFVFAPTLCYELNFPRSPRIRVSFLLRRLFEMLFFTQLLVGLTQQDMDLSRMMERLLRLAVPNHLLWLIFFYSFFHSTLNFTAEV # LRFGDREFYRDWWNSETVPYFWQNWNIPVHKWCLRHFYKPLLRKGVSKWASQSAVFFASAFFHEYLVSVPLKMFRLWAFTGMMAQLPLAWFVARFLSG # NYGNAAVWISLIIGQPIAVLMYVHDYYVLHHRVETEAPGTL] # end gene g48 ### # # ----- sequence number 50 (length = 5970, name = scaffold_4_10854419-10860388) ----- # # annotation: # Sequence scaffold_4_10854419-10860388 length=5970 scaffold_4_10854419-10860388 database start_codon 601 603 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database intron 655 3553 . + . transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database intron 3680 4293 . + . transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database intron 4447 4666 . + . transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database intron 4763 4953 . + . transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database intron 5028 5234 . + . transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 601 654 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 3554 3679 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 4294 4446 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 4667 4762 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 4954 5027 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database CDS 5235 5370 . + 1 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; scaffold_4_10854419-10860388 database stop_codon 5368 5370 . + 0 transcript_id "g_1992-T1.1"; gene_id "g_1992-T1"; # Predicted genes for sequence number 50 on both strands # start gene g49 scaffold_4_10854419-10860388 AUGUSTUS gene 2146 5370 0.28 + . g49 scaffold_4_10854419-10860388 AUGUSTUS transcript 2146 5370 0.28 + . g49.t1 scaffold_4_10854419-10860388 AUGUSTUS start_codon 2146 2148 . + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 2159 2435 0.46 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 2513 3553 0.33 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 3680 4293 1 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 4447 4666 1 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 4763 4953 1 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS intron 5028 5234 1 + . transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 2146 2158 0.48 + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 2436 2512 0.28 + 2 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 3554 3679 0.81 + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 4294 4446 1 + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 4667 4762 1 + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 4954 5027 1 + 0 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS CDS 5235 5370 1 + 1 transcript_id "g49.t1"; gene_id "g49"; scaffold_4_10854419-10860388 AUGUSTUS stop_codon 5368 5370 . + 0 transcript_id "g49.t1"; gene_id "g49"; # protein sequence = [MSARVSLTEYHRRIDALNSEDLRSLCKRLQITTKEEVNSKHGVSIKTELEPETFRPNLSEPSDLLEADQIEKLAKNLP # PRTIGYPWTLAFGTSKHGMSIKSLYRAMQGQDTPVLMVIKDSDGQVFGALASEPFKVSEGFYGTGETFLFSFSPEFEVYKWTGDNMFFMKGDMDSLAF # GGGSGEFGLWLDGDLYHGRSHSCKTFGNPMLSKKEDFYVQDIEIWSFE] # end gene g49 ### # # ----- sequence number 51 (length = 4783, name = scaffold_4_10917167-10921949) ----- # # annotation: # Sequence scaffold_4_10917167-10921949 length=4783 scaffold_4_10917167-10921949 database start_codon 601 603 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 703 920 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 1095 1473 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 1647 1788 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 1924 2059 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 2142 2321 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 2397 2802 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 2969 3380 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 3497 3735 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database intron 3954 4068 . + . transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 601 702 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 921 1094 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 1474 1646 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 1789 1923 . + 1 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 2060 2141 . + 1 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 2322 2396 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 2803 2968 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 3381 3496 . + 2 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 3736 3953 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database CDS 4069 4183 . + 1 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; scaffold_4_10917167-10921949 database stop_codon 4181 4183 . + 0 transcript_id "g_1993-T1.1"; gene_id "g_1993-T1"; # Predicted genes for sequence number 51 on both strands # start gene g50 scaffold_4_10917167-10921949 AUGUSTUS gene 601 4183 1 + . g50 scaffold_4_10917167-10921949 AUGUSTUS transcript 601 4183 1 + . g50.t1 scaffold_4_10917167-10921949 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 703 920 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 1095 1473 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 1647 1788 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 1924 2059 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 2142 2321 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 2397 2802 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 2969 3380 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 3497 3735 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS intron 3954 4068 1 + . transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 601 702 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 921 1094 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 1474 1646 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 1789 1923 1 + 1 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 2060 2141 1 + 1 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 2322 2396 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 2803 2968 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 3381 3496 1 + 2 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 3736 3953 1 + 0 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS CDS 4069 4183 1 + 1 transcript_id "g50.t1"; gene_id "g50"; scaffold_4_10917167-10921949 AUGUSTUS stop_codon 4181 4183 . + 0 transcript_id "g50.t1"; gene_id "g50"; # protein sequence = [MKGLADDASCSVALLDGAVALSDVVENHIYEQTLAEKSMFFVADLGVVLRQHVLWKTHMTQIRPYYTVRCNTSPAVIE # LLAALGTGFVCANKSELELVLGFGVPSEDIVYSGVCKQLSQIKYAAKNGIDLLVCDNDAELRKIARCHPSAKLLLQVATEASSQAEELGVTPGSSLKE # CRHLLDSAKQLGMQVVGARFHIPASCADPEVYVHAISDARCVFDMGEDVGFSLKVLDIGGGFSGSEDQLQQIESAVHPLMQLYFPASSGVSVIAEPGA # FFVSSAFTLAVNIVAKEVVSRDRQGQSHDELSANDEPEFLYYMSDGVYGSFASKLTDALIPAPTVHKGPGPEEPVFSSSLWGPSGDDLDQVVEQCLLP # ELSVGDWLLFHRAGAYGLGQPCSSSPDTDRPPVYYVISTGDWFEMQEAGVSQEITVKSFSLIPYFLHPSQSEGALSVPA] # end gene g50 ### # # ----- sequence number 52 (length = 3220, name = scaffold_4_12459354-12462573) ----- # # annotation: # Sequence scaffold_4_12459354-12462573 length=3220 scaffold_4_12459354-12462573 database start_codon 601 603 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database intron 715 1418 . + . transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database intron 1596 1815 . + . transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database intron 1915 2265 . + . transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database intron 2348 2606 . + . transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database CDS 601 714 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database CDS 1419 1595 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database CDS 1816 1914 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database CDS 2266 2347 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database CDS 2607 2620 . + 2 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; scaffold_4_12459354-12462573 database stop_codon 2618 2620 . + 0 transcript_id "g_1999-T1.1"; gene_id "g_1999-T1"; # Predicted genes for sequence number 52 on both strands # start gene g51 scaffold_4_12459354-12462573 AUGUSTUS gene 667 2620 0.4 + . g51 scaffold_4_12459354-12462573 AUGUSTUS transcript 667 2620 0.4 + . g51.t1 scaffold_4_12459354-12462573 AUGUSTUS start_codon 667 669 . + 0 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS intron 715 1418 0.88 + . transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS intron 1596 1815 1 + . transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS intron 1915 2265 0.86 + . transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS intron 2348 2606 0.82 + . transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS CDS 667 714 0.47 + 0 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS CDS 1419 1595 1 + 0 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS CDS 1816 1914 0.99 + 0 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS CDS 2266 2347 0.84 + 0 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS CDS 2607 2620 0.82 + 2 transcript_id "g51.t1"; gene_id "g51"; scaffold_4_12459354-12462573 AUGUSTUS stop_codon 2618 2620 . + 0 transcript_id "g51.t1"; gene_id "g51"; # protein sequence = [MGYVRSTQGLLKIAQMVTLLIAFLCVHLARGWTDWSAFRYFEVVTLWFLIAFLIFYFMYLLRLHSKIPCINWTLTEFF # HYAVGTILVGIASIVAAVKSHNVPELVAGSVFGFIATFLLAVSLWTTNKVSCGSQSTSASV] # end gene g51 ### # # ----- sequence number 53 (length = 2100, name = scaffold_4_12792259-12794358) ----- # # annotation: # Sequence scaffold_4_12792259-12794358 length=2100 scaffold_4_12792259-12794358 database start_codon 601 603 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database intron 796 960 . + . transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database intron 1069 1149 . + . transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database intron 1297 1404 . + . transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database CDS 601 795 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database CDS 961 1068 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database CDS 1150 1296 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database CDS 1405 1500 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; scaffold_4_12792259-12794358 database stop_codon 1498 1500 . + 0 transcript_id "g_2004-T1.1"; gene_id "g_2004-T1"; # Predicted genes for sequence number 53 on both strands # start gene g52 scaffold_4_12792259-12794358 AUGUSTUS gene 119 1500 0.54 + . g52 scaffold_4_12792259-12794358 AUGUSTUS transcript 119 1500 0.54 + . g52.t1 scaffold_4_12792259-12794358 AUGUSTUS start_codon 119 121 . + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS intron 248 600 0.99 + . transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS intron 796 960 0.74 + . transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS intron 1069 1149 1 + . transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS intron 1297 1404 1 + . transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS CDS 119 247 0.72 + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS CDS 601 795 0.74 + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS CDS 961 1068 1 + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS CDS 1150 1296 1 + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS CDS 1405 1500 1 + 0 transcript_id "g52.t1"; gene_id "g52"; scaffold_4_12792259-12794358 AUGUSTUS stop_codon 1498 1500 . + 0 transcript_id "g52.t1"; gene_id "g52"; # protein sequence = [MSADMSPSLVNWMTSMMTMRLQVILEHMPVTEDQILHYVVHTPMEDTLSPVPATTAEEAMSSSWDTRASARESGPTEG # SVPLRGAMAAEAVDEEPVRDPEAWAVTVPPEWVPIIRHDLITQRKIKTQPPMSDAYLHGMPAKRRKTGQGEGALLSLSDAVSRAAKTAGVKPVTPSDS # LQEELESDELQEAYAEQVKADIKKRVREDPDFTHQQFPNTHRAFSSDS] # end gene g52 ### # # ----- sequence number 54 (length = 3797, name = scaffold_4_14079177-14082973) ----- # # annotation: # Sequence scaffold_4_14079177-14082973 length=3797 scaffold_4_14079177-14082973 database start_codon 601 603 . + 0 transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database intron 658 2613 . + . transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database intron 2737 3029 . + . transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database CDS 601 657 . + 0 transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database CDS 2614 2736 . + 0 transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database CDS 3030 3197 . + 0 transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; scaffold_4_14079177-14082973 database stop_codon 3195 3197 . + 0 transcript_id "g_2016-T1.1"; gene_id "g_2016-T1"; # Predicted genes for sequence number 54 on both strands # start gene g53 scaffold_4_14079177-14082973 AUGUSTUS gene 601 3197 0.77 + . g53 scaffold_4_14079177-14082973 AUGUSTUS transcript 601 3197 0.77 + . g53.t1 scaffold_4_14079177-14082973 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS intron 658 2613 0.86 + . transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS intron 2737 3029 1 + . transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS CDS 601 657 0.78 + 0 transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS CDS 2614 2736 0.94 + 0 transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS CDS 3030 3197 1 + 0 transcript_id "g53.t1"; gene_id "g53"; scaffold_4_14079177-14082973 AUGUSTUS stop_codon 3195 3197 . + 0 transcript_id "g53.t1"; gene_id "g53"; # protein sequence = [MSSENLNSDTHMDYDDEKQDSQEKNANPVMAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKDKMNK # QLPVARPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG] # end gene g53 ### # # ----- sequence number 55 (length = 4413, name = scaffold_4_14431112-14435524) ----- # # annotation: # Sequence scaffold_4_14431112-14435524 length=4413 scaffold_4_14431112-14435524 database start_codon 601 603 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 630 872 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 970 1552 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 1660 2094 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 2186 2377 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 2497 2654 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 2737 2850 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 3003 3177 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 3341 3555 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database intron 3654 3743 . + . transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 601 629 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 873 969 . + 1 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 1553 1659 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 2095 2185 . + 1 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 2378 2496 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 2655 2736 . + 1 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 2851 3002 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 3178 3340 . + 1 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 3556 3653 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database CDS 3744 3813 . + 1 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; scaffold_4_14431112-14435524 database stop_codon 3811 3813 . + 0 transcript_id "g_2019-T1.1"; gene_id "g_2019-T1"; # Predicted genes for sequence number 55 on both strands # start gene g54 scaffold_4_14431112-14435524 AUGUSTUS gene 601 3813 0.49 + . g54 scaffold_4_14431112-14435524 AUGUSTUS transcript 601 3813 0.49 + . g54.t1 scaffold_4_14431112-14435524 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 630 872 0.88 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 970 1552 0.93 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 1660 2094 1 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 2186 2377 0.97 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 2497 2654 1 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 2737 2850 1 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 3003 3177 0.99 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 3341 3555 1 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS intron 3654 3743 1 + . transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 601 629 0.55 + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 873 969 0.93 + 1 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 1553 1659 1 + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 2095 2185 1 + 1 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 2378 2496 0.97 + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 2655 2736 1 + 1 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 2851 3002 1 + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 3178 3340 0.99 + 1 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 3556 3653 1 + 0 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS CDS 3744 3813 1 + 1 transcript_id "g54.t1"; gene_id "g54"; scaffold_4_14431112-14435524 AUGUSTUS stop_codon 3811 3813 . + 0 transcript_id "g54.t1"; gene_id "g54"; # protein sequence = [MSDLCVGINGFGRIGRLVLRACLQKGIKVVAINDPFIDLKYMVYMFKYDSTHGRYHGEVREEGDKLIVDDQEISVFQC # MKPAEIPWGDSGALYVVESTGVFLSVEKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKYDPSSMNIVSNASCTTNCLAPLAKVIQDNFGIEEALMT # TVHAYTATQKTVDGPSAKAWRDGRGAHQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVADVSVVDLTCRLSRPASYAAIKESVKKAAHGPMKGIL # GYTEDSVVSSDFIGDTHSSIFDAGAGISLNDNFVKLISWYDNEFGYSHRVADLLMYMHSKE] # end gene g54 ### # # ----- sequence number 56 (length = 4702, name = scaffold_4_14607920-14612621) ----- # # annotation: # Sequence scaffold_4_14607920-14612621 length=4702 scaffold_4_14607920-14612621 database start_codon 601 603 . + 0 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 657 1400 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 1455 1596 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 1648 1724 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 1786 1874 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 2008 2519 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 2653 3004 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 3028 3250 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 3404 3496 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database intron 3653 3812 . + . transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 601 656 . + 0 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 1401 1454 . + 1 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 1597 1647 . + 1 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 1725 1785 . + 1 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 1875 2007 . + 0 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 2520 2652 . + 2 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 3005 3027 . + 1 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 3251 3403 . + 2 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 3497 3652 . + 2 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database CDS 3813 4102 . + 2 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; scaffold_4_14607920-14612621 database stop_codon 4100 4102 . + 0 transcript_id "g_2024-T1.1"; gene_id "g_2024-T1"; # Predicted genes for sequence number 56 on both strands # start gene g55 scaffold_4_14607920-14612621 AUGUSTUS gene 1 4102 0.22 + . g55 scaffold_4_14607920-14612621 AUGUSTUS transcript 1 4102 0.22 + . g55.t1 scaffold_4_14607920-14612621 AUGUSTUS intron 1 1400 0.29 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 1455 1596 0.96 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 1648 1724 0.86 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 1786 1874 0.98 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 2008 2519 0.92 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 2653 3004 1 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 3028 3250 1 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 3404 3496 1 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS intron 3653 3812 0.96 + . transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 1401 1454 0.7 + 1 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 1597 1647 0.97 + 1 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 1725 1785 0.86 + 1 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 1875 2007 1 + 0 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 2520 2652 1 + 2 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 3005 3027 1 + 1 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 3251 3403 1 + 2 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 3497 3652 1 + 2 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS CDS 3813 4102 0.96 + 2 transcript_id "g55.t1"; gene_id "g55"; scaffold_4_14607920-14612621 AUGUSTUS stop_codon 4100 4102 . + 0 transcript_id "g55.t1"; gene_id "g55"; # protein sequence = [IKTLGDKSKDSKVKRKPRHEEHLPQFSAGVELLSRYEDTWVALHRRSKDCAKAGESVDGEVVMLSAHWEKRRAALVDL # EEQLQQIPAFLSDLETITSRIAHLEGDFEEMESRLLYLENLCAQCEQQRFKQHHCLQLENYKKKKRKELEALKADLNSEHAQKVLEMEHAQQQKLKER # QKFFEEAFQQDMEKYLSSGYLQLKEGGAQDPTGSPSPTKVSVEALEQVELAVLSDQEALDVFLNSADDIVSTTSSLTSGPDPESWSSDLSMKEADNRE # RLGSSLCTEPSTQESEGRGLEKEASEESGEEQMVQSDEEEVQLDSALVVLPEPLKTCESSDSDSQTSEPVAELPPG] # end gene g55 ### # # ----- sequence number 57 (length = 3619, name = scaffold_4_16665279-16668897) ----- # # annotation: # Sequence scaffold_4_16665279-16668897 length=3619 scaffold_4_16665279-16668897 database start_codon 427 429 . + 0 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database intron 503 1063 . + . transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database intron 1249 1599 . + . transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database intron 1702 2965 . + . transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database CDS 427 502 . + 0 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database CDS 1064 1248 . + 2 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database CDS 1600 1701 . + 0 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database CDS 2966 3019 . + 0 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; scaffold_4_16665279-16668897 database stop_codon 3017 3019 . + 0 transcript_id "g_2038-T1.1"; gene_id "g_2038-T1"; # Predicted genes for sequence number 57 on both strands # start gene g56 scaffold_4_16665279-16668897 AUGUSTUS gene 478 3019 0.66 + . g56 scaffold_4_16665279-16668897 AUGUSTUS transcript 478 3019 0.66 + . g56.t1 scaffold_4_16665279-16668897 AUGUSTUS start_codon 478 480 . + 0 transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS intron 503 1063 0.93 + . transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS intron 1249 1599 1 + . transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS intron 1702 2965 0.9 + . transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS CDS 478 502 0.73 + 0 transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS CDS 1064 1248 0.99 + 2 transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS CDS 1600 1701 0.92 + 0 transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS CDS 2966 3019 0.91 + 0 transcript_id "g56.t1"; gene_id "g56"; scaffold_4_16665279-16668897 AUGUSTUS stop_codon 3017 3019 . + 0 transcript_id "g56.t1"; gene_id "g56"; # protein sequence = [MDSYLAALDINFALRKIVCLLKPTKQINHDPATGSVKIRTITTFKNFDMDFKLGQTFTEDLGPVDGRVCQTTVDWQGD # KLLCVQKGEKEGRGWTHWLEGNMLHLEMRVQDVVAKQVFKKAE] # end gene g56 ### # # ----- sequence number 58 (length = 4478, name = scaffold_5_4874708-4879185) ----- # # annotation: # Sequence scaffold_5_4874708-4879185 length=4478 scaffold_5_4874708-4879185 database start_codon 601 603 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 647 965 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 1077 1250 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 1338 1488 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 1593 1721 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 1817 1955 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 2050 2167 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 2317 2416 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 2565 3137 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 3259 3379 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database intron 3487 3728 . + . transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 601 646 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 966 1076 . + 2 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 1251 1337 . + 2 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 1489 1592 . + 2 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 1722 1816 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 1956 2049 . + 1 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 2168 2316 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 2417 2564 . + 1 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 3138 3258 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 3380 3486 . + 2 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database CDS 3729 3878 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; scaffold_5_4874708-4879185 database stop_codon 3876 3878 . + 0 transcript_id "g_2072-T1.1"; gene_id "g_2072-T1"; # Predicted genes for sequence number 58 on both strands # start gene g57 scaffold_5_4874708-4879185 AUGUSTUS gene 601 3878 0.37 + . g57 scaffold_5_4874708-4879185 AUGUSTUS transcript 601 3878 0.37 + . g57.t1 scaffold_5_4874708-4879185 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 647 965 0.95 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 1077 1250 0.96 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 1338 1488 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 1593 1721 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 1817 1955 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 2050 2167 0.99 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 2317 2416 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 2565 3137 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 3259 3379 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS intron 3487 3728 1 + . transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 601 646 0.38 + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 966 1076 0.96 + 2 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 1251 1337 1 + 2 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 1489 1592 1 + 2 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 1722 1816 1 + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 1956 2049 1 + 1 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 2168 2316 0.99 + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 2417 2564 1 + 1 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 3138 3258 1 + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 3380 3486 1 + 2 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS CDS 3729 3878 1 + 0 transcript_id "g57.t1"; gene_id "g57"; scaffold_5_4874708-4879185 AUGUSTUS stop_codon 3876 3878 . + 0 transcript_id "g57.t1"; gene_id "g57"; # protein sequence = [MNIRDTHSIFFRSLADRGFDLTFKSADDSSLSLIKYGQFLYDHLVIFAPSVEDFGGNINVETITAFIDGGGNVLVAAS # SDIGDPLRELGSECGVEFDEEKTAVIDHHNYDVSDPGDHTLIVADPENLLKASTIVGKATDKPILFKGVGMVADPENPLVLDILTASSTSYSYFPDRP # ITQYPHAVGKNTLLIAGLQARNNARVVFSGSLLFFSDAFFNSAVQKATPGSQGHAQNGNMELAVALSRWVFKEAGVLRVGAVSHHPVGEINPPAAYTI # TDLVEYNIVIEMLSDGHWVPFDGDDIQLEFVRIDPFVRTYLKKNGGKYRVQFKLPDVYGVFQFKVDYNRLGFTHLYSSTQVSVRPLQHTQYERFIPSA # YPYYASVFSMMAGLFVFSIVFLHMKEKEKSD] # end gene g57 ### # # ----- sequence number 59 (length = 3300, name = scaffold_5_5034097-5037396) ----- # # annotation: # Sequence scaffold_5_5034097-5037396 length=3300 scaffold_5_5034097-5037396 database start_codon 601 603 . + 0 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database intron 708 1847 . + . transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database intron 2062 2236 . + . transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database intron 2409 2599 . + . transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database CDS 601 707 . + 0 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database CDS 1848 2061 . + 1 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database CDS 2237 2408 . + 0 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database CDS 2600 2700 . + 2 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; scaffold_5_5034097-5037396 database stop_codon 2698 2700 . + 0 transcript_id "g_2073-T1.1"; gene_id "g_2073-T1"; # Predicted genes for sequence number 59 on both strands # start gene g58 scaffold_5_5034097-5037396 AUGUSTUS gene 601 2700 0.55 + . g58 scaffold_5_5034097-5037396 AUGUSTUS transcript 601 2700 0.55 + . g58.t1 scaffold_5_5034097-5037396 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS intron 708 1772 0.58 + . transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS intron 2062 2236 1 + . transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS intron 2409 2599 1 + . transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS CDS 601 707 0.95 + 0 transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS CDS 1773 2061 0.59 + 1 transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS CDS 2237 2408 1 + 0 transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS CDS 2600 2700 1 + 2 transcript_id "g58.t1"; gene_id "g58"; scaffold_5_5034097-5037396 AUGUSTUS stop_codon 2698 2700 . + 0 transcript_id "g58.t1"; gene_id "g58"; # protein sequence = [MEQQRQRSLSTSGESLYQVLGVDKNATPEDIKKCYRQARGSAWGSEFHVLVLICADCRFPRKLALKFHPDKNPDNPEA # ADKFKEINNAHAILSDCTKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKALFIFCGVATGCYFCCCLCCCCNCCCGKCKPRPPMEQEPEFYVS # PEDLEAQMTTDERDGGEPVMMQPSSATETTQLTSDGHHSSYRTDAY] # end gene g58 ### # # ----- sequence number 60 (length = 7144, name = scaffold_5_5040004-5047147) ----- # # annotation: # Sequence scaffold_5_5040004-5047147 length=7144 scaffold_5_5040004-5047147 database start_codon 601 603 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 775 3011 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 3167 3355 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 3531 3670 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 3767 3877 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 4112 4349 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 4373 4503 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 4626 4763 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database intron 5138 6457 . + . transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 601 774 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 3012 3166 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 3356 3530 . + 1 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 3671 3766 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 3878 4111 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 4350 4372 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 4504 4625 . + 1 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 4764 5137 . + 2 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database CDS 6458 6544 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; scaffold_5_5040004-5047147 database stop_codon 6542 6544 . + 0 transcript_id "g_2074-T1.1"; gene_id "g_2074-T1"; # Predicted genes for sequence number 60 on both strands # start gene g59 scaffold_5_5040004-5047147 AUGUSTUS gene 601 1175 0.45 + . g59 scaffold_5_5040004-5047147 AUGUSTUS transcript 601 1175 0.45 + . g59.t1 scaffold_5_5040004-5047147 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g59.t1"; gene_id "g59"; scaffold_5_5040004-5047147 AUGUSTUS intron 788 978 0.5 + . transcript_id "g59.t1"; gene_id "g59"; scaffold_5_5040004-5047147 AUGUSTUS CDS 601 787 0.6 + 0 transcript_id "g59.t1"; gene_id "g59"; scaffold_5_5040004-5047147 AUGUSTUS CDS 979 1175 0.45 + 2 transcript_id "g59.t1"; gene_id "g59"; scaffold_5_5040004-5047147 AUGUSTUS stop_codon 1173 1175 . + 0 transcript_id "g59.t1"; gene_id "g59"; # protein sequence = [MSMSVPLELSSLQKDQQALDTLEKQLICPICLEVFTKPVVILPCQHNLCRKCANDLYQVSSPASVPHVLELAGSCCGV # MRVTREIQRKRLLDLLRAHISITYCTPPPPAHPHTPHINSRPWLAQHSA] # end gene g59 ### # start gene g60 scaffold_5_5040004-5047147 AUGUSTUS gene 2706 6060 0.18 + . g60 scaffold_5_5040004-5047147 AUGUSTUS transcript 2706 6060 0.18 + . g60.t1 scaffold_5_5040004-5047147 AUGUSTUS start_codon 2706 2708 . + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 2790 3026 0.66 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 3167 3355 1 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 3531 3670 0.56 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 3767 3877 1 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 4112 4349 1 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 4373 4503 1 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 4626 4901 0.89 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS intron 5138 5421 0.99 + . transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 2706 2789 0.42 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 3027 3166 0.85 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 3356 3530 0.56 + 1 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 3671 3766 1 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 3878 4111 1 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 4350 4372 1 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 4504 4625 1 + 1 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 4902 5137 0.89 + 2 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS CDS 5422 6060 0.83 + 0 transcript_id "g60.t1"; gene_id "g60"; scaffold_5_5040004-5047147 AUGUSTUS stop_codon 6058 6060 . + 0 transcript_id "g60.t1"; gene_id "g60"; # protein sequence = [MFGLGMNVRDPSSSSPDADTVLQMLIPLTRSNMVGRFRCPSCRQEVVLDRHGVYGLQRNLLVENIIDAYKQEANGLRP # PPKSSDHVTCEEHKGERVNIFCLSCQKPTCSLCKVFGAHMACQVAPLPEVYQQQKSELTDGISSLVSVNSRIQASISELEETCRNIEENCKTQKQALC # DKFDRMYAILEERRNVMTQRISHEQEEKMGHTQELVRSNGSNVQVNTKLVETALRTLEEPEMAAFVQSSRELIEKVLEAAKSTTIQSLEPGYENMDHY # KVDFNAEERTLHQLDFKVSSLVVHSPQEADVTMTSEELSLKDPGADYGDEDEKLEEEEEVEEEEEEEEKIRGQAEGCVADSCKEYLCEADGMNIQQTE # PERWQHDEPDSGAWAAQGMVMGGAREEETRFYPSWYSPNAWHGLSPSPMVKIKPLAVPENTPQLYKEPQPQSPFLPQYQPQQLSLTQQTPPIPIPRWL # EASPDDQTSEVAGGLGSTSTGGHRGCVSQTGVEGESPGPERGVTQVREGGPGLEESAVSRVDSGPSTPQQVSLIQTGRRHSLHHHPSSHFLPTLLLLR # PPLPLPPPHVTVVS] # end gene g60 ### # # ----- sequence number 61 (length = 2146, name = scaffold_5_5060604-5062749) ----- # # annotation: # Sequence scaffold_5_5060604-5062749 length=2146 scaffold_5_5060604-5062749 database start_codon 601 603 . + 0 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database intron 656 802 . + . transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database intron 881 1225 . + . transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database intron 1326 1437 . + . transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database CDS 601 655 . + 0 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database CDS 803 880 . + 2 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database CDS 1226 1325 . + 2 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database CDS 1438 1546 . + 1 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; scaffold_5_5060604-5062749 database stop_codon 1544 1546 . + 0 transcript_id "g_2075-T1.1"; gene_id "g_2075-T1"; # Predicted genes for sequence number 61 on both strands # start gene g61 scaffold_5_5060604-5062749 AUGUSTUS gene 601 1546 0.59 + . g61 scaffold_5_5060604-5062749 AUGUSTUS transcript 601 1546 0.59 + . g61.t1 scaffold_5_5060604-5062749 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS intron 656 802 0.85 + . transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS intron 881 1225 1 + . transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS intron 1326 1440 0.74 + . transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS CDS 601 655 0.78 + 0 transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS CDS 803 880 1 + 2 transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS CDS 1226 1325 1 + 2 transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS CDS 1441 1546 0.74 + 1 transcript_id "g61.t1"; gene_id "g61"; scaffold_5_5060604-5062749 AUGUSTUS stop_codon 1544 1546 . + 0 transcript_id "g61.t1"; gene_id "g61"; # protein sequence = [MAAIPASGSLVATTDYYRRRLGSTSSSSSCGSSEYSGEVIPHHPGLPKQDSGHWWSSFFFGKQNQPGMTTLTEEANQK # VGVVTNGQVTCVAREMVMRQASESSEAGSPPPSS] # end gene g61 ### # # ----- sequence number 62 (length = 2816, name = scaffold_5_5596707-5599522) ----- # # annotation: # Sequence scaffold_5_5596707-5599522 length=2816 scaffold_5_5596707-5599522 database start_codon 601 603 . + 0 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database intron 718 819 . + . transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database intron 924 1002 . + . transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database intron 1113 1301 . + . transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database intron 1506 2094 . + . transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database CDS 601 717 . + 0 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database CDS 820 923 . + 0 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database CDS 1003 1112 . + 1 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database CDS 1302 1505 . + 2 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database CDS 2095 2216 . + 2 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; scaffold_5_5596707-5599522 database stop_codon 2214 2216 . + 0 transcript_id "g_2077-T1.1"; gene_id "g_2077-T1"; # Predicted genes for sequence number 62 on both strands # start gene g62 scaffold_5_5596707-5599522 AUGUSTUS gene 832 2216 0.46 + . g62 scaffold_5_5596707-5599522 AUGUSTUS transcript 832 2216 0.46 + . g62.t1 scaffold_5_5596707-5599522 AUGUSTUS start_codon 832 834 . + 0 transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS intron 924 1002 0.99 + . transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS intron 1113 2094 0.61 + . transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS CDS 832 923 0.77 + 0 transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS CDS 1003 1112 0.99 + 1 transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS CDS 2095 2216 0.97 + 2 transcript_id "g62.t1"; gene_id "g62"; scaffold_5_5596707-5599522 AUGUSTUS stop_codon 2214 2216 . + 0 transcript_id "g62.t1"; gene_id "g62"; # protein sequence = [MSQARYSMGNKQVSALQYGSEMEPLVRVHTRTLTNGDAEFHTERIKQACDNYEKDSRPVEDIGPKEEGIELSAEIASL # QSDVLRTRRQLQQLMKDKKSLLENTDAAT] # end gene g62 ### # # ----- sequence number 63 (length = 3322, name = scaffold_5_5975679-5979000) ----- # # annotation: # Sequence scaffold_5_5975679-5979000 length=3322 scaffold_5_5975679-5979000 database start_codon 601 603 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 637 1014 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 1091 1724 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 1790 1871 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 1954 2038 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 2137 2219 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 2316 2417 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database intron 2529 2626 . + . transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 601 636 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 1015 1090 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 1725 1789 . + 2 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 1872 1953 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 2039 2136 . + 2 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 2220 2315 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 2418 2528 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database CDS 2627 2722 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; scaffold_5_5975679-5979000 database stop_codon 2720 2722 . + 0 transcript_id "g_2083-T1.1"; gene_id "g_2083-T1"; # Predicted genes for sequence number 63 on both strands # start gene g63 scaffold_5_5975679-5979000 AUGUSTUS gene 601 2722 0.39 + . g63 scaffold_5_5975679-5979000 AUGUSTUS transcript 601 2722 0.39 + . g63.t1 scaffold_5_5975679-5979000 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 637 1014 0.85 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 1091 1724 0.68 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 1790 1871 0.68 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 1954 2038 0.74 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 2137 2219 1 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 2316 2417 0.98 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS intron 2529 2626 1 + . transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 601 636 0.55 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 1015 1090 1 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 1725 1789 0.68 + 2 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 1872 1953 0.74 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 2039 2136 1 + 2 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 2220 2315 0.98 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 2418 2528 1 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS CDS 2627 2722 1 + 0 transcript_id "g63.t1"; gene_id "g63"; scaffold_5_5975679-5979000 AUGUSTUS stop_codon 2720 2722 . + 0 transcript_id "g63.t1"; gene_id "g63"; # protein sequence = [MAMKLAYWDIRGLAQPIRLLLEFTGTKYEDKFYQCGEAPNYDKSCWFDEKPKLGMDFPNLPYLEDGDRKIVQSNAILR # YIARKHNLCGETEDEKIRVDTVENQSMDFRNGFVMLCYTDFDKMKPGYLERLPGTLKQFSNFLGDRKWFAGDKITFVDFIMYELLDQHRMFEPKCLDD # FKKLTEFLDRFEALEKIAAYMKSNRFMKTPVNNKMAKWGNKKE] # end gene g63 ### # # ----- sequence number 64 (length = 2455, name = scaffold_5_9084885-9087339) ----- # # annotation: # Sequence scaffold_5_9084885-9087339 length=2455 scaffold_5_9084885-9087339 database start_codon 601 603 . + 0 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database intron 730 821 . + . transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database intron 1008 1080 . + . transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database intron 1133 1218 . + . transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database intron 1337 1512 . + . transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database intron 1609 1692 . + . transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 601 729 . + 0 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 822 1007 . + 0 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 1081 1132 . + 0 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 1219 1336 . + 2 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 1513 1608 . + 1 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database CDS 1693 1855 . + 1 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; scaffold_5_9084885-9087339 database stop_codon 1853 1855 . + 0 transcript_id "g_2105-T1.1"; gene_id "g_2105-T1"; # Predicted genes for sequence number 64 on both strands # start gene g64 scaffold_5_9084885-9087339 AUGUSTUS gene 156 1855 0.07 + . g64 scaffold_5_9084885-9087339 AUGUSTUS transcript 156 1855 0.07 + . g64.t1 scaffold_5_9084885-9087339 AUGUSTUS start_codon 156 158 . + 0 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 219 328 0.39 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 454 551 0.8 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 730 821 0.97 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 1008 1080 0.77 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 1133 1218 0.77 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 1337 1512 1 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS intron 1609 1695 0.56 + . transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 156 218 0.38 + 0 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 329 453 0.79 + 0 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 552 729 0.99 + 1 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 822 1007 0.84 + 0 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 1081 1132 0.77 + 0 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 1219 1336 0.91 + 2 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 1513 1608 1 + 1 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS CDS 1696 1855 0.56 + 1 transcript_id "g64.t1"; gene_id "g64"; scaffold_5_9084885-9087339 AUGUSTUS stop_codon 1853 1855 . + 0 transcript_id "g64.t1"; gene_id "g64"; # protein sequence = [MERLKKIVKLPHRLRPAQSSKINTEYRSEFARCLESLLLLGQRRSVSMTGGVSGLGLSNASGLLQSSLSVACHTPAIS # DMSLGSSAVRKPTAHRYISTKVLLSEGGDTPFTDHCLNYENSYKRLQTVIQQLKDQVQETHRDLTKHHSLIKKDTMADILDHSLQLDRQISAEYSSVE # LMRAVFEEIWEETYQRVVNEQEIYEAQLHDLMQIKQENSYLTTIAKQIGPYISSIAKVKERLEPRLKGPKELKDDRTEAMLKIYEDSTMATDTRHNRN # DSFNRNDLSFVTDDNCILSNPSEEALIKNKDFYCSGKQNTMETASWIEMPF] # end gene g64 ### # # ----- sequence number 65 (length = 1990, name = scaffold_5_10804121-10806110) ----- # # annotation: # Sequence scaffold_5_10804121-10806110 length=1990 scaffold_5_10804121-10806110 database start_codon 601 603 . + 0 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database intron 770 868 . + . transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database intron 925 1062 . + . transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database intron 1233 1353 . + . transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database CDS 601 769 . + 0 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database CDS 869 924 . + 2 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database CDS 1063 1232 . + 0 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database CDS 1354 1390 . + 1 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; scaffold_5_10804121-10806110 database stop_codon 1388 1390 . + 0 transcript_id "g_2121-T1.1"; gene_id "g_2121-T1"; # Predicted genes for sequence number 65 on both strands # start gene g65 scaffold_5_10804121-10806110 AUGUSTUS gene 1 1390 0.4 + . g65 scaffold_5_10804121-10806110 AUGUSTUS transcript 1 1390 0.4 + . g65.t1 scaffold_5_10804121-10806110 AUGUSTUS intron 1 181 0.77 + . transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS intron 224 696 0.64 + . transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS intron 770 868 1 + . transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS intron 925 1062 1 + . transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS intron 1233 1353 0.73 + . transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS CDS 182 223 0.64 + 0 transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS CDS 697 769 0.98 + 0 transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS CDS 869 924 1 + 2 transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS CDS 1063 1232 0.79 + 0 transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS CDS 1354 1390 0.73 + 1 transcript_id "g65.t1"; gene_id "g65"; scaffold_5_10804121-10806110 AUGUSTUS stop_codon 1388 1390 . + 0 transcript_id "g65.t1"; gene_id "g65"; # protein sequence = [AYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAPSNQGFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSG # AQIKIANPVEGSSDRQVTITGSPASISLAEYLINARLSSEATGLAAN] # end gene g65 ### # # ----- sequence number 66 (length = 5088, name = scaffold_5_12265577-12270664) ----- # # annotation: # Sequence scaffold_5_12265577-12270664 length=5088 scaffold_5_12265577-12270664 database start_codon 601 603 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 658 887 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 1074 1185 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 1267 1415 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 1529 1659 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 1748 1838 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 1901 2021 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 2127 2217 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 2369 2995 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 3232 3346 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 3501 3615 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 3764 3876 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 4068 4173 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database intron 4288 4368 . + . transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 601 657 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 888 1073 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 1186 1266 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 1416 1528 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 1660 1747 . + 1 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 1839 1900 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 2022 2126 . + 1 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 2218 2368 . + 1 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 2996 3231 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 3347 3500 . + 1 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 3616 3763 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 3877 4067 . + 2 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 4174 4287 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database CDS 4369 4488 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; scaffold_5_12265577-12270664 database stop_codon 4486 4488 . + 0 transcript_id "g_2132-T1.1"; gene_id "g_2132-T1"; # Predicted genes for sequence number 66 on both strands # start gene g66 scaffold_5_12265577-12270664 AUGUSTUS gene 601 4488 0.77 + . g66 scaffold_5_12265577-12270664 AUGUSTUS transcript 601 4488 0.77 + . g66.t1 scaffold_5_12265577-12270664 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 658 887 0.86 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 1074 1185 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 1267 1415 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 1529 1659 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 1748 1838 0.99 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 1901 2021 0.93 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 2127 2217 0.93 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 2369 2995 0.98 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 3232 3346 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 3501 3615 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 3764 3876 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 4068 4173 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS intron 4288 4368 1 + . transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 601 657 0.86 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 888 1073 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 1186 1266 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 1416 1528 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 1660 1747 1 + 1 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 1839 1900 0.99 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 2022 2126 0.93 + 1 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 2218 2368 1 + 1 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 2996 3231 0.99 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 3347 3500 1 + 1 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 3616 3763 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 3877 4067 1 + 2 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 4174 4287 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS CDS 4369 4488 1 + 0 transcript_id "g66.t1"; gene_id "g66"; scaffold_5_12265577-12270664 AUGUSTUS stop_codon 4486 4488 . + 0 transcript_id "g66.t1"; gene_id "g66"; # protein sequence = [MAAPCEKALEAIHVGKKKKSAKRYWQGTDEDGGEEDRKGQNEGKTEHVLPLKEKKTPARMEGAKKRREREEERGENKF # ISGKSDPFPGSAPVPEEKLKKFQRGQKGKPPARSHYKLKDIVHRSEAVSELAQKQAARHDLLLPEDAGFLEGDEDEDTCTISQEDIADAVDITSGAKY # FNLNLSQFGPYRLDYSKTGRHLLLGGRRGHVTCLDWQSKQLMCEINVMETVNDVKWLHSEAMFAVAQKKWLYIYDNNGIELHCIRKFNDVLRMQFLPY # HFLLATASATGFLQYLDVSVGKEVAAICTKSGRLDVMSQNPHNAIIHLGHSNGTVTLWSPNQKEPLVKMLCHQGGVRSVTVDKSGTYMVTSGMDKKLK # VYDLRAFKPLQSYFLPAGASCLSLSQRGLLSAATGDIVQVYRDVWSTPVTKPYMAHRVRGSVWGVNFCPFEDVLGVGHGDGFTSMVVPGAGEPNFDGL # DANPYRSAKQRQEWEVKALLEKVQPELICLDPGTLSQVDKTTWEQRHQDQIQALGYDPQTKEKFTPRHKTKGRSSSGKIEKRKKQVAHEDQRDDIRKT # VEDRMKIDKERKEKEKKNKSLSGQNSALDRFKK] # end gene g66 ### # # ----- sequence number 67 (length = 19460, name = scaffold_5_12377899-12397358) ----- # # annotation: # Sequence scaffold_5_12377899-12397358 length=19460 scaffold_5_12377899-12397358 database start_codon 601 603 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 753 1108 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 1194 1329 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 1594 3695 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 3846 5516 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 5632 6015 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 6124 7760 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 7874 8897 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 9003 10122 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 10254 10820 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 11020 11270 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 11418 11599 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 11757 12136 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 12241 13121 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 13186 14339 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 14375 15002 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 15108 15247 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 15412 15574 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 15723 17422 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 17564 17722 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database intron 17798 18743 . + . transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 601 752 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 1109 1193 . + 1 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 1330 1593 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 3696 3845 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 5517 5631 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 6016 6123 . + 2 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 7761 7873 . + 2 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 8898 9002 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 10123 10253 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 10821 11019 . + 1 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 11271 11417 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 11600 11756 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 12137 12240 . + 2 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 13122 13185 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 14340 14374 . + 2 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 15003 15107 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 15248 15411 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 15575 15722 . + 1 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 17423 17563 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 17723 17797 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database CDS 18744 18860 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; scaffold_5_12377899-12397358 database stop_codon 18858 18860 . + 0 transcript_id "g_2135-T1.1"; gene_id "g_2135-T1"; # Predicted genes for sequence number 67 on both strands # start gene g67 scaffold_5_12377899-12397358 AUGUSTUS gene 1 18860 0.01 + . g67 scaffold_5_12377899-12397358 AUGUSTUS transcript 1 18860 0.01 + . g67.t1 scaffold_5_12377899-12397358 AUGUSTUS intron 1 158 0.82 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 299 572 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 753 1108 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 1194 1329 0.99 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 1594 2038 0.84 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 2168 3212 0.33 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 3357 3695 0.6 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 3846 5516 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 5632 6015 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 6124 6471 0.89 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 6507 6727 0.41 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 6828 7760 0.96 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 7874 8897 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 9003 9818 0.27 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 9952 10135 0.35 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 10254 10461 0.83 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 10759 10820 0.88 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 11020 11270 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 11418 11599 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 11757 12136 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 12241 13121 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 13186 14339 0.92 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 14375 15002 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 15108 15247 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 15412 15574 1 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 15723 16540 0.79 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 16568 17422 0.54 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 17564 17722 0.99 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS intron 17798 18743 0.68 + . transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 159 298 0.82 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 573 752 1 + 1 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 1109 1193 0.99 + 1 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 1330 1593 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 2039 2167 0.48 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 3213 3356 0.52 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 3696 3845 0.88 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 5517 5631 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 6016 6123 1 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 6472 6506 0.89 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 6728 6827 0.41 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 7761 7873 1 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 8898 9002 0.96 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 9819 9951 0.18 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 10136 10253 0.67 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 10462 10758 0.83 + 1 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 10821 11019 0.96 + 1 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 11271 11417 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 11600 11756 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 12137 12240 1 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 13122 13185 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 14340 14374 0.92 + 2 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 15003 15107 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 15248 15411 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 15575 15722 1 + 1 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 16541 16567 0.55 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 17423 17563 1 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 17723 17797 0.99 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS CDS 18744 18860 0.63 + 0 transcript_id "g67.t1"; gene_id "g67"; scaffold_5_12377899-12397358 AUGUSTUS stop_codon 18858 18860 . + 0 transcript_id "g67.t1"; gene_id "g67"; # protein sequence = [VPKLQTMEPRKGPRAGGTRVIITGEHLDTGSQVHIRVNGTQQCAILTQTADTIECTMPAAVHTHTEAVTVCVEFEDIP # CQNPALSTMYTYEKNPSISFIKPNKSYLSGGRTITVTGKGFDLVQSVTLEVLEVGQAACKVRSPSMITCSTPASSQSQLATLKFFLNRVLYTGDSPAS # YDEGEEEEEPHGGHFLLEYVEDPQFFTATKEKLIKHHPGEPLTLIINDGVLKGIAASALAAWAVWMLFPVFFMKVDSTRAGPGWKSNGWRTPTHRPLP # DPYTQNPTHMSPEPSLVLDAHAKLPEECPYSTRLLQGSRQKGPSDLELAPDEYSVMIGSYPCDISFHNDQLFHCTINGSMSSSETDLPVTVQVGNFRR # IIAKVQLGGSELAITVSIVVCCVLLLLCTVALVVYCTKSRRAERYWQKTLLQMEEMESQIREEIRKVDGKSVLKDSCLGGKEKGRTQGHVSVEAEVEE # EGGWVLFIIRRDVGFAELQTDMTDLTKELNRSQGIPFLEYKQFVTRTFFPKMCSDYEKSLVQPVYENDALGPRALPETHPLLQDWQPGFLQAPPSGPS # LRQAGREVQVDRSGEGVMMSYGGRSTVITLSGGRPNMEEGITLFSTLLNNKHFLVTFVHALEQQKDFAVRDSSKCRLQKETGESPILAAPGSPSLAPQ # HDRVGTRAGRFQRLPLPSQPQHSDSLMLLDERGFVKEITSPTSTAILPGNPKNRQTTTLTQLSLPLAVRCVLVCSLASLLTIALHGKLEYYTSIMKDL # LVDLIDASASKNPKLMLRRTESVVEKMLTNWMSICMYSYLKETVGEPFFLLLCAIRQQINKGSIDAITGKARYTLNEEWLLRENIEAKPQNINVSFQG # CGMDSMCVRVMNTDTICQVKEKILEAFYKNLPFSQWPRAEDVDLELFASGCSSRILQDLDNSSVMEDGRKKLNTVFHYQIPEGASLAMSMKDKRDNTL # GRAKDLDTEKYVHLVLPNDEPMENRKSHRQSHRKKVLPEIYLTRLLSTKGTLQKFLDDLFQAILSIPPERPPLAIKYFFDFLEEQADKRGITDPDTLH # IWKTNSLPLRFWVNILKNPQFVFDIDKTDHMDACLSVIAQAFIDACSISDLQLGKSRDQVRAVRDSPTNKLLYAKEIPEYKKRVQCYYRQIQEMAPLS # EQEMNAHLAEESRKYRNDFNTNLALTEIYKYAKKYRHQVVNALESNPTARRTQLHHKFEQVIALVEDNIYECSSEA] # end gene g67 ### # # ----- sequence number 68 (length = 4213, name = scaffold_5_14175594-14179806) ----- # # annotation: # Sequence scaffold_5_14175594-14179806 length=4213 scaffold_5_14175594-14179806 database start_codon 601 603 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 604 921 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 1060 1183 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 1304 1524 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 1658 1877 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 1994 2160 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 2319 2446 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database intron 3482 3603 . + . transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 601 603 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 922 1059 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 1184 1303 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 1525 1657 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 1878 1993 . + 2 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 2161 2318 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 2447 3481 . + 1 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database CDS 3604 3613 . + 1 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; scaffold_5_14175594-14179806 database stop_codon 3611 3613 . + 0 transcript_id "g_2191-T1.1"; gene_id "g_2191-T1"; # Predicted genes for sequence number 68 on both strands # start gene g68 scaffold_5_14175594-14179806 AUGUSTUS gene 1 4177 0.97 + . g68 scaffold_5_14175594-14179806 AUGUSTUS transcript 1 4177 0.97 + . g68.t1 scaffold_5_14175594-14179806 AUGUSTUS intron 99 221 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 333 453 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 604 921 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 1060 1183 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 1304 1524 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 1658 1877 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 1994 2160 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 2319 2446 1 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS intron 3482 3762 0.97 + . transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 1 98 1 + 2 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 222 332 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 454 603 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 922 1059 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 1184 1303 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 1525 1657 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 1878 1993 1 + 2 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 2161 2318 1 + 0 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 2447 3481 1 + 1 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS CDS 3763 4177 0.97 + 1 transcript_id "g68.t1"; gene_id "g68"; scaffold_5_14175594-14179806 AUGUSTUS stop_codon 4175 4177 . + 0 transcript_id "g68.t1"; gene_id "g68"; # protein sequence = [ALWNQVMLPALDKARLARSLLHPGDLLHGFRTFGSRFKPYIRYCMEEEGCMEHMRSLLRDNELFRIYVTWAETHKQCN # RLKLADMLAKPHQRLTKYPLLLKSILKKTDEPAARDAVNSMVACVEGFINSVDSQMRQRQEQQKLATTSARIDSYEAVEGSSEEVEKILKEFNRFDLM # APMWGTSPDETRQLHQEGALRMKEGKDSRMDVYCFLFTDLLLITKPVKRVEKVKVIRQPLLIHNVVCKELKDPGSFILIYLNEFKSAVAAYTLQANSA # TQGRSWVDAICNVQNQLQRLRTEEVLRQQVNLQRRLDGDGEEEDEDESSNSTTSSPCLQHKEQPSTSHSDGSTETLSVMDIEESGEVPPAPNTDPGGS # ADRDPDPATSSTGADTQHPATDQNQVTGLACVGLEPQCRSMSMDSAYGTLSPESLLEQQSCQGQSEGEDAEEEVGGRQTEGGDTAADERVDMAAVEEE # DEDEKLSDAGEEEEEEEEDSTSLGSQLSVAQSLKLRRRPPVQTRLRLLQTPSSLAHKSRSEDNLLQHFHQSSSRTLTRSPCGPDRSECRQAEKTKSLA # HSKSLSELSQDCLELCQSEPDDFLTQSMPAGALRSIEGRVEECKASGGQANGSGSGSDGETEPSGSLEGKGGATPSGGAGAGMPKSRKSPAHQHKKLT # LAQLYRIRTTLVLNSTLTASVSQLDSDFSIHGCIGLSLSHGGERQLDINCLHFVLEVALKGLESERLGRTGDRLLRLNSTNHSLTGESGGGWGAPGGR # ACRPELQRGPERTRQHGLGAQELSLYLNTRQREKEKHTTENILPEMLFSSGISASPYVC] # end gene g68 ### # # ----- sequence number 69 (length = 6233, name = scaffold_5_15678430-15684662) ----- # # annotation: # Sequence scaffold_5_15678430-15684662 length=6233 scaffold_5_15678430-15684662 database start_codon 601 603 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 708 1717 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 1900 2504 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 2603 2856 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 2938 4665 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 4804 4943 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database intron 5017 5544 . + . transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 601 707 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 1718 1899 . + 1 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 2505 2602 . + 2 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 2857 2937 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 4666 4803 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 4944 5016 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database CDS 5545 5633 . + 2 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; scaffold_5_15678430-15684662 database stop_codon 5631 5633 . + 0 transcript_id "g_2163-T1.1"; gene_id "g_2163-T1"; # Predicted genes for sequence number 69 on both strands # start gene g69 scaffold_5_15678430-15684662 AUGUSTUS gene 1 978 0.45 + . g69 scaffold_5_15678430-15684662 AUGUSTUS transcript 1 978 0.45 + . g69.t1 scaffold_5_15678430-15684662 AUGUSTUS intron 1 70 1 + . transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS intron 236 558 0.55 + . transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS intron 708 788 0.84 + . transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS CDS 71 235 0.55 + 0 transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS CDS 559 707 1 + 0 transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS CDS 789 978 0.84 + 1 transcript_id "g69.t1"; gene_id "g69"; scaffold_5_15678430-15684662 AUGUSTUS stop_codon 976 978 . + 0 transcript_id "g69.t1"; gene_id "g69"; # protein sequence = [AKIPFDANKLYCSEILAILLQNNDSEYPAECCPTASTYRAGLMSLSGFQAPESCWVFKRHNPSTAEEQEMMENLFDAL # CSCLMLPANRDRFLRGEGLQLMNLMLSPSPSLSPSPSPVLSPSLSPGLSPSLSPSPSPILGPSPSLCPIVSPSLSPILSPSLSPSGVQA] # end gene g69 ### # start gene g70 scaffold_5_15678430-15684662 AUGUSTUS gene 1728 5633 0.15 + . g70 scaffold_5_15678430-15684662 AUGUSTUS transcript 1728 5633 0.15 + . g70.t1 scaffold_5_15678430-15684662 AUGUSTUS start_codon 1728 1730 . + 0 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 1900 2504 0.99 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 2603 2856 1 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 2938 4665 0.45 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 4804 4943 0.99 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 5017 5133 0.46 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS intron 5266 5511 0.74 + . transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 1728 1899 0.98 + 0 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 2505 2602 0.99 + 2 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 2857 2937 1 + 0 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 4666 4803 0.87 + 0 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 4944 5016 0.99 + 0 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 5134 5265 0.4 + 2 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS CDS 5512 5633 0.94 + 2 transcript_id "g70.t1"; gene_id "g70"; scaffold_5_15678430-15684662 AUGUSTUS stop_codon 5631 5633 . + 0 transcript_id "g70.t1"; gene_id "g70"; # protein sequence = [MSRTSALKVLDHAMMGPEGADNCHKFVDILGLRTIFPLFMKTPKKMRKAGVSDKEHEEHVCSVIASMLRNLKSQQRGR # MHSKFTENDCEKVDRLMELHFKYLEAVQQADKRIEGEKHDMVRRGEILDDVMEDEFYLRRLDAGLFVLQLLCYIMVEISNSGITQLQQRVHQILNLRG # GSVKVVRHIMRGLSSPAPVQGCPALPLSRAVQGCPALPLSRAAQPYSWRSTLLYPXKLTPTVHLSSEYAESIGDGKSEEFKETEQKRIMDLLEMF] # end gene g70 ### # # ----- sequence number 70 (length = 4180, name = scaffold_5_15764170-15768349) ----- # # annotation: # Sequence scaffold_5_15764170-15768349 length=4180 scaffold_5_15764170-15768349 database start_codon 601 603 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 618 844 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 924 1313 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 1468 1558 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 1657 1841 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 1903 2116 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 2215 2302 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 2373 2558 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 2612 2748 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 2841 3032 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 3085 3230 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database intron 3369 3481 . + . transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 601 617 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 845 923 . + 1 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 1314 1467 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 1559 1656 . + 2 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 1842 1902 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 2117 2214 . + 2 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 2303 2372 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 2559 2611 . + 2 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 2749 2840 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 3033 3084 . + 1 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 3231 3368 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database CDS 3482 3580 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; scaffold_5_15764170-15768349 database stop_codon 3578 3580 . + 0 transcript_id "g_2164-T1.1"; gene_id "g_2164-T1"; # Predicted genes for sequence number 70 on both strands # start gene g71 scaffold_5_15764170-15768349 AUGUSTUS gene 1 3580 0.26 + . g71 scaffold_5_15764170-15768349 AUGUSTUS transcript 1 3580 0.26 + . g71.t1 scaffold_5_15764170-15768349 AUGUSTUS intron 60 261 0.64 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 371 554 0.63 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 618 844 0.63 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 924 1313 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 1468 1558 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 1657 1841 0.99 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 1903 2116 0.82 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 2215 2302 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 2373 2558 0.79 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 2612 2748 0.98 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 2841 3032 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 3085 3230 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS intron 3369 3481 1 + . transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 1 59 0.64 + 1 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 262 370 0.82 + 2 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 555 617 0.63 + 1 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 845 923 1 + 1 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 1314 1467 1 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 1559 1656 0.99 + 2 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 1842 1902 0.99 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 2117 2214 0.82 + 2 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 2303 2372 0.79 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 2559 2611 0.98 + 2 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 2749 2840 0.98 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 3033 3084 1 + 1 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 3231 3368 1 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS CDS 3482 3580 1 + 0 transcript_id "g71.t1"; gene_id "g71"; scaffold_5_15764170-15768349 AUGUSTUS stop_codon 3578 3580 . + 0 transcript_id "g71.t1"; gene_id "g71"; # protein sequence = [KIFPDLLTPNQGILLLQDPTYPLPGKPPKFSPDEIELPNLRIVEWTTGYFECKGMRKERNTAREERATCPTMAQYDQL # EDKHSVDFHDNPPAPENVVKEEDNTVYFIYDEEVEVEEVPEPPPEPVTLVNDKPHKFKDHYCKKPKFCDVCARMIVLNNKFALRCKNCKTNIHHQCQS # YVEFQKCFGKIPPGFRRAYSSPLYSSDQPDAAHVNRSDPVFDTLRVGVVMANKERKKGSEDKKNMMMMMMEEEEAQEAPKEDEEGGEGKPEGDKKGDK # ADKADDKNKKQMGTFSQSHYYMALYRFKAIEKDDLDFHPGDRITVLDDSNEEWWRGKMGEKTGYLPTNYIIRVRAGERVFKVTRSFVGNREMGQITLK # KDQIVVKKGEEVNGYLKVSTGRKLGFFPSNLLQEI] # end gene g71 ### # # ----- sequence number 71 (length = 3806, name = scaffold_5_16291807-16295612) ----- # # annotation: # Sequence scaffold_5_16291807-16295612 length=3806 scaffold_5_16291807-16295612 database start_codon 601 603 . + 0 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 656 812 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 931 1037 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 1179 1387 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 1676 1868 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 1975 2122 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 2241 2401 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 2584 2691 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database intron 2883 3103 . + . transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 601 655 . + 0 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 813 930 . + 2 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 1038 1178 . + 1 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 1388 1675 . + 1 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 1869 1974 . + 1 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 2123 2240 . + 0 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 2402 2583 . + 2 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 2692 2882 . + 0 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database CDS 3104 3206 . + 1 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; scaffold_5_16291807-16295612 database stop_codon 3204 3206 . + 0 transcript_id "g_2172-T1.1"; gene_id "g_2172-T1"; # Predicted genes for sequence number 71 on both strands # start gene g72 scaffold_5_16291807-16295612 AUGUSTUS gene 1 3206 0.76 + . g72 scaffold_5_16291807-16295612 AUGUSTUS transcript 1 3206 0.76 + . g72.t1 scaffold_5_16291807-16295612 AUGUSTUS intron 1 409 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 656 812 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 931 1037 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 1179 1387 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 1676 1868 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 1975 2122 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 2241 2401 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 2584 2691 0.76 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS intron 2883 3103 1 + . transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 410 655 1 + 2 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 813 930 1 + 2 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 1038 1178 1 + 1 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 1388 1675 1 + 1 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 1869 1974 1 + 1 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 2123 2240 1 + 0 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 2402 2583 0.76 + 2 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 2692 2882 0.76 + 0 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS CDS 3104 3206 1 + 1 transcript_id "g72.t1"; gene_id "g72"; scaffold_5_16291807-16295612 AUGUSTUS stop_codon 3204 3206 . + 0 transcript_id "g72.t1"; gene_id "g72"; # protein sequence = [LQPAVEAFFLVHATERESKPPVRDTRESQLSHIKDEPPPLSPAPLTPATPSSLDPFFSREPSSMHISSNLPPDTQKFL # RFAETHRTVLNQILRQSTTHLADGPFAVLVDYIRILDFDVKRKYFRQELERLDEGLRKEDMAVHVRRDHVFEDSYRELHRKSPEDMKNRLYIVFEGEE # GQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHCNPNHLSYFKFVGRVVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYP # FFQGLVYLLENDVSTLGYELTFSTEVQEFGVCEVRDLKPNGANIIVTEENKKEYVHLVCQMKMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELL # ISGLPTIDIDDLKANTEYHKYQSSSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLP # AYESYEKLRHMLLLAIQECSEGFGLA] # end gene g72 ### # # ----- sequence number 72 (length = 5029, name = scaffold_5_17225905-17230933) ----- # # annotation: # Sequence scaffold_5_17225905-17230933 length=5029 scaffold_5_17225905-17230933 database start_codon 601 603 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 772 1032 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 1215 1693 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 1827 1942 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 2177 2397 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 2757 2998 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 3273 3519 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 3671 3868 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database intron 4067 4280 . + . transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 601 771 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 1033 1214 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 1694 1826 . + 1 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 1943 2176 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 2398 2756 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 2999 3272 . + 1 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 3520 3670 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 3869 4066 . + 2 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database CDS 4281 4429 . + 2 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; scaffold_5_17225905-17230933 database stop_codon 4427 4429 . + 0 transcript_id "g_2177-T1.1"; gene_id "g_2177-T1"; # Predicted genes for sequence number 72 on both strands # start gene g73 scaffold_5_17225905-17230933 AUGUSTUS gene 601 4429 0.92 + . g73 scaffold_5_17225905-17230933 AUGUSTUS transcript 601 4429 0.92 + . g73.t1 scaffold_5_17225905-17230933 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 772 1032 1 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 1215 1693 1 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 1827 1942 0.99 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 2177 2397 0.99 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 2757 2998 1 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 3273 3519 0.99 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 3671 3868 1 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS intron 4067 4280 1 + . transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 601 771 1 + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 1033 1214 1 + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 1694 1826 0.99 + 1 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 1943 2176 0.99 + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 2398 2756 0.94 + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 2999 3272 0.98 + 1 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 3520 3670 1 + 0 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 3869 4066 1 + 2 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS CDS 4281 4429 1 + 2 transcript_id "g73.t1"; gene_id "g73"; scaffold_5_17225905-17230933 AUGUSTUS stop_codon 4427 4429 . + 0 transcript_id "g73.t1"; gene_id "g73"; # protein sequence = [MDTLVPDTYQARHGLALLGQLERMRAVGELTDVVLLAEGIPFSCHRVVLSAFSPYFQAMFTCGLRETREGEVPLRDTT # AQSLELLLGYMYRAELPLTNHNIQGVAAAAFLLHIEGAFRLCQSHMEASMDPSNCVGLYHWARDLGASDLADSAWRYLCRHFSQVCEEEEVLDLDVHS # LGALLGSDDLNVSQEESVLELVLRWVERRRGDSQSEAQAGELLRRVRLELVEPGFLRRARRRNPVLLRDAECFGMIDAALQTSGLSVTTAPPRPALRY # GMETTNLLLCLGGIDEEGVPARRGGQADLSFCYAPQARRVYFLPSPLKATGGAGAITAGGVTQSNDIVVAIEKEDERKTKRVEIYRYDRSVENSWEKL # CCTGYRDMYALGLLGDALYLIGGQMKVRNHYVITDSVERWSLKRGGSWLSFAPLPLPLACHCAIGLKDRLYVLGGWTPQSEQLDEEPDRLNSRVFQLD # PGKDAWVECANMRFSRYRCGIATLNGEIYILGGIGCEGQDRGQSRRCLSSVEIYNPNTNTWRAGPTLPMPFLSLRSNASNVGVADGKLFLCGYYKGAG # RHEIITKEILVLDPSDQVWSVVDRRAAMHDSYDVCLVANLNPRDLLTV] # end gene g73 ### # # ----- sequence number 73 (length = 9116, name = scaffold_5_18481818-18490933) ----- # # annotation: # Sequence scaffold_5_18481818-18490933 length=9116 scaffold_5_18481818-18490933 database start_codon 601 603 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 635 714 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 858 2304 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 2420 2541 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 2612 2742 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 2888 4471 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 4704 5148 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 5241 6024 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 6067 6195 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 6425 7166 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database intron 7301 7997 . + . transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 601 634 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 715 857 . + 2 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 2305 2419 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 2542 2611 . + 2 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 2743 2887 . + 1 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 4472 4703 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 5149 5240 . + 2 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 6025 6066 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 6196 6424 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 7167 7300 . + 2 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database CDS 7998 8516 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; scaffold_5_18481818-18490933 database stop_codon 8514 8516 . + 0 transcript_id "g_2186-T1.1"; gene_id "g_2186-T1"; # Predicted genes for sequence number 73 on both strands # start gene g74 scaffold_5_18481818-18490933 AUGUSTUS gene 1 8516 0.07 + . g74 scaffold_5_18481818-18490933 AUGUSTUS transcript 1 8516 0.07 + . g74.t1 scaffold_5_18481818-18490933 AUGUSTUS intron 143 520 0.98 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 635 714 1 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 919 2019 0.45 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 2172 2304 0.93 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 2420 2541 1 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 2612 2742 1 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 2888 3607 0.48 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 3783 4189 0.92 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 4282 4471 0.93 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 4704 5148 0.99 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 5241 6024 0.89 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 6067 6195 0.89 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 6425 7166 0.99 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS intron 7301 7793 0.68 + . transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 1 142 0.64 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 521 634 1 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 715 918 0.46 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 2020 2171 0.58 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 2305 2419 1 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 2542 2611 1 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 2743 2887 0.99 + 1 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 3608 3782 0.45 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 4190 4281 0.93 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 4472 4703 0.99 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 5149 5240 1 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 6025 6066 0.89 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 6196 6424 1 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 7167 7300 1 + 2 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS CDS 7794 8516 0.65 + 0 transcript_id "g74.t1"; gene_id "g74"; scaffold_5_18481818-18490933 AUGUSTUS stop_codon 8514 8516 . + 0 transcript_id "g74.t1"; gene_id "g74"; # protein sequence = [CSVSDTGCLGDGPEVQTRTWSPNPGDSSWSKVSAAGRQAHWLAGPQPGGELYTGLTADFLGRDSVIFRSLGRSTMRTE # TDQKLLHDPKFVAAHLIPDNDDGDNDKVYFFFTEKAMEAGDPQGAIHTRIGRVCAVSLPFPLGAASVAHRHTQGNFLRYEQTNCSMASVVLEDGTRVN # SQPSVSPTLSVVMEIFSWLAPLPWLFSQNDAGGQRVLVNKWSTFVKARLVCSVPGPHGIDTHFDELEDVFLLRTKDDKNPDVYAIFSTISNVFQGYAV # CVYRMADIREAFNGPFAHKEGPDYQWGAYEGKVPYPRPGVLSSLTQASQGLGYEGAMDVQRSSSVNVPMLTQPMRESTVLIPGVRTGSRSSCCWPSPG # ASSDRSKGCARGLGATSLISQVWASLGMSPQCPSKITNQPGRQFGSTKDFPDAVLQFARGHPLMWRPVYPALRQPLLVKANIPYRLRQIVVDRVEAED # GQYDVMFIGTDIGTVLKVIALRNGNSLDTEEVTLEELQVFKVPTPITSMEISVKRQALYVGSPAGIAQVRLHRCDAYGKACAECCLARDPYCAWDGTS # CTRYLPNAKRQRVRRQDIRHGNPALQCQDQNLSVEDLDVTEERVVYGTENNSTFLECVPRSPQASVTWLVQRDDRMEESPFCHPHLLCTSPVPVLYLT # CTCPVLHLYLTYTSSIFSPIPAHLWLSCTSPVPPSLPPSFNSCFLRPQVKLDERVMRTEQGLLFRRLFRHDEGAYVCRSREHGFTQTLARLSLDVLQG # DTLGQLLARDDLSLDPLGAQGKSPNSGGFRAWPSCHAYRPGAASAFGQSRSWFKDLMQLIGPSNLPQVEEYCERMWCNDKLRRKHKAMVEKYRQAQDS # ARKARANKGSSERNRTPRDLTGRE] # end gene g74 ### # # ----- sequence number 74 (length = 2547, name = scaffold_6_3804076-3806622) ----- # # annotation: # Sequence scaffold_6_3804076-3806622 length=2547 scaffold_6_3804076-3806622 database start_codon 601 603 . + 0 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database intron 652 758 . + . transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database intron 892 1108 . + . transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database intron 1281 1412 . + . transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database intron 1511 1621 . + . transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database intron 1645 1875 . + . transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 601 651 . + 0 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 759 891 . + 0 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 1109 1280 . + 2 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 1413 1510 . + 1 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 1622 1644 . + 2 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database CDS 1876 1947 . + 0 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; scaffold_6_3804076-3806622 database stop_codon 1945 1947 . + 0 transcript_id "g_2225-T1.1"; gene_id "g_2225-T1"; # Predicted genes for sequence number 74 on both strands # start gene g75 scaffold_6_3804076-3806622 AUGUSTUS gene 601 2085 0.44 + . g75 scaffold_6_3804076-3806622 AUGUSTUS transcript 601 2085 0.44 + . g75.t1 scaffold_6_3804076-3806622 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS intron 652 758 1 + . transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS intron 892 1108 1 + . transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS intron 1281 1412 1 + . transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS intron 1511 2011 0.52 + . transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS CDS 601 651 0.79 + 0 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS CDS 759 891 1 + 0 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS CDS 1109 1280 1 + 2 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS CDS 1413 1510 0.98 + 1 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS CDS 2012 2085 0.62 + 2 transcript_id "g75.t1"; gene_id "g75"; scaffold_6_3804076-3806622 AUGUSTUS stop_codon 2083 2085 . + 0 transcript_id "g75.t1"; gene_id "g75"; # protein sequence = [MKMEDMSLSGLDNTKLEALAHDIYSELVEDTCLGLCFEVHRAVKQGYFFLDDTDQESMKDFEIVDQPGVDIFGQVYNQ # WKNKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIATNNNTSKSESDQEDNDDVNDNDWSYGSEKKALASKACVADQESAFVLLGNEAFP] # end gene g75 ### # # ----- sequence number 75 (length = 4711, name = scaffold_6_4662946-4667656) ----- # # annotation: # Sequence scaffold_6_4662946-4667656 length=4711 scaffold_6_4662946-4667656 database start_codon 601 603 . + 0 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 789 1357 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 1504 1654 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 1845 1933 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 2080 2186 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 2377 2517 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 2664 2814 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 3005 3301 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 3445 3566 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database intron 3731 3922 . + . transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 601 788 . + 0 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 1358 1503 . + 1 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 1655 1844 . + 2 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 1934 2079 . + 1 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 2187 2376 . + 2 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 2518 2663 . + 1 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 2815 3004 . + 2 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 3302 3444 . + 1 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 3567 3730 . + 2 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database CDS 3923 4111 . + 0 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; scaffold_6_4662946-4667656 database stop_codon 4109 4111 . + 0 transcript_id "g_2227-T1.1"; gene_id "g_2227-T1"; # Predicted genes for sequence number 75 on both strands # start gene g76 scaffold_6_4662946-4667656 AUGUSTUS gene 1 4111 0.46 + . g76 scaffold_6_4662946-4667656 AUGUSTUS transcript 1 4111 0.46 + . g76.t1 scaffold_6_4662946-4667656 AUGUSTUS intron 1 718 0.52 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 789 1357 0.96 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 1504 1654 0.98 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 1845 1933 1 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 2080 2186 1 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 2377 2517 1 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 2664 2814 0.89 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 3005 3301 1 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 3445 3566 1 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS intron 3731 3922 0.99 + . transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 719 788 0.52 + 2 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 1358 1503 1 + 1 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 1655 1844 0.98 + 2 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 1934 2079 1 + 1 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 2187 2376 1 + 2 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 2518 2663 0.89 + 1 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 2815 3004 1 + 2 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 3302 3444 1 + 1 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 3567 3730 1 + 2 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS CDS 3923 4111 0.98 + 0 transcript_id "g76.t1"; gene_id "g76"; scaffold_6_4662946-4667656 AUGUSTUS stop_codon 4109 4111 . + 0 transcript_id "g76.t1"; gene_id "g76"; # protein sequence = [QTGDFVRYHYNGTFLDGKKFDSSLERGSPFIGQVGLGRLITGMDRGVQGMCVNERRKVTVPPHLAYGSLGAGGVIPPD # TVLLFDVVLLDIWNTDDKVQIRTLSKPESCKRTVVASDFIRYHYNGTLLNGVPFDSSYSRNSTYDTYVGQGYLIKGMDEGLLGMCLGERRTIIIPPFL # AYEEKGYGTQIPSQATLVFEVLLVDLFNPKDDLIVEVKEVPKPCTRKTVVGDYIRYHYNGTFQDGSAFDSSYQRNSTYNTYIGMGYVIAGMDKALQGV # CVGEKRRVILPPHMAYGEKGTGDIIPGSAVLVFDIHVIDFHNPKDAVEIKVTYKPKECNITSEVDDLIKYRYNCSLMDGTLLYSSDHFDSPPVTTLGA # NKVIEGLDEGLRSMCVGERRQVVVPPHLGHGENGARGVPSSAVLYFELELLDLQKGVPDGYMFVWLGDSPDPLFPAMDLNKDGEVPLEEFSEFLMLQI # KEGKGRLRPAMDADQIIKDMFKNQDRNGDGKIVPDELKLKVEEDSEKAKHEEL] # end gene g76 ### # # ----- sequence number 76 (length = 5763, name = scaffold_6_5264226-5269988) ----- # # annotation: # Sequence scaffold_6_5264226-5269988 length=5763 scaffold_6_5264226-5269988 database start_codon 601 603 . + 0 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 852 2399 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 2507 2717 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 2749 2831 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 2959 3118 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 3204 3717 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 3856 3996 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 4077 4316 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database intron 4450 4537 . + . transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 601 851 . + 0 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 2400 2506 . + 1 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 2718 2748 . + 2 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 2832 2958 . + 1 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 3119 3203 . + 0 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 3718 3855 . + 2 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 3997 4076 . + 2 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 4317 4449 . + 0 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database CDS 4538 5163 . + 2 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; scaffold_6_5264226-5269988 database stop_codon 5161 5163 . + 0 transcript_id "g_2233-T1.1"; gene_id "g_2233-T1"; # Predicted genes for sequence number 76 on both strands # start gene g77 scaffold_6_5264226-5269988 AUGUSTUS gene 601 5163 0.7 + . g77 scaffold_6_5264226-5269988 AUGUSTUS transcript 601 5163 0.7 + . g77.t1 scaffold_6_5264226-5269988 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 852 2399 0.85 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 2507 2717 0.99 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 2749 2831 1 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 2959 3118 1 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 3204 3717 0.85 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 3856 3996 1 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 4077 4316 1 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS intron 4450 4537 1 + . transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 601 851 0.99 + 0 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 2400 2506 0.99 + 1 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 2718 2748 1 + 2 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 2832 2958 1 + 1 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 3119 3203 1 + 0 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 3718 3855 0.85 + 2 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 3997 4076 1 + 2 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 4317 4449 1 + 0 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS CDS 4538 5163 1 + 2 transcript_id "g77.t1"; gene_id "g77"; scaffold_6_5264226-5269988 AUGUSTUS stop_codon 5161 5163 . + 0 transcript_id "g77.t1"; gene_id "g77"; # protein sequence = [MAHTGGSGDGTHGECSVKQGSSTTGLRSRPYSSERDGQVRLVKASLQERLGPYEPMLTYLQSVLVWERPIQSVLLFAV # VNFVFWFFALSSLRVVFLLALGLALAVCVDVWRTKIWPEIRVKKLDESENESWGLVQPGVLSVPELCHHMAEAWVSGTAFASSAVLFKQCNPAKFCFL # TCGVFSCLAFVGRYVPGLVLSYSAVLAMLLAPLAAYHRVVQRVCVRLEPVLQRLDFSVSGYMMSKPIDNQFLRKPIRSTASGDASDSEEELAAFCPTF # DDAVAAKELALTDSEHSDAEVSYTDNGTFNLSRGQTPLTEGSEDLDRHSDPEESFARDLHDFPSINPDATLMEDDDDTSIGLPSLGLAGPRGALLDLD # AHLDSDQEDLDAELSLSGLPPASTFTDDLAGVIASNMIQAALAGALQPRPPATRRREGQGRAASQARAAGQARAESQPRAESQPRAAAQRGYRKQSSS # ELDTDWDVEDFEMLDQSELNQMDPLGGAGGRGGGQGGGQNNQGASFLSNLLGKPQ] # end gene g77 ### # # ----- sequence number 77 (length = 10525, name = scaffold_6_6905730-6916254) ----- # # annotation: # Sequence scaffold_6_6905730-6916254 length=10525 scaffold_6_6905730-6916254 database start_codon 601 603 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 2522 4181 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 4422 4587 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 4743 4910 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 4989 5084 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 5137 5351 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 5480 6486 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 6619 6730 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 6869 7132 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 7226 7333 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 7506 7623 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 7756 7836 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 8011 8131 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 8273 8467 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 8576 8805 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 9013 9119 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 9197 9309 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database intron 9450 9564 . + . transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 601 2521 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 4182 4421 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 4588 4742 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 4911 4988 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 5085 5136 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 5352 5479 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 6487 6618 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 6731 6868 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 7133 7225 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 7334 7505 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 7624 7755 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 7837 8010 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 8132 8272 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 8468 8575 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 8806 9012 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 9120 9196 . + 2 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 9310 9449 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database CDS 9565 9925 . + 1 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; scaffold_6_6905730-6916254 database stop_codon 9923 9925 . + 0 transcript_id "g_2241-T1.1"; gene_id "g_2241-T1"; # Predicted genes for sequence number 77 on both strands # start gene g78 scaffold_6_6905730-6916254 AUGUSTUS gene 13 9925 0.4 + . g78 scaffold_6_6905730-6916254 AUGUSTUS transcript 13 9925 0.4 + . g78.t1 scaffold_6_6905730-6916254 AUGUSTUS start_codon 13 15 . + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 2522 4181 0.43 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 4422 4587 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 4743 4910 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 4989 5084 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 5137 5351 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 5480 6145 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 6302 6486 0.96 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 6619 6730 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 6869 7132 0.98 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 7226 7333 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 7506 7623 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 7756 7836 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 8011 8131 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 8273 8467 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 8576 8805 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 9013 9119 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 9197 9309 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS intron 9450 9564 1 + . transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 13 2521 0.97 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 4182 4421 0.98 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 4588 4742 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 4911 4988 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 5085 5136 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 5352 5479 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 6146 6301 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 6487 6618 0.96 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 6731 6868 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 7133 7225 0.98 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 7334 7505 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 7624 7755 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 7837 8010 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 8132 8272 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 8468 8575 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 8806 9012 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 9120 9196 1 + 2 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 9310 9449 1 + 0 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS CDS 9565 9925 1 + 1 transcript_id "g78.t1"; gene_id "g78"; scaffold_6_6905730-6916254 AUGUSTUS stop_codon 9923 9925 . + 0 transcript_id "g78.t1"; gene_id "g78"; # protein sequence = [MDADSASSSGSEKNLAMMTSAAAATVNGDSNGNRQMVVGNGSSNGSHPSLAGTGSNNGDVTGPWGLPNGSTLSTGPNM # DASAGKTTADGSHSNKLNSAWGSQGPCAWPGMQNSGLNSPHSLVGNGGGGGVQRAPDTQGLNAKLSLQAPLGWGGMADSPEEPDVNGTNKVLGSSNSG # QPSNLNTEMNGPNNTTTTNAMTSSFPNSTGSVQMSEPGSGLSSWSGGGGGGPPALPNGAAVSQHSHGEGAFGTPWGGSTYPGDKGSNGDTVNPNPSLQ # QAASPQPPAAAAYKSNNNNINTGSGTRWDSSPTNPPTQSQAWGGASTPAPGNGMGPPAGLPRPWGSSASSSSSSSSSSSSNTKASNGEWSALAGNNQH # SSEIGGRKGGSNGWKSLEDDALAMGAGGVQSPQSGVGGWGRSGGSEGSGESSGGRSSDRDGQRGGPRRRTPPTGPVQPTIARVDVDPRVLSNTGWGQT # PVRQNTSWDVKPAPAPAPRMEERKPSNGGPGWGSTGQSVPSQPSNSGGWGDGPGGPGKDSPGSGWGEQKTAGWGDGKGPGTWEDGPSYNKSNNTWGNN # KEDRSNTWTNAPKPKQDWGASSGGEGWGGSGGPRGGGGGSNHWESQRSAGSGGWDSDSDRSGTGWGEQPRPNNNWGGGGGSNNPDQGNAPNSGSGWGE # PAKPVSQNNQGWAEPSMKQPNHTSQNWGDAPKPCPSNEWGKGPDCNPGPMSRGPSGPQTTNPASIKPTGWVGGPIPPSQKEEESTGWEEPSPESVRRR # MEIDDGTAAWGDPNKYSGGTVNMWNKNNQSEQEGMSMNTQPQPQPQPQPQPQPMQPPPPQNIMTGKDKNCSPSWAEPYGGPQKGESSWGEPAGPPVSV # DNGTSAWGKPMDTSSTWEDPSSSRDRDRDRDRDRDSSNTWGGSSGPGTHNQHKPGGVKPMERWHGEEVSMGGWEPEEEVEIGMWSPPNQDNREQNSWN # YMKKVPPKMNKSVSKQEDTWMNPFVKQFNNMNFSRDSPEDSMKNHKMEMSGGMMSDKRMDVNMSEYNSVIGKTPGPRHQIHKEASMERSPYYDKLSLS # PAAYDSSASDELSSNQSMSFSPTNPAQPIPCHGSVQAPAHSSSGAGRQNVNPMFSGSTAAQGRNGPQPPAQSLNSAQPNLRNQVPPPILPSQVPPSLL # KYPTSNGGLNPLFGPQQVAVLNQLSQLNQLSQLNQINQLQRLLLQQQQQQQQQQQKAPSQRPMPVVRQQDQGRQSMMQPPRHLDPSLLKQAPSSHQPL # KSYLDNYMPQNLPELQKDPGSMNSFSNFPLGLNSNMNVNMDMGSVGYKEPQSRLKKWTAMDMSVNSPLDQNSKPGAMSSGLRLEDSPFGPYDFLSSGH # PPLSPPGQSMGSVGDGWPPRAKSPHGNTNVTWPPEFRPGEPWKGYPNIDPETDPFVTPGSVINNLSINTVRDVDHLRDRNNGPSSSLNTTMPSNSAWS # SIRASSHSGSLTSTAQSTSARNNESKWSPGGSVSNSSLAHELWKVPLPHKGLSAPSRPPPGLTGQKPSSWDNAPLRMAGWGSDSRYTPGSSWGDSSSS # SSGRTNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNAVVCYSSKEEAAKAQKSLHMCVLGNTTILAEFASEDEINRFFAQGQSLAAASPGW # QAIGSSQSRMGGAMEGSHPFSSRAPEPSQWNSSDIHSSSLWGGPNYSTSLWGSPSGSEGGRISSPSPISSFLPVDHLTGGGDSM] # end gene g78 ### # # ----- sequence number 78 (length = 8750, name = scaffold_6_8446181-8454930) ----- # # annotation: # Sequence scaffold_6_8446181-8454930 length=8750 scaffold_6_8446181-8454930 database start_codon 601 603 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 623 2160 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 2251 2526 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 2716 2912 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 3066 3230 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 3354 3484 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 3608 3727 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 3766 3874 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 3989 4481 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 4636 4895 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 5016 5272 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 5461 5567 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 5733 5993 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 6189 6337 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 6556 6706 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 6774 6896 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 6989 7076 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 7246 7426 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database intron 7523 8096 . + . transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 601 622 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 2161 2250 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 2527 2715 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 2913 3065 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 3231 3353 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 3485 3607 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 3728 3765 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 3875 3988 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 4482 4635 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 4896 5015 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 5273 5460 . + 2 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 5568 5732 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 5994 6188 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 6338 6555 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 6707 6773 . + 1 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 6897 6988 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 7077 7245 . + 1 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 7427 7522 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database CDS 8097 8150 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; scaffold_6_8446181-8454930 database stop_codon 8148 8150 . + 0 transcript_id "g_2256-T1.1"; gene_id "g_2256-T1"; # Predicted genes for sequence number 78 on both strands # start gene g79 scaffold_6_8446181-8454930 AUGUSTUS gene 1 305 0.98 + . g79 scaffold_6_8446181-8454930 AUGUSTUS transcript 1 305 0.98 + . g79.t1 scaffold_6_8446181-8454930 AUGUSTUS intron 1 160 0.98 + . transcript_id "g79.t1"; gene_id "g79"; scaffold_6_8446181-8454930 AUGUSTUS CDS 161 305 0.98 + 1 transcript_id "g79.t1"; gene_id "g79"; scaffold_6_8446181-8454930 AUGUSTUS stop_codon 303 305 . + 0 transcript_id "g79.t1"; gene_id "g79"; # protein sequence = [GVTPTASQLKVCPDIPSMSESQEQPRSPDRHCQAKKETKKEDARRRN] # end gene g79 ### # start gene g80 scaffold_6_8446181-8454930 AUGUSTUS gene 1920 8150 0.19 + . g80 scaffold_6_8446181-8454930 AUGUSTUS transcript 1920 8150 0.19 + . g80.t1 scaffold_6_8446181-8454930 AUGUSTUS start_codon 1920 1922 . + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 1951 2160 0.77 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 2251 2526 0.73 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 2716 2912 0.9 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 3066 3230 0.57 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 3354 3484 0.48 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 3608 3727 0.76 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 3766 3874 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 3989 4481 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 4636 4895 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 5016 5272 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 5461 5567 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 5733 5993 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 6189 6337 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 6556 6706 0.92 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 6774 6896 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 6989 7076 1 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 7246 7426 0.96 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS intron 7523 8096 0.92 + . transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 1920 1950 0.85 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 2161 2250 0.67 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 2527 2715 0.99 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 2913 3065 0.69 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 3231 3353 0.68 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 3485 3607 0.72 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 3728 3765 1 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 3875 3988 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 4482 4635 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 4896 5015 1 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 5273 5460 1 + 2 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 5568 5732 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 5994 6188 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 6338 6555 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 6707 6773 0.92 + 1 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 6897 6988 1 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 7077 7245 1 + 1 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 7427 7522 0.96 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS CDS 8097 8150 0.96 + 0 transcript_id "g80.t1"; gene_id "g80"; scaffold_6_8446181-8454930 AUGUSTUS stop_codon 8148 8150 . + 0 transcript_id "g80.t1"; gene_id "g80"; # protein sequence = [MEFMGYMGKSSLLVSLEMVQGCAPGYQLRRGVKPGSKDCVDVDECLTEGMIEYEDDNDDTEINPICGENSKCFNTIGS # FYCQCDQGFTPQGKNFSASESVTCRDVNECVENKDICGPNSVCINTAGKYQCTCAVGFAPSDGNETFMSGKGVTCIDINECEEVDICGQHGKCDNTPG # SYSCICKPGFTRENDDSCKEMCKIHSSLCGNGTCTTEADGHNCACYVGFTNYGNKQSRCKELNCESFNSVNLERLPGIENTVALLRNSCLELSETGKL # MGARQVDGKALLEALLSMIDGLLQGGTLNDNRKMTVLLEFAENALKLIGPMMNSPRTSLAYKHVEVELLRRGADFPQGPVSLSSEHTRLNSSWETAAG # DASSYPGFTTITLLTYKGLKTSKHTFFKGGKNENGGQMQLKSKVVTASVSNTNTTLLPKPVVFTFYHLESDDGPRHCAYWEPQLDGGSWSDRGCVVLE # SMKDYTVCSCSHLSSFAVLMALHEVEDVFQLQVITWVGLSLSLVCLFLCILTFTLFRSIHSTRNTIHLHLCISLFVADFVFLTGITRAGNPVGCGIVA # GLLHYFFLAAFCWMCLEGIQLFRMVVLVFNTTIKPLYMMAGGYGVPAVIVLLSAIVNAKGYGTERYCWLSLEDHFIWSFFGPVCVIIMVNVFFFLITV # WKLAQKFSSLNPDLDKMHKIKAFTITAVAQLCVLGTMWVFGCFQFDQGSLAMSYLFTILNSLQGVLIFVMHCLLSKPVREEYSKFLSRVFAPEKKKYS # EFSSNQTSKSQTSKSTQNTGETHICPKN] # end gene g80 ### # # ----- sequence number 79 (length = 3054, name = scaffold_6_8579947-8583000) ----- # # annotation: # Sequence scaffold_6_8579947-8583000 length=3054 scaffold_6_8579947-8583000 database start_codon 601 603 . + 0 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 786 895 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 1017 1139 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 1170 1620 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 1668 1750 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 1834 1918 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database intron 2304 2408 . + . transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 601 785 . + 0 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 896 1016 . + 1 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 1140 1169 . + 0 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 1621 1667 . + 0 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 1751 1833 . + 1 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 1919 2303 . + 2 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database CDS 2409 2454 . + 1 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; scaffold_6_8579947-8583000 database stop_codon 2452 2454 . + 0 transcript_id "g_2259-T1.1"; gene_id "g_2259-T1"; # Predicted genes for sequence number 79 on both strands # start gene g81 scaffold_6_8579947-8583000 AUGUSTUS gene 1903 3054 0.45 + . g81 scaffold_6_8579947-8583000 AUGUSTUS transcript 1903 3054 0.45 + . g81.t1 scaffold_6_8579947-8583000 AUGUSTUS start_codon 1903 1905 . + 0 transcript_id "g81.t1"; gene_id "g81"; scaffold_6_8579947-8583000 AUGUSTUS intron 2123 3054 0.47 + . transcript_id "g81.t1"; gene_id "g81"; scaffold_6_8579947-8583000 AUGUSTUS CDS 1903 2122 0.9 + 0 transcript_id "g81.t1"; gene_id "g81"; # protein sequence = [MCFSAGASEDVLQAITGQLLDTWPDQSAEAQERGVALGHLTRVGLTRVDARDVVEKLCLESLGSVSEFSPPIE] # end gene g81 ### # # ----- sequence number 80 (length = 5109, name = scaffold_6_8868139-8873247) ----- # # annotation: # Sequence scaffold_6_8868139-8873247 length=5109 scaffold_6_8868139-8873247 database start_codon 601 603 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 613 922 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 1094 1253 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 1356 1748 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 1800 1952 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 2124 2331 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 2409 2643 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 2752 2953 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 3078 3231 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 3311 3523 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 3654 3753 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database intron 3915 4033 . + . transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 601 612 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 923 1093 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 1254 1355 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 1749 1799 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 1953 2123 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 2332 2408 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 2644 2751 . + 1 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 2954 3077 . + 1 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 3232 3310 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 3524 3653 . + 2 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 3754 3914 . + 1 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database CDS 4034 4509 . + 2 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; scaffold_6_8868139-8873247 database stop_codon 4507 4509 . + 0 transcript_id "g_2329-T1.1"; gene_id "g_2329-T1"; # Predicted genes for sequence number 80 on both strands # start gene g82 scaffold_6_8868139-8873247 AUGUSTUS gene 601 4509 0.54 + . g82 scaffold_6_8868139-8873247 AUGUSTUS transcript 601 4509 0.54 + . g82.t1 scaffold_6_8868139-8873247 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 613 922 0.66 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 1094 1253 0.63 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 1356 1748 0.83 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 1800 1952 0.99 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 2124 2331 0.99 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 2409 2643 0.98 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 2752 2953 1 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 3078 3231 1 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 3311 3523 1 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 3654 3753 1 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS intron 3915 4033 1 + . transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 601 612 0.67 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 923 1093 0.73 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 1254 1355 0.83 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 1749 1799 1 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 1953 2123 0.98 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 2332 2408 0.99 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 2644 2751 0.99 + 1 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 2954 3077 1 + 1 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 3232 3310 1 + 0 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 3524 3653 1 + 2 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 3754 3914 1 + 1 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS CDS 4034 4509 1 + 2 transcript_id "g82.t1"; gene_id "g82"; scaffold_6_8868139-8873247 AUGUSTUS stop_codon 4507 4509 . + 0 transcript_id "g82.t1"; gene_id "g82"; # protein sequence = [MGKKTKHQKKSRLQANHVAEETYASAPHSFVFQRGKVGKNVGQLVMDMRRVMEPFTAESLKVRKKNVLKDFVSIAGPL # GVTHFVIFSKTPSSINMRLARLPKGPMLHFRVKKFSLIKDVVSSLKKHRMHEQQFTHHPLLVLNNFSTDGMQVKLMATMFQNMFPSINVHKVSLNGIK # RCVLLHYDPESQEIEFRHYSLKVVPVGMSKGVKKLMQERFPNMSKLEDISELLIKGANLSESEAEQDGDHNITELPQVYSGRGNMAAEQSAVRLTEIG # PRMTLQLMKIQEGMGEGSVLYHAVISKTEEEIQEILKRKEAQLKEKSLRRKKQEQNVAEKNEKREENKKKSLEGIKRKHQETDGHDSEVEDPGMEEGQ # TAAYESDDEVEYYRQAVGQEPDEDMFPAAKKRRENSKSPGPFKKRTRSPGAENKPRLHSKSAKRPGPGGPQRDRRGREGEKTGGRKFGEKQGGKKFGD # KGKHFGGKVGPGGKRFGGKKREDGDKKFAGKKRFDGGKTFGGKRTGDKTSKSNGQKSKSRPGFKNKGSGGGAKQSFKQRKGKR] # end gene g82 ### # # ----- sequence number 81 (length = 1988, name = scaffold_6_9088608-9090595) ----- # # annotation: # Sequence scaffold_6_9088608-9090595 length=1988 scaffold_6_9088608-9090595 database start_codon 601 603 . + 0 transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database intron 831 958 . + . transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database intron 1167 1259 . + . transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database CDS 601 830 . + 0 transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database CDS 959 1166 . + 1 transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database CDS 1260 1388 . + 0 transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; scaffold_6_9088608-9090595 database stop_codon 1386 1388 . + 0 transcript_id "g_2269-T1.1"; gene_id "g_2269-T1"; # Predicted genes for sequence number 81 on both strands # start gene g83 scaffold_6_9088608-9090595 AUGUSTUS gene 736 1388 1 + . g83 scaffold_6_9088608-9090595 AUGUSTUS transcript 736 1388 1 + . g83.t1 scaffold_6_9088608-9090595 AUGUSTUS start_codon 736 738 . + 0 transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS intron 831 958 1 + . transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS intron 1167 1259 1 + . transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS CDS 736 830 1 + 0 transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS CDS 959 1166 1 + 1 transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS CDS 1260 1388 1 + 0 transcript_id "g83.t1"; gene_id "g83"; scaffold_6_9088608-9090595 AUGUSTUS stop_codon 1386 1388 . + 0 transcript_id "g83.t1"; gene_id "g83"; # protein sequence = [MSLSSKDKATVKAFWAKVAPKTEEVGSDALSRMLVVYPQTKTYFSHWPDLSPGSAPVRSHGKTIIEGVGEAVAKIDDL # ANGLVNLSELHAFQLRVDPANFKIFSHNIIVVLAILFPDDFTPEAHVSVDKFLSALSLALAEKYR] # end gene g83 ### # # ----- sequence number 82 (length = 2415, name = scaffold_6_9169365-9171779) ----- # # annotation: # Sequence scaffold_6_9169365-9171779 length=2415 scaffold_6_9169365-9171779 database start_codon 601 603 . + 0 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database intron 823 971 . + . transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database intron 1063 1365 . + . transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database intron 1472 1563 . + . transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database intron 1639 1757 . + . transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database CDS 601 822 . + 0 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database CDS 972 1062 . + 0 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database CDS 1366 1471 . + 2 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database CDS 1564 1638 . + 1 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database CDS 1758 1815 . + 1 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; scaffold_6_9169365-9171779 database stop_codon 1813 1815 . + 0 transcript_id "g_2273-T1.1"; gene_id "g_2273-T1"; # Predicted genes for sequence number 82 on both strands # (none) # # ----- sequence number 83 (length = 9339, name = scaffold_6_9826741-9836079) ----- # # annotation: # Sequence scaffold_6_9826741-9836079 length=9339 scaffold_6_9826741-9836079 database start_codon 601 603 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 794 2237 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 2283 3506 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 3750 4069 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 4104 4250 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 4329 4646 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 4828 5222 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 5378 5545 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 5687 6016 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 6111 6372 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 6454 7071 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 7246 8006 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 8097 8330 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database intron 8500 8686 . + . transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 601 793 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 2238 2282 . + 2 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 3507 3749 . + 2 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 4070 4103 . + 2 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 4251 4328 . + 1 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 4647 4827 . + 1 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 5223 5377 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 5546 5686 . + 1 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 6017 6110 . + 1 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 6373 6453 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 7072 7245 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 8007 8096 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 8331 8499 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database CDS 8687 8739 . + 2 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; scaffold_6_9826741-9836079 database stop_codon 8737 8739 . + 0 transcript_id "g_2276-T1.1"; gene_id "g_2276-T1"; # Predicted genes for sequence number 83 on both strands # start gene g84 scaffold_6_9826741-9836079 AUGUSTUS gene 601 8739 0.55 + . g84 scaffold_6_9826741-9836079 AUGUSTUS transcript 601 8739 0.55 + . g84.t1 scaffold_6_9826741-9836079 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 794 2237 0.87 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 2283 3506 0.94 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 3750 4069 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 4104 4250 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 4329 4646 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 4828 5222 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 5378 5545 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 5687 6016 0.99 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 6111 6372 0.68 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 6454 7071 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 7246 8006 0.88 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 8097 8330 0.89 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS intron 8500 8686 1 + . transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 601 793 0.99 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 2238 2282 0.87 + 2 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 3507 3749 1 + 2 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 4070 4103 1 + 2 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 4251 4328 1 + 1 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 4647 4827 1 + 1 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 5223 5377 1 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 5546 5686 0.99 + 1 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 6017 6110 0.68 + 1 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 6373 6453 1 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 7072 7245 0.99 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 8007 8096 0.89 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 8331 8499 1 + 0 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS CDS 8687 8739 1 + 2 transcript_id "g84.t1"; gene_id "g84"; scaffold_6_9826741-9836079 AUGUSTUS stop_codon 8737 8739 . + 0 transcript_id "g84.t1"; gene_id "g84"; # protein sequence = [MDPRDTAPDSWEQEDDVEATIDGELGSALKALNVKAKPFVPNVNAAEFVPAFFMKGPSENPDSGVDVETVATMEVSET # AAPVENGDSEMTTEETWDQKGTEPNEAEPGGGPGGDEGPGAEDIQQEIMMEEDEEVPTPKMAPAQPDAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTG # MVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKG # GQTREHAMLAKTAGVKHLIVLVNKMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEPVELCTWYTGLPFIPHLDSLPNFK # RSSGGPVRLPIVDKYKDMGTVILGKLESGSISKAQQLVMMPNRHTVEVLSLLSDDVETDDAAPGENLKLRLKGIEEEEILPGFILCNADNLCHSGRTF # DAQIVIIEHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKTGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKV # LKLVAERD] # end gene g84 ### # # ----- sequence number 84 (length = 2908, name = scaffold_6_12115460-12118367) ----- # # annotation: # Sequence scaffold_6_12115460-12118367 length=2908 scaffold_6_12115460-12118367 database start_codon 601 603 . + 0 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database intron 908 1140 . + . transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database intron 1212 1610 . + . transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database intron 1641 2089 . + . transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database CDS 601 907 . + 0 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database CDS 1141 1211 . + 2 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database CDS 1611 1640 . + 0 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database CDS 2090 2308 . + 0 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; scaffold_6_12115460-12118367 database stop_codon 2306 2308 . + 0 transcript_id "g_2291-T1.1"; gene_id "g_2291-T1"; # Predicted genes for sequence number 84 on both strands # start gene g85 scaffold_6_12115460-12118367 AUGUSTUS gene 838 2308 0.36 + . g85 scaffold_6_12115460-12118367 AUGUSTUS transcript 838 2308 0.36 + . g85.t1 scaffold_6_12115460-12118367 AUGUSTUS start_codon 838 840 . + 0 transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS intron 908 1140 0.99 + . transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS intron 1212 2089 0.73 + . transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS CDS 838 907 0.42 + 0 transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS CDS 1141 1211 0.99 + 2 transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS CDS 2090 2308 0.81 + 0 transcript_id "g85.t1"; gene_id "g85"; scaffold_6_12115460-12118367 AUGUSTUS stop_codon 2306 2308 . + 0 transcript_id "g85.t1"; gene_id "g85"; # protein sequence = [MVLRKLLLDQSFASPLATSVFYTGVSLLERKDDVFEDWREKFFNTWKLLNFVLLPLYLRTAFMGCCAFLWATFLCFSR # QSGDGTATMALAFILDPRKTLEALREARLTSRKQKSEQSKN] # end gene g85 ### # # ----- sequence number 85 (length = 4777, name = scaffold_6_13944281-13949057) ----- # # annotation: # Sequence scaffold_6_13944281-13949057 length=4777 scaffold_6_13944281-13949057 database start_codon 601 603 . + 0 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database intron 728 1615 . + . transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database intron 2075 2670 . + . transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database intron 2889 3333 . + . transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database intron 3546 4149 . + . transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database CDS 601 727 . + 0 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database CDS 1616 2074 . + 2 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database CDS 2671 2888 . + 2 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database CDS 3334 3545 . + 0 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database CDS 4150 4177 . + 1 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; scaffold_6_13944281-13949057 database stop_codon 4175 4177 . + 0 transcript_id "g_2302-T1.1"; gene_id "g_2302-T1"; # Predicted genes for sequence number 85 on both strands # start gene g86 scaffold_6_13944281-13949057 AUGUSTUS gene 601 3549 0.35 + . g86 scaffold_6_13944281-13949057 AUGUSTUS transcript 601 3549 0.35 + . g86.t1 scaffold_6_13944281-13949057 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS intron 728 1615 0.75 + . transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS intron 2075 2670 1 + . transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS intron 2889 3333 0.99 + . transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS CDS 601 727 0.6 + 0 transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS CDS 1616 2074 1 + 2 transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS CDS 2671 2888 1 + 2 transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS CDS 3334 3549 0.62 + 0 transcript_id "g86.t1"; gene_id "g86"; scaffold_6_13944281-13949057 AUGUSTUS stop_codon 3547 3549 . + 0 transcript_id "g86.t1"; gene_id "g86"; # protein sequence = [MAGKATIDGALELKSSSQKSFPFVLKKIMDIPPPNILDEGDDEIEKEKLCSSENVETGSGGGASGAGGTGGSGGGVSA # SLTPAIWEKTIPYDGEKFHLEYMDLDEFLLENGISSTLEEELQSLNQEDAKESKAPSTSASATISSAAEIVTITLKTAKMEEDDEEEEEGGEDEDEDE # DDDQDSVADAADVESDGRRDGKAVDRNTPSPIDPEAIEVDVNFQPDPTDLVLSSVPGGELFNPRKHKFSDEELKPQPMIKKAKKVFVPNEQKDDKYWS # RRKKNNMAAKRSRDARRLKENQITVRASFLERENAALRQQVAELRKDCGRCKNTMARYEVKYGPL] # end gene g86 ### # # ----- sequence number 86 (length = 2099, name = scaffold_6_14397345-14399443) ----- # # annotation: # Sequence scaffold_6_14397345-14399443 length=2099 scaffold_6_14397345-14399443 database start_codon 601 603 . + 0 transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database intron 701 830 . + . transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database intron 995 1196 . + . transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database CDS 601 700 . + 0 transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database CDS 831 994 . + 2 transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database CDS 1197 1499 . + 0 transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; scaffold_6_14397345-14399443 database stop_codon 1497 1499 . + 0 transcript_id "g_2307-T1.1"; gene_id "g_2307-T1"; # Predicted genes for sequence number 86 on both strands # start gene g87 scaffold_6_14397345-14399443 AUGUSTUS gene 601 1499 0.98 + . g87 scaffold_6_14397345-14399443 AUGUSTUS transcript 601 1499 0.98 + . g87.t1 scaffold_6_14397345-14399443 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS intron 701 830 1 + . transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS intron 995 1196 1 + . transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS CDS 601 700 0.98 + 0 transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS CDS 831 994 1 + 2 transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS CDS 1197 1499 1 + 0 transcript_id "g87.t1"; gene_id "g87"; scaffold_6_14397345-14399443 AUGUSTUS stop_codon 1497 1499 . + 0 transcript_id "g87.t1"; gene_id "g87"; # protein sequence = [MVTEGEPSDWVKVLHLLVLSFTWGMQVWVSFIAGFALVQQVTLHTFGLVQSKLFPVYFYCLLACNFSSLAVYAVYHPR # ELLDWHESLQMGLYFTALVMAGLNAQWFGPAATEVMLQLREVEKEHGLGEQVGLGSQREAYAKLKEQDPKYKAWKKTFGQYHGLSNLCNLIGFLSTTT # NLVYLALHLSTI] # end gene g87 ### # # ----- sequence number 87 (length = 3105, name = scaffold_6_17829775-17832879) ----- # # annotation: # Sequence scaffold_6_17829775-17832879 length=3105 scaffold_6_17829775-17832879 database start_codon 601 603 . + 0 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database intron 682 1172 . + . transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database intron 1343 2234 . + . transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database intron 2346 2456 . + . transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database CDS 601 681 . + 0 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database CDS 1173 1342 . + 0 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database CDS 2235 2345 . + 1 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database CDS 2457 2505 . + 1 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; scaffold_6_17829775-17832879 database stop_codon 2503 2505 . + 0 transcript_id "g_2321-T1.1"; gene_id "g_2321-T1"; # Predicted genes for sequence number 87 on both strands # start gene g88 scaffold_6_17829775-17832879 AUGUSTUS gene 601 2505 0.4 + . g88 scaffold_6_17829775-17832879 AUGUSTUS transcript 601 2505 0.4 + . g88.t1 scaffold_6_17829775-17832879 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS intron 682 1172 1 + . transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS intron 1343 2234 0.76 + . transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS intron 2346 2456 1 + . transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS CDS 601 681 0.51 + 0 transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS CDS 1173 1342 0.99 + 0 transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS CDS 2235 2345 1 + 1 transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS CDS 2457 2505 1 + 1 transcript_id "g88.t1"; gene_id "g88"; scaffold_6_17829775-17832879 AUGUSTUS stop_codon 2503 2505 . + 0 transcript_id "g88.t1"; gene_id "g88"; # protein sequence = [MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTSDRPYSHALVSGIDRYPRKVTTTMSKKKVAKRSKIKAFVKVYNYN # HLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKIKFEERYKTGKNKWFFQKLRF] # end gene g88 ### # # ----- sequence number 88 (length = 2763, name = scaffold_7_7025596-7028358) ----- # # annotation: # Sequence scaffold_7_7025596-7028358 length=2763 scaffold_7_7025596-7028358 database start_codon 601 603 . + 0 transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database intron 632 1255 . + . transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database intron 1462 2073 . + . transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database CDS 601 631 . + 0 transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database CDS 1256 1461 . + 2 transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database CDS 2074 2163 . + 0 transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; scaffold_7_7025596-7028358 database stop_codon 2161 2163 . + 0 transcript_id "g_2356-T1.1"; gene_id "g_2356-T1"; # Predicted genes for sequence number 88 on both strands # start gene g89 scaffold_7_7025596-7028358 AUGUSTUS gene 601 2163 0.74 + . g89 scaffold_7_7025596-7028358 AUGUSTUS transcript 601 2163 0.74 + . g89.t1 scaffold_7_7025596-7028358 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS intron 632 1255 0.74 + . transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS intron 1462 2073 1 + . transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS CDS 601 631 0.78 + 0 transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS CDS 1256 1461 0.93 + 2 transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS CDS 2074 2163 1 + 0 transcript_id "g89.t1"; gene_id "g89"; scaffold_7_7025596-7028358 AUGUSTUS stop_codon 2161 2163 . + 0 transcript_id "g89.t1"; gene_id "g89"; # protein sequence = [MSSNNVSLSKAELATAISLTAGVTAISILLFQKLFSKRKGVKPKVNQELQKDNPKVVHAFDIEDLGDKAVYCRCWRSK # KFPYCDGAHAKHNQETGDNVGPLIIKRKEA] # end gene g89 ### # # ----- sequence number 89 (length = 2604, name = scaffold_7_7186339-7188942) ----- # # annotation: # Sequence scaffold_7_7186339-7188942 length=2604 scaffold_7_7186339-7188942 database start_codon 601 603 . + 0 transcript_id "g_2358-T1.1"; gene_id "g_2358-T1"; scaffold_7_7186339-7188942 database intron 694 912 . + . transcript_id "g_2358-T1.1"; gene_id "g_2358-T1"; scaffold_7_7186339-7188942 database CDS 601 693 . + 0 transcript_id "g_2358-T1.1"; gene_id "g_2358-T1"; scaffold_7_7186339-7188942 database CDS 913 2004 . + 0 transcript_id "g_2358-T1.1"; gene_id "g_2358-T1"; scaffold_7_7186339-7188942 database stop_codon 2002 2004 . + 0 transcript_id "g_2358-T1.1"; gene_id "g_2358-T1"; # Predicted genes for sequence number 89 on both strands # start gene g90 scaffold_7_7186339-7188942 AUGUSTUS gene 1 2004 0.82 + . g90 scaffold_7_7186339-7188942 AUGUSTUS transcript 1 2004 0.82 + . g90.t1 scaffold_7_7186339-7188942 AUGUSTUS intron 1 566 0.85 + . transcript_id "g90.t1"; gene_id "g90"; scaffold_7_7186339-7188942 AUGUSTUS intron 694 912 0.97 + . transcript_id "g90.t1"; gene_id "g90"; scaffold_7_7186339-7188942 AUGUSTUS CDS 567 693 0.82 + 1 transcript_id "g90.t1"; gene_id "g90"; scaffold_7_7186339-7188942 AUGUSTUS CDS 913 2004 1 + 0 transcript_id "g90.t1"; gene_id "g90"; scaffold_7_7186339-7188942 AUGUSTUS stop_codon 2002 2004 . + 0 transcript_id "g90.t1"; gene_id "g90"; # protein sequence = [VDQILGKGQISMDKKIKDKLQSDGDQLEDMSMLGRVCKVERQVTSIESKLDSLLDVYRQALQKGSSALTLSSLPLFEL # DHHRTSAYQSSMFNCSPNPQGGVCDGVGGGGGLTRSLKSNHPRGLRLILAPSNELPPDSEPPSYPPSTASLTPSPLLPPDSPYPALTTPNSFPAPPRQ # AHIPDLPSAGVGLTTTLQLPPVIAPRVRRPEGLVLDAPPTGDMGENPGTPVEDEDGEAACAQIGVRLRGKPSLREEGSWRRHLSLEVDPLLLLSSCPD # ERTSDSGAGLGKSLSAHNLTQTFADRSSCMSSLLNKSNSSSRDGSQGNSVGGCKTWGETELFIGDTELEPAEECFDFLSQDTDFLCHPKSGINKFSDL # QTEGGSSSSLAGPQTPTTGSDESLNQPPHIRLK] # end gene g90 ### # # ----- sequence number 90 (length = 3967, name = scaffold_7_8396482-8400448) ----- # # annotation: # Sequence scaffold_7_8396482-8400448 length=3967 scaffold_7_8396482-8400448 database start_codon 601 603 . + 0 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database intron 689 1997 . + . transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database intron 2186 2461 . + . transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database intron 2586 2739 . + . transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database intron 2909 3132 . + . transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database CDS 601 688 . + 0 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database CDS 1998 2185 . + 2 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database CDS 2462 2585 . + 0 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database CDS 2740 2908 . + 2 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database CDS 3133 3367 . + 1 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; scaffold_7_8396482-8400448 database stop_codon 3365 3367 . + 0 transcript_id "g_2366-T1.1"; gene_id "g_2366-T1"; # Predicted genes for sequence number 90 on both strands # start gene g91 scaffold_7_8396482-8400448 AUGUSTUS gene 1 3367 0.89 + . g91 scaffold_7_8396482-8400448 AUGUSTUS transcript 1 3367 0.89 + . g91.t1 scaffold_7_8396482-8400448 AUGUSTUS intron 54 598 0.89 + . transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS intron 689 1997 0.98 + . transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS intron 2186 2461 1 + . transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS intron 2586 2739 1 + . transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS intron 2909 3132 1 + . transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 1 53 0.9 + 1 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 599 688 0.97 + 2 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 1998 2185 0.99 + 2 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 2462 2585 1 + 0 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 2740 2908 1 + 2 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS CDS 3133 3367 1 + 1 transcript_id "g91.t1"; gene_id "g91"; scaffold_7_8396482-8400448 AUGUSTUS stop_codon 3365 3367 . + 0 transcript_id "g91.t1"; gene_id "g91"; # protein sequence = [LRNVNNVKGIDTAPELKTMPLSGTPAPPNKRRKPSRIITDLSHVAQHEFEDEPEASEFDLGPKIRSPRDIMLEELSLM # TNKGSKMFRMRKARMEKFIYENNPDLFNTESMENLQNLVPSLGGEMVDIKGHLVGKQGGGKAPVPPPKPGTGAGVNGQDESKKSGQDPNANKSPWELA # MKGDEDLTSTLKSKMPGPKVHCELPKFKSFNRTAIPFGGFEKASQLLTFQLPDIEVAKEDPEPAVVYQHDIGSRPSFNRTPIGWVVSNDASSIHMEMD # TVPFDGETDDL] # end gene g91 ### # # ----- sequence number 91 (length = 3939, name = scaffold_7_10709841-10713779) ----- # # annotation: # Sequence scaffold_7_10709841-10713779 length=3939 scaffold_7_10709841-10713779 database start_codon 601 603 . + 0 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 704 856 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 922 1048 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 1185 1408 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 1509 1630 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 1762 1866 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 1976 2086 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 2144 2296 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 2375 2484 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 2656 2911 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database intron 3014 3197 . + . transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 601 703 . + 0 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 857 921 . + 2 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 1049 1184 . + 0 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 1409 1508 . + 2 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 1631 1761 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 1867 1975 . + 2 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 2087 2143 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 2297 2374 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 2485 2655 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 2912 3013 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database CDS 3198 3339 . + 1 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; scaffold_7_10709841-10713779 database stop_codon 3337 3339 . + 0 transcript_id "g_2382-T1.1"; gene_id "g_2382-T1"; # Predicted genes for sequence number 91 on both strands # start gene g92 scaffold_7_10709841-10713779 AUGUSTUS gene 1 3339 0.52 + . g92 scaffold_7_10709841-10713779 AUGUSTUS transcript 1 3339 0.52 + . g92.t1 scaffold_7_10709841-10713779 AUGUSTUS intron 65 168 0.99 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 318 441 0.91 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 498 606 0.88 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 704 856 0.91 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 922 1048 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 1185 1408 0.96 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 1509 1630 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 1762 1866 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 1976 2086 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 2144 2296 0.68 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 2375 2484 0.99 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 2656 2911 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS intron 3014 3197 1 + . transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 1 64 0.99 + 2 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 169 317 1 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 442 497 0.89 + 2 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 607 703 0.9 + 0 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 857 921 1 + 2 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 1049 1184 0.96 + 0 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 1409 1508 0.96 + 2 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 1631 1761 1 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 1867 1975 1 + 2 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 2087 2143 1 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 2297 2374 0.68 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 2485 2655 1 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 2912 3013 1 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS CDS 3198 3339 0.97 + 1 transcript_id "g92.t1"; gene_id "g92"; scaffold_7_10709841-10713779 AUGUSTUS stop_codon 3337 3339 . + 0 transcript_id "g92.t1"; gene_id "g92"; # protein sequence = [DTKPEDDCFPPDDFSVDHTPTNPYSSTIKEMLTTFGTATYKVGLKVHPNEQDARVPIMCWGSCAYTIQSIERMLVDED # KPLFGGLPCRQEDCLSSLARFGSACWIATSLPTVQAHFIRLLAALVPDPQEKSPCILDVDMFHLLVSLVLSYPALHCQDSSGRSMDAAQLHFLHLVTV # GHLVQILLTSGPVEAAMDQESGGAEREEEEEAICRLYNTIRTHLGSSLPELTSGWHLWRCVKAGILPYLRAAALFFHHLNGAPTPPELHALGSGQWEV # LCGYLSLPSNLMQLYYSYQELLEPLVKGWCSHPDVRQTLQGGDPLVSFPRESNRLIDLPDDYSALINQASSFTCPKSGGDKSRAPTLCLVCGTMLCSQ # SYCCQTELEGEDVGACTAHTFVCGAGLGIFLRVRESQVLFLAGKTKGCFYAPPYLDDYGETDQGLRRGNPLHLCRERYRKIQKLWRQHSITEEIGHAQ # EANQTLVGIDWQHL] # end gene g92 ### # # ----- sequence number 92 (length = 2648, name = scaffold_7_13083665-13086312) ----- # # annotation: # Sequence scaffold_7_13083665-13086312 length=2648 scaffold_7_13083665-13086312 database start_codon 601 603 . + 0 transcript_id "g_2403-T1.1"; gene_id "g_2403-T1"; scaffold_7_13083665-13086312 database intron 767 1062 . + . transcript_id "g_2403-T1.1"; gene_id "g_2403-T1"; scaffold_7_13083665-13086312 database CDS 601 766 . + 0 transcript_id "g_2403-T1.1"; gene_id "g_2403-T1"; scaffold_7_13083665-13086312 database CDS 1063 2048 . + 2 transcript_id "g_2403-T1.1"; gene_id "g_2403-T1"; scaffold_7_13083665-13086312 database stop_codon 2046 2048 . + 0 transcript_id "g_2403-T1.1"; gene_id "g_2403-T1"; # Predicted genes for sequence number 92 on both strands # start gene g93 scaffold_7_13083665-13086312 AUGUSTUS gene 601 2048 0.89 + . g93 scaffold_7_13083665-13086312 AUGUSTUS transcript 601 2048 0.89 + . g93.t1 scaffold_7_13083665-13086312 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g93.t1"; gene_id "g93"; scaffold_7_13083665-13086312 AUGUSTUS intron 767 1062 0.93 + . transcript_id "g93.t1"; gene_id "g93"; scaffold_7_13083665-13086312 AUGUSTUS CDS 601 766 0.89 + 0 transcript_id "g93.t1"; gene_id "g93"; scaffold_7_13083665-13086312 AUGUSTUS CDS 1063 2048 1 + 2 transcript_id "g93.t1"; gene_id "g93"; scaffold_7_13083665-13086312 AUGUSTUS stop_codon 2046 2048 . + 0 transcript_id "g93.t1"; gene_id "g93"; # protein sequence = [MTAKIVDKVSQSIGVFFDDIPKGIYPVREGISDPLPEPGSRFKEECDDHINGNGGVNSLFEEEDTEELSYDNFTQAAA # LRTQTVSFTGSFSVNSRSSGVHWNPGDVIDVVSADIRTTAPTPGSASPASPTAANYYAGTTLRGTMAHAQPDISHMYATPPSYSCSGEMYQDQSAFMA # TSTCTMAYQPPSYAAPKSTVDGALLSIMPDYGGFYQQGCQREIQAFPERKSLPYSLDSLRVPPPLTPLNTIRNFTLAGPATEGPIASAFAPNLPLRPI # LRPRKYPNRPSKTPIHERPYPCPADSCDRRFSRSDELSRHLRIHTGHKPFQCRICMRSFSRSDHLTTHIRTHTGEKPFTCDHCGRKFARSDERRRHTK # IHLRQKDKKSS] # end gene g93 ### # # ----- sequence number 93 (length = 4339, name = scaffold_7_13573786-13578124) ----- # # annotation: # Sequence scaffold_7_13573786-13578124 length=4339 scaffold_7_13573786-13578124 database start_codon 601 603 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 1052 1141 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 1222 1338 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 1523 1743 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 1908 2030 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 2149 2266 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database intron 2404 3523 . + . transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 601 1051 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 1142 1221 . + 2 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 1339 1522 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 1744 1907 . + 2 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 2031 2148 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 2267 2403 . + 2 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database CDS 3524 3739 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; scaffold_7_13573786-13578124 database stop_codon 3737 3739 . + 0 transcript_id "g_2411-T1.1"; gene_id "g_2411-T1"; # Predicted genes for sequence number 93 on both strands # start gene g94 scaffold_7_13573786-13578124 AUGUSTUS gene 910 3739 0.75 + . g94 scaffold_7_13573786-13578124 AUGUSTUS transcript 910 3739 0.75 + . g94.t1 scaffold_7_13573786-13578124 AUGUSTUS start_codon 910 912 . + 0 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 1052 1141 0.9 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 1222 1338 0.92 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 1523 1743 1 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 1908 2030 1 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 2149 2266 0.96 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS intron 2404 3523 0.97 + . transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 910 1051 0.82 + 0 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 1142 1221 0.92 + 2 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 1339 1522 1 + 0 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 1744 1907 1 + 2 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 2031 2148 0.96 + 0 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 2267 2403 1 + 2 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS CDS 3524 3739 0.97 + 0 transcript_id "g94.t1"; gene_id "g94"; scaffold_7_13573786-13578124 AUGUSTUS stop_codon 3737 3739 . + 0 transcript_id "g94.t1"; gene_id "g94"; # protein sequence = [MSEGLKISEEELRAKRTRESVLAPLVQYIRELETKQQEFAETEKLLKDEDPDLRELAVLENEACLSNIQELKQKILDM # LVPEEEADLSDLVLEVTAGVGGQEAMLFTAEIFDMYHSFTQHQGWSFEILDYMKSDMGGVRHASASVSGPQSYKRMKYEAGVHRVQRVPKTEKQGRMH # TSTMTVAILPQPTEILLTINAKDLKIETTRASGAGGQHVNTTDSAVRIVHLPTGVVAECQQERSQLKNKEKAMKVLRAKLYSMRLEEETSKRYTARKV # QIGTKGRSEKIRTYNFPQDRITDHRIGMTIHGVREFLSGEELLEEMNSALHEFSNQETLMDILGENENYVES] # end gene g94 ### # # ----- sequence number 94 (length = 4617, name = scaffold_7_15245011-15249627) ----- # # annotation: # Sequence scaffold_7_15245011-15249627 length=4617 scaffold_7_15245011-15249627 database start_codon 601 603 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database intron 1662 1906 . + . transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database intron 2094 2384 . + . transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database intron 2466 2926 . + . transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database intron 3011 3111 . + . transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database intron 3235 3945 . + . transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 601 1661 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 1907 2093 . + 1 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 2385 2465 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 2927 3010 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 3112 3234 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database CDS 3946 4017 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; scaffold_7_15245011-15249627 database stop_codon 4015 4017 . + 0 transcript_id "g_2418-T1.1"; gene_id "g_2418-T1"; # Predicted genes for sequence number 94 on both strands # start gene g95 scaffold_7_15245011-15249627 AUGUSTUS gene 1 4017 0.58 + . g95 scaffold_7_15245011-15249627 AUGUSTUS transcript 1 4017 0.58 + . g95.t1 scaffold_7_15245011-15249627 AUGUSTUS intron 1 415 0.98 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS intron 1662 1906 0.96 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS intron 2094 2384 0.92 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS intron 2466 2926 0.79 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS intron 3011 3111 0.88 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS intron 3235 3945 0.84 + . transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 416 1661 0.99 + 2 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 1907 2093 0.96 + 1 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 2385 2465 0.85 + 0 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 2927 3010 0.8 + 0 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 3112 3234 0.84 + 0 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS CDS 3946 4017 0.97 + 0 transcript_id "g95.t1"; gene_id "g95"; scaffold_7_15245011-15249627 AUGUSTUS stop_codon 4015 4017 . + 0 transcript_id "g95.t1"; gene_id "g95"; # protein sequence = [YHSILAELQSPTTQGLDPTFMELHPDLPTPAPSPAIHHTPDQSLPDSAPLHLTEHQPWDDEMGFSVDPESPPRSPPRP # CELAIPFNTFDLAPKALCDAAVDEKGQVPLEEHAEKIIQVEVELNHCQKSFSSCEEIQAEEEIALPSLPRRSPPPCEQGLEQEQEARKTERANEGEKG # EMGKEEGVSGGGERAKEMENGVRELEEMEVMEEVIEKDAGDAAEGGRLARGEGCTVAPEVHKIEDVFVIVSEREDMMEDSGEAKQDGQTGTSEGQTEL # EEGAEKTEKRNSRLGEAEGSQGMDGRAEDEVKLPLQSWAEAMQEDRESGSSEEEEDRDRMSEEMIRSLLEDVKLEGAEEEEEGEDMTEARVQEILSQV # QQAEKELCSHVPGWHSESSSVNVEPPTPGRSVSSDLLDRQENSQENSSDSVTSSSRAESGRTRHNGNHSEPSSQDTSLPAPQDSANGRAGLGKEEGTL # VSEKKVQQRVYVESGSDEEQIITTRVFRRRVILKGEQAMHVPGESTTEEQYTDDHGNLITRKVIRKVIRRATTPTPEDQGGDWVSRGHGDPWAIPSFQ # EEEPEPGEGARSSRRKEDRRSGEKTLHS] # end gene g95 ### # # ----- sequence number 95 (length = 3016, name = scaffold_7_17801488-17804503) ----- # # annotation: # Sequence scaffold_7_17801488-17804503 length=3016 scaffold_7_17801488-17804503 database start_codon 601 603 . + 0 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 651 793 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 1021 1141 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 1184 1348 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 1470 1724 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 1816 1967 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 2109 2306 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database intron 2389 2474 . + . transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 601 650 . + 0 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 794 1020 . + 1 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 1142 1183 . + 2 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 1349 1469 . + 2 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 1725 1815 . + 1 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 1968 2108 . + 0 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 2307 2388 . + 0 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database CDS 2475 2530 . + 2 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; scaffold_7_17801488-17804503 database stop_codon 2528 2530 . + 0 transcript_id "g_2422-T1.1"; gene_id "g_2422-T1"; # Predicted genes for sequence number 95 on both strands # start gene g96 scaffold_7_17801488-17804503 AUGUSTUS gene 819 2088 0.39 + . g96 scaffold_7_17801488-17804503 AUGUSTUS transcript 819 2088 0.39 + . g96.t1 scaffold_7_17801488-17804503 AUGUSTUS start_codon 819 821 . + 0 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS intron 1021 1141 0.85 + . transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS intron 1184 1348 0.85 + . transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS intron 1470 1724 1 + . transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS intron 1793 1984 0.77 + . transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS CDS 819 1020 0.59 + 0 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS CDS 1142 1183 0.85 + 2 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS CDS 1349 1469 1 + 2 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS CDS 1725 1792 0.77 + 1 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS CDS 1985 2088 0.77 + 2 transcript_id "g96.t1"; gene_id "g96"; scaffold_7_17801488-17804503 AUGUSTUS stop_codon 2086 2088 . + 0 transcript_id "g96.t1"; gene_id "g96"; # protein sequence = [MAKRVKEAMKKEIQHTKKCVENRQKTIKQLEQESRESVLQNTLSNENKGFALLQKMGYKAGQGLGKQGAGRVEPIPLN # IKMGREGIGMEEVKKRKAEEELQHYHQKVRAKQLNEKQSMEDYRVRVRSEREEKKIEADLRRSQRAWKTGIGLKWTLKRRKMKKKKKKKKKKKKRRRR # RK] # end gene g96 ### # # ----- sequence number 96 (length = 10665, name = scaffold_8_4209297-4219961) ----- # # annotation: # Sequence scaffold_8_4209297-4219961 length=10665 scaffold_8_4209297-4219961 database start_codon 601 603 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 703 1534 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 1628 2606 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 2750 4449 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 4607 5387 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 5499 6994 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database intron 7076 9876 . + . transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 601 702 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 1535 1627 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 2607 2749 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 4450 4606 . + 1 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 5388 5498 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 6995 7075 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database CDS 9877 10065 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; scaffold_8_4209297-4219961 database stop_codon 10063 10065 . + 0 transcript_id "g_2432-T1.1"; gene_id "g_2432-T1"; # Predicted genes for sequence number 96 on both strands # start gene g97 scaffold_8_4209297-4219961 AUGUSTUS gene 1 10065 0.06 + . g97 scaffold_8_4209297-4219961 AUGUSTUS transcript 1 10065 0.06 + . g97.t1 scaffold_8_4209297-4219961 AUGUSTUS intron 1 570 0.92 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 703 1534 1 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 1691 2606 0.64 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 2750 4449 1 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 4607 5387 0.87 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 5499 6994 0.88 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 7076 8793 0.48 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS intron 8842 9876 0.28 + . transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 571 702 0.92 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 1535 1690 0.65 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 2607 2749 1 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 4450 4606 0.87 + 1 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 5388 5498 1 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 6995 7075 1 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 8794 8841 0.48 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS CDS 9877 10065 0.81 + 0 transcript_id "g97.t1"; gene_id "g97"; scaffold_8_4209297-4219961 AUGUSTUS stop_codon 10063 10065 . + 0 transcript_id "g97.t1"; gene_id "g97"; # protein sequence = [VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFASEQQLAKFAEKFQEVKEAAQVARDKSQEKMETSSNHSQVAC # PPSSDILFWFTSRSDVQQESGGRDTPSSNQASSINGTDDEKICFTGPEPAQLKSENERLKTAVEQSNTNAKKWETELQTLRENNARLVDALQESSANV # ESWKKQLSTCKEESDALREKIAELEAQCNEANAEKERNTKLAVRVQELEVELQDKEQELENLRKQAEIIPQLMAECESITEKLQSQITLSLEVVAQPV # WPAAELKNKDLEERIEGLSGEIEDSQQKQGNMKGELKKFMDILDGKIDELHEFRQGLSKLGVDN] # end gene g97 ### # # ----- sequence number 97 (length = 2616, name = scaffold_8_4823923-4826538) ----- # # annotation: # Sequence scaffold_8_4823923-4826538 length=2616 scaffold_8_4823923-4826538 database start_codon 601 603 . + 0 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database intron 910 1065 . + . transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database intron 1210 1336 . + . transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database intron 1611 1786 . + . transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database CDS 601 909 . + 0 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database CDS 1066 1209 . + 0 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database CDS 1337 1610 . + 0 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database CDS 1787 2016 . + 2 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; scaffold_8_4823923-4826538 database stop_codon 2014 2016 . + 0 transcript_id "g_2437-T1.1"; gene_id "g_2437-T1"; # Predicted genes for sequence number 97 on both strands # start gene g98 scaffold_8_4823923-4826538 AUGUSTUS gene 601 2016 0.71 + . g98 scaffold_8_4823923-4826538 AUGUSTUS transcript 601 2016 0.71 + . g98.t1 scaffold_8_4823923-4826538 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS intron 910 1065 0.76 + . transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS intron 1210 1336 0.96 + . transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS intron 1611 1786 1 + . transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS CDS 601 909 0.75 + 0 transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS CDS 1066 1209 0.95 + 0 transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS CDS 1337 1610 1 + 0 transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS CDS 1787 2016 1 + 2 transcript_id "g98.t1"; gene_id "g98"; scaffold_8_4823923-4826538 AUGUSTUS stop_codon 2014 2016 . + 0 transcript_id "g98.t1"; gene_id "g98"; # protein sequence = [MSDPEILTGTDLSLPPKKDTVLDQSQTKDCPDIPQIVSGNPSVRHESPDEPLRGLSLSSHAVLEKAQQRGRVKCSKCG # GSRMFFCYTCCSLVGVSHVEIPSVKLPVKIDIIKHPSEVDGKSTAVHAKILAPDDVTIYTYPCIPEFEGERHKVVLVFPGPGSVSMDDMKQHLRRMAD # SRSPDSPEEPHPKRLRCGKTPAEDPKLGAPHVAAGPGSEVNPLQRVVFIDSTWNQTNRIITDERLQALLQVELKTRKTCFWRHQKGSPDTYLATIEAI # YYFLKDYHEQCLSQEYRGEYDNLLFFYSFLHTLITKAKTSAGKL] # end gene g98 ### # # ----- sequence number 98 (length = 5838, name = scaffold_8_6305207-6311044) ----- # # annotation: # Sequence scaffold_8_6305207-6311044 length=5838 scaffold_8_6305207-6311044 database start_codon 601 603 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 859 957 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 1051 1186 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 1352 2250 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 2404 2542 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 2584 3051 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 3185 3400 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 3535 3695 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 3807 3945 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 4146 4246 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 4351 4522 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 4658 4781 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database intron 4973 5087 . + . transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 601 858 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 958 1050 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 1187 1351 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 2251 2403 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 2543 2583 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 3052 3184 . + 1 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 3401 3534 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 3696 3806 . + 1 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 3946 4145 . + 1 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 4247 4350 . + 2 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 4523 4657 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 4782 4972 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database CDS 5088 5238 . + 1 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; scaffold_8_6305207-6311044 database stop_codon 5236 5238 . + 0 transcript_id "g_2446-T1.1"; gene_id "g_2446-T1"; # Predicted genes for sequence number 98 on both strands # start gene g99 scaffold_8_6305207-6311044 AUGUSTUS gene 601 5238 0.85 + . g99 scaffold_8_6305207-6311044 AUGUSTUS transcript 601 5238 0.85 + . g99.t1 scaffold_8_6305207-6311044 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 859 957 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 1051 1186 0.98 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 1352 2250 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 2404 2542 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 2584 3051 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 3185 3400 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 3535 3695 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 3807 3945 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 4146 4246 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 4351 4522 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 4658 4781 1 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS intron 4973 5087 0.88 + . transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 601 858 0.99 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 958 1050 0.98 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 1187 1351 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 2251 2403 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 2543 2583 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 3052 3184 1 + 1 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 3401 3534 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 3696 3806 1 + 1 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 3946 4145 1 + 1 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 4247 4350 1 + 2 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 4523 4657 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 4782 4972 1 + 0 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS CDS 5088 5238 0.88 + 1 transcript_id "g99.t1"; gene_id "g99"; scaffold_8_6305207-6311044 AUGUSTUS stop_codon 5236 5238 . + 0 transcript_id "g99.t1"; gene_id "g99"; # protein sequence = [MPLLFLERFPWPSLQTYTALSVALLAGSIFSAYTTVTDPGYEAPDVDEPPPIPSGVDIEHLSGGTGDKDLASTVLGYL # VADSLFVWVLVNTACCSLMLIAKMIQCIVFGPLRVSEKQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAALVFLHLMVQLCKDRFEYLSFS # PTTPMNSHVRVLALLVSLLLGCCGLAVVCGLLGAVHGMHTLSFMAAECLLVTVRTGHVIMRYSIHLWDLNHPGTWESKGTYVYYTDFIMELAMLSLDL # MHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVIDNMEARFAVATAEELAANNDDCAICWDAMQTARKLPCGHLFHNSCLRSWLEQ # DTSCPTCRMSLNINGDGGQARAQQHPGGPLEDNMGPGGPAADARPHINHHNHFFHFDGSRIASWLPSFSVEVMHTTNLLGIAQANNSQLNAMAHQIQE # MFPQVPYHLVLQDLQLTRSVEVTTDNILEGRIQVPFPTQPSERALLQGSPASEEAAGASGGEQARPSELDNLEVRGSRFSKSAEERQKMLMQRKDDLL # QQARRRYLSKSPEDEEENPPRLEDDGPDSNMLSHRTLAAAAAERRNENHPDPAP] # end gene g99 ### # # ----- sequence number 99 (length = 3722, name = scaffold_8_9527866-9531587) ----- # # annotation: # Sequence scaffold_8_9527866-9531587 length=3722 scaffold_8_9527866-9531587 database start_codon 601 603 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 730 857 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 1017 1201 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 1251 1432 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 1525 1668 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 1785 1908 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 2181 2403 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 2498 2603 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database intron 2906 3009 . + . transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 601 729 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 858 1016 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 1202 1250 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 1433 1524 . + 2 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 1669 1784 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 1909 2180 . + 1 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 2404 2497 . + 2 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 2604 2905 . + 1 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database CDS 3010 3122 . + 2 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; scaffold_8_9527866-9531587 database stop_codon 3120 3122 . + 0 transcript_id "g_2465-T1.1"; gene_id "g_2465-T1"; # Predicted genes for sequence number 99 on both strands # start gene g100 scaffold_8_9527866-9531587 AUGUSTUS gene 601 3122 0.62 + . g100 scaffold_8_9527866-9531587 AUGUSTUS transcript 601 3122 0.62 + . g100.t1 scaffold_8_9527866-9531587 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 730 857 0.99 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 1017 1201 0.94 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 1251 1432 0.96 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 1525 1668 1 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 1785 1908 1 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 2181 2403 0.79 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 2498 2603 0.97 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS intron 2906 3009 0.95 + . transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 601 729 0.9 + 0 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 858 1016 0.94 + 0 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 1202 1250 0.96 + 0 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 1433 1524 1 + 2 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 1669 1784 1 + 0 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 1909 2180 0.79 + 1 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 2404 2497 0.97 + 2 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 2604 2905 1 + 1 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS CDS 3010 3122 0.95 + 2 transcript_id "g100.t1"; gene_id "g100"; scaffold_8_9527866-9531587 AUGUSTUS stop_codon 3120 3122 . + 0 transcript_id "g100.t1"; gene_id "g100"; # protein sequence = [MEAEPTSNHKVHIPALAQQKNTSLSRVSEVILVVATLNSSLFRLGPTTRLMAGGSEGQFPQGREVLGKTVLVVKVGHY # TVNNLDQPVNMTFKYGNGIKGGVCVFWKDYQNGTGNWSTNGCETNLNDTEVVCSCDHLSFFAVLINSGMVDPVHELPLSYVSYVGSTLSVLFTTLTLV # IYIYKRKGHLEHSVDVHVQLTCALLCLHLFFLVGSLWAWLDYEERVCEALGLLLHYSLLATFSWMAIEGFHLYLLLVRVFNIYIRRYMLKLSLVGWGV # PTIVVVIYGSLGAYGRYSLHSSNSTSATEICWLNSKVDQLGTVSSMMVIVYLGLVLFFNSAMLGVVLVHLSRQRGHGVRHQEGRAKLWKDWATVLGLS # CILGLPWVLAFSTYGPLSLPGNYLFSVCNSMQGLFLFLWFLAWNRKSRTQEGSSYKDPSTHKTETTTFN] # end gene g100 ### # # ----- sequence number 100 (length = 6277, name = scaffold_8_10240036-10246312) ----- # # annotation: # Sequence scaffold_8_10240036-10246312 length=6277 scaffold_8_10240036-10246312 database start_codon 601 603 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 778 996 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 1028 1145 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 1196 1904 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 4635 4852 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 5006 5327 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database intron 5394 5605 . + . transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 601 777 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 997 1027 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 1146 1195 . + 2 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 1905 4634 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 4853 5005 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 5328 5393 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database CDS 5606 5677 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; scaffold_8_10240036-10246312 database stop_codon 5675 5677 . + 0 transcript_id "g_2471-T1.1"; gene_id "g_2471-T1"; # Predicted genes for sequence number 100 on both strands # start gene g101 scaffold_8_10240036-10246312 AUGUSTUS gene 1 5677 0.7 + . g101 scaffold_8_10240036-10246312 AUGUSTUS transcript 1 5677 0.7 + . g101.t1 scaffold_8_10240036-10246312 AUGUSTUS intron 1 419 0.95 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 453 684 0.99 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 778 996 0.99 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 1028 1145 1 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 1196 1904 0.98 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 4635 4852 0.9 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 5006 5327 0.86 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS intron 5394 5605 0.86 + . transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 420 452 0.95 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 685 777 0.99 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 997 1027 1 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 1146 1195 1 + 2 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 1905 4634 0.98 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 4853 5005 0.9 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 5328 5393 0.86 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS CDS 5606 5677 1 + 0 transcript_id "g101.t1"; gene_id "g101"; scaffold_8_10240036-10246312 AUGUSTUS stop_codon 5675 5677 . + 0 transcript_id "g101.t1"; gene_id "g101"; # protein sequence = [EKLKVEDIHKEREHLKLLLSAKEREEGARGMETVKVQLRSTLGDYSGQSVIKGKDNILVKQSHSLDSGQMLQPPSPSH # SQSRPLELGRPSVVWDSAREVDSLQSELEAMKRRQQALENETARLQVMLARKNQECQELAQSRDTVQRQADRQVQDLEEALGDVQKRMLDSESKVKQL # QAHVVAVKEHLGGQASEELRVQLQDVKAKYEGASAEVGRVRNHLKQSEKALEEYKSSEGQLATEAERLGQELGALREERDELAEALLEMEAHMKEAQP # RMLAAVVPAEKFDNMKNLLSNAVDEKERQLAELREDYDRVLEEVADLHREMDKRQTPPDGRGTIPVQEHERVKAGLEEQNASLKRRLADVTAKSQVLI # RDVEESEEEREMLREQLDELNSRLEVDFISLKAHEEAKMELSRAMEELEDKLVEATEKTDHAEAQIQRLQMERVSLNKNVTNLQSANMASQKIQGEVD # ALTSRNDETLKELEVLQKKYENQERELGQVVAENVILKQNLEGEDVRKKEHEQIKSELNTCLEKAKAEISKLMKKDKESDEELRNVKEDHAKLKVKLE # VIQGGMEKEYISLKDHEAMKWELSNAIVELENQVRTATARYESAHVETIKLTQEMEAQKKELDTIQEAIQSKFIPLTVIEEKENLYNAKIKDLTTKLS # EVQKKYDCEKSEAERSRQEKDQLKLDMESVQDRLKTGFILSEKHKEVEEKYNCKIEELTLKLVDMEQQYKEVTVQRAELEEQNALCKMEIHSLQQRLE # AELAKLERFETEHQVLRDTTQRAQAECQKAKEAQHEASQRACASERELQTHSGDNALLLQQHAQAITALEAEVVKYRQALREEAVSSAQRIEDVSSLQ # SELLQANQALEEMRGKEYQVSQLRAEKQRLEEELAELGNKVSGLANQCTEFQFQVGQAQEGEGRARVETEALQEKSQAIEREIKELKERYDMSLSTIE # DLKIRIQTSAEQTEVKDMKITELLTDVERLKQALNGLSQLAYAGNAPNKRQTQLVETLQDQIKSLHQQLADAARQHRDVVSIYRTHLLSAAQGHMDED # VQAALLQIIRMRQEFVC] # end gene g101 ### # # ----- sequence number 101 (length = 2848, name = scaffold_8_12520323-12523170) ----- # # annotation: # Sequence scaffold_8_12520323-12523170 length=2848 scaffold_8_12520323-12523170 database start_codon 601 603 . + 0 transcript_id "g_2493-T1.1"; gene_id "g_2493-T1"; scaffold_8_12520323-12523170 database intron 827 2108 . + . transcript_id "g_2493-T1.1"; gene_id "g_2493-T1"; scaffold_8_12520323-12523170 database CDS 601 826 . + 0 transcript_id "g_2493-T1.1"; gene_id "g_2493-T1"; scaffold_8_12520323-12523170 database CDS 2109 2248 . + 2 transcript_id "g_2493-T1.1"; gene_id "g_2493-T1"; scaffold_8_12520323-12523170 database stop_codon 2246 2248 . + 0 transcript_id "g_2493-T1.1"; gene_id "g_2493-T1"; # Predicted genes for sequence number 101 on both strands # start gene g102 scaffold_8_12520323-12523170 AUGUSTUS gene 1 855 0.96 + . g102 scaffold_8_12520323-12523170 AUGUSTUS transcript 1 855 0.96 + . g102.t1 scaffold_8_12520323-12523170 AUGUSTUS intron 1 220 1 + . transcript_id "g102.t1"; gene_id "g102"; scaffold_8_12520323-12523170 AUGUSTUS CDS 221 855 0.96 + 2 transcript_id "g102.t1"; gene_id "g102"; scaffold_8_12520323-12523170 AUGUSTUS stop_codon 853 855 . + 0 transcript_id "g102.t1"; gene_id "g102"; # protein sequence = [DPTVKDFIGGFTALHYAAMHGRARIARLMLESEFRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFRAEVDPLSDK # GTTPLQLAIIRERSSCVRILLDHSANIDIQNGFLLRYAVIKGNHSYCRMFLQRGADTNLFRLEDGQTPLHLSALRDDVVCAQMLYAYGADTNTINYEG # QTPVAVSVSMSGISRPCLDFLQEVTSKFDCYSGV] # end gene g102 ### # # ----- sequence number 102 (length = 3532, name = scaffold_8_12733164-12736695) ----- # # annotation: # Sequence scaffold_8_12733164-12736695 length=3532 scaffold_8_12733164-12736695 database start_codon 601 603 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 683 968 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 1186 1327 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 1467 1591 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 1780 1870 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 2141 2264 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 2425 2535 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database intron 2626 2752 . + . transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 601 682 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 969 1185 . + 2 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 1328 1466 . + 1 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 1592 1779 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 1871 2140 . + 1 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 2265 2424 . + 1 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 2536 2625 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database CDS 2753 2932 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; scaffold_8_12733164-12736695 database stop_codon 2930 2932 . + 0 transcript_id "g_2496-T1.1"; gene_id "g_2496-T1"; # Predicted genes for sequence number 102 on both strands # start gene g103 scaffold_8_12733164-12736695 AUGUSTUS gene 601 2932 0.88 + . g103 scaffold_8_12733164-12736695 AUGUSTUS transcript 601 2932 0.88 + . g103.t1 scaffold_8_12733164-12736695 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 683 968 0.98 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 1186 1327 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 1467 1591 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 1780 1870 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 2141 2264 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 2425 2535 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS intron 2626 2752 1 + . transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 601 682 0.9 + 0 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 969 1185 0.98 + 2 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 1328 1466 1 + 1 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 1592 1779 1 + 0 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 1871 2140 1 + 1 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 2265 2424 1 + 1 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 2536 2625 1 + 0 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS CDS 2753 2932 1 + 0 transcript_id "g103.t1"; gene_id "g103"; scaffold_8_12733164-12736695 AUGUSTUS stop_codon 2930 2932 . + 0 transcript_id "g103.t1"; gene_id "g103"; # protein sequence = [MAGRDALNMKLPPIQSTAGAVPIRNEKGEISMEKVKVKRYVSGKRPDYAPMESSDEEEEDFQFVKKGKDAEPEMEMEE # EEVSDPRLKRLLNRVSEDVEERLARHRQIAEPELIAESSEDSDEGTWHPEREESSEEEEEEEEEVDDEEIERRRAMMRQRAQERKIEDMEIMEVEEEG # KSGDEPESESEYEEYTDSEDEAEPRLKPVFIRKKDRVTVAEREAEELKQKELEAEAKKQVEERRRYTLKIVEEEAKKEFEENRRTLAALDALDTDGEN # EEEEYEAWKVRELKRIKRDREAREAMEKEKSEIERFHSLTEEERRAELRNNGKVITNKASKGKYKFLQKYYHRGAFFMDGEQEVFKRDFSAPTLEDHF # NKTILPKVMQVKNFGRSGRTKYTHLVDQDTTSFDSAWAQESAQNSKFFKQKAAGVRDVFDRPTVNKRKT] # end gene g103 ### # # ----- sequence number 103 (length = 3879, name = scaffold_8_14129360-14133238) ----- # # annotation: # Sequence scaffold_8_14129360-14133238 length=3879 scaffold_8_14129360-14133238 database start_codon 601 603 . + 0 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database intron 674 744 . + . transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database intron 828 1141 . + . transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database intron 1323 1418 . + . transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database intron 1570 1677 . + . transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database intron 1806 3088 . + . transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 601 673 . + 0 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 745 827 . + 2 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 1142 1322 . + 0 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 1419 1569 . + 2 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 1678 1805 . + 1 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database CDS 3089 3279 . + 2 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; scaffold_8_14129360-14133238 database stop_codon 3277 3279 . + 0 transcript_id "g_2497-T1.1"; gene_id "g_2497-T1"; # Predicted genes for sequence number 103 on both strands # start gene g104 scaffold_8_14129360-14133238 AUGUSTUS gene 1 3279 0.66 + . g104 scaffold_8_14129360-14133238 AUGUSTUS transcript 1 3279 0.66 + . g104.t1 scaffold_8_14129360-14133238 AUGUSTUS intron 1 744 0.73 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 828 1141 1 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 1323 1418 0.98 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 1570 1677 1 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 1806 2456 0.98 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 2629 2810 0.93 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS intron 2906 3088 0.91 + . transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 745 827 0.89 + 2 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 1142 1322 1 + 0 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 1419 1569 0.98 + 2 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 1678 1805 1 + 1 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 2457 2628 0.93 + 2 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 2811 2905 0.93 + 1 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS CDS 3089 3279 0.94 + 2 transcript_id "g104.t1"; gene_id "g104"; scaffold_8_14129360-14133238 AUGUSTUS stop_codon 3277 3279 . + 0 transcript_id "g104.t1"; gene_id "g104"; # protein sequence = [TPMSSMAIPQIIEEACREAEIYHNAGIDGLIIENMHDIPYSFSVGPEVCASMTAVCHAVRASCPSLPLGIQILSAANQ # PALAVALATGLDFIRAEGFVFSHVADEGILNACAGDLLRYRKHIGAEHVQIYTDIKKKHSSHALTSDVSIVETARAAEFFLSDGLIITGTATGLQADP # AELRAILMPMEAVRLAAGRIKSSLVWGEGASLSLRPGEAWLGLGTHPVPACLPQPCLPAPALLEVCLQGPSTAPVGFNCWYGGLGWVQWARVCDVALS # VKIPTLIGSGVTYDNVDHYLDANAMIIGSHFKKGGYWANQVDPERVKRFMEKIHKLRL] # end gene g104 ### # # ----- sequence number 104 (length = 3965, name = scaffold_8_15255543-15259507) ----- # # annotation: # Sequence scaffold_8_15255543-15259507 length=3965 scaffold_8_15255543-15259507 database start_codon 601 603 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 642 752 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 860 1101 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 1134 1341 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 1511 1660 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 1763 1875 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 1917 2046 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 2170 2286 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 2386 2512 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 2642 2764 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 2805 2897 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database intron 3019 3151 . + . transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 601 641 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 753 859 . + 1 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 1102 1133 . + 2 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 1342 1510 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 1661 1762 . + 2 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 1876 1916 . + 2 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 2047 2169 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 2287 2385 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 2513 2641 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 2765 2804 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 2898 3018 . + 2 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database CDS 3152 3365 . + 1 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; scaffold_8_15255543-15259507 database stop_codon 3363 3365 . + 0 transcript_id "g_2501-T1.1"; gene_id "g_2501-T1"; # Predicted genes for sequence number 104 on both strands # start gene g105 scaffold_8_15255543-15259507 AUGUSTUS gene 1 512 0.48 + . g105 scaffold_8_15255543-15259507 AUGUSTUS transcript 1 512 0.48 + . g105.t1 scaffold_8_15255543-15259507 AUGUSTUS intron 132 304 0.9 + . transcript_id "g105.t1"; gene_id "g105"; scaffold_8_15255543-15259507 AUGUSTUS CDS 1 131 0.83 + 0 transcript_id "g105.t1"; gene_id "g105"; scaffold_8_15255543-15259507 AUGUSTUS CDS 305 512 0.56 + 1 transcript_id "g105.t1"; gene_id "g105"; scaffold_8_15255543-15259507 AUGUSTUS stop_codon 510 512 . + 0 transcript_id "g105.t1"; gene_id "g105"; # protein sequence = [KVSGKYCPTPPTTVPPTTSTPSSASPPSTLAPCKPAICDVINSQVFEECHTAVPPNPFVQACRTDLCSGANNSCSSLE # AYASECSKAGVCIDWRNATNGLCGKQRSKSVRHH] # end gene g105 ### # start gene g106 scaffold_8_15255543-15259507 AUGUSTUS gene 754 3365 0.24 + . g106 scaffold_8_15255543-15259507 AUGUSTUS transcript 754 3365 0.24 + . g106.t1 scaffold_8_15255543-15259507 AUGUSTUS start_codon 754 756 . + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 860 1101 0.7 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 1134 1341 0.66 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 1511 1660 0.9 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 1763 1875 0.99 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 1917 2046 1 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 2170 2286 0.99 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 2386 2512 0.91 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 2642 2764 0.91 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 2805 2897 0.96 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS intron 3019 3151 1 + . transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 754 859 0.53 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 1102 1133 0.99 + 2 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 1342 1510 0.66 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 1661 1762 0.9 + 2 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 1876 1916 1 + 2 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 2047 2169 1 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 2287 2385 0.99 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 2513 2641 0.91 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 2765 2804 0.96 + 0 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 2898 3018 1 + 2 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS CDS 3152 3365 1 + 1 transcript_id "g106.t1"; gene_id "g106"; scaffold_8_15255543-15259507 AUGUSTUS stop_codon 3363 3365 . + 0 transcript_id "g106.t1"; gene_id "g106"; # protein sequence = [MELLATNSTATKEGCFCPSNTILFSSYSDTCVPSCDCTGPDGQPKQYGESWTSDCKQCTCDKASMSVQCQPIQCPTTT # NISCAEPGLKLVSTTVDCCPNYTCECDVSLCPAPIVACQPGFEPVISTDTICCPKTECVPKGVCVYKYEEYRPGAKVPSDSCEECICGSTMDPITQLN # NITCTPIICQIKCAQGYEYQTVAGQCCGKCVQTSCVVMMSNNITQLLQFNETWSPPNNKCVKYTCEISNDQYAPKMTETMCPAFNPANCVPGTETTDA # NGCCKSCTLRSVCEVKATTTHLVMNGCNSTLPVEITSCSGACQTSSIYSMESNTVMHQCSCCQDASTTQRQVELKCADGSIVKHSYIHINSCNCHVSD # CNGGATTTRSSSNQRRRRR] # end gene g106 ### # # ----- sequence number 105 (length = 1874, name = scaffold_8_16233034-16234907) ----- # # annotation: # Sequence scaffold_8_16233034-16234907 length=1874 scaffold_8_16233034-16234907 database start_codon 601 603 . + 0 transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database intron 787 871 . + . transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database intron 983 1106 . + . transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database CDS 601 786 . + 0 transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database CDS 872 982 . + 0 transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database CDS 1107 1274 . + 0 transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; scaffold_8_16233034-16234907 database stop_codon 1272 1274 . + 0 transcript_id "g_2508-T1.1"; gene_id "g_2508-T1"; # Predicted genes for sequence number 105 on both strands # start gene g107 scaffold_8_16233034-16234907 AUGUSTUS gene 1 1274 1 + . g107 scaffold_8_16233034-16234907 AUGUSTUS transcript 1 1274 1 + . g107.t1 scaffold_8_16233034-16234907 AUGUSTUS intron 1 212 1 + . transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS intron 334 612 1 + . transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS intron 787 871 1 + . transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS intron 983 1106 1 + . transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS CDS 213 333 1 + 1 transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS CDS 613 786 1 + 0 transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS CDS 872 982 1 + 0 transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS CDS 1107 1274 1 + 0 transcript_id "g107.t1"; gene_id "g107"; scaffold_8_16233034-16234907 AUGUSTUS stop_codon 1272 1274 . + 0 transcript_id "g107.t1"; gene_id "g107"; # protein sequence = [ERGLSTFQFRPHCGEAGSITHLVSAFLTADNISHGLNLKKSPVLQYLYYLAQVPIAMSPLSNNSLFLEYSKNPLREFL # HKGLCVSLSTDDPMQFHYTKEALMEEYAIAAQLWKLSTCDVCEIARNSVMQSGLSHQEKKHFLGANYLKDGPEGNDIRRTNVAQIRMAYRHETLCNEL # SFLVDAVKSEAVSM] # end gene g107 ### # # ----- sequence number 106 (length = 3867, name = scaffold_8_17836805-17840671) ----- # # annotation: # Sequence scaffold_8_17836805-17840671 length=3867 scaffold_8_17836805-17840671 database start_codon 601 603 . + 0 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database intron 606 994 . + . transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database intron 1084 2152 . + . transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database intron 2425 2530 . + . transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database intron 2854 3023 . + . transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database CDS 601 605 . + 0 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database CDS 995 1083 . + 1 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database CDS 2153 2424 . + 2 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database CDS 2531 2853 . + 0 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database CDS 3024 3267 . + 1 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; scaffold_8_17836805-17840671 database stop_codon 3265 3267 . + 0 transcript_id "g_2515-T1.1"; gene_id "g_2515-T1"; # Predicted genes for sequence number 106 on both strands # start gene g108 scaffold_8_17836805-17840671 AUGUSTUS gene 1 3267 0.52 + . g108 scaffold_8_17836805-17840671 AUGUSTUS transcript 1 3267 0.52 + . g108.t1 scaffold_8_17836805-17840671 AUGUSTUS intron 1 994 0.63 + . transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS intron 1084 2152 0.91 + . transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS intron 2425 2530 0.99 + . transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS intron 2854 3023 0.87 + . transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS CDS 995 1083 0.98 + 1 transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS CDS 2153 2424 0.91 + 2 transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS CDS 2531 2853 0.85 + 0 transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS CDS 3024 3267 0.91 + 1 transcript_id "g108.t1"; gene_id "g108"; scaffold_8_17836805-17840671 AUGUSTUS stop_codon 3265 3267 . + 0 transcript_id "g108.t1"; gene_id "g108"; # protein sequence = [LSLATLLLASCVCLADEALAEHRIKHYASGLASLRSRRMVGGTLAPLVPWQAMVSLEVVNGSYAGGALIAPNWVLTAG # RNLFVKKNRIDTQGTEPVIPKVYLGITGRPQANASKEVAVQKVFLHPGFQNHSDWDNNLALIQLKAPVVLGPNVYPIPLPELGQNLADSQGKVGVIAG # WGWGVLLTPAQSLKHLVLPLADDISCTMGNGGRLLYSRPTVDETMFCTGPSRYQENVCFGDAGGALVVRAHSDVYAAGILSFDKVCSTEKYAIYMKLS # HYLSWIHGVLRGDNEESASRRTTVVSEMHSWQQS] # end gene g108 ### # # ----- sequence number 107 (length = 2457, name = scaffold_8_18420258-18422714) ----- # # annotation: # Sequence scaffold_8_18420258-18422714 length=2457 scaffold_8_18420258-18422714 database start_codon 601 603 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database intron 607 740 . + . transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database intron 837 963 . + . transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database intron 1024 1169 . + . transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database intron 1307 1482 . + . transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database intron 1568 1719 . + . transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 601 606 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 741 836 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 964 1023 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 1170 1306 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 1483 1567 . + 1 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database CDS 1720 1857 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; scaffold_8_18420258-18422714 database stop_codon 1855 1857 . + 0 transcript_id "g_2522-T1.1"; gene_id "g_2522-T1"; # Predicted genes for sequence number 107 on both strands # start gene g109 scaffold_8_18420258-18422714 AUGUSTUS gene 601 1857 0.64 + . g109 scaffold_8_18420258-18422714 AUGUSTUS transcript 601 1857 0.64 + . g109.t1 scaffold_8_18420258-18422714 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS intron 607 740 0.82 + . transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS intron 837 1169 0.8 + . transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS intron 1307 1482 1 + . transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS intron 1568 1719 1 + . transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS CDS 601 606 0.82 + 0 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS CDS 741 836 1 + 0 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS CDS 1170 1306 1 + 0 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS CDS 1483 1567 1 + 1 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS CDS 1720 1857 1 + 0 transcript_id "g109.t1"; gene_id "g109"; scaffold_8_18420258-18422714 AUGUSTUS stop_codon 1855 1857 . + 0 transcript_id "g109.t1"; gene_id "g109"; # protein sequence = [MAPKGKVGTKGKKQIFEENEMTLKFYTRVILGANLFLVFALAVYVGSYRSMSTMAKPVLAEDGTLLDGGIDLNMEQGM # AEHLKDVILLTAIVQVLSIISSYFWYLWLLAPARALHLLWVNFLGPWLSSESPTAPDEVNEKKQRRQERRQMKRF] # end gene g109 ### # # ----- sequence number 108 (length = 6571, name = scaffold_9_78989-85559) ----- # # annotation: # Sequence scaffold_9_78989-85559 length=6571 scaffold_9_78989-85559 database start_codon 601 603 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 715 1157 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 1323 1709 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 1829 2360 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 2530 3491 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 3552 3885 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 3952 5394 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database intron 5539 5782 . + . transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 601 714 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 1158 1322 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 1710 1828 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 2361 2529 . + 1 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 3492 3551 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 3886 3951 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 5395 5538 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database CDS 5783 5971 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; scaffold_9_78989-85559 database stop_codon 5969 5971 . + 0 transcript_id "g_2528-T1.1"; gene_id "g_2528-T1"; # Predicted genes for sequence number 108 on both strands # start gene g110 scaffold_9_78989-85559 AUGUSTUS gene 601 3453 0.22 + . g110 scaffold_9_78989-85559 AUGUSTUS transcript 601 3453 0.22 + . g110.t1 scaffold_9_78989-85559 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS intron 715 1157 1 + . transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS intron 1323 1709 1 + . transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS intron 1829 2360 1 + . transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS intron 2530 3258 0.25 + . transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS CDS 601 714 1 + 0 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS CDS 1158 1322 1 + 0 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS CDS 1710 1828 1 + 0 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS CDS 2361 2529 0.38 + 1 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS CDS 3259 3453 0.51 + 0 transcript_id "g110.t1"; gene_id "g110"; scaffold_9_78989-85559 AUGUSTUS stop_codon 3451 3453 . + 0 transcript_id "g110.t1"; gene_id "g110"; # protein sequence = [MPFPFGKSHKSPADIVKNLKDNMAVLERHDLSDKKAEKASEEVSRSLVLMKEVLYGTSDKEPQTEAVAQLAQELYNSG # LLSSLIAHLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYLCTQQNILFMLLKGYEAPEIALNCGIMLRECIRHEPLAKITLSSEQFYDFFRYVEMS # TFDIASDAFATFKTKQQTAIAEGSCLGLQSCSGLQSRSGLQSRSGLQSRSGLQSRSGLQSRGSPTCSKACVLQLHVG] # end gene g110 ### # start gene g111 scaffold_9_78989-85559 AUGUSTUS gene 3516 4406 0.32 + . g111 scaffold_9_78989-85559 AUGUSTUS transcript 3516 4406 0.32 + . g111.t1 scaffold_9_78989-85559 AUGUSTUS start_codon 3516 3518 . + 0 transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS intron 3552 3885 0.86 + . transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS intron 3952 4217 0.6 + . transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS CDS 3516 3551 0.52 + 0 transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS CDS 3886 3951 0.89 + 0 transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS CDS 4218 4406 0.59 + 0 transcript_id "g111.t1"; gene_id "g111"; scaffold_9_78989-85559 AUGUSTUS stop_codon 4404 4406 . + 0 transcript_id "g111.t1"; gene_id "g111"; # protein sequence = [MSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKASTPGLPLTVQASTPGLPLKVQASTPGLPLKVQASTPGLPLTVQ # ASTPGLPPRKQDFSYENP] # end gene g111 ### # start gene g112 scaffold_9_78989-85559 AUGUSTUS gene 5039 5971 0.93 + . g112 scaffold_9_78989-85559 AUGUSTUS transcript 5039 5971 0.93 + . g112.t1 scaffold_9_78989-85559 AUGUSTUS start_codon 5039 5041 . + 0 transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS intron 5063 5394 0.93 + . transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS intron 5539 5782 1 + . transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS CDS 5039 5062 0.93 + 0 transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS CDS 5395 5538 0.95 + 0 transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS CDS 5783 5971 1 + 0 transcript_id "g112.t1"; gene_id "g112"; scaffold_9_78989-85559 AUGUSTUS stop_codon 5969 5971 . + 0 transcript_id "g112.t1"; gene_id "g112"; # protein sequence = [MKPWLLILLLGELLLDRHNFTIMTKYISRPDNLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQNK # LIEFLGKFQNDRTEDEQFNDEKTYLVKQIKDLKRPVTLDP] # end gene g112 ### # # ----- sequence number 109 (length = 8407, name = scaffold_9_2502666-2511072) ----- # # annotation: # Sequence scaffold_9_2502666-2511072 length=8407 scaffold_9_2502666-2511072 database start_codon 601 603 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 670 1925 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 1970 2117 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 2239 2424 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 2494 3180 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 3329 3658 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 3717 4157 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 4259 4471 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 4563 4728 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 4820 5263 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 5372 5481 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 5545 6641 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 6720 6836 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 6945 7322 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database intron 7436 7557 . + . transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 601 669 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 1926 1969 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 2118 2238 . + 1 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 2425 2493 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 3181 3328 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 3659 3716 . + 2 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 4158 4258 . + 1 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 4472 4562 . + 2 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 4729 4819 . + 1 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 5264 5371 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 5482 5544 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 6642 6719 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 6837 6944 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 7323 7435 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database CDS 7558 7807 . + 1 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; scaffold_9_2502666-2511072 database stop_codon 7805 7807 . + 0 transcript_id "g_2532-T1.1"; gene_id "g_2532-T1"; # Predicted genes for sequence number 109 on both strands # start gene g113 scaffold_9_2502666-2511072 AUGUSTUS gene 1 319 0.84 - . g113 scaffold_9_2502666-2511072 AUGUSTUS transcript 1 319 0.84 - . g113.t1 scaffold_9_2502666-2511072 AUGUSTUS intron 75 168 0.84 - . transcript_id "g113.t1"; gene_id "g113"; scaffold_9_2502666-2511072 AUGUSTUS CDS 1 74 0.84 - 2 transcript_id "g113.t1"; gene_id "g113"; scaffold_9_2502666-2511072 AUGUSTUS CDS 169 319 0.85 - 0 transcript_id "g113.t1"; gene_id "g113"; scaffold_9_2502666-2511072 AUGUSTUS start_codon 317 319 . - 0 transcript_id "g113.t1"; gene_id "g113"; # protein sequence = [MSIVTLQLGQCGNQLGHELFDVISNDASDGQRKVYGDCSRERFFNETTNGDLVARAVLVDMEPKVIAQSVAKAAK] # end gene g113 ### # start gene g114 scaffold_9_2502666-2511072 AUGUSTUS gene 601 4070 0.23 + . g114 scaffold_9_2502666-2511072 AUGUSTUS transcript 601 4070 0.23 + . g114.t1 scaffold_9_2502666-2511072 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS intron 670 1925 1 + . transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS intron 1970 2117 1 + . transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS intron 2239 3180 0.9 + . transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS intron 3329 3678 0.29 + . transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS intron 3717 3863 0.43 + . transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 601 669 1 + 0 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 1926 1969 1 + 0 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 2118 2238 1 + 1 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 3181 3328 0.81 + 0 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 3679 3716 0.3 + 2 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS CDS 3864 4070 0.41 + 0 transcript_id "g114.t1"; gene_id "g114"; scaffold_9_2502666-2511072 AUGUSTUS stop_codon 4068 4070 . + 0 transcript_id "g114.t1"; gene_id "g114"; # protein sequence = [MAGVFDIDLDQPEENVSDDELEDAQINDFMEQCTGFEFNMDDCEKIEISEDNVNQGTENIRPECFELLRVLGKGGYGK # AMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSVGERRYIHGRHCLCPRAFVTVAWTVTVAWTVTVAWTVTVAWTVTVAWTV # DCGVDCDCGVDCGVDCGVDCGVDCGVDCGVDA] # end gene g114 ### # start gene g115 scaffold_9_2502666-2511072 AUGUSTUS gene 4135 6028 0.19 + . g115 scaffold_9_2502666-2511072 AUGUSTUS transcript 4135 6028 0.19 + . g115.t1 scaffold_9_2502666-2511072 AUGUSTUS start_codon 4135 4137 . + 0 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS intron 4259 4471 1 + . transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS intron 4563 4728 1 + . transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS intron 4820 5263 1 + . transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS intron 5372 5481 1 + . transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS intron 5545 5866 1 + . transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 4135 4258 0.44 + 0 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 4472 4562 1 + 2 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 4729 4819 1 + 1 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 5264 5371 1 + 0 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 5482 5544 1 + 0 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS CDS 5867 6028 0.42 + 0 transcript_id "g115.t1"; gene_id "g115"; scaffold_9_2502666-2511072 AUGUSTUS stop_codon 6026 6028 . + 0 transcript_id "g115.t1"; gene_id "g115"; # protein sequence = [MLLIVILSFYLAEISMALGHLHQKGIIYRDLKPENIMLNNHGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILM # RSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEARDLLKRLLKRNASSRLGAGVEDATEVQPPFTGENRKKTIDKILK # CKLNLPPYLTQEARDLLKRVQSDGSERHGSHAPNAM] # end gene g115 ### # start gene g116 scaffold_9_2502666-2511072 AUGUSTUS gene 6131 7807 0.07 + . g116 scaffold_9_2502666-2511072 AUGUSTUS transcript 6131 7807 0.07 + . g116.t1 scaffold_9_2502666-2511072 AUGUSTUS start_codon 6131 6133 . + 0 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS intron 6149 6442 0.27 + . transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS intron 6737 6836 0.29 + . transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS intron 6945 7322 1 + . transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS intron 7436 7557 1 + . transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS CDS 6131 6148 0.38 + 0 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS CDS 6443 6736 0.19 + 0 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS CDS 6837 6944 0.66 + 0 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS CDS 7323 7435 1 + 0 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS CDS 7558 7807 1 + 1 transcript_id "g116.t1"; gene_id "g116"; scaffold_9_2502666-2511072 AUGUSTUS stop_codon 7805 7807 . + 0 transcript_id "g116.t1"; gene_id "g116"; # protein sequence = [MPREVQAVSLAVSLAVSLAVSLAVSLAVGLALSLAVGLAVGLAVGLAVGLALSLAVGLALSLALSLFSLPSSGPPLLQ # THQLGGAAGQEGGSSVQAFPCKQLIVQSAEDVSQFDSKFTSQTPVDSPDDSTLSESANQAFLGFTYVAPSVLEHVKGKFSFEPKIRSPRRFLGSPRTP # VSPIKFSSGDCWPRGPLHPGTAALQSPQEQAMEVSTPEQMDVVATSEASAPLPIRQPAGTNPAQFKQHTFPVMAKRPEHLRMNL] # end gene g116 ### # # ----- sequence number 110 (length = 2230, name = scaffold_9_5212173-5214402) ----- # # annotation: # Sequence scaffold_9_5212173-5214402 length=2230 scaffold_9_5212173-5214402 database start_codon 601 603 . + 0 transcript_id "g_2540-T1.1"; gene_id "g_2540-T1"; scaffold_9_5212173-5214402 database intron 743 1292 . + . transcript_id "g_2540-T1.1"; gene_id "g_2540-T1"; scaffold_9_5212173-5214402 database CDS 601 742 . + 0 transcript_id "g_2540-T1.1"; gene_id "g_2540-T1"; scaffold_9_5212173-5214402 database CDS 1293 1630 . + 2 transcript_id "g_2540-T1.1"; gene_id "g_2540-T1"; scaffold_9_5212173-5214402 database stop_codon 1628 1630 . + 0 transcript_id "g_2540-T1.1"; gene_id "g_2540-T1"; # Predicted genes for sequence number 110 on both strands # start gene g117 scaffold_9_5212173-5214402 AUGUSTUS gene 601 1630 0.87 + . g117 scaffold_9_5212173-5214402 AUGUSTUS transcript 601 1630 0.87 + . g117.t1 scaffold_9_5212173-5214402 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g117.t1"; gene_id "g117"; scaffold_9_5212173-5214402 AUGUSTUS intron 743 1292 1 + . transcript_id "g117.t1"; gene_id "g117"; scaffold_9_5212173-5214402 AUGUSTUS CDS 601 742 0.87 + 0 transcript_id "g117.t1"; gene_id "g117"; scaffold_9_5212173-5214402 AUGUSTUS CDS 1293 1630 1 + 2 transcript_id "g117.t1"; gene_id "g117"; scaffold_9_5212173-5214402 AUGUSTUS stop_codon 1628 1630 . + 0 transcript_id "g117.t1"; gene_id "g117"; # protein sequence = [MVVGAFPIAKLLYLGVRQMSKPVANRIKAGARRSEFFKNYVCLPPAQLYHWIEMRTKMRIMGFRGSTIKPLNEDAAAE # LGAELLGEAIIFVIGGGCMVLEYSRQAMNSRRKEDELNETITSLQTQLGELALTTETLDAQLREMNRLLLSYPVASATASK] # end gene g117 ### # # ----- sequence number 111 (length = 3194, name = scaffold_9_6842763-6845956) ----- # # annotation: # Sequence scaffold_9_6842763-6845956 length=3194 scaffold_9_6842763-6845956 database start_codon 601 603 . + 0 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 676 799 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 892 1114 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 1181 1305 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 1408 1525 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 1591 1692 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 1745 1893 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 1976 2075 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 2167 2286 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database intron 2395 2529 . + . transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 601 675 . + 0 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 800 891 . + 0 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 1115 1180 . + 1 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 1306 1407 . + 1 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 1526 1590 . + 1 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 1693 1744 . + 2 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 1894 1975 . + 1 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 2076 2166 . + 0 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 2287 2394 . + 2 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database CDS 2530 2594 . + 2 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; scaffold_9_6842763-6845956 database stop_codon 2592 2594 . + 0 transcript_id "g_2552-T1.1"; gene_id "g_2552-T1"; # Predicted genes for sequence number 111 on both strands # start gene g118 scaffold_9_6842763-6845956 AUGUSTUS gene 601 2594 0.08 + . g118 scaffold_9_6842763-6845956 AUGUSTUS transcript 601 2594 0.08 + . g118.t1 scaffold_9_6842763-6845956 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 676 799 1 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 892 1114 0.51 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 1181 1305 0.76 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 1408 1525 0.78 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 1591 1692 1 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 1745 1893 0.95 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 1976 2087 0.35 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 2167 2286 1 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS intron 2395 2529 0.54 + . transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 601 675 0.93 + 0 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 800 891 1 + 0 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 1115 1180 0.51 + 1 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 1306 1407 0.78 + 1 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 1526 1590 1 + 1 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 1693 1744 1 + 2 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 1894 1975 0.95 + 1 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 2088 2166 0.35 + 0 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 2287 2394 1 + 2 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS CDS 2530 2594 0.54 + 2 transcript_id "g118.t1"; gene_id "g118"; scaffold_9_6842763-6845956 AUGUSTUS stop_codon 2592 2594 . + 0 transcript_id "g118.t1"; gene_id "g118"; # protein sequence = [MSVRLPTMSVLPPVRRDRIIAQLPQCFCEEAALHTKDSFHTKVKTACQEQRTGTVGFKISKVIVVGDLAVGKTCLINR # FCKDAFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQIVIIVFDVNDVASFDHTRQWLEDALKENDPTSVQLFLVGTKKD # LSYAQLEKDAIKLSQEIRAEYWAVSSLTGDNVREFFFRVASLAFEANVLAELEKSGSRKIGDIVEISSNSNNPNTASKKKPNCCQ] # end gene g118 ### # # ----- sequence number 112 (length = 4654, name = scaffold_9_6877597-6882250) ----- # # annotation: # Sequence scaffold_9_6877597-6882250 length=4654 scaffold_9_6877597-6882250 database start_codon 601 603 . + 0 transcript_id "g_2553-T1.1"; gene_id "g_2553-T1"; scaffold_9_6877597-6882250 database intron 688 3397 . + . transcript_id "g_2553-T1.1"; gene_id "g_2553-T1"; scaffold_9_6877597-6882250 database CDS 601 687 . + 0 transcript_id "g_2553-T1.1"; gene_id "g_2553-T1"; scaffold_9_6877597-6882250 database CDS 3398 4054 . + 0 transcript_id "g_2553-T1.1"; gene_id "g_2553-T1"; scaffold_9_6877597-6882250 database stop_codon 4052 4054 . + 0 transcript_id "g_2553-T1.1"; gene_id "g_2553-T1"; # Predicted genes for sequence number 112 on both strands # start gene g119 scaffold_9_6877597-6882250 AUGUSTUS gene 601 4054 0.84 + . g119 scaffold_9_6877597-6882250 AUGUSTUS transcript 601 4054 0.84 + . g119.t1 scaffold_9_6877597-6882250 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g119.t1"; gene_id "g119"; scaffold_9_6877597-6882250 AUGUSTUS intron 688 3397 0.85 + . transcript_id "g119.t1"; gene_id "g119"; scaffold_9_6877597-6882250 AUGUSTUS CDS 601 687 0.98 + 0 transcript_id "g119.t1"; gene_id "g119"; scaffold_9_6877597-6882250 AUGUSTUS CDS 3398 4054 0.92 + 0 transcript_id "g119.t1"; gene_id "g119"; scaffold_9_6877597-6882250 AUGUSTUS stop_codon 4052 4054 . + 0 transcript_id "g119.t1"; gene_id "g119"; # protein sequence = [MVDREQLVQKARLAEQAERYDDMAAAMKSVTELNEALSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK # IEMVRAYREKIEKELEAVCQDVLNLLDNFLIKNCSETQHESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLA # LNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDEGGEGNN] # end gene g119 ### # # ----- sequence number 113 (length = 3472, name = scaffold_9_8163559-8167030) ----- # # annotation: # Sequence scaffold_9_8163559-8167030 length=3472 scaffold_9_8163559-8167030 database start_codon 601 603 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 640 871 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 941 1436 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 1539 1644 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 1778 1954 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 2116 2375 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 2447 2563 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database intron 2746 2849 . + . transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 601 639 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 872 940 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 1437 1538 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 1645 1777 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 1955 2115 . + 2 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 2376 2446 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 2564 2745 . + 1 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database CDS 2850 2872 . + 2 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; scaffold_9_8163559-8167030 database stop_codon 2870 2872 . + 0 transcript_id "g_2558-T1.1"; gene_id "g_2558-T1"; # Predicted genes for sequence number 113 on both strands # start gene g120 scaffold_9_8163559-8167030 AUGUSTUS gene 1450 3078 0.18 + . g120 scaffold_9_8163559-8167030 AUGUSTUS transcript 1450 3078 0.18 + . g120.t1 scaffold_9_8163559-8167030 AUGUSTUS start_codon 1450 1452 . + 0 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS intron 1480 1644 0.62 + . transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS intron 1778 1954 0.98 + . transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS intron 2116 2375 0.99 + . transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS intron 2447 2563 1 + . transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS intron 2746 3067 0.66 + . transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 1450 1479 0.28 + 0 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 1645 1777 0.88 + 0 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 1955 2115 0.99 + 2 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 2376 2446 0.99 + 0 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 2564 2745 0.76 + 1 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS CDS 3068 3078 0.66 + 2 transcript_id "g120.t1"; gene_id "g120"; scaffold_9_8163559-8167030 AUGUSTUS stop_codon 3076 3078 . + 0 transcript_id "g120.t1"; gene_id "g120"; # protein sequence = [MEISRLQAILKSTLYRLKKELNETVFKSVKLWMVIVCILILILVLILVSLALCTVIHEDVDEKYDLASFTVPQHFNGS # FKLPNQTFSAELLYTQSNKTQPLSSELQKKLSDVYQHSPALGRYFSMAEIEGFRNGSVVAKYRLSFLMPQEHDQLKRFTLSREVVYNVLRQHLFDQEP # EKDGMLYIEPASLKMEALP] # end gene g120 ### # # ----- sequence number 114 (length = 2242, name = scaffold_9_8394877-8397118) ----- # # annotation: # Sequence scaffold_9_8394877-8397118 length=2242 scaffold_9_8394877-8397118 database start_codon 601 603 . + 0 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database intron 659 1049 . + . transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database intron 1215 1373 . + . transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database intron 1531 1614 . + . transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database CDS 601 658 . + 0 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database CDS 1050 1214 . + 2 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database CDS 1374 1530 . + 2 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database CDS 1615 1642 . + 1 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; scaffold_9_8394877-8397118 database stop_codon 1640 1642 . + 0 transcript_id "g_2562-T1.1"; gene_id "g_2562-T1"; # Predicted genes for sequence number 114 on both strands # start gene g121 scaffold_9_8394877-8397118 AUGUSTUS gene 1187 1642 0.79 + . g121 scaffold_9_8394877-8397118 AUGUSTUS transcript 1187 1642 0.79 + . g121.t1 scaffold_9_8394877-8397118 AUGUSTUS start_codon 1187 1189 . + 0 transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS intron 1215 1373 0.85 + . transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS intron 1531 1614 0.94 + . transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS CDS 1187 1214 0.87 + 0 transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS CDS 1374 1530 0.8 + 2 transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS CDS 1615 1642 0.94 + 1 transcript_id "g121.t1"; gene_id "g121"; scaffold_9_8394877-8397118 AUGUSTUS stop_codon 1640 1642 . + 0 transcript_id "g121.t1"; gene_id "g121"; # protein sequence = [MKASTATSSGIALVTTIHPPAPSRFDAGSFLGGMMLALILTLAIALGYKLACTKQDVRYRTLREEHEAII] # end gene g121 ### # # ----- sequence number 115 (length = 6215, name = scaffold_9_11685756-11691970) ----- # # annotation: # Sequence scaffold_9_11685756-11691970 length=6215 scaffold_9_11685756-11691970 database start_codon 601 603 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 650 1312 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 1395 2166 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 2258 2694 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 2819 2993 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 3113 3766 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 3881 4033 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 4154 4529 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 4745 4899 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 5084 5274 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database intron 5425 5576 . + . transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 601 649 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 1313 1394 . + 2 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 2167 2257 . + 1 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 2695 2818 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 2994 3112 . + 2 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 3767 3880 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 4034 4153 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 4530 4744 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 4900 5083 . + 1 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 5275 5424 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database CDS 5577 5615 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; scaffold_9_11685756-11691970 database stop_codon 5613 5615 . + 0 transcript_id "g_2575-T1.1"; gene_id "g_2575-T1"; # Predicted genes for sequence number 115 on both strands # start gene g122 scaffold_9_11685756-11691970 AUGUSTUS gene 1 5615 0.16 + . g122 scaffold_9_11685756-11691970 AUGUSTUS transcript 1 5615 0.16 + . g122.t1 scaffold_9_11685756-11691970 AUGUSTUS intron 1 1312 0.39 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 1395 2166 0.54 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 2258 2694 1 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 2750 2993 0.52 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 3113 3766 1 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 3881 4033 1 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 4154 4529 1 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 4745 4899 1 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 5084 5274 0.98 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS intron 5425 5576 0.98 + . transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 1313 1394 0.51 + 2 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 2167 2257 0.78 + 1 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 2695 2749 0.52 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 2994 3112 1 + 2 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 3767 3880 1 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 4034 4153 1 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 4530 4744 1 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 4900 5083 1 + 1 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 5275 5424 0.98 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS CDS 5577 5615 0.98 + 0 transcript_id "g122.t1"; gene_id "g122"; scaffold_9_11685756-11691970 AUGUSTUS stop_codon 5613 5615 . + 0 transcript_id "g122.t1"; gene_id "g122"; # protein sequence = [GCCGSDDKTYMVGGWAWAWCLVSNTQRITLEIMTLQPKCEDVETAEGVAITVTGVAQVKVMTDHDLLAVACEQFLGTL # TVEQIYQDRDQFAQLVREVAAPDVGRMGIEILSFTIKDVYDKLDYLSSLGKTQTASVQRDADIGVAEAERDAGIREAECKKEMMDVKFQADTKMADSK # RELELQKASFNQEVNTKKAEAQLAYELQAAKEQQKIRLEEIEIEVVQRKKQIIIEEKEIQRTEKELIAIVKRPAEAEAYKMQQLAEGQKVKRVLTAQA # EAEKIRKIGEAEALSIEAVGKAEAEKMRLKAEAYLQYGEAAKIALVLDALPKIAGKVAAPLSKTHEIVILSGEGNRVTGEVNRLLAELPVSVNALTGV # DLTKIPLLQKMTGAQA] # end gene g122 ### # # ----- sequence number 116 (length = 4864, name = scaffold_9_12453695-12458558) ----- # # annotation: # Sequence scaffold_9_12453695-12458558 length=4864 scaffold_9_12453695-12458558 database start_codon 601 603 . + 0 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database intron 721 1046 . + . transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database intron 1191 1824 . + . transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database intron 1922 3363 . + . transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database intron 3556 3865 . + . transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database intron 3939 4149 . + . transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 601 720 . + 0 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 1047 1190 . + 0 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 1825 1921 . + 0 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 3364 3555 . + 2 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 3866 3938 . + 2 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database CDS 4150 4264 . + 1 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; scaffold_9_12453695-12458558 database stop_codon 4262 4264 . + 0 transcript_id "g_2580-T1.1"; gene_id "g_2580-T1"; # Predicted genes for sequence number 116 on both strands # start gene g123 scaffold_9_12453695-12458558 AUGUSTUS gene 601 4264 0.66 + . g123 scaffold_9_12453695-12458558 AUGUSTUS transcript 601 4264 0.66 + . g123.t1 scaffold_9_12453695-12458558 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS intron 721 1046 1 + . transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS intron 1191 1824 1 + . transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS intron 1922 3363 0.76 + . transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS intron 3556 3865 1 + . transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS intron 3939 4149 1 + . transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 601 720 0.99 + 0 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 1047 1190 1 + 0 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 1825 1921 1 + 0 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 3364 3555 0.93 + 2 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 3866 3938 1 + 2 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS CDS 4150 4264 0.84 + 1 transcript_id "g123.t1"; gene_id "g123"; scaffold_9_12453695-12458558 AUGUSTUS stop_codon 4262 4264 . + 0 transcript_id "g123.t1"; gene_id "g123"; # protein sequence = [MDGGVTVITNPTVAVRLTSTLSSFESNRRFNRGITIAEFKSKLEMVVGTPAAGMELQLFSTSDKFLQKLDNNEALLGS # YAVDDDCRIHVIDRSGAQIGEYSDLSKVEKFEITDDAYEKRTDSVRSFMKKQRVGRFNEEEMAKKEAELAALEKEEKAAAAAITVGDRCQVKVVGQPT # KIGTVMYVGNTDFKPGHWVGVKYDEPLGKHDGCVNGKRYFECENKYGAFVKPQTVTTGDFPEEDYELDEM] # end gene g123 ### # # ----- sequence number 117 (length = 5523, name = scaffold_9_12671207-12676729) ----- # # annotation: # Sequence scaffold_9_12671207-12676729 length=5523 scaffold_9_12671207-12676729 database start_codon 601 603 . + 0 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 617 2555 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 2637 2892 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 3008 3111 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 3175 3950 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 4106 4560 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database intron 4657 4807 . + . transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 601 616 . + 0 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 2556 2636 . + 2 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 2893 3007 . + 2 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 3112 3174 . + 1 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 3951 4105 . + 1 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 4561 4656 . + 2 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database CDS 4808 4923 . + 2 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; scaffold_9_12671207-12676729 database stop_codon 4921 4923 . + 0 transcript_id "g_2582-T1.1"; gene_id "g_2582-T1"; # Predicted genes for sequence number 117 on both strands # start gene g124 scaffold_9_12671207-12676729 AUGUSTUS gene 601 4923 0.39 + . g124 scaffold_9_12671207-12676729 AUGUSTUS transcript 601 4923 0.39 + . g124.t1 scaffold_9_12671207-12676729 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 617 2555 0.65 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 2637 2892 1 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 3008 3111 1 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 3175 3953 0.6 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 4106 4560 1 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS intron 4657 4807 0.98 + . transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 601 616 0.65 + 0 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 2556 2636 1 + 2 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 2893 3007 1 + 2 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 3112 3174 1 + 1 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 3954 4105 0.6 + 1 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 4561 4656 0.98 + 2 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS CDS 4808 4923 0.99 + 2 transcript_id "g124.t1"; gene_id "g124"; scaffold_9_12671207-12676729 AUGUSTUS stop_codon 4921 4923 . + 0 transcript_id "g124.t1"; gene_id "g124"; # protein sequence = [MSETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYY # RGAAGALLVYDITRETYNALTNWLTDARTLASPNIAIILCGNKKDLGAEREVTFLEASRFAQENELMFLETSALTGENVEEGFLKCARTILTKIESGE # LDPERMGSGIQYGDASLRQLRQPRGSAPQSKLQCSC] # end gene g124 ### # # ----- sequence number 118 (length = 2858, name = scaffold_9_16940642-16943499) ----- # # annotation: # Sequence scaffold_9_16940642-16943499 length=2858 scaffold_9_16940642-16943499 database start_codon 601 603 . + 0 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database intron 694 980 . + . transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database intron 1144 1291 . + . transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database intron 1368 1621 . + . transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database intron 1725 1874 . + . transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database CDS 601 693 . + 0 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database CDS 981 1143 . + 0 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database CDS 1292 1367 . + 2 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database CDS 1622 1724 . + 1 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database CDS 1875 2258 . + 0 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; scaffold_9_16940642-16943499 database stop_codon 2256 2258 . + 0 transcript_id "g_2599-T1.1"; gene_id "g_2599-T1"; # Predicted genes for sequence number 118 on both strands # start gene g125 scaffold_9_16940642-16943499 AUGUSTUS gene 601 2258 0.64 + . g125 scaffold_9_16940642-16943499 AUGUSTUS transcript 601 2258 0.64 + . g125.t1 scaffold_9_16940642-16943499 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS intron 694 980 0.89 + . transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS intron 1144 1291 0.95 + . transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS intron 1368 1621 0.96 + . transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS intron 1725 1874 0.73 + . transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS CDS 601 693 0.89 + 0 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS CDS 981 1143 0.96 + 0 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS CDS 1292 1367 0.96 + 2 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS CDS 1622 1724 0.98 + 1 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS CDS 1875 2258 0.73 + 0 transcript_id "g125.t1"; gene_id "g125"; scaffold_9_16940642-16943499 AUGUSTUS stop_codon 2256 2258 . + 0 transcript_id "g125.t1"; gene_id "g125"; # protein sequence = [MGIADETDRTLFVGNLDQKVTEELLFELFLQAGPLIKVKIPKDNDGKQKSFGFAVFKHEESAPYGMNLLNGISLFGRT # LKVQFRAGSTHINSPENSQNSSPVNTHNPHGARYSKSPDQIASPLFSPPQHQQRSFSSPDSLQRHVMMNNMWQIQMQQLQQLNGGFTGLMAQHSPLAQ # HQTQQHGSRGGNGSVSRQQDELPQRGHRQSYQQNSGSYSSRDQRYPCSEESGAGSNRHHHTQRNDHYQHDDRGGNRSRTHQDRRKEECRDGRWRRY] # end gene g125 ### # # ----- sequence number 119 (length = 3003, name = scaffold_10_4112072-4115074) ----- # # annotation: # Sequence scaffold_10_4112072-4115074 length=3003 scaffold_10_4112072-4115074 database start_codon 601 603 . + 0 transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database intron 1073 1532 . + . transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database intron 2205 2398 . + . transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database CDS 601 1072 . + 0 transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database CDS 1533 2204 . + 2 transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database CDS 2399 2403 . + 2 transcript_id "g_195-T1.1"; gene_id "g_195-T1"; scaffold_10_4112072-4115074 database stop_codon 2401 2403 . + 0 transcript_id "g_195-T1.1"; gene_id "g_195-T1"; # Predicted genes for sequence number 119 on both strands # start gene g126 scaffold_10_4112072-4115074 AUGUSTUS gene 601 2856 0.38 + . g126 scaffold_10_4112072-4115074 AUGUSTUS transcript 601 2856 0.38 + . g126.t1 scaffold_10_4112072-4115074 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS intron 1073 1532 1 + . transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS intron 2205 2800 0.4 + . transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS CDS 601 1072 0.98 + 0 transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS CDS 1533 2204 0.94 + 2 transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS CDS 2801 2856 0.41 + 2 transcript_id "g126.t1"; gene_id "g126"; scaffold_10_4112072-4115074 AUGUSTUS stop_codon 2854 2856 . + 0 transcript_id "g126.t1"; gene_id "g126"; # protein sequence = [MRGSSYSQKTLQVSGSSSRMRVQSPSPSRCRGSSYNNRGRSGFQGSAVEVGTEIHQHHANEKEEMQELNVKFAGYIEK # VQALEHRNAALQAELAALQGRFKGGPTGIGEEYELKFKEMRELIESLTNEKGAADIERGYIEEEVEVWRLRLEEEMALKEEAEMILKEFRQDVDNATL # QKADLEKRVEQLVAEIEFLKKLHDEEVADLVKQIEDSKVTAELDGDRPDLAAYLRNMRVEIEAVAARNVQEAEKWYKGKFDTLKEHAGKHEGQMKSMK # EEISVFHSQVSDLQNQIDSLRARNAALEQQLEDMEVSHQDKLGGLEGTIAQLEAQLCETKLEMSKYLQDYQELLHIKLRLDAEIATYRKLLEGEEQRL # GIAGEGEAAAPHPPSLSHCPRPSSPPT] # end gene g126 ### # # ----- sequence number 120 (length = 7859, name = scaffold_10_4394667-4402525) ----- # # annotation: # Sequence scaffold_10_4394667-4402525 length=7859 scaffold_10_4394667-4402525 database start_codon 601 603 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 661 3215 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 3405 4470 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 4604 5317 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 5569 5881 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 6059 6314 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database intron 6447 7226 . + . transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 601 660 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 3216 3404 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 4471 4603 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 5318 5568 . + 2 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 5882 6058 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 6315 6446 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database CDS 7227 7259 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; scaffold_10_4394667-4402525 database stop_codon 7257 7259 . + 0 transcript_id "g_198-T1.1"; gene_id "g_198-T1"; # Predicted genes for sequence number 120 on both strands # start gene g127 scaffold_10_4394667-4402525 AUGUSTUS gene 3201 6455 0.53 + . g127 scaffold_10_4394667-4402525 AUGUSTUS transcript 3201 6455 0.53 + . g127.t1 scaffold_10_4394667-4402525 AUGUSTUS start_codon 3201 3203 . + 0 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS intron 3405 4470 0.94 + . transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS intron 4604 5317 1 + . transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS intron 5569 5881 1 + . transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS intron 6059 6314 0.99 + . transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS CDS 3201 3404 0.85 + 0 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS CDS 4471 4603 1 + 0 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS CDS 5318 5568 1 + 2 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS CDS 5882 6058 0.99 + 0 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS CDS 6315 6455 0.66 + 0 transcript_id "g127.t1"; gene_id "g127"; scaffold_10_4394667-4402525 AUGUSTUS stop_codon 6453 6455 . + 0 transcript_id "g127.t1"; gene_id "g127"; # protein sequence = [MYLVQLVIMSGTVLLAYYFECTDLFGIHVQGFFCNDAELMKPYPGVDESSFIPPLILYCVVAAAPTAIIFIGEVSMYV # MKSTREALLAQEKTILTGDCCYLNPLIRRVIRFIGVFAFGLFATDIFVNAGQVVTGNLAPYFLTVCKPNYTGSECRFNHQFIANSNICTGSPALVEKA # RRSFPSKDASLSVYAAVYATMYITSTIKTKSSRLAKPVLCLGTLCAAFLTGLNRVSEYRNHCSDVVAGFLLGSSVALFLGICVVNNFKGAHGPPAKQK # MEDYRGLPLMTFPRVESPLETLSAQVP] # end gene g127 ### # # ----- sequence number 121 (length = 2121, name = scaffold_10_5536528-5538648) ----- # # annotation: # Sequence scaffold_10_5536528-5538648 length=2121 scaffold_10_5536528-5538648 database start_codon 601 603 . + 0 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database intron 667 891 . + . transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database intron 978 1085 . + . transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database intron 1205 1348 . + . transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database CDS 601 666 . + 0 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database CDS 892 977 . + 0 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database CDS 1086 1204 . + 1 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database CDS 1349 1521 . + 2 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; scaffold_10_5536528-5538648 database stop_codon 1519 1521 . + 0 transcript_id "g_204-T1.1"; gene_id "g_204-T1"; # Predicted genes for sequence number 121 on both strands # start gene g128 scaffold_10_5536528-5538648 AUGUSTUS gene 635 1521 0.45 + . g128 scaffold_10_5536528-5538648 AUGUSTUS transcript 635 1521 0.45 + . g128.t1 scaffold_10_5536528-5538648 AUGUSTUS start_codon 635 637 . + 0 transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS intron 667 1085 0.45 + . transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS intron 1205 1348 1 + . transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS CDS 635 666 0.45 + 0 transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS CDS 1086 1204 0.6 + 1 transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS CDS 1349 1521 1 + 2 transcript_id "g128.t1"; gene_id "g128"; scaffold_10_5536528-5538648 AUGUSTUS stop_codon 1519 1521 . + 0 transcript_id "g128.t1"; gene_id "g128"; # protein sequence = [MLSLRALSRKRANNFAMKAKRKTLNAGDVMAAMEEMEFERFLQPLREALEAHKKGLKGKKEASEQKRKDKEKKTDAEE # HDKSREEEEDEEHMDEEQEAENEAEEVEN] # end gene g128 ### # # ----- sequence number 122 (length = 3924, name = scaffold_10_5823994-5827917) ----- # # annotation: # Sequence scaffold_10_5823994-5827917 length=3924 scaffold_10_5823994-5827917 database start_codon 601 603 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 664 762 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 890 1133 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 1328 1471 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 1533 1689 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 1875 2130 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 2287 2480 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 2684 2978 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database intron 3082 3168 . + . transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 601 663 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 763 889 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 1134 1327 . + 2 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 1472 1532 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 1690 1874 . + 2 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 2131 2286 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 2481 2683 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 2979 3081 . + 1 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database CDS 3169 3324 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; scaffold_10_5823994-5827917 database stop_codon 3322 3324 . + 0 transcript_id "g_207-T1.1"; gene_id "g_207-T1"; # Predicted genes for sequence number 122 on both strands # start gene g129 scaffold_10_5823994-5827917 AUGUSTUS gene 1 3324 0.82 + . g129 scaffold_10_5823994-5827917 AUGUSTUS transcript 1 3324 0.82 + . g129.t1 scaffold_10_5823994-5827917 AUGUSTUS intron 1 540 1 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 664 773 1 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 890 1133 0.99 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 1328 1471 0.95 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 1533 1689 0.9 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 1875 2130 0.93 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 2287 2480 1 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 2684 2978 1 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS intron 3082 3168 1 + . transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 541 663 1 + 1 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 774 889 0.99 + 1 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 1134 1327 1 + 2 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 1472 1532 0.9 + 0 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 1690 1874 0.88 + 2 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 2131 2286 1 + 0 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 2481 2683 1 + 0 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 2979 3081 1 + 1 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS CDS 3169 3324 1 + 0 transcript_id "g129.t1"; gene_id "g129"; scaffold_10_5823994-5827917 AUGUSTUS stop_codon 3322 3324 . + 0 transcript_id "g129.t1"; gene_id "g129"; # protein sequence = [GQRDDEVLMSCLTYWRRKPKWRSMISLQPGLTFPQHHHQLSYESTPDRLDNQGNVSRRCHNSSDGSESVNGRTPSKLP # SGGYSRIERNGWKVPNGTGEGPSPRAPLQYSSADVGPSSTSKIQGLQEHDNRESVDKRKKFAAEDFPSLNPDAEREVNRNKAAGVWEHPPNPQSRGSK # MMVIRRISREESLPALSSTSPAQQQGPARNGIGPSINKGPIPKSVSLPVKVSRSSSSSPVEQGSQPRLMMRLTRMRSDKKSHFLKALKQDMVGEEKLH # LHCEDEDSFHLHNNNLGGGDDNLNGYERSTGSSPLENGNSKPSNMSMRQQVLCSSTFPQQEVLSSSLEAEHRLLKEMGWQEESENDETCAPLTEDEMR # EFQAISQQLQKNGLRKNGLLKNSPPSDPMTAWRTTNFKLVPNTTEETETSSSDTSDDEA] # end gene g129 ### # # ----- sequence number 123 (length = 1964, name = scaffold_10_8624375-8626338) ----- # # annotation: # Sequence scaffold_10_8624375-8626338 length=1964 scaffold_10_8624375-8626338 database start_codon 601 603 . + 0 transcript_id "g_219-T1.1"; gene_id "g_219-T1"; scaffold_10_8624375-8626338 database intron 625 1001 . + . transcript_id "g_219-T1.1"; gene_id "g_219-T1"; scaffold_10_8624375-8626338 database CDS 601 624 . + 0 transcript_id "g_219-T1.1"; gene_id "g_219-T1"; scaffold_10_8624375-8626338 database CDS 1002 1364 . + 0 transcript_id "g_219-T1.1"; gene_id "g_219-T1"; scaffold_10_8624375-8626338 database stop_codon 1362 1364 . + 0 transcript_id "g_219-T1.1"; gene_id "g_219-T1"; # Predicted genes for sequence number 123 on both strands # start gene g130 scaffold_10_8624375-8626338 AUGUSTUS gene 1 1364 0.82 + . g130 scaffold_10_8624375-8626338 AUGUSTUS transcript 1 1364 0.82 + . g130.t1 scaffold_10_8624375-8626338 AUGUSTUS intron 1 1001 0.82 + . transcript_id "g130.t1"; gene_id "g130"; scaffold_10_8624375-8626338 AUGUSTUS CDS 1002 1364 0.91 + 0 transcript_id "g130.t1"; gene_id "g130"; scaffold_10_8624375-8626338 AUGUSTUS stop_codon 1362 1364 . + 0 transcript_id "g130.t1"; gene_id "g130"; # protein sequence = [GKPEAILNCPKGDPELPVPYDLSFQNTNHASLRIVSNPSDIIRLPVKIVTGSNGKSTSLVLKSTDTVGKLKQKYIKKR # QLAEGCLNLVFNGKTVKDDQRLGVLGAKPGATFIIFQKCIGG] # end gene g130 ### # # ----- sequence number 124 (length = 5184, name = scaffold_10_13119213-13124396) ----- # # annotation: # Sequence scaffold_10_13119213-13124396 length=5184 scaffold_10_13119213-13124396 database start_codon 601 603 . + 0 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 872 1231 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 1353 1708 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 1862 1977 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 2050 2423 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 2505 2911 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 3087 4095 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database intron 4288 4521 . + . transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 601 871 . + 0 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 1232 1352 . + 2 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 1709 1861 . + 1 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 1978 2049 . + 1 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 2424 2504 . + 1 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 2912 3086 . + 1 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 4096 4287 . + 0 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database CDS 4522 4584 . + 0 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; scaffold_10_13119213-13124396 database stop_codon 4582 4584 . + 0 transcript_id "g_251-T1.1"; gene_id "g_251-T1"; # Predicted genes for sequence number 124 on both strands # start gene g131 scaffold_10_13119213-13124396 AUGUSTUS gene 601 4584 0.22 + . g131 scaffold_10_13119213-13124396 AUGUSTUS transcript 601 4584 0.22 + . g131.t1 scaffold_10_13119213-13124396 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 872 1231 0.89 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 1353 1708 0.69 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 1862 1977 0.99 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 2050 2423 1 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 2505 2911 0.99 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 3087 4095 1 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS intron 4288 4521 0.96 + . transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 601 871 0.44 + 0 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 1232 1352 0.89 + 2 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 1709 1861 0.69 + 1 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 1978 2049 1 + 1 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 2424 2504 1 + 1 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 2912 3086 1 + 1 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 4096 4287 1 + 0 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS CDS 4522 4584 0.96 + 0 transcript_id "g131.t1"; gene_id "g131"; scaffold_10_13119213-13124396 AUGUSTUS stop_codon 4582 4584 . + 0 transcript_id "g131.t1"; gene_id "g131"; # protein sequence = [MKGIVEDPTADVAESAGFGCAVTNRFGQLLDDEADPFDIIREAQAEKKKKKKEEVKKPAPKPVKKESQKDRRVPVSGG # EGDISAQTKTSQGQRFPSRGGSGPAEERGERRVGFRDRRTNDNEASMGFSIERPVEQGERGTRGRGGGRGGRGMRGGSGQFRSTDGFDQRGKREFERH # SGSDRTGVRPEEKRGGSGPRNWGSMRDHMSAAADGAPADEGAEREEGADPADTTANQSAEGEVEAAEPPAVEMSLDEWKALQKQSRPKAEFNIRKADT # SVPSDSMVIHKSKKALEEQAEEAEEESMRRPANDITAKLEINFGSLGRPSRGARGGARGGRGRGGPAPRPDTTSPQKPPEKPRVQTRVPNPDDPEDFP # ALA] # end gene g131 ### # # ----- sequence number 125 (length = 2603, name = scaffold_10_13520220-13522822) ----- # # annotation: # Sequence scaffold_10_13520220-13522822 length=2603 scaffold_10_13520220-13522822 database start_codon 601 603 . + 0 transcript_id "g_253-T1.1"; gene_id "g_253-T1"; scaffold_10_13520220-13522822 database intron 731 1281 . + . transcript_id "g_253-T1.1"; gene_id "g_253-T1"; scaffold_10_13520220-13522822 database CDS 601 730 . + 0 transcript_id "g_253-T1.1"; gene_id "g_253-T1"; scaffold_10_13520220-13522822 database CDS 1282 2003 . + 2 transcript_id "g_253-T1.1"; gene_id "g_253-T1"; scaffold_10_13520220-13522822 database stop_codon 2001 2003 . + 0 transcript_id "g_253-T1.1"; gene_id "g_253-T1"; # Predicted genes for sequence number 125 on both strands # start gene g132 scaffold_10_13520220-13522822 AUGUSTUS gene 825 2003 0.45 + . g132 scaffold_10_13520220-13522822 AUGUSTUS transcript 825 2003 0.45 + . g132.t1 scaffold_10_13520220-13522822 AUGUSTUS start_codon 825 827 . + 0 transcript_id "g132.t1"; gene_id "g132"; scaffold_10_13520220-13522822 AUGUSTUS intron 844 1281 0.45 + . transcript_id "g132.t1"; gene_id "g132"; scaffold_10_13520220-13522822 AUGUSTUS CDS 825 843 0.45 + 0 transcript_id "g132.t1"; gene_id "g132"; scaffold_10_13520220-13522822 AUGUSTUS CDS 1282 2003 1 + 2 transcript_id "g132.t1"; gene_id "g132"; scaffold_10_13520220-13522822 AUGUSTUS stop_codon 2001 2003 . + 0 transcript_id "g132.t1"; gene_id "g132"; # protein sequence = [MRSTTAVDECKRKWKNLRDRYLKEVRQENRTKEQGELVPSRWKFRQLLNFLAPFSKSRNGTVSRDDDDLDSPGDASET # TEGDVRPVEMLKVSQSTITPTTQASTMSQLAFVTQLSPVSQGPQMAQLAFLAKLPPGAQISPVSQQSSGRKRSQPRETESPASPCSSSTSAKIPIKTK # RLVKDMDAPHSRARDGDEDELFLLSFVPALKRLAPQKRCETKMKIQQILYEAEFSVASPCETLDHPDPEA] # end gene g132 ### # # ----- sequence number 126 (length = 2829, name = scaffold_11_1978346-1981174) ----- # # annotation: # Sequence scaffold_11_1978346-1981174 length=2829 scaffold_11_1978346-1981174 database start_codon 601 603 . + 0 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database intron 778 1066 . + . transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database intron 1188 1319 . + . transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database intron 1394 1668 . + . transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database intron 1796 2107 . + . transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database CDS 601 777 . + 0 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database CDS 1067 1187 . + 0 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database CDS 1320 1393 . + 2 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database CDS 1669 1795 . + 0 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database CDS 2108 2229 . + 2 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; scaffold_11_1978346-1981174 database stop_codon 2227 2229 . + 0 transcript_id "g_282-T1.1"; gene_id "g_282-T1"; # Predicted genes for sequence number 126 on both strands # start gene g133 scaffold_11_1978346-1981174 AUGUSTUS gene 1 2229 0.67 + . g133 scaffold_11_1978346-1981174 AUGUSTUS transcript 1 2229 0.67 + . g133.t1 scaffold_11_1978346-1981174 AUGUSTUS intron 1 1066 0.7 + . transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS intron 1188 1319 0.8 + . transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS intron 1394 1668 1 + . transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS intron 1796 2107 0.99 + . transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS CDS 1067 1187 0.69 + 0 transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS CDS 1320 1393 0.84 + 2 transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS CDS 1669 1795 1 + 0 transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS CDS 2108 2229 0.99 + 2 transcript_id "g133.t1"; gene_id "g133"; scaffold_11_1978346-1981174 AUGUSTUS stop_codon 2227 2229 . + 0 transcript_id "g133.t1"; gene_id "g133"; # protein sequence = [ITDSSSHILYSKEDASKGKFAFTTEDYDMFEVCFESKSPMGMGRIQDQQVNLDMKHGVEAKNYEEIAKVEKLKPLEVE # LRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSVFSMCCLIGLATWQVFYLRRFFKAKKLIE] # end gene g133 ### # # ----- sequence number 127 (length = 2587, name = scaffold_11_4371998-4374584) ----- # # annotation: # Sequence scaffold_11_4371998-4374584 length=2587 scaffold_11_4371998-4374584 database start_codon 601 603 . + 0 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database intron 617 733 . + . transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database intron 903 1062 . + . transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database intron 1196 1432 . + . transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database intron 1563 1784 . + . transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database CDS 601 616 . + 0 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database CDS 734 902 . + 2 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database CDS 1063 1195 . + 1 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database CDS 1433 1562 . + 0 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database CDS 1785 1987 . + 2 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; scaffold_11_4371998-4374584 database stop_codon 1985 1987 . + 0 transcript_id "g_291-T1.1"; gene_id "g_291-T1"; # Predicted genes for sequence number 127 on both strands # start gene g134 scaffold_11_4371998-4374584 AUGUSTUS gene 601 1987 0.38 + . g134 scaffold_11_4371998-4374584 AUGUSTUS transcript 601 1987 0.38 + . g134.t1 scaffold_11_4371998-4374584 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS intron 617 733 0.41 + . transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS intron 903 1062 1 + . transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS intron 1196 1432 1 + . transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS intron 1563 1784 0.91 + . transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS CDS 601 616 0.41 + 0 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS CDS 734 902 0.99 + 2 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS CDS 1063 1195 1 + 1 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS CDS 1433 1562 0.91 + 0 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS CDS 1785 1987 1 + 2 transcript_id "g134.t1"; gene_id "g134"; scaffold_11_4371998-4374584 AUGUSTUS stop_codon 1985 1987 . + 0 transcript_id "g134.t1"; gene_id "g134"; # protein sequence = [MESEKAAVSDSTPRRKTAVTGSARKLKDNAADWHNLILKWDKLNDEGSTIANKIVNLGISKVSQQQQNVILEDQEGSV # SAKTLEPAGHSRELEEECSKLLAVVDRMSRVVAKMEKLVSTGNGVLELEVFQCGSAGRLVPLFLTWPTAQFAEVSVKLYEAYSQELRLKQAVLQELAH # TTSSDLSMVHLSCWIHQPYLDDSLRLQLEALLLETGHRTL] # end gene g134 ### # # ----- sequence number 128 (length = 4909, name = scaffold_11_5986162-5991070) ----- # # annotation: # Sequence scaffold_11_5986162-5991070 length=4909 scaffold_11_5986162-5991070 database start_codon 601 603 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 733 1532 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 1623 1779 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 1832 1985 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 2156 2371 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 2466 2773 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 2905 2998 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 3096 3180 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 3275 3421 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 3504 3603 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 3709 3894 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database intron 3968 4175 . + . transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 601 732 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 1533 1622 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 1780 1831 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 1986 2155 . + 2 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 2372 2465 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 2774 2904 . + 2 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 2999 3095 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 3181 3274 . + 2 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 3422 3503 . + 1 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 3604 3708 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 3895 3967 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database CDS 4176 4309 . + 2 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; scaffold_11_5986162-5991070 database stop_codon 4307 4309 . + 0 transcript_id "g_301-T1.1"; gene_id "g_301-T1"; # Predicted genes for sequence number 128 on both strands # start gene g135 scaffold_11_5986162-5991070 AUGUSTUS gene 601 4309 0.19 + . g135 scaffold_11_5986162-5991070 AUGUSTUS transcript 601 4309 0.19 + . g135.t1 scaffold_11_5986162-5991070 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 733 1532 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 1623 1779 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 1832 1985 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 2156 2371 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 2466 2773 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 2911 2998 0.58 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 3096 3180 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 3275 3421 1 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 3504 3603 0.69 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 3709 3894 0.99 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS intron 3968 4175 0.59 + . transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 601 732 0.94 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 1533 1622 1 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 1780 1831 1 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 1986 2155 1 + 2 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 2372 2465 1 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 2774 2910 0.58 + 2 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 2999 3095 0.85 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 3181 3274 1 + 2 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 3422 3503 0.7 + 1 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 3604 3708 0.95 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 3895 3967 0.59 + 0 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS CDS 4176 4309 0.97 + 2 transcript_id "g135.t1"; gene_id "g135"; scaffold_11_5986162-5991070 AUGUSTUS stop_codon 4307 4309 . + 0 transcript_id "g135.t1"; gene_id "g135"; # protein sequence = [MFAVRSALRLGFRIAAPAVTRRGCAGSAIPVDDIVNGLTEEQIQLREMVRKFCQEKIAPIADEVDKNNAFPGMRTFWR # EMGELGLLGITAPVEYGGTGLGYLDHVIVMEEMSRVSAAIALSYGAHSNLCVNQMVRHANQKQREKYMSKLLTGEHVGALAMSEPNAGSDVVSMKLKA # RKEGDHYVLNGNKFWITNGPDADVLIVYAKTDPEAVARGITAFIVEKAGGMPGFSTAQKLDKLGMRGSNTCELVFEDCKIPEENVLGPLNKGVYVMMS # GLDLERLVLAAGPIGIMQSVLDFAIPYLHVREAFGQKIGHFQLMQGKMADMYTRLSACRQYVYNVARACDKGHASAMDCAGVILYCAENATQVALDGI # QCLGGNGYINDYPMGRFLRDAKLYEIGAGTSEVRRLIIGRAFNTMYK] # end gene g135 ### # # ----- sequence number 129 (length = 3648, name = scaffold_11_6898121-6901768) ----- # # annotation: # Sequence scaffold_11_6898121-6901768 length=3648 scaffold_11_6898121-6901768 database start_codon 601 603 . + 0 transcript_id "g_305-T1.1"; gene_id "g_305-T1"; scaffold_11_6898121-6901768 database intron 655 1977 . + . transcript_id "g_305-T1.1"; gene_id "g_305-T1"; scaffold_11_6898121-6901768 database CDS 601 654 . + 0 transcript_id "g_305-T1.1"; gene_id "g_305-T1"; scaffold_11_6898121-6901768 database CDS 1978 3048 . + 0 transcript_id "g_305-T1.1"; gene_id "g_305-T1"; scaffold_11_6898121-6901768 database stop_codon 3046 3048 . + 0 transcript_id "g_305-T1.1"; gene_id "g_305-T1"; # Predicted genes for sequence number 129 on both strands # start gene g136 scaffold_11_6898121-6901768 AUGUSTUS gene 601 3048 0.93 + . g136 scaffold_11_6898121-6901768 AUGUSTUS transcript 601 3048 0.93 + . g136.t1 scaffold_11_6898121-6901768 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g136.t1"; gene_id "g136"; scaffold_11_6898121-6901768 AUGUSTUS intron 655 1977 0.93 + . transcript_id "g136.t1"; gene_id "g136"; scaffold_11_6898121-6901768 AUGUSTUS CDS 601 654 1 + 0 transcript_id "g136.t1"; gene_id "g136"; scaffold_11_6898121-6901768 AUGUSTUS CDS 1978 3048 1 + 0 transcript_id "g136.t1"; gene_id "g136"; scaffold_11_6898121-6901768 AUGUSTUS stop_codon 3046 3048 . + 0 transcript_id "g136.t1"; gene_id "g136"; # protein sequence = [MTTAVASPFFDFNEVMNKNNKMLNYNNNILGAPHHPLSVPCNAGLPMPPSPGALLDRKAVGTPSGGGVYQRRHSVTLP # GSKFNQNQFLNSLHSDPSLFSTQGQGGTSCVGNKENRMRERSFSETGERLLSRCLGGPASPTGGGSQVNSSRYKTELCRPFEENGSCKYGDKCQFAHG # IHELRSLSRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRGPPPPSSPLSSSSRLERPRLQHSYSFAGFPSSGGPRDSPTSVTPPPMFPHDELLE # WPSSNPFTYLFRASLGGGGEGNAMGTEPGTPAPYSPSNTPYFSRSMSPHPYEGPSSPPDSLSDLEGYQSSSGGSLSGSESPSLDTTRRLPIFSRLSIS # DD] # end gene g136 ### # # ----- sequence number 130 (length = 3617, name = scaffold_11_8079150-8082766) ----- # # annotation: # Sequence scaffold_11_8079150-8082766 length=3617 scaffold_11_8079150-8082766 database start_codon 601 603 . + 0 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 789 890 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 1079 1224 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 1565 1640 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 1852 2216 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 2408 2521 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database intron 2628 2879 . + . transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 601 788 . + 0 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 891 1078 . + 1 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 1225 1564 . + 2 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 1641 1851 . + 1 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 2217 2407 . + 0 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 2522 2627 . + 1 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database CDS 2880 3017 . + 0 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; scaffold_11_8079150-8082766 database stop_codon 3015 3017 . + 0 transcript_id "g_316-T1.1"; gene_id "g_316-T1"; # Predicted genes for sequence number 130 on both strands # start gene g137 scaffold_11_8079150-8082766 AUGUSTUS gene 601 3617 0.27 + . g137 scaffold_11_8079150-8082766 AUGUSTUS transcript 601 3617 0.27 + . g137.t1 scaffold_11_8079150-8082766 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 789 890 0.82 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 1079 1224 1 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 1565 1640 1 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 1852 2216 1 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 2408 2521 1 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 2628 2965 0.9 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS intron 3092 3617 0.64 + . transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 601 788 0.5 + 0 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 891 1078 0.96 + 1 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 1225 1564 1 + 2 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 1641 1851 1 + 1 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 2217 2407 1 + 0 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 2522 2627 1 + 1 transcript_id "g137.t1"; gene_id "g137"; scaffold_11_8079150-8082766 AUGUSTUS CDS 2966 3091 0.64 + 0 transcript_id "g137.t1"; gene_id "g137"; # protein sequence = [MALSNLAAVALLSMVSLCRCDYSPTWESIDSRPLPEWYDQAKFGIFIHWGVFSVPSFGSEWFWYYLQKQKRQPYVDFM # KNNYPPDFRYQDFAPQFTAEFFDPKEWTDIFASSGAKYIVLTTKHHEGFTLWGSKYSWNWNAMDVGPKRDLVGDMAAALRANSDLRLGLYHSLFEWFN # PLWQQDAANVFSTNVFPTTKTLPELYEIVTKYKPEVLWSDGDGDAPDKYWNSTGFLAWLYNESPVKDTVVTNDRWGYGSICKHGGYYTCADRYQPGHL # LKHKWENCMTIDTKSWGYRRNAPLQDYLNIEQLVQTLVETVSCGGNLLMNVGPTHDGRIAPIFEERLRQMGQWLKVNGEAIYNTSAWRAQKDNTTAGV # WYTSKPQEKAIYAIFFEWPVNGRLFLQEPVMTAQTESDAMPVGLDTETDSCHIEEEEVALEEEEGIVGEIKGGPVCCQ] # end gene g137 ### # # ----- sequence number 131 (length = 4047, name = scaffold_11_13693500-13697546) ----- # # annotation: # Sequence scaffold_11_13693500-13697546 length=4047 scaffold_11_13693500-13697546 database start_codon 601 603 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 703 953 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 1128 1360 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 1534 1647 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 1865 2137 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 2222 2348 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 2512 2656 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 2773 2976 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database intron 3192 3308 . + . transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 601 702 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 954 1127 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 1361 1533 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 1648 1864 . + 1 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 2138 2221 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 2349 2511 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 2657 2772 . + 2 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 2977 3191 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database CDS 3309 3447 . + 1 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; scaffold_11_13693500-13697546 database stop_codon 3445 3447 . + 0 transcript_id "g_360-T1.1"; gene_id "g_360-T1"; # Predicted genes for sequence number 131 on both strands # start gene g138 scaffold_11_13693500-13697546 AUGUSTUS gene 1 3447 0.79 + . g138 scaffold_11_13693500-13697546 AUGUSTUS transcript 1 3447 0.79 + . g138.t1 scaffold_11_13693500-13697546 AUGUSTUS intron 1 565 0.81 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 703 953 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 1128 1360 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 1534 1647 0.96 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 1865 2137 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 2222 2348 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 2512 2656 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 2773 2976 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS intron 3192 3308 1 + . transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 566 702 0.82 + 2 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 954 1127 1 + 0 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 1361 1533 0.96 + 0 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 1648 1864 1 + 1 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 2138 2221 1 + 0 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 2349 2511 1 + 0 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 2657 2772 1 + 2 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 2977 3191 1 + 0 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS CDS 3309 3447 1 + 1 transcript_id "g138.t1"; gene_id "g138"; scaffold_11_13693500-13697546 AUGUSTUS stop_codon 3445 3447 . + 0 transcript_id "g138.t1"; gene_id "g138"; # protein sequence = [SFCDHKSYSATMNTFTPADVDFTFLEEGFCARDIVEQKLNESSNSDDKDAFYVCDLGDVLKKHLRWARALPRVMPFYA # VKCNDSRAVVMTLAALGAGFDCASKTEIQLVQSLGVDPSKIIYANPCKQVSQIKYASAHGVQMMTFDSEVELMKVARCHENAKLVLRIATDDSKAVCR # LSVKFGATLKASRGLLERAQELGLDVIGVSFHVGSGCTDPDTYTQAISDARCVFDIGAELGYNMTLLDIGGGFPGSEDVKLKFEDITNVINVALDKYF # PVDSGVKIIAEPGRYYVASAYTLAVNIIAKKVIMNEQSASDEEDEGTNDRTLMYYVNDGVYGSFNCILYDHAHCLPTLHRKPKPEERMFPCSIWGPTC # DGLDRIVEQCYMPDMQLGDWMLFENMGAYTVAASSTFNGFQKPDIYNIMSRASWKYVQQIRAHGMIFPTEEVCPGGVPSGCGRESGIELPAKPCTTHV # I] # end gene g138 ### # # ----- sequence number 132 (length = 4769, name = scaffold_11_17372161-17376929) ----- # # annotation: # Sequence scaffold_11_17372161-17376929 length=4769 scaffold_11_17372161-17376929 database start_codon 601 603 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 709 875 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 947 1370 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 1489 1674 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 1788 2022 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 2111 2452 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 2537 2688 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 2770 2881 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 2941 3096 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 3207 3311 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 3385 3587 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 3673 3878 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database intron 3932 4027 . + . transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 601 708 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 876 946 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 1371 1488 . + 1 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 1675 1787 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 2023 2110 . + 1 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 2453 2536 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 2689 2769 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 2882 2940 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 3097 3206 . + 1 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 3312 3384 . + 2 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 3588 3672 . + 1 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 3879 3931 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database CDS 4028 4169 . + 1 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; scaffold_11_17372161-17376929 database stop_codon 4167 4169 . + 0 transcript_id "g_375-T1.1"; gene_id "g_375-T1"; # Predicted genes for sequence number 132 on both strands # start gene g139 scaffold_11_17372161-17376929 AUGUSTUS gene 1375 4169 0.09 + . g139 scaffold_11_17372161-17376929 AUGUSTUS transcript 1375 4169 0.09 + . g139.t1 scaffold_11_17372161-17376929 AUGUSTUS start_codon 1375 1377 . + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 1489 1674 0.96 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 1788 2022 1 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 2111 2452 1 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 2537 2688 0.92 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 2770 2881 0.61 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 2941 3096 0.48 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 3207 3311 0.85 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 3385 3587 0.95 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 3673 3878 0.67 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS intron 3932 4027 0.95 + . transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 1375 1488 0.24 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 1675 1787 0.96 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 2023 2110 1 + 1 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 2453 2536 1 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 2689 2769 0.92 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 2882 2940 0.5 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 3097 3206 0.48 + 1 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 3312 3384 0.92 + 2 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 3588 3672 0.9 + 1 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 3879 3931 0.67 + 0 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS CDS 4028 4169 1 + 1 transcript_id "g139.t1"; gene_id "g139"; scaffold_11_17372161-17376929 AUGUSTUS stop_codon 4167 4169 . + 0 transcript_id "g139.t1"; gene_id "g139"; # protein sequence = [MFQMSGEVPPSMSGTCGCSLNGDMYIFGGCDDNGQTNQLYCVNLLNGQYCWRRVIHESGSPPSPRDKLSCWVYNSRVI # YFGGYGHKQLRDIDNNNRSFILDEASWVEDVFWGWNNEVHVFNPTAANWSEPNTSGRAPAPRAAHASATLEHRGYVCGGRVMETRTSDIHCLDLNTWT # WTEIVPVSSVPVGRSWHTMTAISDRGLFLFGGLSVECKPMSDGWVLDVETKKWREIEHPYKEKPRLWHTACLGRDSDVIVFGGSCDFILLVDKGHCND # ALVFQIQPHPLFRLCEDYIAKNMKSSKILQKRLPLLPSKLLQAVQRRMTFYRASKKDVN] # end gene g139 ### # # ----- sequence number 133 (length = 5796, name = scaffold_11_17482779-17488574) ----- # # annotation: # Sequence scaffold_11_17482779-17488574 length=5796 scaffold_11_17482779-17488574 database start_codon 601 603 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 615 959 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 1032 1332 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 1473 1570 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 1722 1923 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 2046 2260 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 2440 2695 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 2895 3097 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 3287 3677 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 3751 3900 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 4022 4228 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 4388 4698 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database intron 4825 5055 . + . transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 601 614 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 960 1031 . + 1 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 1333 1472 . + 1 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 1571 1721 . + 2 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 1924 2045 . + 1 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 2261 2439 . + 2 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 2696 2894 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 3098 3286 . + 2 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 3678 3750 . + 2 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 3901 4021 . + 1 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 4229 4387 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 4699 4824 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database CDS 5056 5196 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; scaffold_11_17482779-17488574 database stop_codon 5194 5196 . + 0 transcript_id "g_376-T1.1"; gene_id "g_376-T1"; # Predicted genes for sequence number 133 on both strands # start gene g140 scaffold_11_17482779-17488574 AUGUSTUS gene 1 5196 0.62 + . g140 scaffold_11_17482779-17488574 AUGUSTUS transcript 1 5196 0.62 + . g140.t1 scaffold_11_17482779-17488574 AUGUSTUS intron 1 959 0.64 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 1032 1332 0.91 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 1473 1570 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 1722 1923 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 2046 2260 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 2440 2695 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 2895 3097 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 3287 3677 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 3751 3900 0.98 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 4022 4228 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 4388 4698 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS intron 4825 5055 1 + . transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 960 1031 0.85 + 1 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 1333 1472 1 + 1 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 1571 1721 1 + 2 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 1924 2045 1 + 1 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 2261 2439 1 + 2 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 2696 2894 1 + 0 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 3098 3286 1 + 2 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 3678 3750 1 + 2 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 3901 4021 0.98 + 1 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 4229 4387 1 + 0 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 4699 4824 1 + 0 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS CDS 5056 5196 1 + 0 transcript_id "g140.t1"; gene_id "g140"; scaffold_11_17482779-17488574 AUGUSTUS stop_codon 5194 5196 . + 0 transcript_id "g140.t1"; gene_id "g140"; # protein sequence = [ISIYGLICCSFSVAEHLEADQNILIPGEWTHVGRVDPSEYLDLTFALKQQNVNLLEQQLRAVSDPDSAQYGKHLTLEE # VASLVRPSQSTLKVVRHWLQMHGIRDCLTVETEDFLQCTMTAGVAEMLLPGSEFHRYAKGEQTLVRSSSRYKVHQTVHPHLDFVGGVHRFPPEGQDLS # EFLAQKRRSGQGFHLGVTPITLRSRYNLTAADVGSVSNNSQAVAQFLEQYYLPADLVEFMALFGHGFPHQSKVDRVVGQQGRGKAGLEASLDVEYIMS # TGANISTWVFTNPGRHETQEPFLQWMMLLSNMSSLPWVHTISYGDDEDSLSSAYMNRINTEFMKAGVRGLSILFASGDSGAGCRHMTKEQNSFRPSFP # ASSPYVTTVGGTSFKNPFQLTYEVTDYISGGGFSNVFAMPDYQVSAVQSYLKGVAGLPPKTYFNTSGRAYPDLAALSDNYWVVANRVPIPWVSGTSAS # TPVVGGILSLINDQRLQKGLPALGFLNPRLYQLKGQGLFDVIEGCHLGCLDEQVQGKGFCAAPSWDPVTGWGTPNYPPLLAALGEN] # end gene g140 ### # # ----- sequence number 134 (length = 3889, name = scaffold_12_148195-152083) ----- # # annotation: # Sequence scaffold_12_148195-152083 length=3889 scaffold_12_148195-152083 database start_codon 412 414 . + 0 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 537 925 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 1012 1148 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 1264 1376 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 1482 1828 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 1956 2159 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 2309 2443 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 2507 2877 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database intron 3050 3130 . + . transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 412 536 . + 0 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 926 1011 . + 1 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 1149 1263 . + 2 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 1377 1481 . + 1 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 1829 1955 . + 1 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 2160 2308 . + 0 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 2444 2506 . + 1 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 2878 3049 . + 1 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database CDS 3131 3289 . + 0 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; scaffold_12_148195-152083 database stop_codon 3287 3289 . + 0 transcript_id "g_387-T1.1"; gene_id "g_387-T1"; # Predicted genes for sequence number 134 on both strands # start gene g141 scaffold_12_148195-152083 AUGUSTUS gene 412 3289 0.86 + . g141 scaffold_12_148195-152083 AUGUSTUS transcript 412 3289 0.86 + . g141.t1 scaffold_12_148195-152083 AUGUSTUS start_codon 412 414 . + 0 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 537 925 0.89 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 1012 1148 0.98 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 1264 1376 1 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 1482 1828 1 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 1956 2159 1 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 2309 2877 0.98 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS intron 3050 3130 0.99 + . transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 412 536 0.89 + 0 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 926 1011 0.98 + 1 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 1149 1263 1 + 2 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 1377 1481 1 + 1 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 1829 1955 1 + 1 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 2160 2308 1 + 0 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 2878 3049 1 + 1 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS CDS 3131 3289 0.99 + 0 transcript_id "g141.t1"; gene_id "g141"; scaffold_12_148195-152083 AUGUSTUS stop_codon 3287 3289 . + 0 transcript_id "g141.t1"; gene_id "g141"; # protein sequence = [MSGLEDNYGISSEFQEENEGERDVEEEPEADYVNPFRYVFYRDRKEWSDLEGVPQDDGPNPVVKIAYSEKFTDVYDYF # RALLKNDEKSERALSLTAEAIELNAANYTVWHYRRVLLQALDKDLREEMNYITAIIEDQPKNYQVWHHRRIVVEWLNDPSEELEFIADILNQDAKNYH # AWQHRQWVIQEYSLWDSELQYVDQLLEEDVRNNSAWNQRHFVISHVTGYSDSAVLDREVKILQDRGLSSHPGLLEQVLELRQSHCSPYLLAFLVDSYE # DALECSSSPQEEYLSRALELCEVLAQEKDTIRKEYWRYVGRSLESKYRPVVRSQVASDPESAPGPEGETST] # end gene g141 ### # # ----- sequence number 135 (length = 3982, name = scaffold_12_1409542-1413523) ----- # # annotation: # Sequence scaffold_12_1409542-1413523 length=3982 scaffold_12_1409542-1413523 database start_codon 601 603 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 619 1153 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 1261 1445 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 1542 1800 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 1865 2459 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 2574 2814 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database intron 2955 3267 . + . transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 601 618 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 1154 1260 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 1446 1541 . + 1 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 1801 1864 . + 1 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 2460 2573 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 2815 2954 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database CDS 3268 3382 . + 1 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; scaffold_12_1409542-1413523 database stop_codon 3380 3382 . + 0 transcript_id "g_391-T1.1"; gene_id "g_391-T1"; # Predicted genes for sequence number 135 on both strands # start gene g142 scaffold_12_1409542-1413523 AUGUSTUS gene 601 3382 0.51 + . g142 scaffold_12_1409542-1413523 AUGUSTUS transcript 601 3382 0.51 + . g142.t1 scaffold_12_1409542-1413523 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS intron 619 2459 0.63 + . transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS intron 2574 2814 0.82 + . transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS intron 2955 3267 1 + . transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS CDS 601 618 0.63 + 0 transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS CDS 2460 2573 0.62 + 0 transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS CDS 2815 2954 0.82 + 0 transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS CDS 3268 3382 0.96 + 1 transcript_id "g142.t1"; gene_id "g142"; scaffold_12_1409542-1413523 AUGUSTUS stop_codon 3380 3382 . + 0 transcript_id "g142.t1"; gene_id "g142"; # protein sequence = [MATAEPDGIEPMWEDERNKRGGRWLITLSKQQRRADLDRFWLETLLCLVGEAFDDHSDDVCGAVVNIRTKGDKIAIWT # TDYDNKDGITHIGRVYKERLGVPSKVVIGYQSHADTATKSGSTTKNKFVV] # end gene g142 ### # # ----- sequence number 136 (length = 3480, name = scaffold_12_2980239-2983718) ----- # # annotation: # Sequence scaffold_12_2980239-2983718 length=3480 scaffold_12_2980239-2983718 database start_codon 601 603 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database intron 616 952 . + . transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database intron 1085 1787 . + . transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database intron 1905 2266 . + . transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database intron 2385 2641 . + . transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database CDS 601 615 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database CDS 953 1084 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database CDS 1788 1904 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database CDS 2267 2384 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database CDS 2642 2880 . + 2 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; scaffold_12_2980239-2983718 database stop_codon 2878 2880 . + 0 transcript_id "g_394-T1.1"; gene_id "g_394-T1"; # Predicted genes for sequence number 136 on both strands # start gene g143 scaffold_12_2980239-2983718 AUGUSTUS gene 1 2880 0.97 + . g143 scaffold_12_2980239-2983718 AUGUSTUS transcript 1 2880 0.97 + . g143.t1 scaffold_12_2980239-2983718 AUGUSTUS intron 1 48 0.99 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS intron 110 397 1 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS intron 616 952 0.98 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS intron 1085 1787 1 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS intron 1905 2266 1 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS intron 2385 2641 1 + . transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 49 109 0.99 + 0 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 398 615 1 + 2 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 953 1084 0.98 + 0 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 1788 1904 1 + 0 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 2267 2384 1 + 0 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS CDS 2642 2880 1 + 2 transcript_id "g143.t1"; gene_id "g143"; scaffold_12_2980239-2983718 AUGUSTUS stop_codon 2878 2880 . + 0 transcript_id "g143.t1"; gene_id "g143"; # protein sequence = [ELSPQEVKRLTQFSKQGYLVGRIGRTFRAEAGKNKGVVEFDPDSLAYGEGGGEEEEEEKEGKRELSAQPELTLNELKD # AHWLHDTPGIMKDHDILNLLTEQEVKMVVPTQAIVPRTFLLKPGMVLFLGAVGRIDYLQGAESCWLSVIASAKLPVHITSLDRADSIYQKHAGQILLG # VPMGGEERMKDFPRLVCQEFELKGLGHYKAIADIKMSSAGWVAVTGVEGSQVVLRAHTPEGSGLSLRSPPLLPHVVTIRGERINKSPAYKLRKPPALV # DSCISYKGADRLNVKKRKSS] # end gene g143 ### # # ----- sequence number 137 (length = 6920, name = scaffold_12_3802298-3809217) ----- # # annotation: # Sequence scaffold_12_3802298-3809217 length=6920 scaffold_12_3802298-3809217 database start_codon 601 603 . + 0 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database intron 860 985 . + . transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database intron 1190 3490 . + . transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database intron 3547 5375 . + . transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database intron 5431 5952 . + . transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database CDS 601 859 . + 0 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database CDS 986 1189 . + 2 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database CDS 3491 3546 . + 2 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database CDS 5376 5430 . + 0 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database CDS 5953 6320 . + 2 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; scaffold_12_3802298-3809217 database stop_codon 6318 6320 . + 0 transcript_id "g_398-T1.1"; gene_id "g_398-T1"; # Predicted genes for sequence number 137 on both strands # start gene g144 scaffold_12_3802298-3809217 AUGUSTUS gene 8 1496 0.11 + . g144 scaffold_12_3802298-3809217 AUGUSTUS transcript 8 1496 0.11 + . g144.t1 scaffold_12_3802298-3809217 AUGUSTUS start_codon 8 10 . + 0 transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS intron 72 985 0.58 + . transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS intron 1190 1488 0.32 + . transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS CDS 8 71 0.29 + 0 transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS CDS 986 1189 0.96 + 2 transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS CDS 1489 1496 0.32 + 2 transcript_id "g144.t1"; gene_id "g144"; scaffold_12_3802298-3809217 AUGUSTUS stop_codon 1494 1496 . + 0 transcript_id "g144.t1"; gene_id "g144"; # protein sequence = [MKSMTANELLPVLPFAPTADFXSLARWRSEGRIAVWLHVPISLGRCAAAASVHGFTYHHAKHDRAVLALWLAEGESRL # PGFATHQIGVAAG] # end gene g144 ### # start gene g145 scaffold_12_3802298-3809217 AUGUSTUS gene 4826 6320 0.54 + . g145 scaffold_12_3802298-3809217 AUGUSTUS transcript 4826 6320 0.54 + . g145.t1 scaffold_12_3802298-3809217 AUGUSTUS start_codon 4826 4828 . + 0 transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS intron 5159 5375 0.99 + . transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS intron 5431 5952 1 + . transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS CDS 4826 5158 0.54 + 0 transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS CDS 5376 5430 0.99 + 0 transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS CDS 5953 6320 1 + 2 transcript_id "g145.t1"; gene_id "g145"; scaffold_12_3802298-3809217 AUGUSTUS stop_codon 6318 6320 . + 0 transcript_id "g145.t1"; gene_id "g145"; # protein sequence = [MQCKSPWRGRLFKLTSNACMEVYKILESSDSVGAAHGQLQTPILEEICLAQSSETKNCGLGGNERLGESSLFSDVEIQ # GKGAGSAPRHLGYSASCFSEDLGNLAKVTSVKQTKNAWKFPGGLSDPGENIGATAVREVFEETGVHSEFKSLLSIRQQHNHPGAFGMSDMYVICRLSP # LSYHIHFCTQECLRCEWLDLEELAQTDATTPITSRIARLLLHGLRQGFQHIDLSMEELPAVYSGMFYQLYHRQLP] # end gene g145 ### # # ----- sequence number 138 (length = 6482, name = scaffold_12_4345074-4351555) ----- # # annotation: # Sequence scaffold_12_4345074-4351555 length=6482 scaffold_12_4345074-4351555 database start_codon 601 603 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 759 925 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 1080 1160 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 1242 1611 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 1777 1952 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 2022 2202 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 2242 2965 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 3098 3205 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 3304 3443 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 3512 3843 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 3984 4263 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 4426 4552 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 4658 4887 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 4969 5178 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database intron 5302 5705 . + . transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 601 758 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 926 1079 . + 1 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 1161 1241 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 1612 1776 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 1953 2021 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 2203 2241 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 2966 3097 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 3206 3303 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 3444 3511 . + 1 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 3844 3983 . + 2 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 4264 4425 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 4553 4657 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 4888 4968 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 5179 5301 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database CDS 5706 5882 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; scaffold_12_4345074-4351555 database stop_codon 5880 5882 . + 0 transcript_id "g_401-T1.1"; gene_id "g_401-T1"; # Predicted genes for sequence number 138 on both strands # start gene g146 scaffold_12_4345074-4351555 AUGUSTUS gene 601 5882 0.59 + . g146 scaffold_12_4345074-4351555 AUGUSTUS transcript 601 5882 0.59 + . g146.t1 scaffold_12_4345074-4351555 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 759 925 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 1080 1160 0.97 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 1242 1611 0.97 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 1777 1952 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 2022 2202 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 2242 2965 0.67 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 3098 3205 0.9 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 3304 3443 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 3512 3843 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 3984 4263 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 4426 4552 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 4658 4887 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 4969 5178 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS intron 5302 5705 1 + . transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 601 758 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 926 1079 1 + 1 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 1161 1241 0.97 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 1612 1776 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 1953 2021 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 2203 2241 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 2966 3097 0.6 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 3206 3303 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 3444 3511 1 + 1 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 3844 3983 1 + 2 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 4264 4425 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 4553 4657 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 4888 4968 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 5179 5301 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS CDS 5706 5882 1 + 0 transcript_id "g146.t1"; gene_id "g146"; scaffold_12_4345074-4351555 AUGUSTUS stop_codon 5880 5882 . + 0 transcript_id "g146.t1"; gene_id "g146"; # protein sequence = [MPEEVEAGQGGGEGVVGLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTL # RHQRPQEEREKQFSSIGEWYKRGVQEKSVSTKFRKGACENCGAVTHKKKDCLERPRKVGAKFTGTGMAPDEHSQINLDLDYDGKRDRWNGYDPEDHTR # IVEEYAKVDLAKRTLKAHKLQEELATGKVIDQTNARNQWADDEDAQEREHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDTAKYLRNLDPN # SAYYDPKTRAMRENPYSNTGMNPDEVGYAGDNFVRYSGDTITMAQTQLFAWEAYDKGSEVHLQADPTKLELLHQSFKVKKEDFKDQQKETILERYGGE # EHLDAPPRELLLAQTEDYVEYSRHGAVLKGQEKAVARSKYEEDVLINNHTCIWGSFWRDGYWGFKCCHSMVKQSYCTGQAGIQTATSSACVPFEEGLE # EQAEEEEEPKTLLEMHREKMKDKKKKKKSKKNKKKHDSDSSDSDDQEKKKDKLKKALLAEDRRLQQVEVLMQVDERKRPYNSLLEVKEPTEEEMEAFR # MKRCRPDDPMANFFN] # end gene g146 ### # # ----- sequence number 139 (length = 2203, name = scaffold_12_4351879-4354081) ----- # # annotation: # Sequence scaffold_12_4351879-4354081 length=2203 scaffold_12_4351879-4354081 database start_codon 601 603 . + 0 transcript_id "g_402-T1.1"; gene_id "g_402-T1"; scaffold_12_4351879-4354081 database intron 851 962 . + . transcript_id "g_402-T1.1"; gene_id "g_402-T1"; scaffold_12_4351879-4354081 database CDS 601 850 . + 0 transcript_id "g_402-T1.1"; gene_id "g_402-T1"; scaffold_12_4351879-4354081 database CDS 963 1603 . + 2 transcript_id "g_402-T1.1"; gene_id "g_402-T1"; scaffold_12_4351879-4354081 database stop_codon 1601 1603 . + 0 transcript_id "g_402-T1.1"; gene_id "g_402-T1"; # Predicted genes for sequence number 139 on both strands # start gene g147 scaffold_12_4351879-4354081 AUGUSTUS gene 1 1603 0.94 + . g147 scaffold_12_4351879-4354081 AUGUSTUS transcript 1 1603 0.94 + . g147.t1 scaffold_12_4351879-4354081 AUGUSTUS intron 1 593 0.94 + . transcript_id "g147.t1"; gene_id "g147"; scaffold_12_4351879-4354081 AUGUSTUS intron 851 962 1 + . transcript_id "g147.t1"; gene_id "g147"; scaffold_12_4351879-4354081 AUGUSTUS CDS 594 850 0.95 + 1 transcript_id "g147.t1"; gene_id "g147"; scaffold_12_4351879-4354081 AUGUSTUS CDS 963 1603 1 + 2 transcript_id "g147.t1"; gene_id "g147"; scaffold_12_4351879-4354081 AUGUSTUS stop_codon 1601 1603 . + 0 transcript_id "g147.t1"; gene_id "g147"; # protein sequence = [VTMLQPILLLCSIAFASSESTYPFWKKGRNITIHSSQLVCSLPGPEGPPGHPGPPGSLGPAGPMGSPGKDGLDGGDGE # KGERGGHGESGRAGNSGKPGMKGRQGVVGKAGPRGQKGLRGAPGVVGSRGIKGEVGEVGEVGEAGGCDCGNAARSAFSVAMTKSYPKERLPIRFSRIL # LNEGGHYNATSGKFVCSVPGVYYFSYDITLSNKHLAIGLVHNGQYKIKTFDANTGNHDVASGSTVLRLQREDQVWLQIFYSEQNGLFFDPFWTDSTFT # GFLVYADQVYLTEEEGKANGEAVS] # end gene g147 ### # # ----- sequence number 140 (length = 4378, name = scaffold_12_4604117-4608494) ----- # # annotation: # Sequence scaffold_12_4604117-4608494 length=4378 scaffold_12_4604117-4608494 database start_codon 601 603 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 660 766 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 886 1155 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 1316 1418 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 1494 1579 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 1668 1879 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 1997 2090 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 2174 2383 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 2610 2811 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 2967 3137 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 3228 3433 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database intron 3565 3743 . + . transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 601 659 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 767 885 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 1156 1315 . + 2 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 1419 1493 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 1580 1667 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 1880 1996 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 2091 2173 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 2384 2609 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 2812 2966 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 3138 3227 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 3434 3564 . + 1 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database CDS 3744 3778 . + 2 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; scaffold_12_4604117-4608494 database stop_codon 3776 3778 . + 0 transcript_id "g_404-T1.1"; gene_id "g_404-T1"; # Predicted genes for sequence number 140 on both strands # start gene g148 scaffold_12_4604117-4608494 AUGUSTUS gene 601 3778 0.58 + . g148 scaffold_12_4604117-4608494 AUGUSTUS transcript 601 3778 0.58 + . g148.t1 scaffold_12_4604117-4608494 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 660 766 0.97 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 886 1155 0.98 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 1316 1418 0.96 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 1494 1579 1 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 1668 1879 1 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 1997 2090 0.74 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 2174 2383 0.98 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 2610 2811 1 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 2967 3137 1 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 3228 3433 1 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS intron 3565 3743 0.9 + . transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 601 659 0.91 + 0 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 767 885 0.97 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 1156 1315 0.94 + 2 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 1419 1493 1 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 1580 1667 1 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 1880 1996 0.74 + 0 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 2091 2173 0.98 + 0 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 2384 2609 0.98 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 2812 2966 1 + 0 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 3138 3227 1 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 3434 3564 1 + 1 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS CDS 3744 3778 0.89 + 2 transcript_id "g148.t1"; gene_id "g148"; scaffold_12_4604117-4608494 AUGUSTUS stop_codon 3776 3778 . + 0 transcript_id "g148.t1"; gene_id "g148"; # protein sequence = [MEQETFQKNQTLAMRKKFIGQSCRLFYSDDPVKIVQARGQYLYDENGMQYLDCISNVQHVGHCHPTVTQAAAAQMEQL # NANTRFLHDNIVRYASRLAATLPEKLCVFYFVNSGSEANDLALRLAHQYTQHEDVIVLDHAYHGHLMSLIDISPYKFRKLSGQKDWVHVAPLPDTYRG # LYREHHPDPAQAYADTVKDLIDQVHLKGRKVSAFFAESLPSVGGQIILPLGYSAKVAEYVRAAGGVFVADEVQTGFGRVGSHFWAFQREGEDFCPDIV # TMGKPMGNGHPLACVVTTEEIAAAFTANGVEYFNTFGGNPVSCAIGLAVLDVIEKEDLRGNATRVGGHLKQLLEELQTKHPSIGDVRGVGLFVGLELV # TDRDQRTPATEAAAQVVQRLKQQKICVSTDGPWENVVKFKPPMCFSMTDAEQVVQHIHLILSDMETNADKLDK] # end gene g148 ### # # ----- sequence number 141 (length = 3238, name = scaffold_12_6535098-6538335) ----- # # annotation: # Sequence scaffold_12_6535098-6538335 length=3238 scaffold_12_6535098-6538335 database start_codon 601 603 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 613 992 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 1103 1246 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 1407 1787 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 1839 2037 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 2104 2217 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 2290 2380 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database intron 2415 2624 . + . transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 601 612 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 993 1102 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 1247 1406 . + 1 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 1788 1838 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 2038 2103 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 2218 2289 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 2381 2414 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database CDS 2625 2638 . + 2 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; scaffold_12_6535098-6538335 database stop_codon 2636 2638 . + 0 transcript_id "g_413-T1.1"; gene_id "g_413-T1"; # Predicted genes for sequence number 141 on both strands # start gene g149 scaffold_12_6535098-6538335 AUGUSTUS gene 633 2660 0.54 + . g149 scaffold_12_6535098-6538335 AUGUSTUS transcript 633 2660 0.54 + . g149.t1 scaffold_12_6535098-6538335 AUGUSTUS start_codon 633 635 . + 0 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS intron 647 1246 0.89 + . transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS intron 1407 1787 0.79 + . transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS intron 1839 2217 0.71 + . transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS intron 2290 2624 0.87 + . transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS CDS 633 646 0.89 + 0 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS CDS 1247 1406 0.96 + 1 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS CDS 1788 1838 0.83 + 0 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS CDS 2218 2289 0.98 + 0 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS CDS 2625 2660 0.87 + 0 transcript_id "g149.t1"; gene_id "g149"; scaffold_12_6535098-6538335 AUGUSTUS stop_codon 2658 2660 . + 0 transcript_id "g149.t1"; gene_id "g149"; # protein sequence = [MLYARYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHDIV # IQQDDEIRLKIVGTRVDKNDIVLSVDLPEGVY] # end gene g149 ### # # ----- sequence number 142 (length = 2283, name = scaffold_12_7430280-7432562) ----- # # annotation: # Sequence scaffold_12_7430280-7432562 length=2283 scaffold_12_7430280-7432562 database start_codon 601 603 . + 0 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database intron 688 946 . + . transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database intron 1056 1211 . + . transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database intron 1321 1430 . + . transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database CDS 601 687 . + 0 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database CDS 947 1055 . + 0 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database CDS 1212 1320 . + 2 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database CDS 1431 1683 . + 1 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; scaffold_12_7430280-7432562 database stop_codon 1681 1683 . + 0 transcript_id "g_420-T1.1"; gene_id "g_420-T1"; # Predicted genes for sequence number 142 on both strands # start gene g150 scaffold_12_7430280-7432562 AUGUSTUS gene 601 1683 0.27 + . g150 scaffold_12_7430280-7432562 AUGUSTUS transcript 601 1683 0.27 + . g150.t1 scaffold_12_7430280-7432562 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS intron 688 946 0.57 + . transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS intron 1056 1211 0.98 + . transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS intron 1321 1430 1 + . transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS CDS 601 687 0.28 + 0 transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS CDS 947 1055 0.58 + 0 transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS CDS 1212 1320 0.98 + 2 transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS CDS 1431 1683 1 + 1 transcript_id "g150.t1"; gene_id "g150"; scaffold_12_7430280-7432562 AUGUSTUS stop_codon 1681 1683 . + 0 transcript_id "g150.t1"; gene_id "g150"; # protein sequence = [MSQATKRKHVVKEVLGDFVTPSDNQQIVKVMGSRGNNLHEAVTAQGENFLVSMPTKFRKNLWIKRGDYVIVDPIEEGE # KVKAEISFILYRDNIQHLQKQQLWPEGFTAETVTEESRGGQQRKEEGMGEEEGSGPSGESDDDESDLFVNTNRCTYQYSESEDETEEDDGEEDDGEEE # EDRPDQKSL] # end gene g150 ### # # ----- sequence number 143 (length = 8683, name = scaffold_12_7517930-7526612) ----- # # annotation: # Sequence scaffold_12_7517930-7526612 length=8683 scaffold_12_7517930-7526612 database start_codon 601 603 . + 0 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 691 1253 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 1366 2619 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 2766 2967 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 3108 4099 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 4178 4762 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 4858 5470 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 5597 5714 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 5793 5872 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 5958 6069 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database intron 6168 7904 . + . transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 601 690 . + 0 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 1254 1365 . + 0 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 2620 2765 . + 2 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 2968 3107 . + 0 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 4100 4177 . + 1 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 4763 4857 . + 1 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 5471 5596 . + 2 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 5715 5792 . + 2 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 5873 5957 . + 2 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 6070 6167 . + 1 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database CDS 7905 8083 . + 2 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; scaffold_12_7517930-7526612 database stop_codon 8081 8083 . + 0 transcript_id "g_421-T1.1"; gene_id "g_421-T1"; # Predicted genes for sequence number 143 on both strands # start gene g151 scaffold_12_7517930-7526612 AUGUSTUS gene 1 8083 0.44 + . g151 scaffold_12_7517930-7526612 AUGUSTUS transcript 1 8083 0.44 + . g151.t1 scaffold_12_7517930-7526612 AUGUSTUS intron 1 565 0.91 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 691 810 0.52 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 828 1787 0.51 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 1814 2619 0.54 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 2766 2967 1 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 3108 4099 0.99 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 4178 4762 0.98 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 4858 5470 1 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 5597 5714 0.93 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 5793 5872 0.99 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 5958 6069 1 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 6168 6661 1 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS intron 6710 7904 1 + . transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 566 690 0.96 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 811 827 0.51 + 0 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 1788 1813 0.53 + 1 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 2620 2765 1 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 2968 3107 1 + 0 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 4100 4177 0.98 + 1 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 4763 4857 1 + 1 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 5471 5596 1 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 5715 5792 0.93 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 5873 5957 0.99 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 6070 6167 1 + 1 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 6662 6709 1 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS CDS 7905 8083 1 + 2 transcript_id "g151.t1"; gene_id "g151"; scaffold_12_7517930-7526612 AUGUSTUS stop_codon 8081 8083 . + 0 transcript_id "g151.t1"; gene_id "g151"; # protein sequence = [CGDIHGQFFDLMKLFEVGGSPATTRYLFLGDYVDRGYFSIEYTVKKRMTVACHKAGKIKYSEQVYDSCMDAFDCLPLA # ALMNQQFLCVHGGLSPEIHTLDDIKKLDRFKEPPAFGPMCDLLWADPLEDFGNEKTQEYFGHNTVRGCSYFYSYPAVCEFLQTNNLLSVIRAHEAQDA # GYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLSICSDDELMNDGDEI # YDANAAAARKEVIKNKIRAIGKMAKMFSVLREESENVLTLKGLTPTGMLPSGVLSGGKQTLQSATIEAIEAIETVEDAEAIRGFSPQHRISSFEEAKG # LDRINERMPPRRDVVNSVGLSMGRMNMGEPNGTDNNSNIQ] # end gene g151 ### # # ----- sequence number 144 (length = 3777, name = scaffold_12_9070615-9074391) ----- # # annotation: # Sequence scaffold_12_9070615-9074391 length=3777 scaffold_12_9070615-9074391 database start_codon 601 603 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database intron 718 876 . + . transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database intron 1071 2036 . + . transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database intron 2199 2372 . + . transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database intron 2518 2684 . + . transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database intron 2796 3045 . + . transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 601 717 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 877 1070 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 2037 2198 . + 1 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 2373 2517 . + 1 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 2685 2795 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database CDS 3046 3177 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; scaffold_12_9070615-9074391 database stop_codon 3175 3177 . + 0 transcript_id "g_428-T1.1"; gene_id "g_428-T1"; # Predicted genes for sequence number 144 on both strands # start gene g152 scaffold_12_9070615-9074391 AUGUSTUS gene 1 3177 0.58 + . g152 scaffold_12_9070615-9074391 AUGUSTUS transcript 1 3177 0.58 + . g152.t1 scaffold_12_9070615-9074391 AUGUSTUS intron 1 592 0.79 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS intron 718 876 0.8 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS intron 1071 2036 0.99 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS intron 2199 2372 1 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS intron 2518 2684 0.86 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS intron 2796 3045 1 + . transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 593 717 0.66 + 2 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 877 1070 1 + 0 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 2037 2198 1 + 1 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 2373 2517 1 + 1 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 2685 2795 0.86 + 0 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS CDS 3046 3177 1 + 0 transcript_id "g152.t1"; gene_id "g152"; scaffold_12_9070615-9074391 AUGUSTUS stop_codon 3175 3177 . + 0 transcript_id "g152.t1"; gene_id "g152"; # protein sequence = [GTMPAATLDHSQRICEVWANNLDEELKRIRQVIRKYNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQ # LGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETLYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSNL # PEEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLSSGSAYVQNG # TGNAYEEEANKQQS] # end gene g152 ### # # ----- sequence number 145 (length = 5998, name = scaffold_12_9147882-9153879) ----- # # annotation: # Sequence scaffold_12_9147882-9153879 length=5998 scaffold_12_9147882-9153879 database start_codon 601 603 . + 0 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database intron 620 3116 . + . transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database intron 3299 3991 . + . transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database intron 4170 4347 . + . transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database intron 4518 4607 . + . transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database intron 4795 5243 . + . transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 601 619 . + 0 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 3117 3298 . + 2 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 3992 4169 . + 0 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 4348 4517 . + 2 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 4608 4794 . + 0 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database CDS 5244 5398 . + 2 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; scaffold_12_9147882-9153879 database stop_codon 5396 5398 . + 0 transcript_id "g_429-T1.1"; gene_id "g_429-T1"; # Predicted genes for sequence number 145 on both strands # start gene g153 scaffold_12_9147882-9153879 AUGUSTUS gene 2805 5398 0.62 + . g153 scaffold_12_9147882-9153879 AUGUSTUS transcript 2805 5398 0.62 + . g153.t1 scaffold_12_9147882-9153879 AUGUSTUS start_codon 2805 2807 . + 0 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS intron 2839 3116 0.66 + . transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS intron 3299 3991 0.97 + . transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS intron 4170 4347 1 + . transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS intron 4518 4607 1 + . transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS intron 4795 5243 1 + . transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 2805 2838 0.66 + 0 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 3117 3298 0.69 + 2 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 3992 4169 1 + 0 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 4348 4517 1 + 2 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 4608 4794 1 + 0 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS CDS 5244 5398 0.97 + 2 transcript_id "g153.t1"; gene_id "g153"; scaffold_12_9147882-9153879 AUGUSTUS stop_codon 5396 5398 . + 0 transcript_id "g153.t1"; gene_id "g153"; # protein sequence = [MQRWYISCGLHGPRSYLTSTMTERFDCYYCRDNLQGKKYVKKEEKHVCTKCFDKLCANTCAECRRPIGVDAKELHHKN # RYWHEDCFRCAKCYKPLASESFSARDDGKIMCGKCGSREDGNRCQGCYKVVMPGSKNVEYKNKVWHEECFTCYDCKKPIGTESFLTKGDDIYCAPCHD # KKFAKKCFHCKQAITSGGISYQDQPWHSECFVCGTCRKPLAGARFTSHEEHVYCVDCYKTSVAKKCNGCKNPITGFGHGTNVVNYEGHSWHEYCFNCK # KCSLSLANKRFVINEEDIYCPDCAKKV] # end gene g153 ### # # ----- sequence number 146 (length = 6200, name = scaffold_12_9665727-9671926) ----- # # annotation: # Sequence scaffold_12_9665727-9671926 length=6200 scaffold_12_9665727-9671926 database start_codon 601 603 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 680 1585 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 1645 1842 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 1897 2272 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 2379 3599 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 3712 4147 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 4242 5324 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database intron 5392 5535 . + . transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 601 679 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 1586 1644 . + 2 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 1843 1896 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 2273 2378 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 3600 3711 . + 2 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 4148 4241 . + 1 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 5325 5391 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database CDS 5536 5600 . + 2 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; scaffold_12_9665727-9671926 database stop_codon 5598 5600 . + 0 transcript_id "g_430-T1.1"; gene_id "g_430-T1"; # Predicted genes for sequence number 146 on both strands # start gene g154 scaffold_12_9665727-9671926 AUGUSTUS gene 601 5600 0.49 + . g154 scaffold_12_9665727-9671926 AUGUSTUS transcript 601 5600 0.49 + . g154.t1 scaffold_12_9665727-9671926 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 680 1585 0.91 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 1645 1842 0.97 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 1897 2272 0.98 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 2423 3005 0.68 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 3112 3599 0.99 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 3712 4147 0.99 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 4242 4343 0.8 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 4370 4699 0.8 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 4794 5324 1 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS intron 5392 5535 1 + . transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 601 679 0.91 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 1586 1644 0.92 + 2 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 1843 1896 0.97 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 2273 2422 0.67 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 3006 3111 1 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 3600 3711 0.99 + 2 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 4148 4241 0.99 + 1 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 4344 4369 0.8 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 4700 4793 0.8 + 1 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 5325 5391 1 + 0 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS CDS 5536 5600 1 + 2 transcript_id "g154.t1"; gene_id "g154"; scaffold_12_9665727-9671926 AUGUSTUS stop_codon 5598 5600 . + 0 transcript_id "g154.t1"; gene_id "g154"; # protein sequence = [MSTTTGGGEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF # RSLIPSYIRDSAAAVVVYDIASRYHVEASPPCPALDVRLQLWDTAGQERFRSLIPSYIRDSTIAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIML # VGNKTDLADKRQVSVEAAERKARELNVMYIETSAKAGYNVKQGDSFVLSRVQITTEEGEQRAKELNVMFIETSAKTGYNVKQLFRRVAAALPGMDSTP # EKSKEDMIDIKLEKPPEMAVTESSCSC] # end gene g154 ### # # ----- sequence number 147 (length = 6542, name = scaffold_12_10204923-10211464) ----- # # annotation: # Sequence scaffold_12_10204923-10211464 length=6542 scaffold_12_10204923-10211464 database start_codon 601 603 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 647 808 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 886 1080 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 1160 1296 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 1431 1596 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 1721 1893 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 1953 2402 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 2476 3179 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 3294 3462 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 3658 4693 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 4807 5474 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database intron 5535 5897 . + . transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 601 646 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 809 885 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 1081 1159 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 1297 1430 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 1597 1720 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 1894 1952 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 2403 2475 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 3180 3293 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 3463 3657 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 4694 4806 . + 2 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 5475 5534 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database CDS 5898 5942 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; scaffold_12_10204923-10211464 database stop_codon 5940 5942 . + 0 transcript_id "g_436-T1.1"; gene_id "g_436-T1"; # Predicted genes for sequence number 147 on both strands # start gene g155 scaffold_12_10204923-10211464 AUGUSTUS gene 601 6066 0.15 + . g155 scaffold_12_10204923-10211464 AUGUSTUS transcript 601 6066 0.15 + . g155.t1 scaffold_12_10204923-10211464 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 647 808 0.57 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 886 1080 0.63 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 1160 1296 0.88 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 1431 1596 1 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 1721 2358 0.84 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 2476 3179 0.93 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 3294 3462 1 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 3658 4126 0.93 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 4274 4693 0.77 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 4807 5474 0.99 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS intron 5567 5912 0.52 + . transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 601 646 0.64 + 0 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 809 885 0.62 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 1081 1159 0.63 + 0 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 1297 1430 1 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 1597 1720 1 + 0 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 2359 2475 0.97 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 3180 3293 0.93 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 3463 3657 0.99 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 4127 4273 0.72 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 4694 4806 1 + 2 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 5475 5566 0.83 + 0 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS CDS 5913 6066 0.58 + 1 transcript_id "g155.t1"; gene_id "g155"; scaffold_12_10204923-10211464 AUGUSTUS stop_codon 6064 6066 . + 0 transcript_id "g155.t1"; gene_id "g155"; # protein sequence = [MSSQSKKTKITSKLKVGKVGSKNKEDAPHELESQFILRLPTEYASTVRRIAQSGSMNLKDRLTVELHADGRHGIVRVD # RVPLACKLVDLPCILESLKTVDKKTFYKTADVCQMLVCTLDGDLYPPLEEPTGTTDPKNKKKDKDKDKKFVWNHGNSRAMAVNITLFLLQYIESPDVE # KEVKRLLSTDAEAVSVRWEVIAEDETKEADNHGTLANLDSSPGTSGHKMGHGSSAQRDELREIFNDISSSSEDEEDEGDRHEDEDLNIMDTEDDLVRQ # LQDKLNESDGARDESDRNNQIGAVAVLFWLNQLYSSPLDSYMHLSITQRGCLSRSPGSSGRFNGLESGRVVMEYQVQINSVKAKLQDTRARKKQQEDL # IMKVENQALKNRFQALLNEIILQEEGELEQVRRWEGLCLGRSSWTPSSRSNHQGAATCQAAEDRIPAGGEEASAASEGALSDRFEDFISSC] # end gene g155 ### # # ----- sequence number 148 (length = 3073, name = scaffold_12_10582143-10585215) ----- # # annotation: # Sequence scaffold_12_10582143-10585215 length=3073 scaffold_12_10582143-10585215 database start_codon 601 603 . + 0 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 960 1044 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 1126 1253 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 1319 1434 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 1531 1636 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 1674 1768 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 1955 2051 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database intron 2202 2298 . + . transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 601 959 . + 0 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 1045 1125 . + 1 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 1254 1318 . + 1 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 1435 1530 . + 2 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 1637 1673 . + 2 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 1769 1954 . + 1 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 2052 2201 . + 1 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database CDS 2299 2473 . + 1 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; scaffold_12_10582143-10585215 database stop_codon 2471 2473 . + 0 transcript_id "g_441-T1.1"; gene_id "g_441-T1"; # Predicted genes for sequence number 148 on both strands # start gene g156 scaffold_12_10582143-10585215 AUGUSTUS gene 887 2473 0.22 + . g156 scaffold_12_10582143-10585215 AUGUSTUS transcript 887 2473 0.22 + . g156.t1 scaffold_12_10582143-10585215 AUGUSTUS start_codon 887 889 . + 0 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS intron 960 1434 0.48 + . transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS intron 1531 1636 0.98 + . transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS intron 1674 1768 1 + . transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS intron 1955 2051 1 + . transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS intron 2202 2298 1 + . transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 887 959 0.23 + 0 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 1435 1530 0.99 + 2 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 1637 1673 0.99 + 2 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 1769 1954 1 + 1 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 2052 2201 1 + 1 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS CDS 2299 2473 1 + 1 transcript_id "g156.t1"; gene_id "g156"; scaffold_12_10582143-10585215 AUGUSTUS stop_codon 2471 2473 . + 0 transcript_id "g156.t1"; gene_id "g156"; # protein sequence = [MVPGMSTTISGMMLNAKDKRHSTRDDKKKKKKKKKKSKKKKNRKHSEDSESDSDSDEEVKKRKKKKSKKKKSKKKKAK # KNRKQSSDSSSEQSEEEEDATEELWVERTCTDEHIVGPEAPLTHLSQDDKPLDFGHALLPGEGAAMAEYVKAGKRIPRRGEIGLTSDEIATFEKSGFV # MSGSRHRRMEAVRLRKENQIYSADEKRALASFNQEERRKRESKILSSFREMVYRKTKGKDDK] # end gene g156 ### # # ----- sequence number 149 (length = 8636, name = scaffold_12_10596789-10605424) ----- # # annotation: # Sequence scaffold_12_10596789-10605424 length=8636 scaffold_12_10596789-10605424 database start_codon 601 603 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 665 2226 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 2423 3487 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 3675 5154 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 5317 6119 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 6217 7084 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 7254 7588 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database intron 7722 7841 . + . transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 601 664 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 2227 2422 . + 2 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 3488 3674 . + 1 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 5155 5316 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 6120 6216 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 7085 7253 . + 2 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 7589 7721 . + 1 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database CDS 7842 8036 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; scaffold_12_10596789-10605424 database stop_codon 8034 8036 . + 0 transcript_id "g_443-T1.1"; gene_id "g_443-T1"; # Predicted genes for sequence number 149 on both strands # start gene g157 scaffold_12_10596789-10605424 AUGUSTUS gene 1 8036 0.64 + . g157 scaffold_12_10596789-10605424 AUGUSTUS transcript 1 8036 0.64 + . g157.t1 scaffold_12_10596789-10605424 AUGUSTUS intron 1 549 0.83 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 665 2226 0.99 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 2423 3487 1 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 3675 5154 0.93 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 5317 6119 1 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 6217 7084 1 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 7254 7588 1 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS intron 7722 7841 1 + . transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 550 664 0.91 + 0 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 2227 2422 0.99 + 2 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 3488 3674 1 + 1 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 5155 5316 1 + 0 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 6120 6216 1 + 0 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 7085 7253 1 + 2 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 7589 7721 1 + 1 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS CDS 7842 8036 0.87 + 0 transcript_id "g157.t1"; gene_id "g157"; scaffold_12_10596789-10605424 AUGUSTUS stop_codon 8034 8036 . + 0 transcript_id "g157.t1"; gene_id "g157"; # protein sequence = [GEGARAVPLAGHVGFDSMPDQLVNKSVNHGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPTQHNQPGVQLKSNTYEL # QESNVRLKLTMVNTVGFGDQINKEDSYKSIVEFIDAQFEAYLQEELKIKRTLHSYHDTRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKS # DAISKSELTKFKIKITSELVSNGVQIYQFPTDDETVAEINSTMNGHLPFAVVGSTEEVKIGNKMVKARQYPWGTVQVENENHCDFVKLREMLIRVNME # DLREQTHTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFMGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHDKFDRLKKLHQDEKKKL # EDKKKSLDDELNMFKQKKTAAELLQNQAQQAGGSTTLKRDKERKK] # end gene g157 ### # # ----- sequence number 150 (length = 9159, name = scaffold_12_12441912-12451070) ----- # # annotation: # Sequence scaffold_12_12441912-12451070 length=9159 scaffold_12_12441912-12451070 database start_codon 601 603 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 749 1451 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 1602 1894 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 1978 2329 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 2390 3084 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 3304 3710 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 3806 4308 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 4454 4733 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 4827 4921 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 4988 6009 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 6142 6556 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 6686 6795 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 6931 7066 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 7193 7303 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 7388 7771 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 7901 8223 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database intron 8309 8494 . + . transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 601 748 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 1452 1601 . + 2 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 1895 1977 . + 2 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 2330 2389 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 3085 3303 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 3711 3805 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 4309 4453 . + 1 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 4734 4826 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 4922 4987 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 6010 6141 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 6557 6685 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 6796 6930 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 7067 7192 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 7304 7387 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 7772 7900 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 8224 8308 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database CDS 8495 8559 . + 2 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; scaffold_12_12441912-12451070 database stop_codon 8557 8559 . + 0 transcript_id "g_450-T1.1"; gene_id "g_450-T1"; # Predicted genes for sequence number 150 on both strands # start gene g158 scaffold_12_12441912-12451070 AUGUSTUS gene 1 8559 0.25 + . g158 scaffold_12_12441912-12451070 AUGUSTUS transcript 1 8559 0.25 + . g158.t1 scaffold_12_12441912-12451070 AUGUSTUS intron 1 564 0.5 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 749 1451 0.94 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 1602 1894 0.98 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 1978 2329 0.99 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 2390 3084 0.99 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 3304 3710 1 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 3806 4308 0.93 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 4454 4733 0.98 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 4827 4921 1 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 4988 6009 0.85 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 6142 6556 1 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 6686 6795 0.86 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 6931 7066 1 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 7193 7303 0.97 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 7388 7771 0.83 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 7901 8223 1 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS intron 8309 8494 0.99 + . transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 565 748 0.54 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 1452 1601 1 + 2 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 1895 1977 0.98 + 2 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 2330 2389 0.99 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 3085 3303 1 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 3711 3805 1 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 4309 4453 0.99 + 1 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 4734 4826 0.99 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 4922 4987 1 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 6010 6141 0.86 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 6557 6685 0.99 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 6796 6930 0.87 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 7067 7192 0.99 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 7304 7387 0.98 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 7772 7900 0.83 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 8224 8308 1 + 0 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS CDS 8495 8559 0.99 + 2 transcript_id "g158.t1"; gene_id "g158"; scaffold_12_12441912-12451070 AUGUSTUS stop_codon 8557 8559 . + 0 transcript_id "g158.t1"; gene_id "g158"; # protein sequence = [FRAPCLVSEAVAMEGKGPYRIYDPGGGEAKAREEAGGGSSYRQLLEENSVLRERMKGLKSLGDLLEESQSEASRLRQR # VEELVRDNEALKSSTSSYATSLCMGGPIQTETQAQGNTVGSDQRESQASQAGKALQPEPACEGLSEFELVNMEEKAPDQQALQTGAAAGAGAVHIPQE # NMELASQLQRLESSFSVFAEESNPNQLLAHLGRMAVEFHHLSSKVQKNEQRTSLLQTLCEQLRQENNELRKKMEEDLQYRNRDLEHLRQENQKLKELV # TGEGAAPVEGQPAEAKEEPAKEETPCVRSKMEVSTPQKTGKAGEKTPTKPCDPEVYEKKIKLLEKQRKDVLEVNKQWDIQWNSMKSQFEQKITDLRQR # LADSQKAVLELEAEREQRQRDYDKKLLLAKSKIENVQGEKECLNSETAELKQKVRYLQDQLLPLSKQREYQEKEIQRLNRALEEALNLHPPSSSQQPP # GQGNHGDGASNLRKQELLTQIAVLKEQVKIFEEDFRKERSDRERMNEEKEDLRRQVERLQGQMTNLTNQLHQAQNECQRERTERCKLERLQMQHHKQV # GPQGLEGWPVHFPPRAPNAAGAAAAAAAAAPPPGRDFQPVTPAFPWQSSFPQPRGPRGAGEGSRPPPENADQSTTAGFGKRERQNIDPGKH] # end gene g158 ### # # ----- sequence number 151 (length = 6343, name = scaffold_12_12456036-12462378) ----- # # annotation: # Sequence scaffold_12_12456036-12462378 length=6343 scaffold_12_12456036-12462378 database start_codon 601 603 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 736 1405 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 1477 1604 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 1784 1912 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 1957 2151 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 2260 3501 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 3576 3780 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 3894 4419 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 4530 4629 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 4704 4833 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 4889 4998 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 5107 5207 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database intron 5306 5523 . + . transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 601 735 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 1406 1476 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 1605 1783 . + 1 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 1913 1956 . + 2 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 2152 2259 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 3502 3575 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 3781 3893 . + 1 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 4420 4529 . + 2 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 4630 4703 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 4834 4888 . + 1 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 4999 5106 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 5208 5305 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database CDS 5524 5743 . + 1 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; scaffold_12_12456036-12462378 database stop_codon 5741 5743 . + 0 transcript_id "g_451-T1.1"; gene_id "g_451-T1"; # Predicted genes for sequence number 151 on both strands # start gene g159 scaffold_12_12456036-12462378 AUGUSTUS gene 1442 5743 0.29 + . g159 scaffold_12_12456036-12462378 AUGUSTUS transcript 1442 5743 0.29 + . g159.t1 scaffold_12_12456036-12462378 AUGUSTUS start_codon 1442 1444 . + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 1477 1604 0.99 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 1784 1912 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 1957 2151 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 2260 3501 0.59 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 3576 3780 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 3894 4419 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 4530 4629 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 4704 4833 0.82 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 4904 4998 0.61 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 5107 5207 1 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS intron 5306 5523 0.98 + . transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 1442 1476 0.86 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 1605 1783 1 + 1 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 1913 1956 1 + 2 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 2152 2259 1 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 3502 3575 0.97 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 3781 3893 1 + 1 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 4420 4529 1 + 2 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 4630 4703 0.82 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 4834 4903 0.61 + 1 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 4999 5106 1 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 5208 5305 1 + 0 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS CDS 5524 5743 0.98 + 1 transcript_id "g159.t1"; gene_id "g159"; scaffold_12_12456036-12462378 AUGUSTUS stop_codon 5741 5743 . + 0 transcript_id "g159.t1"; gene_id "g159"; # protein sequence = [MPSAEAKLKKNRCANCFDCPCCMHTLSTRATNIPAPLPDDPTKTAMKKAYYLACGFCRWTSRDVGMADKSVASGGWQE # PENTHSQRINKLIEYYQQLAQREKLERDRKKLARRRPFMPLAFSEKYGLGTRLQRQRPGAPISSLAGLSLKEGEDQKEISIEPAQALEEVEPLPEDCY # TRPINLPEVTTLRQRLLQPDFQPAGASQLHPKHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVSYIPEVRIMSIPNLRYMKVSVVKECQVL # LTLTNPVENITHVTLVGCEEGDQDDINTTAKVSVPTKELVLAGKDAAAEYDELAEPQDFQDDPDVVAFRKSNKIGFFIKVVPQRESDADVTVSFKIRH # DFRNLAAPIRPSEEGVEAPAEAIWLTHHVELSLGPLVP] # end gene g159 ### # # ----- sequence number 152 (length = 4330, name = scaffold_12_14981605-14985934) ----- # # annotation: # Sequence scaffold_12_14981605-14985934 length=4330 scaffold_12_14981605-14985934 database start_codon 601 603 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 650 802 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 946 1382 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 1516 1696 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 1970 2345 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 2643 2827 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 2983 3115 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 3278 3413 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database intron 3450 3544 . + . transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 601 649 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 803 945 . + 2 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 1383 1515 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 1697 1969 . + 2 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 2346 2642 . + 2 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 2828 2982 . + 2 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 3116 3277 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 3414 3449 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database CDS 3545 3730 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; scaffold_12_14981605-14985934 database stop_codon 3728 3730 . + 0 transcript_id "g_460-T1.1"; gene_id "g_460-T1"; # Predicted genes for sequence number 152 on both strands # start gene g160 scaffold_12_14981605-14985934 AUGUSTUS gene 1467 3730 0.57 + . g160 scaffold_12_14981605-14985934 AUGUSTUS transcript 1467 3730 0.57 + . g160.t1 scaffold_12_14981605-14985934 AUGUSTUS start_codon 1467 1469 . + 0 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 1516 1696 0.99 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 1970 2345 0.98 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 2643 2827 0.65 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 2983 3115 0.96 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 3278 3413 0.97 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS intron 3450 3544 0.95 + . transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 1467 1515 0.97 + 0 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 1697 1969 0.97 + 2 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 2346 2642 0.65 + 2 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 2828 2982 0.92 + 2 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 3116 3277 1 + 0 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 3414 3449 0.97 + 0 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS CDS 3545 3730 0.98 + 0 transcript_id "g160.t1"; gene_id "g160"; scaffold_12_14981605-14985934 AUGUSTUS stop_codon 3728 3730 . + 0 transcript_id "g160.t1"; gene_id "g160"; # protein sequence = [MPDGGRLIEILRLEVIECSSKVVLTYGSSFSQSVVSEASTLDFLTLGSSSKPAVLWNKFDEQAGIDGMGQMRGSTWLV # THVTQKHQGHYTFRKQNGRFLSRRKLEVKENFEGYTKESGEDLIVHSVLNSEESCYLELFLDEEPDPITLIRNGGVVPDEYISDRVEILGRRSHFTFK # IGLLEERDSGRLELRDQNSNLALVIRLKVKPHNPWMSYVSVGGSVIALVCFCCCVRKCCCKKNSSKRNNSASETGQAALHPAETRHMTSQPPGPSHPS # PPYFQQCVRKPAVTIPPAAPSGPMFSYQPTPPPPPNPSSINETTHNEDPQVQVATSTGVDPPSFHLNFCLSSESETQYELPQKLNFRTALVPIAGASS # SAEVYSSDKLNFK] # end gene g160 ### # # ----- sequence number 153 (length = 11283, name = scaffold_12_15692440-15703722) ----- # # annotation: # Sequence scaffold_12_15692440-15703722 length=11283 scaffold_12_15692440-15703722 database start_codon 601 603 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 808 1024 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 1195 1538 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 1610 1693 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 1809 1882 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 1983 2197 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 2272 2348 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 2446 2523 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 2658 2824 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 2973 3068 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 3163 3333 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 3414 3691 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 3771 4914 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 4970 5151 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 5298 5600 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 5663 5781 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 5915 6151 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 6283 6382 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 6521 6948 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 7137 7330 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 7480 7590 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 7710 7796 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 7917 8114 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 8181 8603 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 8761 8905 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 9018 9153 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 9243 9492 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 9627 10288 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database intron 10457 10638 . + . transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 601 807 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 1025 1194 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 1539 1609 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 1694 1808 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 1883 1982 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 2198 2271 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 2349 2445 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 2524 2657 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 2825 2972 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 3069 3162 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 3334 3413 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 3692 3770 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 4915 4969 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 5152 5297 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 5601 5662 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 5782 5914 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 6152 6282 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 6383 6520 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 6949 7136 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 7331 7479 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 7591 7709 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 7797 7916 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 8115 8180 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 8604 8760 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 8906 9017 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 9154 9242 . + 1 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 9493 9626 . + 2 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 10289 10456 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database CDS 10639 10683 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; scaffold_12_15692440-15703722 database stop_codon 10681 10683 . + 0 transcript_id "g_466-T1.1"; gene_id "g_466-T1"; # Predicted genes for sequence number 153 on both strands # start gene g161 scaffold_12_15692440-15703722 AUGUSTUS gene 601 10683 0.78 + . g161 scaffold_12_15692440-15703722 AUGUSTUS transcript 601 10683 0.78 + . g161.t1 scaffold_12_15692440-15703722 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 808 1024 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 1195 1538 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 1610 1693 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 1809 1882 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 1983 2197 0.98 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 2272 2348 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 2446 2523 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 2658 2824 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 2973 3068 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 3163 3333 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 3414 3691 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 3771 4914 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 4970 5151 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 5298 5600 0.96 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 5663 5781 0.94 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 5915 6151 0.99 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 6283 6382 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 6521 6948 0.99 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 7137 7330 0.93 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 7513 7590 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 7710 7796 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 7917 8114 0.97 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 8181 8603 0.97 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 8761 8905 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 9018 9153 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 9243 9492 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 9627 10288 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS intron 10457 10638 1 + . transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 601 807 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 1025 1194 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 1539 1609 1 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 1694 1808 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 1883 1982 0.99 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 2198 2271 0.99 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 2349 2445 1 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 2524 2657 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 2825 2972 1 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 3069 3162 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 3334 3413 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 3692 3770 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 4915 4969 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 5152 5297 1 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 5601 5662 0.9 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 5782 5914 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 6152 6282 0.99 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 6383 6520 0.99 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 6949 7136 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 7331 7512 0.93 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 7591 7709 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 7797 7916 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 8115 8180 0.97 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 8604 8760 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 8906 9017 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 9154 9242 1 + 1 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 9493 9626 1 + 2 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 10289 10456 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS CDS 10639 10683 1 + 0 transcript_id "g161.t1"; gene_id "g161"; scaffold_12_15692440-15703722 AUGUSTUS stop_codon 10681 10683 . + 0 transcript_id "g161.t1"; gene_id "g161"; # protein sequence = [MISPTQWDLPPELCCRPMAFVALTGLDVVYNAVHRAIWDAFCANRRADRVPISFKVLPGDHEYPKCRTKRTSYEWYIP # KGVLKTGWMNKHLNLVPALVVLFYELDWDEPQWKEKQSECATRVEIVRTSLQGRNTKVAVVLIQKKTPLPPGEDLVASERAAALCNACDLSGKSLFVL # PHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDTQNALKYYRTAYSLVHELRAHETNMLEIKTMAGF # INYKICRLCFQHNTPLDAIAQFRKHIDLSKKKIGSSELAFEHTAWMSKQFQSFGDLFDEAIKLGLTAIQTQNPGFYYQQAACYAQERKSQAGQLCSYP # ASVSFPTPDPLDTPSGALDFYGQRAWRQGHQSIDPPDAEKEKGGILALQLKEREVLHSELIIALLSNAVAQFKKYKCPRMKSHLMVQMGEEYFNAKDY # TKALKLLDYVMCDYRTERWWALLTSILSTALCCSYLMAHVKDYITYSMELLGRASTLKEEQKSRIEKNLIRVLMNEVPEAEPDCEEAGTKAAQALWSD # RVALAGSNHYTIEVQDYVPFVQCKSRFLSPSFHLDEPVQVQVFLRADCPHPVRFAKLCVSLSNQEYSRFCVVQESSEPSSQESLCLLPGKIRPFCFSF # GANTEDVGKKVEITAVDLMLGSESGRCVFLNWRGGGGDAASTQEALQVSRSFKRRARAPDQQTDWDSVTIQASTMIISRVPRISVQLSHQPPALNNEM # YLITVSIQSHEDTVARDAKLTAGLKPGKAAFRQTGFYCQDANLTQSTHVTLTGSESCDDLPALLPDIHIGDLQPGQTVEKRVFVRCVSTGPRVFLFHV # AYCISTSLEGHSITCRCHKDETVTIETIVPFEVAVKFVSTKFEPLDRVYVDVPFLLMTDILSASPWPLLMESSQLQLAPTLTPLDQHQSQVEQVVLQT # GECASECFCLQCPPLANGSSSVASGHYLISWKRSSSTEASVVQTSIALPHVQTETIPLYVHADLPSFGRVRESLPVRYHIENRTGLVQDVEITVEPSD # AFMFSGLKQVRVRILPGARQEMLYNFYPLMAGYQTLPLLNISLLRFPSPANQLLRRFLPSRIFVKPQGRPVDDTSIAAA] # end gene g161 ### # # ----- sequence number 154 (length = 3081, name = scaffold_13_2635211-2638291) ----- # # annotation: # Sequence scaffold_13_2635211-2638291 length=3081 scaffold_13_2635211-2638291 database start_codon 601 603 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database intron 964 1563 . + . transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database intron 1726 1951 . + . transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database intron 2033 2298 . + . transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database CDS 601 963 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database CDS 1564 1725 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database CDS 1952 2032 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database CDS 2299 2481 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; scaffold_13_2635211-2638291 database stop_codon 2479 2481 . + 0 transcript_id "g_490-T1.1"; gene_id "g_490-T1"; # Predicted genes for sequence number 154 on both strands # start gene g162 scaffold_13_2635211-2638291 AUGUSTUS gene 601 2481 0.97 + . g162 scaffold_13_2635211-2638291 AUGUSTUS transcript 601 2481 0.97 + . g162.t1 scaffold_13_2635211-2638291 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS intron 964 1563 1 + . transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS intron 1726 1951 0.99 + . transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS intron 2033 2298 1 + . transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS CDS 601 963 0.98 + 0 transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS CDS 1564 1725 0.99 + 0 transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS CDS 1952 2032 1 + 0 transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS CDS 2299 2481 1 + 0 transcript_id "g162.t1"; gene_id "g162"; scaffold_13_2635211-2638291 AUGUSTUS stop_codon 2479 2481 . + 0 transcript_id "g162.t1"; gene_id "g162"; # protein sequence = [MREFKSKAFWRAVLAELVGMTLFIYLSISTAIGNPKDTHPHQEVKVSLAFGLAIATLAQSLGHISGAHLNPAVTLGML # ASCQISVFKAVMYIVAQMLGSALASGIVFGTRPESTDVLGVNALNGVTPGQGVGIELLATFQLVLCVIAVTDKRRRDVTGSAPLAIGLSVCLGHLAAI # SYTGCGINPARSFGPALIMNKFKDHWVYWVGPMCGGVAAALMYDFILYPKFDDFPERIKVLVSGPVGDYDVNGGDDTTAVEMSPTK] # end gene g162 ### # # ----- sequence number 155 (length = 3719, name = scaffold_13_3720354-3724072) ----- # # annotation: # Sequence scaffold_13_3720354-3724072 length=3719 scaffold_13_3720354-3724072 database start_codon 601 603 . + 0 transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database intron 730 1905 . + . transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database intron 2096 3021 . + . transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database CDS 601 729 . + 0 transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database CDS 1906 2095 . + 0 transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database CDS 3022 3119 . + 2 transcript_id "g_507-T1.1"; gene_id "g_507-T1"; scaffold_13_3720354-3724072 database stop_codon 3117 3119 . + 0 transcript_id "g_507-T1.1"; gene_id "g_507-T1"; # Predicted genes for sequence number 155 on both strands # start gene g163 scaffold_13_3720354-3724072 AUGUSTUS gene 601 3119 0.56 + . g163 scaffold_13_3720354-3724072 AUGUSTUS transcript 601 3119 0.56 + . g163.t1 scaffold_13_3720354-3724072 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS intron 730 1905 0.99 + . transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS intron 2096 3021 0.58 + . transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS CDS 601 729 0.97 + 0 transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS CDS 1906 2095 0.98 + 0 transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS CDS 3022 3119 0.59 + 2 transcript_id "g163.t1"; gene_id "g163"; scaffold_13_3720354-3724072 AUGUSTUS stop_codon 3117 3119 . + 0 transcript_id "g163.t1"; gene_id "g163"; # protein sequence = [MSWQNFVDTLLADGSCQDSAIVGYKDSKYVWAAQPGGAFLNITSQEIDVLVGADRQSFFTNGLSLGNAKCSVIRDSMH # IDNDWTMDIRTKSTGGPTYNISVGKAFTVLVLVMGKEGVHGGGLNTKAYSMAKYLRDSGF] # end gene g163 ### # # ----- sequence number 156 (length = 4091, name = scaffold_13_3745438-3749528) ----- # # annotation: # Sequence scaffold_13_3745438-3749528 length=4091 scaffold_13_3745438-3749528 database start_codon 601 603 . + 0 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 637 812 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 961 1260 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 1391 1564 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 1661 2107 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 2215 2366 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 2473 2642 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database intron 2732 2871 . + . transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 601 636 . + 0 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 813 960 . + 0 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 1261 1390 . + 2 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 1565 1660 . + 1 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 2108 2214 . + 1 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 2367 2472 . + 2 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 2643 2731 . + 1 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database CDS 2872 3491 . + 2 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; scaffold_13_3745438-3749528 database stop_codon 3489 3491 . + 0 transcript_id "g_509-T1.1"; gene_id "g_509-T1"; # Predicted genes for sequence number 156 on both strands # start gene g164 scaffold_13_3745438-3749528 AUGUSTUS gene 1 3491 0.33 + . g164 scaffold_13_3745438-3749528 AUGUSTUS transcript 1 3491 0.33 + . g164.t1 scaffold_13_3745438-3749528 AUGUSTUS intron 1 162 0.98 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 371 566 0.99 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 637 812 0.93 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 961 1260 1 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 1391 1564 0.4 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 1661 2107 0.54 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 2215 2366 1 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 2473 2642 1 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS intron 2732 2871 0.98 + . transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 163 370 0.98 + 2 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 567 636 0.92 + 1 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 813 960 1 + 0 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 1261 1390 1 + 2 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 1565 1660 0.4 + 1 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 2108 2214 1 + 1 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 2367 2472 1 + 2 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 2643 2731 1 + 1 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS CDS 2872 3491 0.98 + 2 transcript_id "g164.t1"; gene_id "g164"; scaffold_13_3745438-3749528 AUGUSTUS stop_codon 3489 3491 . + 0 transcript_id "g164.t1"; gene_id "g164"; # protein sequence = [KYESHTRVHTGEKPFQCDVCLQCYSTKSNLTVHKKKHDNNAPFQRKEHKCPFCSKLHASRKTLSKHVRRFHPDHIQEF # IIMRKRKSEGWKCDICHKSFTRRPHLEEHMILHSQDRPFKCSFCDDYFKSRFARLKHQEKYHLGPFPCDICGRQFNDTGNRKRHIECTHGGKRKWTCF # ICGKSVRERTTLREHLRIHSGEKPHLCSICGQSFRHGSSYRLHLRVHHDDKRYECDECGKTFIRHDHLTKHQKIHSGEKAHQCEECGKCFRRHDHLTV # HYKSVHLGEKVWQKYKMAVHQCEVCKKEFKGKSSLEMHFRTHSGEKPHKCPVCHQTFRIKKTLTKHMVTHSDARPFNCPHCSATFKRKDKLKYHMDHV # HSTKFSEQPLTGTNEDKMAVLPYDEPPKVFPEEPKAVFQSAAADLRVPVTLVPVHMSDVQGQGDLARHGTNISAQPPHGELTSPQAQITRYQAATDLA # FLEKYTLTPQPANIVHPVRPDQMLDPRESYLGTLLGLDSTPTVQNISNSDHPH] # end gene g164 ### # # ----- sequence number 157 (length = 3959, name = scaffold_13_4653128-4657086) ----- # # annotation: # Sequence scaffold_13_4653128-4657086 length=3959 scaffold_13_4653128-4657086 database start_codon 601 603 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 733 848 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 957 1451 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 1577 1748 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 1846 2246 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 2382 2532 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 2720 2828 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database intron 2975 3227 . + . transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 601 732 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 849 956 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 1452 1576 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 1749 1845 . + 1 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 2247 2381 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 2533 2719 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 2829 2974 . + 2 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database CDS 3228 3359 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; scaffold_13_4653128-4657086 database stop_codon 3357 3359 . + 0 transcript_id "g_524-T1.1"; gene_id "g_524-T1"; # Predicted genes for sequence number 157 on both strands # start gene g165 scaffold_13_4653128-4657086 AUGUSTUS gene 1 3359 0.87 + . g165 scaffold_13_4653128-4657086 AUGUSTUS transcript 1 3359 0.87 + . g165.t1 scaffold_13_4653128-4657086 AUGUSTUS intron 1 112 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 290 561 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 733 848 0.94 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 957 1451 0.95 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 1577 1748 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 1846 2246 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 2382 2532 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 2720 2828 1 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS intron 2975 3227 0.98 + . transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 113 289 1 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 562 732 0.94 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 849 956 0.95 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 1452 1576 1 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 1749 1845 1 + 1 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 2247 2381 1 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 2533 2719 1 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 2829 2974 0.98 + 2 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS CDS 3228 3359 1 + 0 transcript_id "g165.t1"; gene_id "g165"; scaffold_13_4653128-4657086 AUGUSTUS stop_codon 3357 3359 . + 0 transcript_id "g165.t1"; gene_id "g165"; # protein sequence = [GLLDLKTRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNSRSPEYLSLFIDDKLKKGVKGLTEQEVESILDKAMVLFRF # MQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEGMFRDMSISNTTMDEFRQHLQSTGVSLGGVDLTVRVLTTGYWPTQSAT # PKCTIPPSPRHAFEVFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPIKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKSTFEEIQ # QETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHVFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRK # KMQHNVLVAEVTQQLRARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA] # end gene g165 ### # # ----- sequence number 158 (length = 4323, name = scaffold_13_5499187-5503509) ----- # # annotation: # Sequence scaffold_13_5499187-5503509 length=4323 scaffold_13_5499187-5503509 database start_codon 601 603 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 670 925 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 1071 1180 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 1331 1454 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 1543 1639 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 1722 1860 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 1935 2016 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 2112 2207 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 2279 2374 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 2483 2578 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 2648 2847 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 2899 3012 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 3106 3223 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database intron 3427 3593 . + . transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 601 669 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 926 1070 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 1181 1330 . + 2 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 1455 1542 . + 2 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 1640 1721 . + 1 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 1861 1934 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 2017 2111 . + 1 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 2208 2278 . + 2 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 2375 2482 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 2579 2647 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 2848 2898 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 3013 3105 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 3224 3426 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database CDS 3594 3723 . + 1 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; scaffold_13_5499187-5503509 database stop_codon 3721 3723 . + 0 transcript_id "g_531-T1.1"; gene_id "g_531-T1"; # Predicted genes for sequence number 158 on both strands # start gene g166 scaffold_13_5499187-5503509 AUGUSTUS gene 661 3723 0.22 + . g166 scaffold_13_5499187-5503509 AUGUSTUS transcript 661 3723 0.22 + . g166.t1 scaffold_13_5499187-5503509 AUGUSTUS start_codon 661 663 . + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 670 925 0.64 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 1071 1180 1 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 1331 1454 1 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 1543 1639 1 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 1722 1860 0.83 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 1935 2016 0.8 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 2112 2207 0.8 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 2279 2374 0.79 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 2483 2578 0.98 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 2648 3012 0.9 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 3106 3223 0.78 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS intron 3427 3593 1 + . transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 661 669 0.44 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 926 1070 0.99 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 1181 1330 1 + 2 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 1455 1542 1 + 2 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 1640 1721 1 + 1 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 1861 1934 0.83 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 2017 2111 0.8 + 1 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 2208 2278 0.8 + 2 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 2375 2482 0.79 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 2579 2647 0.98 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 3013 3105 1 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 3224 3426 0.78 + 0 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS CDS 3594 3723 1 + 1 transcript_id "g166.t1"; gene_id "g166"; scaffold_13_5499187-5503509 AUGUSTUS stop_codon 3721 3723 . + 0 transcript_id "g166.t1"; gene_id "g166"; # protein sequence = [MYRGLCSAVAQHQSQADFLQGAPHRKHPGVNNLKTLSMPKELQMAAQAVINDSEVTGLIDRARSLTNFLWSRKRAPED # AFLRERAMSLEKALWMKAHEKGTVVDSDVLGTQIRKQVLSELRKTTYRWRQMSYDKELSVIYMAARLAGGYAALRRALNEIKKRDSSFSPFSLLDFGS # GLGTAVWASHSYWGDSLKEMVCVDSSGPMNTLAERLLREGSERDEPCIKQVYFRQFLPVSPKVQFDLVVSAFSLSELACQTEREETLFTLWRKTSSYL # VLVENGTKEGHQMLMDARNTLLKCPHELPCPKLAQRLPTPCNFTQLYRPLQLPGVPDQQTEKFSYLILSRTDPAATQGRVEGVRWARLTAPVLRRPRH # VHCQMCSPSGELQRLVVTSHRHGRDVYRCARNSDWGDRLPIIQSEVDTTEDVEGLANGSVNTIQTE] # end gene g166 ### # # ----- sequence number 159 (length = 8475, name = scaffold_13_6289313-6297787) ----- # # annotation: # Sequence scaffold_13_6289313-6297787 length=8475 scaffold_13_6289313-6297787 database start_codon 601 603 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 646 1283 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 1355 1485 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 1574 2228 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 2382 5159 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 5325 6082 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 6145 6605 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 6718 7017 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 7118 7230 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database intron 7337 7721 . + . transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 601 645 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 1284 1354 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 1486 1573 . + 1 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 2229 2381 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 5160 5324 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 6083 6144 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 6606 6717 . + 1 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 7018 7117 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 7231 7336 . + 2 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database CDS 7722 7875 . + 1 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; scaffold_13_6289313-6297787 database stop_codon 7873 7875 . + 0 transcript_id "g_538-T1.1"; gene_id "g_538-T1"; # Predicted genes for sequence number 159 on both strands # start gene g167 scaffold_13_6289313-6297787 AUGUSTUS gene 1 7875 0.32 + . g167 scaffold_13_6289313-6297787 AUGUSTUS transcript 1 7875 0.32 + . g167.t1 scaffold_13_6289313-6297787 AUGUSTUS intron 1 498 0.95 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 646 1283 0.78 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 1355 2137 0.85 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 2410 3515 0.8 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 3590 4007 0.83 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 4161 5159 0.99 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 5325 6082 0.54 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 6145 6605 0.99 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 6718 7017 0.97 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 7118 7230 0.99 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS intron 7337 7721 1 + . transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 499 645 1 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 1284 1354 0.78 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 2138 2409 0.73 + 1 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 3516 3589 0.8 + 2 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 4008 4160 1 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 5160 5324 0.99 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 6083 6144 0.57 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 6606 6717 0.99 + 1 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 7018 7117 0.97 + 0 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 7231 7336 0.99 + 2 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS CDS 7722 7875 1 + 1 transcript_id "g167.t1"; gene_id "g167"; scaffold_13_6289313-6297787 AUGUSTUS stop_codon 7873 7875 . + 0 transcript_id "g167.t1"; gene_id "g167"; # protein sequence = [STFNVAVLNVGAPAAGMNAAVRSAVRVGITEGHKMFAVNDGFEGFCKGQIKEIKWGDVGGWTGQGGSILGTKRPGSLT # LAPPTLSMSFIFDGPPSKDWALPLQAYLGLMELSAAREKYNEFCVPMVMVPATVSNNIPGSDLSIGADTALNAITDVSLAGTHSVAPCEVSQRCAAST # PLLLSPSECLCHAFECLLQLYEARASHEEFCIPMCMLPATISNNVPGTDLSIGADTSLNAIVETCDRIKQSASGTKRRVFIIETMGGYCGYLASVGGL # AAGADAVYIYEEPFDIRDLQSNVEHLTEKMKTSIQRGLVLRNENCNENFTTDFIYQLYSEEGRGVFDCRKNVLGHMQQGGAPSPFDRNFGTKIAAKAI # QWISRKLKESCKEGKVFANTEDTACLLGMRRRAMVFQPVVQLKDETDFVHRIPKEQWWLKLRPLMKILAKYKTSYDVSDSGQLEHVTRVRPKESDTSA # I] # end gene g167 ### # # ----- sequence number 160 (length = 2266, name = scaffold_13_7310264-7312529) ----- # # annotation: # Sequence scaffold_13_7310264-7312529 length=2266 scaffold_13_7310264-7312529 database start_codon 601 603 . + 0 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database intron 659 847 . + . transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database intron 969 1093 . + . transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database intron 1225 1333 . + . transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database intron 1402 1519 . + . transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database CDS 601 658 . + 0 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database CDS 848 968 . + 2 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database CDS 1094 1224 . + 1 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database CDS 1334 1401 . + 2 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database CDS 1520 1666 . + 0 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; scaffold_13_7310264-7312529 database stop_codon 1664 1666 . + 0 transcript_id "g_554-T1.1"; gene_id "g_554-T1"; # Predicted genes for sequence number 160 on both strands # start gene g168 scaffold_13_7310264-7312529 AUGUSTUS gene 1 1666 0.62 + . g168 scaffold_13_7310264-7312529 AUGUSTUS transcript 1 1666 0.62 + . g168.t1 scaffold_13_7310264-7312529 AUGUSTUS intron 1 83 0.62 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS intron 158 599 0.62 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS intron 659 847 1 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS intron 969 1093 1 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS intron 1225 1333 1 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS intron 1402 1519 1 + . transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 84 157 0.62 + 0 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 600 658 0.99 + 1 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 848 968 1 + 2 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 1094 1224 1 + 1 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 1334 1401 1 + 2 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS CDS 1520 1666 1 + 0 transcript_id "g168.t1"; gene_id "g168"; scaffold_13_7310264-7312529 AUGUSTUS stop_codon 1664 1666 . + 0 transcript_id "g168.t1"; gene_id "g168"; # protein sequence = [DLLRCRVLTSGIFETRFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNNTNRLREALDLF # RSIWNNRWLRTISVILFLNKQDMLAEKVLAGKSKIEDYFPEYARYTIPNEATPEPGEDPKVTRAKFFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN # IRRVFNDCRDIIQRMHLRQYELL] # end gene g168 ### # # ----- sequence number 161 (length = 3924, name = scaffold_13_7420449-7424372) ----- # # annotation: # Sequence scaffold_13_7420449-7424372 length=3924 scaffold_13_7420449-7424372 database start_codon 601 603 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 643 1046 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 1110 1748 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 1812 2005 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 2123 2303 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 2473 2755 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 2866 2958 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database intron 3036 3230 . + . transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 601 642 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 1047 1109 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 1749 1811 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 2006 2122 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 2304 2472 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 2756 2865 . + 2 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 2959 3035 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database CDS 3231 3324 . + 1 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; scaffold_13_7420449-7424372 database stop_codon 3322 3324 . + 0 transcript_id "g_556-T1.1"; gene_id "g_556-T1"; # Predicted genes for sequence number 161 on both strands # start gene g169 scaffold_13_7420449-7424372 AUGUSTUS gene 1 3324 0.29 + . g169 scaffold_13_7420449-7424372 AUGUSTUS transcript 1 3324 0.29 + . g169.t1 scaffold_13_7420449-7424372 AUGUSTUS intron 1 1046 0.48 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 1110 1748 0.62 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 1812 2005 1 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 2123 2303 0.96 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 2473 2755 1 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 2866 2958 1 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS intron 3036 3230 1 + . transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 1047 1109 0.7 + 0 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 1749 1811 0.95 + 0 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 2006 2122 1 + 0 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 2304 2472 0.96 + 0 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 2756 2865 1 + 2 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 2959 3035 1 + 0 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS CDS 3231 3324 1 + 1 transcript_id "g169.t1"; gene_id "g169"; scaffold_13_7420449-7424372 AUGUSTUS stop_codon 3322 3324 . + 0 transcript_id "g169.t1"; gene_id "g169"; # protein sequence = [ARQVRSLHRSAARAGAGGIFVHRDTPDNNPDTPFEFTEENKKRIEAIISMYPEGHKQAATIPVLDLAQRQNGWLPISA # MNKVAEVLEVPPMRVYEVATFYTMFLRQPVGKYHIQICTTTPCMLCNSDSILEAIKNKLGIKVGETTPDKMFSLIEVECLGACVNAPMVQINDNYYED # LTPKDIEQIIDELKAGTIPPPGPRNGRFSCEPAGGLTCLTEVPPGPGFGVRADL] # end gene g169 ### # # ----- sequence number 162 (length = 7253, name = scaffold_13_8693621-8700873) ----- # # annotation: # Sequence scaffold_13_8693621-8700873 length=7253 scaffold_13_8693621-8700873 database start_codon 601 603 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 646 3201 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 3271 3386 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 3604 4058 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 4193 4475 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 4635 5241 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 5346 5459 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 5591 5670 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database intron 5710 6465 . + . transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 601 645 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 3202 3270 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 3387 3603 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 4059 4192 . + 2 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 4476 4634 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 5242 5345 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 5460 5590 . + 1 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 5671 5709 . + 2 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database CDS 6466 6653 . + 2 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; scaffold_13_8693621-8700873 database stop_codon 6651 6653 . + 0 transcript_id "g_575-T1.1"; gene_id "g_575-T1"; # Predicted genes for sequence number 162 on both strands # start gene g170 scaffold_13_8693621-8700873 AUGUSTUS gene 2711 3713 0.24 + . g170 scaffold_13_8693621-8700873 AUGUSTUS transcript 2711 3713 0.24 + . g170.t1 scaffold_13_8693621-8700873 AUGUSTUS start_codon 2711 2713 . + 0 transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS intron 2822 3201 0.5 + . transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS intron 3271 3386 1 + . transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS CDS 2711 2821 0.5 + 0 transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS CDS 3202 3270 1 + 0 transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS CDS 3387 3713 0.49 + 0 transcript_id "g170.t1"; gene_id "g170"; scaffold_13_8693621-8700873 AUGUSTUS stop_codon 3711 3713 . + 0 transcript_id "g170.t1"; gene_id "g170"; # protein sequence = [MDSSTPLIVEPGCNNTVSDFASQSTPQPPGCEKRTYGLVSEKVGGAEGTKLDEDFKDLERRADVTSKAVVDIISKTSE # YLQPNPASRAKLTMLNTVSKIRGQVKSPGYPQAEGLLGECMAKYGRDMGEDTNFGKAGGGRRGVEEEGEGWKRKERGRGGRRGLEEEGEG] # end gene g170 ### # start gene g171 scaffold_13_8693621-8700873 AUGUSTUS gene 4076 6653 0.49 + . g171 scaffold_13_8693621-8700873 AUGUSTUS transcript 4076 6653 0.49 + . g171.t1 scaffold_13_8693621-8700873 AUGUSTUS start_codon 4076 4078 . + 0 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS intron 4193 4475 1 + . transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS intron 4635 5241 1 + . transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS intron 5346 5459 1 + . transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS intron 5591 5670 0.99 + . transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS intron 5710 6465 1 + . transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 4076 4192 0.49 + 0 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 4476 4634 1 + 0 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 5242 5345 1 + 0 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 5460 5590 1 + 1 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 5671 5709 0.99 + 2 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS CDS 6466 6653 1 + 2 transcript_id "g171.t1"; gene_id "g171"; scaffold_13_8693621-8700873 AUGUSTUS stop_codon 6651 6653 . + 0 transcript_id "g171.t1"; gene_id "g171"; # protein sequence = [MGESMKRLAEVKDSLDIDVKQNFIDPLQAVAEKDIRDIQHHLKKLEGRRLDYDYKKKRQGKIPDEELRQALEKFHESK # DLAESSMHNLLETDVEQVSQLSSLVESQLQYHKQAVQILEELSDKLRERVTEAQSRPRREYTPKPKPSFDYGEPEQSNGGYTPAASPPAYSPAPGFNR # SSVKSRHSEPCCKALYDFEPENEGELGFSEGDIITLTNRIDENWFEGTLRGQSGFFPNNYVEVVVPLKH] # end gene g171 ### # # ----- sequence number 163 (length = 7999, name = scaffold_13_9153083-9161081) ----- # # annotation: # Sequence scaffold_13_9153083-9161081 length=7999 scaffold_13_9153083-9161081 database start_codon 601 603 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 683 1022 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 1196 2869 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 2990 3097 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 3253 3345 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 3632 4268 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 4448 5965 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 6093 6177 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 6304 6707 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 6863 7006 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database intron 7143 7330 . + . transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 601 682 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 1023 1195 . + 2 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 2870 2989 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 3098 3252 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 3346 3631 . + 1 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 4269 4447 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 5966 6092 . + 1 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 6178 6303 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 6708 6862 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 7007 7142 . + 1 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database CDS 7331 7399 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; scaffold_13_9153083-9161081 database stop_codon 7397 7399 . + 0 transcript_id "g_580-T1.1"; gene_id "g_580-T1"; # Predicted genes for sequence number 163 on both strands # start gene g172 scaffold_13_9153083-9161081 AUGUSTUS gene 1 7399 0.32 + . g172 scaffold_13_9153083-9161081 AUGUSTUS transcript 1 7399 0.32 + . g172.t1 scaffold_13_9153083-9161081 AUGUSTUS intron 1 558 0.95 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 683 1019 0.8 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 1196 2869 0.83 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 2990 3097 1 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 3253 3345 1 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 3632 4268 0.96 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 4448 5690 0.54 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 5757 5965 0.85 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 6093 6177 1 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 6304 6707 0.97 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 6863 7006 1 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS intron 7143 7330 1 + . transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 559 682 0.99 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 1020 1195 0.79 + 2 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 2870 2989 1 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 3098 3252 1 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 3346 3631 1 + 1 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 4269 4447 0.98 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 5691 5756 0.83 + 1 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 5966 6092 1 + 1 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 6178 6303 0.99 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 6708 6862 1 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 7007 7142 1 + 1 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS CDS 7331 7399 1 + 0 transcript_id "g172.t1"; gene_id "g172"; scaffold_13_9153083-9161081 AUGUSTUS stop_codon 7397 7399 . + 0 transcript_id "g172.t1"; gene_id "g172"; # protein sequence = [SIDPGQQFTWENSNMEVNKPKNRYANVIAYDHSRVVLTSVDAVPGSDYINANYIDGYRKQNAYIATQGPLPETLSDFW # RMVWEQRANTIVMMTRLEEKSRVKCDQYWPVRGTETYGMIQVTMLDSVELATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPILAFLRRV # KACNPPDAGPMVVHCSAGVGRTGCLIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQYIFIHEALLEAATCGNTEVPARNLYAHIQKLTQPP # PGETVTSMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPFESTRVCLQPIRGVEGSDYINASCIDGYSMRAIMFVRMFSSYVEHAFSLAWQQK # AYLATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPE # QGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFD # HYAT] # end gene g172 ### # # ----- sequence number 164 (length = 6174, name = scaffold_13_9218340-9224513) ----- # # annotation: # Sequence scaffold_13_9218340-9224513 length=6174 scaffold_13_9218340-9224513 database start_codon 601 603 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 613 703 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 770 917 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 969 1054 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 1127 1215 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 1285 1376 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 1434 1564 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 1637 2074 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 2159 2342 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 2424 2505 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 2566 2671 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 2753 2860 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 2915 3016 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 3128 3222 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 3280 3354 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 3418 4255 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 4374 4469 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database intron 4522 4619 . + . transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 601 612 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 704 769 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 918 968 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 1055 1126 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 1216 1284 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 1377 1433 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 1565 1636 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 2075 2158 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 2343 2423 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 2506 2565 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 2672 2752 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 2861 2914 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 3017 3127 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 3223 3279 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 3355 3417 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 4256 4373 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 4470 4521 . + 2 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database CDS 4620 5574 . + 1 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; scaffold_13_9218340-9224513 database stop_codon 5572 5574 . + 0 transcript_id "g_582-T1.1"; gene_id "g_582-T1"; # Predicted genes for sequence number 164 on both strands # start gene g173 scaffold_13_9218340-9224513 AUGUSTUS gene 40 5574 0.09 + . g173 scaffold_13_9218340-9224513 AUGUSTUS transcript 40 5574 0.09 + . g173.t1 scaffold_13_9218340-9224513 AUGUSTUS start_codon 40 42 . + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 109 395 0.59 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 447 703 0.75 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 770 917 0.71 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 969 1215 0.55 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 1285 1376 0.81 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 1434 1564 0.82 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 1637 2074 0.74 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 2159 2342 0.99 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 2424 2505 1 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 2566 2671 0.71 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 2753 2860 0.7 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 2915 3016 0.95 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 3128 3354 0.74 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 3418 4255 1 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 4374 4469 0.99 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS intron 4522 4619 0.99 + . transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 40 108 0.98 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 396 446 0.96 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 704 769 0.81 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 918 968 0.89 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 1216 1284 0.87 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 1377 1433 0.82 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 1565 1636 1 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 2075 2158 0.99 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 2343 2423 1 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 2506 2565 1 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 2672 2752 0.71 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 2861 2914 0.97 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 3017 3127 0.98 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 3355 3417 0.99 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 4256 4373 1 + 0 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 4470 4521 0.99 + 2 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS CDS 4620 5574 0.92 + 1 transcript_id "g173.t1"; gene_id "g173"; scaffold_13_9218340-9224513 AUGUSTUS stop_codon 5572 5574 . + 0 transcript_id "g173.t1"; gene_id "g173"; # protein sequence = [MDNLAAPSDISGSRGSLTESSSKDQEKNQLSSEKQSKTKQSKLAVSSDLSASSGSLSETTSKGGVMGKIFRNPFNSTP # GESDLNSDVGEKMDDREQQSSSKQNKLVGAMTKLNPFRSAAPKPENEIRTDGEEPPASAEKPSDHKQKDAEVTELPGHHDNHDKQLEGKKTNTKTVEN # RNPIQQGPKERSAGPVIPPRPTEEELKDTVTWDKLMRREAKDSQASSNVISGGRAGIMNESPDVCPRTTEEKINRPAKGGQRKQKKTNQDQSDDEVLH # EGQSVPTREQHEEEKDREEEANPSESKTAKPMQKNTEGRQQAAGSNSEENLDGKKSLFDKLEEFRVDRDDNESDQDVEHLMEWWNTVEQWEDMAQEED # LTEKEEAKAFALTAEKVQKGIRVFNKLFSERAESLWQHVIDLNNIADGLDRFNKKTKIAQITGGSTSAIGGVATIAGLALAPVTMGTSLIVTAVGLGV # ATAGGLTSAGAGISNQVNNSLDRKKVERIVEDYQEKMADINKCMKFIKQGIENLRKFDVLKIKKHAYNRDFPGLNNIYEDGAMAGKAILINANEIMRV # VQIANVAGSTAARAVQIASMATGVLTGLFVGMDIYFVAKDSKELKKGAKSEFAAKIREVAVQLHEGLVELNGIRDELQSANTPNANDSADSLATEKTQ # MFDHPDDNEDELCKKKNEMADEDNPTYNSKN] # end gene g173 ### # # ----- sequence number 165 (length = 4745, name = scaffold_13_9243058-9247802) ----- # # annotation: # Sequence scaffold_13_9243058-9247802 length=4745 scaffold_13_9243058-9247802 database start_codon 601 603 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 638 720 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 811 1020 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 1665 1909 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 2051 2194 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 2290 2500 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 2612 2726 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 2858 2979 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 3088 3203 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 3335 3447 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 3568 3664 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database intron 3782 4037 . + . transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 601 637 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 721 810 . + 2 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 1021 1664 . + 2 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 1910 2050 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 2195 2289 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 2501 2611 . + 1 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 2727 2857 . + 1 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 2980 3087 . + 2 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 3204 3334 . + 2 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 3448 3567 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 3665 3781 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database CDS 4038 4145 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; scaffold_13_9243058-9247802 database stop_codon 4143 4145 . + 0 transcript_id "g_584-T1.1"; gene_id "g_584-T1"; # Predicted genes for sequence number 165 on both strands # start gene g174 scaffold_13_9243058-9247802 AUGUSTUS gene 601 4145 0.43 + . g174 scaffold_13_9243058-9247802 AUGUSTUS transcript 601 4145 0.43 + . g174.t1 scaffold_13_9243058-9247802 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 638 1020 0.47 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 1665 1909 0.97 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 2051 2194 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 2290 2500 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 2612 2726 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 2858 2979 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 3088 3203 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 3335 3447 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 3568 3664 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS intron 3782 4037 1 + . transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 601 637 0.73 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 1021 1664 1 + 2 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 1910 2050 0.97 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 2195 2289 1 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 2501 2611 1 + 1 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 2727 2857 1 + 1 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 2980 3087 1 + 2 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 3204 3334 1 + 2 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 3448 3567 1 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 3665 3781 1 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS CDS 4038 4145 1 + 0 transcript_id "g174.t1"; gene_id "g174"; scaffold_13_9243058-9247802 AUGUSTUS stop_codon 4143 4145 . + 0 transcript_id "g174.t1"; gene_id "g174"; # protein sequence = [MAEADGKNRVFNVPKEGGGDGAGDKPMADAEGDRRPGRDREDEEEDTDSMDGSGLYSLTEEAERESEGGRRERAKERE # GKRAARKRNRPGGGNAQHSSSSDEEEEEEEDPEEDEEEDEQAMEAWLGAELRDLSRPTWRAVPSLRFREIGKSSQQFVRRVCGARSFVQRLELQGRLE # RHTGCVNTLHFNPSGTRLASGSDDLRVVIWDWARRRAELEFDSGHKSNVFQAKFLPHSGDSTLAMCARDGQIRVAELSATQRCKNTKRVAQHKGAAHK # LALEPDSPCSFLSAGEDAVVFGIDLRLDRPANKLVVVKEGDKKVGLYTIFVNPANTHHFAVGGRDQYVRIYDQRKINENDNNGVLKKFCPSHLVSSES # KTNITCLVYSHDGSELLASYNDEDIYLFDSSHSDGADYRRRYKGHRNNATVKGVNFYGPCSEFVVSGSDCGHIYLWDKFSARIVQFMEGDKGGVVNCL # EPHPHLPGLATSGLDHDVKLWAPTAENPTGLKGLKEVMKKNKRERDEDSVRHGDQYDTQLLWFLMRHMRNRRPQRGRREGAEGDTDESWSSPDSSDDE # DGGPDHVQCMSS] # end gene g174 ### # # ----- sequence number 166 (length = 3231, name = scaffold_13_12188253-12191483) ----- # # annotation: # Sequence scaffold_13_12188253-12191483 length=3231 scaffold_13_12188253-12191483 database start_codon 601 603 . + 0 transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database intron 760 2074 . + . transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database intron 2197 2435 . + . transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database CDS 601 759 . + 0 transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database CDS 2075 2196 . + 0 transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database CDS 2436 2631 . + 1 transcript_id "g_618-T1.1"; gene_id "g_618-T1"; scaffold_13_12188253-12191483 database stop_codon 2629 2631 . + 0 transcript_id "g_618-T1.1"; gene_id "g_618-T1"; # Predicted genes for sequence number 166 on both strands # start gene g175 scaffold_13_12188253-12191483 AUGUSTUS gene 1 237 0.87 + . g175 scaffold_13_12188253-12191483 AUGUSTUS transcript 1 237 0.87 + . g175.t1 scaffold_13_12188253-12191483 AUGUSTUS intron 1 96 1 + . transcript_id "g175.t1"; gene_id "g175"; scaffold_13_12188253-12191483 AUGUSTUS CDS 97 237 0.87 + 0 transcript_id "g175.t1"; gene_id "g175"; scaffold_13_12188253-12191483 AUGUSTUS stop_codon 235 237 . + 0 transcript_id "g175.t1"; gene_id "g175"; # protein sequence = [HHLAELLTRKWLTGSHAVDTICVTVEDYFNDFAKIKKPFNQVQLSV] # end gene g175 ### # start gene g176 scaffold_13_12188253-12191483 AUGUSTUS gene 344 2631 0.35 + . g176 scaffold_13_12188253-12191483 AUGUSTUS transcript 344 2631 0.35 + . g176.t1 scaffold_13_12188253-12191483 AUGUSTUS start_codon 344 346 . + 0 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS intron 527 597 0.59 + . transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS intron 760 1264 1 + . transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS intron 1387 2091 0.79 + . transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS intron 2197 2435 1 + . transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS CDS 344 526 0.42 + 0 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS CDS 598 759 1 + 0 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS CDS 1265 1386 0.86 + 0 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS CDS 2092 2196 0.79 + 1 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS CDS 2436 2631 0.99 + 1 transcript_id "g176.t1"; gene_id "g176"; scaffold_13_12188253-12191483 AUGUSTUS stop_codon 2629 2631 . + 0 transcript_id "g176.t1"; gene_id "g176"; # protein sequence = [MMMMMMMMVVVVVVMNDDDGGGGDDDDDDEDDAGGGDDDDGGGGGDDDGGGDDDDDDNDYGEMTSEAHRRVVVEYIKA # VMQKRISFKNADERKEGAERMIKEAEQFKFLFRKLTAGEDTDRLCDAIAAIAEVFKLTDPSLLYLEVSTLVSKYPDIRLCDAIAAIAEVFKLTDPSLL # YLEVSTLVSKYPDIREEHIIALLAVRGDGSRDMRQTIIETLNQNKPSYAGVTQPIFKDITVPSMSMTTMTSMGVPKLLK] # end gene g176 ### # # ----- sequence number 167 (length = 7731, name = scaffold_13_14152398-14160128) ----- # # annotation: # Sequence scaffold_13_14152398-14160128 length=7731 scaffold_13_14152398-14160128 database start_codon 601 603 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 825 1068 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 1157 1518 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 1582 3395 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 3906 4817 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 4918 5222 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database intron 5514 6802 . + . transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 601 824 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 1069 1156 . + 1 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 1519 1581 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 3396 3905 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 4818 4917 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 5223 5513 . + 2 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database CDS 6803 7131 . + 2 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; scaffold_13_14152398-14160128 database stop_codon 7129 7131 . + 0 transcript_id "g_605-T1.1"; gene_id "g_605-T1"; # Predicted genes for sequence number 167 on both strands # start gene g177 scaffold_13_14152398-14160128 AUGUSTUS gene 601 7131 0.71 + . g177 scaffold_13_14152398-14160128 AUGUSTUS transcript 601 7131 0.71 + . g177.t1 scaffold_13_14152398-14160128 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 825 1068 1 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 1157 1518 0.9 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 1582 3395 0.92 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 3906 4817 1 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 4918 5222 1 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS intron 5514 6802 0.99 + . transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 601 824 0.89 + 0 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 1069 1156 0.94 + 1 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 1519 1581 0.93 + 0 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 3396 3905 1 + 0 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 4818 4917 1 + 0 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 5223 5513 0.99 + 2 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS CDS 6803 7131 1 + 2 transcript_id "g177.t1"; gene_id "g177"; scaffold_13_14152398-14160128 AUGUSTUS stop_codon 7129 7131 . + 0 transcript_id "g177.t1"; gene_id "g177"; # protein sequence = [MDRHQPSTRSFVPQRSPVFGSVPCESPMRLSICSTTGSRFELSVPQGETLEGLKRSLSQRLRIPKDRLVILHKETQMN # AGNLVDQGVSDGSKLTLVPAVEAGLTPQPPRSGHTMIQALENLTETQVSDFLSGRSPLTLALGIGAHLMYVQLQLASQNAVGQQHHGNRNGGKVHSGK # TGSSRVSRPYPSPTNPSYVSHTVSPVGTSSPPYHRTPVIRHPPPHAASPTSSPLPSHGPPPCLPLSSAAPLYPPHAVCPSPAAPSPAAPSPVAPSPVA # PSPVAPSPAPSSPTPAAPFPEESCSSSAPPSREPGAVIESFVSHSPGVFSGTFSGTLPPISQGGVTHPRRGIATILQILNDLLSATRHHQGAPTSCQL # RGPGPASPSCPLTSDPPTATAATAPSRATSEPSDSSYSQGHRLLQPSPSAKHTGDGGSQQQPSSSEENRALRRKLENLQLLMYQRRLCRRARRGTHPS # HTSAHPYSQRLRHPWSPGQRKAARRHSNSSLSGSEGTSQDDTEADEVMEESPWKPELTSDLVVA] # end gene g177 ### # # ----- sequence number 168 (length = 3628, name = scaffold_14_5625375-5629002) ----- # # annotation: # Sequence scaffold_14_5625375-5629002 length=3628 scaffold_14_5625375-5629002 database start_codon 601 603 . + 0 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database intron 635 1431 . + . transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database intron 1802 2068 . + . transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database intron 2148 2441 . + . transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database intron 2549 2714 . + . transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database intron 2865 2982 . + . transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 601 634 . + 0 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 1432 1801 . + 2 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 2069 2147 . + 1 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 2442 2548 . + 0 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 2715 2864 . + 1 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database CDS 2983 3028 . + 1 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; scaffold_14_5625375-5629002 database stop_codon 3026 3028 . + 0 transcript_id "g_647-T1.1"; gene_id "g_647-T1"; # Predicted genes for sequence number 168 on both strands # start gene g178 scaffold_14_5625375-5629002 AUGUSTUS gene 601 3028 0.63 + . g178 scaffold_14_5625375-5629002 AUGUSTUS transcript 601 3028 0.63 + . g178.t1 scaffold_14_5625375-5629002 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS intron 635 1431 0.87 + . transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS intron 1802 2068 0.73 + . transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS intron 2148 2441 0.93 + . transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS intron 2549 2714 1 + . transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS intron 2865 2982 0.99 + . transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 601 634 0.97 + 0 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 1432 1801 0.82 + 2 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 2069 2147 0.73 + 1 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 2442 2548 1 + 0 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 2715 2864 0.99 + 1 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS CDS 2983 3028 0.99 + 1 transcript_id "g178.t1"; gene_id "g178"; scaffold_14_5625375-5629002 AUGUSTUS stop_codon 3026 3028 . + 0 transcript_id "g178.t1"; gene_id "g178"; # protein sequence = [MSERSGEENLQGSWVELHFNGSHAGGATTQPANSQEAEKENAPVSTQGDEHITGSAETNEKVPCLPLDGEPASGSILT # LDGDVASGPTQEGEQVPGLEQAGTQAASQGLDLEKMLLEAQHESGRSSSRGSVPCDSPPRSQTPLHLRRGSEVPSSAEKNSSQSEEDYLDRRREVENL # MKKNADWIWDWSSRPENLPPKEFLLKHPKRATPLSIRNTRVMKKGGIFSADFVKVFLPSLLLSHILAIGLGVYIGRRLSPPSSSF] # end gene g178 ### # # ----- sequence number 169 (length = 7504, name = scaffold_14_5950623-5958126) ----- # # annotation: # Sequence scaffold_14_5950623-5958126 length=7504 scaffold_14_5950623-5958126 database start_codon 601 603 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 709 2721 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 2834 4820 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 5029 5264 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 5375 5549 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 5687 5965 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 6113 6213 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 6286 6399 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database intron 6469 6670 . + . transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 601 708 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 2722 2833 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 4821 5028 . + 2 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 5265 5374 . + 1 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 5550 5686 . + 2 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 5966 6112 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 6214 6285 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 6400 6468 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database CDS 6671 6904 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; scaffold_14_5950623-5958126 database stop_codon 6902 6904 . + 0 transcript_id "g_649-T1.1"; gene_id "g_649-T1"; # Predicted genes for sequence number 169 on both strands # start gene g179 scaffold_14_5950623-5958126 AUGUSTUS gene 601 6904 0.42 + . g179 scaffold_14_5950623-5958126 AUGUSTUS transcript 601 6904 0.42 + . g179.t1 scaffold_14_5950623-5958126 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 709 1294 0.88 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 1394 2721 0.91 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 2834 3907 0.67 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 3998 4820 0.66 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 5029 5264 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 5375 5549 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 5687 5965 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 6113 6213 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 6286 6399 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS intron 6469 6670 1 + . transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 601 708 0.98 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 1295 1393 0.9 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 2722 2833 0.87 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 3908 3997 0.68 + 2 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 4821 5028 1 + 2 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 5265 5374 1 + 1 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 5550 5686 1 + 2 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 5966 6112 1 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 6214 6285 1 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 6400 6468 1 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS CDS 6671 6904 1 + 0 transcript_id "g179.t1"; gene_id "g179"; scaffold_14_5950623-5958126 AUGUSTUS stop_codon 6902 6904 . + 0 transcript_id "g179.t1"; gene_id "g179"; # protein sequence = [MLLAVISAVLLTTGVVKCDTTILRKAGLDPEVNMNITWGGAPLFHPPRQLAVSQGIVLTDSLERPCLLTSEIIRYWGY # PAEEHDVVTEDGYILSVNRIPHGLVNQPAQLCVCLIREPDWLEIRHFLVSHFLWSQGRHSGSPKPVAFLQHGLLAAGSNWITNLPNTSLGYLLADAGY # DVWLGNSRGNTWSRRHVSLSPSQNEFWEFSYDEMAKKDLPAVVNHILKTTGQEQIFYVGHSQGTTIAFIAFSSMPELASKIKMFFGLAPVATVAFTKS # PMTKLSLIPDFLIWDLFGKKDFFPQSKLIKWFAEEFCSKEPLSELCGNLFFVLCGFDEKNLNMSRTPVYTTHCPAGTSVQNMVHWSQAIHGGKLMAYD # YGRAGNMAHYNQSTPPLYRVQDMQVPTALWSGGHDTLADPKDVAVLLTQVPNLVFHQHIEAWEHLDFIWGLDAPQLMYQQMIKLMEQHR] # end gene g179 ### # # ----- sequence number 170 (length = 2001, name = scaffold_14_6879818-6881818) ----- # # annotation: # Sequence scaffold_14_6879818-6881818 length=2001 scaffold_14_6879818-6881818 database start_codon 601 603 . + 0 transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database intron 696 948 . + . transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database intron 1157 1272 . + . transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database CDS 601 695 . + 0 transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database CDS 949 1156 . + 1 transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database CDS 1273 1401 . + 0 transcript_id "g_656-T1.1"; gene_id "g_656-T1"; scaffold_14_6879818-6881818 database stop_codon 1399 1401 . + 0 transcript_id "g_656-T1.1"; gene_id "g_656-T1"; # Predicted genes for sequence number 170 on both strands # start gene g180 scaffold_14_6879818-6881818 AUGUSTUS gene 601 1401 0.9 + . g180 scaffold_14_6879818-6881818 AUGUSTUS transcript 601 1401 0.9 + . g180.t1 scaffold_14_6879818-6881818 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS intron 696 948 1 + . transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS intron 1157 1272 0.9 + . transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS CDS 601 695 1 + 0 transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS CDS 949 1156 1 + 1 transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS CDS 1273 1401 0.9 + 0 transcript_id "g180.t1"; gene_id "g180"; scaffold_14_6879818-6881818 AUGUSTUS stop_codon 1399 1401 . + 0 transcript_id "g180.t1"; gene_id "g180"; # protein sequence = [MSLTDKDKAEVKALWKKVSKLSAEIGSDALGRMLAVYPQTKTYFTHWSDLTPGSAPVKTHGALIFSGVAEAVEKIDNL # TAGLTNLSELHAFQLRVDPGNFKLLVHCILVSIATQLPNDFTPERHVALDKFLSNVALALSEKYR] # end gene g180 ### # # ----- sequence number 171 (length = 2053, name = scaffold_14_8002058-8004110) ----- # # annotation: # Sequence scaffold_14_8002058-8004110 length=2053 scaffold_14_8002058-8004110 database start_codon 601 603 . + 0 transcript_id "g_669-T1.1"; gene_id "g_669-T1"; scaffold_14_8002058-8004110 database intron 673 1096 . + . transcript_id "g_669-T1.1"; gene_id "g_669-T1"; scaffold_14_8002058-8004110 database CDS 601 672 . + 0 transcript_id "g_669-T1.1"; gene_id "g_669-T1"; scaffold_14_8002058-8004110 database CDS 1097 1453 . + 0 transcript_id "g_669-T1.1"; gene_id "g_669-T1"; scaffold_14_8002058-8004110 database stop_codon 1451 1453 . + 0 transcript_id "g_669-T1.1"; gene_id "g_669-T1"; # Predicted genes for sequence number 171 on both strands # start gene g181 scaffold_14_8002058-8004110 AUGUSTUS gene 531 1453 0.44 + . g181 scaffold_14_8002058-8004110 AUGUSTUS transcript 531 1453 0.44 + . g181.t1 scaffold_14_8002058-8004110 AUGUSTUS start_codon 531 533 . + 0 transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS intron 673 1184 0.87 + . transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS intron 1329 1421 0.67 + . transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS CDS 531 672 0.72 + 0 transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS CDS 1185 1328 0.88 + 2 transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS CDS 1422 1453 0.67 + 2 transcript_id "g181.t1"; gene_id "g181"; scaffold_14_8002058-8004110 AUGUSTUS stop_codon 1451 1453 . + 0 transcript_id "g181.t1"; gene_id "g181"; # protein sequence = [MTHRASPAKAYDFLLKFLLVGDSDVGKGEILASLQDGATESPYGYNMAAELEVRTEQQVVVSGVTVGGFYPADVDFTG # RTVLVAAAVGKAAVSNTRYEVDKIIRH] # end gene g181 ### # # ----- sequence number 172 (length = 3828, name = scaffold_14_8010410-8014237) ----- # # annotation: # Sequence scaffold_14_8010410-8014237 length=3828 scaffold_14_8010410-8014237 database start_codon 577 579 . + 0 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database intron 668 1930 . + . transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database intron 2032 2332 . + . transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database intron 2492 2586 . + . transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database intron 2840 3193 . + . transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database CDS 577 667 . + 0 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database CDS 1931 2031 . + 2 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database CDS 2333 2491 . + 0 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database CDS 2587 2839 . + 0 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database CDS 3194 3228 . + 2 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; scaffold_14_8010410-8014237 database stop_codon 3226 3228 . + 0 transcript_id "g_671-T1.1"; gene_id "g_671-T1"; # Predicted genes for sequence number 172 on both strands # start gene g182 scaffold_14_8010410-8014237 AUGUSTUS gene 577 3228 0.88 + . g182 scaffold_14_8010410-8014237 AUGUSTUS transcript 577 3228 0.88 + . g182.t1 scaffold_14_8010410-8014237 AUGUSTUS start_codon 577 579 . + 0 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS intron 668 1930 1 + . transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS intron 2032 2332 1 + . transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS intron 2492 2586 1 + . transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS intron 2840 3193 0.88 + . transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS CDS 577 667 1 + 0 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS CDS 1931 2031 1 + 2 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS CDS 2333 2491 1 + 0 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS CDS 2587 2839 0.95 + 0 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS CDS 3194 3228 0.88 + 2 transcript_id "g182.t1"; gene_id "g182"; scaffold_14_8010410-8014237 AUGUSTUS stop_codon 3226 3228 . + 0 transcript_id "g182.t1"; gene_id "g182"; # protein sequence = [MNIFRLTGDLSHLAAIIILLLKIWKTRSCAGISGKSQILFSLVFTTRYLDLLTSFISLYNTTMKVIYIGCAYATVYLI # YAKFKATYDGNHDTFRVEFLVVPVGGLAFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLINWIWRFYFEGFF # DMIAIVAGVVQTILYCDFFYLYVTKVLKGKKLSLPA] # end gene g182 ### # # ----- sequence number 173 (length = 3617, name = scaffold_14_9192359-9195975) ----- # # annotation: # Sequence scaffold_14_9192359-9195975 length=3617 scaffold_14_9192359-9195975 database start_codon 601 603 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 690 1209 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 1338 1622 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 1694 1816 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 1967 2084 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 2181 2356 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database intron 2414 2717 . + . transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 601 689 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 1210 1337 . + 1 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 1623 1693 . + 2 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 1817 1966 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 2085 2180 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 2357 2413 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database CDS 2718 3017 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; scaffold_14_9192359-9195975 database stop_codon 3015 3017 . + 0 transcript_id "g_681-T1.1"; gene_id "g_681-T1"; # Predicted genes for sequence number 173 on both strands # start gene g183 scaffold_14_9192359-9195975 AUGUSTUS gene 601 3017 0.61 + . g183 scaffold_14_9192359-9195975 AUGUSTUS transcript 601 3017 0.61 + . g183.t1 scaffold_14_9192359-9195975 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 690 1209 0.75 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 1338 1622 0.98 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 1694 1816 1 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 1967 2084 1 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 2181 2356 0.99 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS intron 2414 2717 0.99 + . transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 601 689 0.62 + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 1210 1337 0.92 + 1 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 1623 1693 1 + 2 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 1817 1966 1 + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 2085 2180 1 + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 2357 2413 0.99 + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS CDS 2718 3017 1 + 0 transcript_id "g183.t1"; gene_id "g183"; scaffold_14_9192359-9195975 AUGUSTUS stop_codon 3015 3017 . + 0 transcript_id "g183.t1"; gene_id "g183"; # protein sequence = [MAPLMLLSASGGSLMAKSFGLISSFSSIARWTCAFPATKSFSTTSGGPPKRPLNGYMRFLNQQRPIVLRQNPDIQFVD # ITKKIAQQWRTLTPEQKRPFEDASAVERERFKVILQQYQAQLSPAQSIALAEERREKLAQRKAVRKKRELNRLGKPKRPRSAFNIYMTEHFEEARGVT # FPMKMKTLAEDWKKMSHFQKQVYMQLSEDDMVRYKNEIKSWEEQMVEIGRDDLVRRKWLVRTRAAVTGETGVKKKRTVAKKTVAKKTVAKKTVAKKTV # AKKGSKVVKKVLSVKSAGRKKA] # end gene g183 ### # # ----- sequence number 174 (length = 3534, name = scaffold_14_12331734-12335267) ----- # # annotation: # Sequence scaffold_14_12331734-12335267 length=3534 scaffold_14_12331734-12335267 database start_codon 601 603 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 643 1180 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 1214 1329 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 1393 1580 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 1686 1792 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 1839 1950 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 2070 2182 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 2252 2351 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 2420 2503 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 2559 2663 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database intron 2751 2853 . + . transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 601 642 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 1181 1213 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 1330 1392 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 1581 1685 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 1793 1838 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 1951 2069 . + 2 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 2183 2251 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 2352 2419 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 2504 2558 . + 1 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 2664 2750 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database CDS 2854 2934 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; scaffold_14_12331734-12335267 database stop_codon 2932 2934 . + 0 transcript_id "g_707-T1.1"; gene_id "g_707-T1"; # Predicted genes for sequence number 174 on both strands # start gene g184 scaffold_14_12331734-12335267 AUGUSTUS gene 601 2934 0.26 + . g184 scaffold_14_12331734-12335267 AUGUSTUS transcript 601 2934 0.26 + . g184.t1 scaffold_14_12331734-12335267 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 643 1180 0.42 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 1214 1329 0.58 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 1393 1580 0.89 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 1686 1792 1 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 1839 1950 1 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 2070 2182 0.88 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 2252 2351 0.92 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 2420 2503 1 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 2559 2663 1 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS intron 2751 2853 0.99 + . transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 601 642 0.47 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 1181 1213 0.63 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 1330 1392 0.76 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 1581 1685 0.99 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 1793 1838 1 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 1951 2069 0.95 + 2 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 2183 2251 0.91 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 2352 2419 1 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 2504 2558 1 + 1 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 2664 2750 1 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS CDS 2854 2934 0.99 + 0 transcript_id "g184.t1"; gene_id "g184"; scaffold_14_12331734-12335267 AUGUSTUS stop_codon 2932 2934 . + 0 transcript_id "g184.t1"; gene_id "g184"; # protein sequence = [MSSLLKVDNEIKTKVDAFRERITGEAENLVANFFPKKLLELDHFLKDPILNICELKEIHSEINLTVPDPILLSDLHDG # LEAQNAKKRKMDDGPGDMVAGTKVFVMPGGMMKSNSKLVDLIEKVKPEIRTLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVEGEAASY # LDQISRYYITRAKLVSKIAKYPHVEDYRRTVTEIDEKEYISLKIIVSELRNQYVTLHDMILKNIEKIKRPRSSNTDALY] # end gene g184 ### # # ----- sequence number 175 (length = 4358, name = scaffold_15_180545-184902) ----- # # annotation: # Sequence scaffold_15_180545-184902 length=4358 scaffold_15_180545-184902 database start_codon 601 603 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database intron 968 1658 . + . transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database intron 1720 2005 . + . transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database intron 2145 2596 . + . transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database intron 2687 3232 . + . transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database intron 3335 3671 . + . transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 601 967 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 1659 1719 . + 2 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 2006 2144 . + 1 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 2597 2686 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 3233 3334 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database CDS 3672 3758 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; scaffold_15_180545-184902 database stop_codon 3756 3758 . + 0 transcript_id "g_740-T1.1"; gene_id "g_740-T1"; # Predicted genes for sequence number 175 on both strands # start gene g185 scaffold_15_180545-184902 AUGUSTUS gene 1111 3758 0.09 + . g185 scaffold_15_180545-184902 AUGUSTUS transcript 1111 3758 0.09 + . g185.t1 scaffold_15_180545-184902 AUGUSTUS start_codon 1111 1113 . + 0 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS intron 1119 1860 0.09 + . transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS intron 1876 2005 0.6 + . transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS intron 2145 2596 1 + . transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS intron 2687 3232 1 + . transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS intron 3335 3671 1 + . transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 1111 1118 0.19 + 0 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 1861 1875 0.6 + 1 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 2006 2144 1 + 1 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 2597 2686 1 + 0 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 3233 3334 1 + 0 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS CDS 3672 3758 1 + 0 transcript_id "g185.t1"; gene_id "g185"; scaffold_15_180545-184902 AUGUSTUS stop_codon 3756 3758 . + 0 transcript_id "g185.t1"; gene_id "g185"; # protein sequence = [MVHSPLCRDTAGQERFHTITTSYYRGAMGIMLVYDISNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRIVP # KAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGVTGWKSKCCS] # end gene g185 ### # # ----- sequence number 176 (length = 3983, name = scaffold_15_529874-533856) ----- # # annotation: # Sequence scaffold_15_529874-533856 length=3983 scaffold_15_529874-533856 database start_codon 601 603 . + 0 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database intron 883 1386 . + . transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database intron 1556 1829 . + . transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database intron 1947 2061 . + . transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database CDS 601 882 . + 0 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database CDS 1387 1555 . + 0 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database CDS 1830 1946 . + 2 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database CDS 2062 3383 . + 2 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; scaffold_15_529874-533856 database stop_codon 3381 3383 . + 0 transcript_id "g_744-T1.1"; gene_id "g_744-T1"; # Predicted genes for sequence number 176 on both strands # start gene g186 scaffold_15_529874-533856 AUGUSTUS gene 601 3383 0.85 + . g186 scaffold_15_529874-533856 AUGUSTUS transcript 601 3383 0.85 + . g186.t1 scaffold_15_529874-533856 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS intron 883 1386 0.99 + . transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS intron 1556 1829 1 + . transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS intron 1947 2061 1 + . transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS CDS 601 882 0.85 + 0 transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS CDS 1387 1555 0.99 + 0 transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS CDS 1830 1946 1 + 2 transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS CDS 2062 3383 1 + 2 transcript_id "g186.t1"; gene_id "g186"; scaffold_15_529874-533856 AUGUSTUS stop_codon 3381 3383 . + 0 transcript_id "g186.t1"; gene_id "g186"; # protein sequence = [MSASSPRDSVVKKKHVRFARMTDEDENDDQEDTLFDKRKDIRRGLKSALKAGKRRKNQGFDEVEIIDGAGSDSSLGNC # SRWMVTLALCSSFLGLGMSISVVGPTFQDLAINVNQDISNISYIFVGRASGYIGGSLFGGILFEYLNPHLMLGFSMLITAFGMCAIPFCKKAAVLTIM # MCGIGTTMGILDTGGNVLILNTWKAQAGPHMQALHFSFAVGAFASPIIAKLIFGTDLMPHKNISAVAMVTSPPIANQVSDASSLSATFLSAIQSWTAT # LKSMWAYVVIGAFIFLVSLLFFFIYTCSSSSRDKSQAQAAKPLVSRHHNALIILLFWFFFWYVGAEVAYGSFIFTFAKDHAHMEQSQAAGLNSLFWGT # FAAGRGLAIFFATCMHPGTMILLSLLGCTLSSLLLTLFSNVQLVLWICTGLYGISMSTTFPSGISWVEQYTTVTGRSAAVFVVGAALGEMVLPALLGF # LLGRITGDHPLLMYLALLTATITSILFPVMYKLATTPSRLSRRPNVRGRPEADDGEYRQALLDSRADEDDEDEADQWNDADFEVIEMDEAGLMNSPKK # PFSSPPDVAAGLSGDTSPIIQSALSKSPQHADSSSFSDHLPLLGESPRRKLLLSLEREKRD] # end gene g186 ### # # ----- sequence number 177 (length = 1731, name = scaffold_15_6793589-6795319) ----- # # annotation: # Sequence scaffold_15_6793589-6795319 length=1731 scaffold_15_6793589-6795319 database start_codon 601 603 . + 0 transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database intron 653 739 . + . transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database intron 917 991 . + . transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database CDS 601 652 . + 0 transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database CDS 740 916 . + 2 transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database CDS 992 1131 . + 2 transcript_id "g_770-T1.1"; gene_id "g_770-T1"; scaffold_15_6793589-6795319 database stop_codon 1129 1131 . + 0 transcript_id "g_770-T1.1"; gene_id "g_770-T1"; # Predicted genes for sequence number 177 on both strands # start gene g187 scaffold_15_6793589-6795319 AUGUSTUS gene 601 1131 0.33 + . g187 scaffold_15_6793589-6795319 AUGUSTUS transcript 601 1131 0.33 + . g187.t1 scaffold_15_6793589-6795319 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS intron 653 739 1 + . transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS intron 917 1108 0.33 + . transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS CDS 601 652 1 + 0 transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS CDS 740 916 0.94 + 2 transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS CDS 1109 1131 0.33 + 2 transcript_id "g187.t1"; gene_id "g187"; scaffold_15_6793589-6795319 AUGUSTUS stop_codon 1129 1131 . + 0 transcript_id "g187.t1"; gene_id "g187"; # protein sequence = [MASATAQQPTLTVEQARVVLSEVIQAFSVPENAARMEEARESACNDMGKMLQLVLPVSTQIQQEVIKAYGFNNEGEGG # GIPAS] # end gene g187 ### # # ----- sequence number 178 (length = 4964, name = scaffold_15_9721961-9726924) ----- # # annotation: # Sequence scaffold_15_9721961-9726924 length=4964 scaffold_15_9721961-9726924 database start_codon 601 603 . + 0 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database intron 614 1215 . + . transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database intron 1405 2205 . + . transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database intron 2245 3669 . + . transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database intron 3733 3978 . + . transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database intron 4111 4341 . + . transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 601 613 . + 0 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 1216 1404 . + 2 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 2206 2244 . + 2 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 3670 3732 . + 2 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 3979 4110 . + 2 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database CDS 4342 4364 . + 2 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; scaffold_15_9721961-9726924 database stop_codon 4362 4364 . + 0 transcript_id "g_788-T1.1"; gene_id "g_788-T1"; # Predicted genes for sequence number 178 on both strands # start gene g188 scaffold_15_9721961-9726924 AUGUSTUS gene 131 494 0.3 + . g188 scaffold_15_9721961-9726924 AUGUSTUS transcript 131 494 0.3 + . g188.t1 scaffold_15_9721961-9726924 AUGUSTUS start_codon 131 133 . + 0 transcript_id "g188.t1"; gene_id "g188"; scaffold_15_9721961-9726924 AUGUSTUS intron 192 309 0.38 + . transcript_id "g188.t1"; gene_id "g188"; scaffold_15_9721961-9726924 AUGUSTUS CDS 131 191 0.73 + 0 transcript_id "g188.t1"; gene_id "g188"; scaffold_15_9721961-9726924 AUGUSTUS CDS 310 494 0.36 + 2 transcript_id "g188.t1"; gene_id "g188"; scaffold_15_9721961-9726924 AUGUSTUS stop_codon 492 494 . + 0 transcript_id "g188.t1"; gene_id "g188"; # protein sequence = [MQLVSATKNNSQKAMQREPGAGYLPLLNLQGGGNRLLHHCCQVERHWQQQTLRTGQELALVLLKSVSSDAFALISQSV # CED] # end gene g188 ### # start gene g189 scaffold_15_9721961-9726924 AUGUSTUS gene 774 1409 0.38 + . g189 scaffold_15_9721961-9726924 AUGUSTUS transcript 774 1409 0.38 + . g189.t1 scaffold_15_9721961-9726924 AUGUSTUS start_codon 774 776 . + 0 transcript_id "g189.t1"; gene_id "g189"; scaffold_15_9721961-9726924 AUGUSTUS intron 988 1215 0.96 + . transcript_id "g189.t1"; gene_id "g189"; scaffold_15_9721961-9726924 AUGUSTUS CDS 774 987 0.9 + 0 transcript_id "g189.t1"; gene_id "g189"; scaffold_15_9721961-9726924 AUGUSTUS CDS 1216 1409 0.41 + 2 transcript_id "g189.t1"; gene_id "g189"; scaffold_15_9721961-9726924 AUGUSTUS stop_codon 1407 1409 . + 0 transcript_id "g189.t1"; gene_id "g189"; # protein sequence = [MWELKGAYGVDYGVDYGVDYGLNYGLDYDVDYGVDYDLDYGMDYGVDYGVDYAADYDVDYGVDYGVDYGQAVQSSSTV # TMVMTSKEAGSKRTVLDDLYLTFRSPMGWMLVVALLITWASVAIVLFDLLDYKTLTG] # end gene g189 ### # # ----- sequence number 179 (length = 5493, name = scaffold_15_14289578-14295070) ----- # # annotation: # Sequence scaffold_15_14289578-14295070 length=5493 scaffold_15_14289578-14295070 database start_codon 601 603 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 713 2291 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 2441 2566 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 2738 2927 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 3385 3537 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 3679 4017 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 4245 4424 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database intron 4598 4883 . + . transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 601 712 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 2292 2440 . + 2 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 2567 2737 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 2928 3384 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 3538 3678 . + 2 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 4018 4244 . + 2 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 4425 4597 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database CDS 4884 4893 . + 1 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; scaffold_15_14289578-14295070 database stop_codon 4891 4893 . + 0 transcript_id "g_817-T1.1"; gene_id "g_817-T1"; # Predicted genes for sequence number 179 on both strands # start gene g190 scaffold_15_14289578-14295070 AUGUSTUS gene 1 4601 0.28 + . g190 scaffold_15_14289578-14295070 AUGUSTUS transcript 1 4601 0.28 + . g190.t1 scaffold_15_14289578-14295070 AUGUSTUS intron 1 567 0.5 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 713 2291 0.67 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 2441 2566 1 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 2738 2927 1 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 3385 3537 0.98 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 3679 4017 0.99 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS intron 4245 4424 1 + . transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 568 712 0.47 + 0 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 2292 2440 0.73 + 2 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 2567 2737 1 + 0 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 2928 3384 0.98 + 0 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 3538 3678 0.99 + 2 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 4018 4244 1 + 2 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS CDS 4425 4601 0.84 + 0 transcript_id "g190.t1"; gene_id "g190"; scaffold_15_14289578-14295070 AUGUSTUS stop_codon 4599 4601 . + 0 transcript_id "g190.t1"; gene_id "g190"; # protein sequence = [VCFSFGLYRTEMLMMMMMKRKLPTRLLGVAMLLVSAHCLLPPSGEDLKQISKLGEKYLDKQIDNAINGVKEMKTVMEN # SGQEHKNFLSALEKTKQQKEDALREAQQMEEKLSEEQEVCNETMQALWEECKPCLKNTCVKFYSRTCSSGAGMVGRQLERVLNKTSPFSIWINGQNMD # VLEQEDRRQRQEFQNLEQRFSEVSEGVDSIFLDSMKVFDHMRSLNPGPLFPSPFRMPSLWQGTGQQEQGQGQVAAEQDMGGTRVRRSPFQRPMFHGFH # DTFFPMMDMAKNIFESMGPLMDPDSNQDAIPSEDGSVNEDVVLTRPFGNGQMTCREIRRNTAGCINLREECEKCKEIQSVDCSGRKPLEGPLKKELEQ # ALAMAERFTQEYNSLLRQFEEKMRNTSSLLDLFNNQFGWVSSLANNTKTKDGIFRIKAVITQDKEIGDSNDTSVSVQLFDAPPMTFSVPGDISWSDPK # FSEVVAQEALERYKQTTV] # end gene g190 ### # # ----- sequence number 180 (length = 5593, name = scaffold_15_14634517-14640109) ----- # # annotation: # Sequence scaffold_15_14634517-14640109 length=5593 scaffold_15_14634517-14640109 database start_codon 601 603 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 674 969 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 1102 1434 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 1517 1634 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 1679 2165 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 2288 2579 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 2647 2845 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 2901 3024 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 3191 3370 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 3442 3551 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 3675 4008 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database intron 4106 4909 . + . transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 601 673 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 970 1101 . + 2 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 1435 1516 . + 2 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 1635 1678 . + 1 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 2166 2287 . + 2 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 2580 2646 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 2846 2900 . + 2 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 3025 3190 . + 1 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 3371 3441 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 3552 3674 . + 1 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 4009 4105 . + 1 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database CDS 4910 4993 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; scaffold_15_14634517-14640109 database stop_codon 4991 4993 . + 0 transcript_id "g_818-T1.1"; gene_id "g_818-T1"; # Predicted genes for sequence number 180 on both strands # start gene g191 scaffold_15_14634517-14640109 AUGUSTUS gene 1 263 0.52 - . g191 scaffold_15_14634517-14640109 AUGUSTUS transcript 1 263 0.52 - . g191.t1 scaffold_15_14634517-14640109 AUGUSTUS intron 92 173 0.52 - . transcript_id "g191.t1"; gene_id "g191"; scaffold_15_14634517-14640109 AUGUSTUS CDS 1 91 0.52 - 0 transcript_id "g191.t1"; gene_id "g191"; scaffold_15_14634517-14640109 AUGUSTUS CDS 174 263 0.54 - 0 transcript_id "g191.t1"; gene_id "g191"; scaffold_15_14634517-14640109 AUGUSTUS start_codon 261 263 . - 0 transcript_id "g191.t1"; gene_id "g191"; # protein sequence = [MEIESVNVPIAGFQPSDEEIERWMDSAFDMAKEALENGEVPVGCLLVYNNEVIGKGRNEV] # end gene g191 ### # start gene g192 scaffold_15_14634517-14640109 AUGUSTUS gene 601 4993 0.26 + . g192 scaffold_15_14634517-14640109 AUGUSTUS transcript 601 4993 0.26 + . g192.t1 scaffold_15_14634517-14640109 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 674 930 0.64 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 1102 1434 0.93 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 1534 2165 0.85 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 2288 2579 1 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 2647 2845 0.6 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 2901 3024 1 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 3191 3370 1 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 3442 3551 1 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 3675 4008 0.99 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS intron 4106 4909 1 + . transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 601 673 0.57 + 0 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 931 1101 0.9 + 2 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 1435 1533 0.85 + 2 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 2166 2287 1 + 2 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 2580 2646 0.6 + 0 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 2846 2900 1 + 2 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 3025 3190 1 + 1 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 3371 3441 1 + 0 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 3552 3674 1 + 1 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 4009 4105 0.99 + 1 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS CDS 4910 4993 1 + 0 transcript_id "g192.t1"; gene_id "g192"; scaffold_15_14634517-14640109 AUGUSTUS stop_codon 4991 4993 . + 0 transcript_id "g192.t1"; gene_id "g192"; # protein sequence = [MFSSTWNFLKRHRRKFFFAGALVGDSGEIELNYSPHTGVYFLGKYAQKKIREIQEREAAEYIAQARRQFHFESNQRTC # NMTVLSMLPTLREAIIHLLNSESLTALLKTKYETIASFTRSVVALYSTCMLVTLLRIQLNIIGGYLYLDNSIGRNGVAPLAPPDVQQQYLSSIQHLLG # DGLSELVTVVKRAVQDTLGGLSLKQSLSLLELEQLMGLVRAQVEGSGAEEGASSSGRRPLGWYMMPDEESTLAAQACGLTENDVMTIKLLNETRDMLD # SPDFQTILNTCLNRGFSRFLDNLAEFFRPPPAKSNPGSMPDSLSQVSLPLAKIIPIVNGQIHSICSEIPSQFVQDLLMIEQVKDFAANVYETFSTPQD # LQQ] # end gene g192 ### # # ----- sequence number 181 (length = 10325, name = scaffold_15_15848941-15859265) ----- # # annotation: # Sequence scaffold_15_15848941-15859265 length=10325 scaffold_15_15848941-15859265 database start_codon 601 603 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 691 1983 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 2116 2206 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 2229 2336 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 2426 2511 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 2590 2915 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 3027 3129 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 3202 4794 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 4900 5024 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 5148 5259 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 5348 5434 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 5494 5640 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 5732 5816 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 5956 6044 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 6208 6359 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 6396 6480 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 6549 6747 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 6819 8234 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 8280 8362 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 8407 8562 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 8632 9044 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database intron 9334 9456 . + . transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 601 690 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 1984 2115 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 2207 2228 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 2337 2425 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 2512 2589 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 2916 3026 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 3130 3201 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 4795 4899 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 5025 5147 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 5260 5347 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 5435 5493 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 5641 5731 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 5817 5955 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 6045 6207 . + 1 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 6360 6395 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 6481 6548 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 6748 6818 . + 1 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 8235 8279 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 8363 8406 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 8563 8631 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 9045 9333 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database CDS 9457 9725 . + 2 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; scaffold_15_15848941-15859265 database stop_codon 9723 9725 . + 0 transcript_id "g_829-T1.1"; gene_id "g_829-T1"; # Predicted genes for sequence number 181 on both strands # start gene g193 scaffold_15_15848941-15859265 AUGUSTUS gene 1248 9725 0.06 + . g193 scaffold_15_15848941-15859265 AUGUSTUS transcript 1248 9725 0.06 + . g193.t1 scaffold_15_15848941-15859265 AUGUSTUS start_codon 1248 1250 . + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 1263 2206 0.94 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 2229 2336 0.93 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 2426 2511 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 2590 2915 0.89 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 3027 3129 0.89 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 3202 3643 0.51 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 3812 4398 0.47 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 4501 4794 0.73 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 4900 5024 0.99 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 5148 5259 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 5348 5434 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 5494 5640 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 5732 5816 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 5956 6044 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 6208 6359 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 6396 6480 1 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 6549 6747 0.99 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 6819 7493 0.99 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 7608 8234 0.68 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 8280 8362 0.68 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 8407 8562 0.81 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 8632 9044 0.59 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS intron 9334 9456 0.96 + . transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 1248 1262 0.93 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 2207 2228 0.93 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 2337 2425 0.96 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 2512 2589 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 2916 3026 0.89 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 3130 3201 0.98 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 3644 3811 0.47 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 4399 4500 0.56 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 4795 4899 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 5025 5147 0.99 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 5260 5347 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 5435 5493 1 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 5641 5731 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 5817 5955 1 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 6045 6207 1 + 1 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 6360 6395 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 6481 6548 1 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 6748 6818 0.99 + 1 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 7494 7607 0.99 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 8235 8279 0.68 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 8363 8406 1 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 8563 8631 0.59 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 9045 9333 0.86 + 0 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS CDS 9457 9725 0.95 + 2 transcript_id "g193.t1"; gene_id "g193"; scaffold_15_15848941-15859265 AUGUSTUS stop_codon 9723 9725 . + 0 transcript_id "g193.t1"; gene_id "g193"; # protein sequence = [MASLMVRPTQYLVEDKDIQKHLDEVTKEDTAVLAKMEELKAQREDLRNQQKMSKESADSALERVKELEIALKEVEARN # ELLVEECDSIMRTVDGERAKYLAHVDKSANYEKNISKLQRSMKKTQDALAKRSVQSMEVLQETGQYVRGRGGGRRRAATQQEGHYLCLCARRSTARAL # QNYLQQATNTVKELADALVHVWEEIPQETIRHLIRSMPRRCRESKDLMEESKIREGARTTLHQCLQRDHAALKEENSSLKNTAKDLEDKNRQLCEQIK # VFIKSQKEYEDTIAQKDHSNEVLTELLVDLEAYDLQKSDAKAVANGEASTVANRASSVKKRIKQLMDVSQVQTTLSVVEEERNRFQTKLQNEERDRKA # LEEKYRELEHNSTSLKSEKSLIENQLKILQQKYEIMTEMYQQKEISLQRRLTDEELERRDKEMKLSEVDGRALEAEQEVKIYRQRIKEMEEEVKKTEK # ALKVQIAEQERKAHENWVAANTAERSLSQEKTLRRNLRERLAALSNQLNDLRAANSIHPAARCGDSYGPSPVSGGAPSPPLMIEGPGRPLSAPIGRRI # DPYGHRPPFEKHTVPNRPDPGPRTSSPTNMDDSQPDPTQSESLETGNEISTECSEPSSRPQGPGSFLESPIRDPGPLLHGPPPPPFAHGYRPPPPPHL # PPGIRQANGTEGMASTEFRYRPSPNGHPAIMGTRLGPLLGPPPMRFPSNMPHHPGPVFGGGPPGPYPPYHQDLRFPGPWDYGVPSQHLPPGCGPPPPQ # DGRPQANPSPQDLPGPAQPSGGQGQDCISQQAAAPDPVRSAMSEP] # end gene g193 ### # # ----- sequence number 182 (length = 6824, name = scaffold_15_15887178-15894001) ----- # # annotation: # Sequence scaffold_15_15887178-15894001 length=6824 scaffold_15_15887178-15894001 database start_codon 601 603 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database intron 921 3107 . + . transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database intron 3211 4209 . + . transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database intron 4421 4946 . + . transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database intron 5036 5738 . + . transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database intron 5988 6158 . + . transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 601 920 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 3108 3210 . + 1 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 4210 4420 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 4947 5035 . + 2 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 5739 5987 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database CDS 6159 6224 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; scaffold_15_15887178-15894001 database stop_codon 6222 6224 . + 0 transcript_id "g_831-T1.1"; gene_id "g_831-T1"; # Predicted genes for sequence number 182 on both strands # start gene g194 scaffold_15_15887178-15894001 AUGUSTUS gene 3790 5996 0.53 + . g194 scaffold_15_15887178-15894001 AUGUSTUS transcript 3790 5996 0.53 + . g194.t1 scaffold_15_15887178-15894001 AUGUSTUS start_codon 3790 3792 . + 0 transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS intron 3802 4209 0.57 + . transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS intron 4421 4946 1 + . transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS intron 5036 5738 0.99 + . transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS CDS 3790 3801 0.57 + 0 transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS CDS 4210 4420 1 + 0 transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS CDS 4947 5035 1 + 2 transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS CDS 5739 5996 0.92 + 0 transcript_id "g194.t1"; gene_id "g194"; scaffold_15_15887178-15894001 AUGUSTUS stop_codon 5994 5996 . + 0 transcript_id "g194.t1"; gene_id "g194"; # protein sequence = [MALLTPLHLATYLSLPLLVQSLVKKGASQEAQDQDGNTPLHVACEQGLFDCAAELTRNISNRKLAPVLETQNWRGLTC # LHLATLNQHHRLIKLLMKKGADLNVQEGTSGKTALHLAVELHDITAVTLLLTKAANVDAAMFNGCTPLHLAVGRQDTTIAILLCRSGADKMLRNMEDE # TALDLADGNDDVS] # end gene g194 ### # # ----- sequence number 183 (length = 6583, name = scaffold_16_5911841-5918423) ----- # # annotation: # Sequence scaffold_16_5911841-5918423 length=6583 scaffold_16_5911841-5918423 database start_codon 601 603 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 1411 1547 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 1661 1782 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 1979 2544 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 2869 3009 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 3121 3498 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 3670 3835 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 3958 4163 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 4297 5156 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 5289 5496 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database intron 5607 5805 . + . transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 601 1410 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 1548 1660 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 1783 1978 . + 1 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 2545 2868 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 3010 3120 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 3499 3669 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 3836 3957 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 4164 4296 . + 1 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 5157 5288 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 5497 5606 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database CDS 5806 5983 . + 1 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; scaffold_16_5911841-5918423 database stop_codon 5981 5983 . + 0 transcript_id "g_864-T1.1"; gene_id "g_864-T1"; # Predicted genes for sequence number 183 on both strands # start gene g195 scaffold_16_5911841-5918423 AUGUSTUS gene 541 5983 0.33 + . g195 scaffold_16_5911841-5918423 AUGUSTUS transcript 541 5983 0.33 + . g195.t1 scaffold_16_5911841-5918423 AUGUSTUS start_codon 541 543 . + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 1411 1547 0.99 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 1661 1782 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 1979 2544 0.94 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 2869 3009 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 3121 3498 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 3670 3835 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 3958 4163 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 4297 5156 0.65 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 5289 5496 0.96 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS intron 5607 5805 1 + . transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 541 1410 0.53 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 1548 1660 0.99 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 1783 1978 0.94 + 1 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 2545 2868 1 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 3010 3120 1 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 3499 3669 1 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 3836 3957 1 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 4164 4296 1 + 1 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 5157 5288 1 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 5497 5606 0.96 + 0 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS CDS 5806 5983 1 + 1 transcript_id "g195.t1"; gene_id "g195"; scaffold_16_5911841-5918423 AUGUSTUS stop_codon 5981 5983 . + 0 transcript_id "g195.t1"; gene_id "g195"; # protein sequence = [MKTKSRKELRKEKRKLKKTKMKNHYEGYKHLKSENGDVTHPPDKPQLKKKVTEKATKERPSQKPKPAPVEDATVKEQD # PAKTKPQRNPASKKGKKKNKLQESRKKALLEANVIEDREIKKLEKFLGLNKRKNKKSLPQSFTADGLDYILGVLDSGSSATGMYDSDDDMDKAKDNFE # KLNGSDSEMSGEEEDQGDDSDCENSEEESDEDLDIIDEEAEDDQEDGLEEEEDDEDDKMKAEDDQEDGLEEEEEEEDDKMEAEDDGMHENSGLEAEEE # GESGSEVKAPGPKDENTASVAGKYMPPHLRDSGDEKRKVELQRLKRNVKGLVNRLSEANMASICGQLEELYMSSSRRDMNDTLTEVLLAACVTPALLP # DRLLMEHVLLVSVLHHTVGLEIGAHFLETVVRKFDELYKTPSEGKESTNLVAIMAHLYNFQVVHAMLIFDVLKLLGETFTERDIELMLFVLRNVGFSL # RKDDAMALKELITEAQRKASDVGTKFQDQTRVRFMLETMLALKNNNMRKIPGYDPEPVERLKKLQKTLIHQSVGGTDVKLRVSLENLLAADQVGRWWI # VGSCWSGAPMIGARDSQEPKQPTAEGKFSAKVLDQARKQRMNTEIRRNIFCVIMTSEDYMDAFEKLLRMGLKGQQEREIVHVLMDCCLQEKTFNAFYV # VLGEKFCTHDRRFQMTFQFSLWDKFKDLHSLPSSTFSNLVQLVTHFLQKKCLSLSILKVIEFGELDKPKVRFLRQVLTKLLKDTPLEDLESIFGRISG # VPKLGMLREGLKLFISHFLLKNASSRSPAEQAALLSERAQVATKAMEAREAKLKL] # end gene g195 ### # # ----- sequence number 184 (length = 8682, name = scaffold_16_6142340-6151021) ----- # # annotation: # Sequence scaffold_16_6142340-6151021 length=8682 scaffold_16_6142340-6151021 database start_codon 601 603 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 862 1154 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 1330 1452 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 1537 2061 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 2204 2578 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 2670 2834 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 3175 3355 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 3472 3764 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 3936 5593 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 5755 6224 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 6337 6905 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 7086 7167 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 7267 7657 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database intron 7802 8001 . + . transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 601 861 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 1155 1329 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 1453 1536 . + 2 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 2062 2203 . + 2 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 2579 2669 . + 1 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 2835 3174 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 3356 3471 . + 2 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 3765 3935 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 5594 5754 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 6225 6336 . + 1 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 6906 7085 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 7168 7266 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 7658 7801 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database CDS 8002 8082 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; scaffold_16_6142340-6151021 database stop_codon 8080 8082 . + 0 transcript_id "g_868-T1.1"; gene_id "g_868-T1"; # Predicted genes for sequence number 184 on both strands # start gene g196 scaffold_16_6142340-6151021 AUGUSTUS gene 1 2061 0.28 + . g196 scaffold_16_6142340-6151021 AUGUSTUS transcript 1 2061 0.28 + . g196.t1 scaffold_16_6142340-6151021 AUGUSTUS intron 1 757 0.52 + . transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS intron 862 1154 1 + . transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS intron 1330 1452 0.99 + . transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS intron 1537 1870 0.95 + . transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS CDS 758 861 0.52 + 2 transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS CDS 1155 1329 1 + 0 transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS CDS 1453 1536 0.99 + 2 transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS CDS 1871 2061 0.53 + 2 transcript_id "g196.t1"; gene_id "g196"; scaffold_16_6142340-6151021 AUGUSTUS stop_codon 2059 2061 . + 0 transcript_id "g196.t1"; gene_id "g196"; # protein sequence = [AGDESLRLQLSMDPGKLGEFRLSLRDASGTARSVTIADFDLRSVHYEVKSPKCHELSLATPPHDRISFNFRCEQEAQE # WATVMMSSLREAHRVAENHSPEISQLSLEASAAQNSAPVPHTEEMCAELTKAIEDGDMQTASQLAASLARQQAALRIQPSVRSCEETEIRLEEKXLFP # SLCPLGP] # end gene g196 ### # start gene g197 scaffold_16_6142340-6151021 AUGUSTUS gene 2106 8082 0.46 + . g197 scaffold_16_6142340-6151021 AUGUSTUS transcript 2106 8082 0.46 + . g197.t1 scaffold_16_6142340-6151021 AUGUSTUS start_codon 2106 2108 . + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 2204 2578 0.95 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 2670 2834 0.99 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 3175 3355 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 3472 3764 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 3936 5593 0.91 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 5755 6224 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 6337 6905 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 7086 7167 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 7267 7657 1 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS intron 7802 8001 0.94 + . transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 2106 2203 0.53 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 2579 2669 0.99 + 1 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 2835 3174 0.99 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 3356 3471 1 + 2 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 3765 3935 1 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 5594 5754 1 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 6225 6336 1 + 1 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 6906 7085 1 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 7168 7266 1 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 7658 7801 1 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS CDS 8002 8082 0.93 + 0 transcript_id "g197.t1"; gene_id "g197"; scaffold_16_6142340-6151021 AUGUSTUS stop_codon 8080 8082 . + 0 transcript_id "g197.t1"; gene_id "g197"; # protein sequence = [MQTASQLAASLARQQAALRIQPSVRSCEETEISLAVVVEDSSSSCCVTVKVFPHATIAALKQQVFLEYGFHPRVQRWV # ISQCLCTDQRSLASYGVRRDGDTAFLYLLTARHSRLTRHLLQQDQESALLLGPPSQTPPSGSHPPPSSLRSSSGGGGGPPQDWRTYSTMPPQLYDNGT # GTKAAGGAEKQNVGELRDLIHLEMPQLNQALTPNKSSSQGWACPSCTYINKPTRPGCEICSTERPESYMIPGSYRPDPLELRRIQQEKEAVRQYQLAK # ESERRENFARLVMLDGQDLIPNPDCVDCRICYLDLQPGQGVLLRECLHCFCRDCLRSVILLCDDPEVACPYRDDTYACDSTLQEREIRALVSEEEYER # WLQRGLSVAESRCEGSYHCASPDCPGWCVYEDTVNIFHCPVCNKHNCLLCKAIHEGMNCRQYQDDLTARAVNDSAARRTRDLLKTLVRSGEAMHCPQC # GIIVQKKEGCDWLRCTVCHTEICWVTRGPRWGPGGPGDTSGGCRCNVNKQRCHPKCQNCH] # end gene g197 ### # # ----- sequence number 185 (length = 4584, name = scaffold_16_7051676-7056259) ----- # # annotation: # Sequence scaffold_16_7051676-7056259 length=4584 scaffold_16_7051676-7056259 database start_codon 601 603 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database intron 727 3185 . + . transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database intron 3274 3419 . + . transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database intron 3494 3631 . + . transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database intron 3737 3873 . + . transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database CDS 601 726 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database CDS 3186 3273 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database CDS 3420 3493 . + 2 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database CDS 3632 3736 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database CDS 3874 3984 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; scaffold_16_7051676-7056259 database stop_codon 3982 3984 . + 0 transcript_id "g_871-T1.1"; gene_id "g_871-T1"; # Predicted genes for sequence number 185 on both strands # start gene g198 scaffold_16_7051676-7056259 AUGUSTUS gene 601 4584 0.43 + . g198 scaffold_16_7051676-7056259 AUGUSTUS transcript 601 4584 0.43 + . g198.t1 scaffold_16_7051676-7056259 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 727 2288 0.43 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 2412 3185 0.67 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 3274 3419 1 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 3494 3631 1 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 3737 3873 1 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 3923 4078 0.98 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 4135 4389 1 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS intron 4478 4584 1 + . transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 601 726 0.44 + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 2289 2411 0.44 + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 3186 3273 0.97 + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 3420 3493 1 + 2 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 3632 3736 1 + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 3874 3922 0.98 + 0 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 4079 4134 1 + 2 transcript_id "g198.t1"; gene_id "g198"; scaffold_16_7051676-7056259 AUGUSTUS CDS 4390 4477 1 + 0 transcript_id "g198.t1"; gene_id "g198"; # protein sequence = [MADPAECTIKVMCRFRPLNSSEVARGDKYIPKFQGEDSVQLGTTPMLPPISGPDQLIGWGSLGLIHNQSFSSMSPSRL # LLTTLGKPYMFDRVLQSNTSQEQVYVACAQKIVKDVLDGYNGTIFAYGQTSSGKTHTMEGNLHDPDGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYF # EIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPEEVMDTIDEGKSNRHVAVT] # end gene g198 ### # # ----- sequence number 186 (length = 8400, name = scaffold_16_8455858-8464257) ----- # # annotation: # Sequence scaffold_16_8455858-8464257 length=8400 scaffold_16_8455858-8464257 database start_codon 601 603 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 626 1004 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 2028 2189 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 2352 2477 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 2556 2688 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 2795 3035 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 3108 3209 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 3350 3482 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 3583 3750 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 3969 4301 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 4400 4527 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 4559 4714 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 4798 4941 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 5051 5377 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 5498 5616 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 5697 5797 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 6029 6143 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 6218 6305 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 6408 6540 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 6679 6835 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 6903 7009 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 7156 7411 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database intron 7517 7724 . + . transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 601 625 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 1005 2027 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 2190 2351 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 2478 2555 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 2689 2794 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 3036 3107 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 3210 3349 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 3483 3582 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 3751 3968 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 4302 4399 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 4528 4558 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 4715 4797 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 4942 5050 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 5378 5497 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 5617 5696 . + 2 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 5798 6028 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 6144 6217 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 6306 6407 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 6541 6678 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 6836 6902 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 7010 7155 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 7412 7516 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database CDS 7725 7800 . + 1 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; scaffold_16_8455858-8464257 database stop_codon 7798 7800 . + 0 transcript_id "g_883-T1.1"; gene_id "g_883-T1"; # Predicted genes for sequence number 186 on both strands # start gene g199 scaffold_16_8455858-8464257 AUGUSTUS gene 601 7800 0.15 + . g199 scaffold_16_8455858-8464257 AUGUSTUS transcript 601 7800 0.15 + . g199.t1 scaffold_16_8455858-8464257 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 626 1004 0.9 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 2028 2189 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 2352 2477 0.5 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 2556 2688 0.6 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 2795 3209 0.66 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 3350 3482 0.95 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 3583 3750 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 3969 4301 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 4400 4527 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 4559 4714 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 4798 4941 0.55 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 5051 5377 0.67 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 5498 5616 0.99 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 5697 5797 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 6029 6143 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 6218 6305 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 6408 6504 0.96 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 6679 6835 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 6903 7009 1 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 7156 7411 0.9 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS intron 7517 7724 0.9 + . transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 601 625 0.86 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 1005 2027 0.94 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 2190 2351 0.95 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 2478 2555 0.53 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 2689 2794 1 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 3210 3349 1 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 3483 3582 0.95 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 3751 3968 1 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 4302 4399 1 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 4528 4558 1 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 4715 4797 0.67 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 4942 5050 0.55 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 5378 5497 0.82 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 5617 5696 1 + 2 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 5798 6028 1 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 6144 6217 1 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 6306 6407 1 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 6505 6678 0.96 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 6836 6902 1 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 7010 7155 1 + 0 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 7412 7516 0.9 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS CDS 7725 7800 1 + 1 transcript_id "g199.t1"; gene_id "g199"; scaffold_16_8455858-8464257 AUGUSTUS stop_codon 7798 7800 . + 0 transcript_id "g199.t1"; gene_id "g199"; # protein sequence = [MAEASPVSDSLELNPDGTSRQKHNQHRSRRGRTKPDHNRNLSGHNNYGPPPQHSPFHEDSNPYAHYSSTFPGHSYPPF # QREDRDAPRGRGRGRGRGVNGGGGGGHGFGPGRQAPRWQRPGGDIGLSGGYRGGAGYRPATPPAERPDIDGSSWRRDPGLSDMKAPSEDHQDTRPKKP # RRFSQEPRQGEVGNRNQRAAHPFSKKENQENRAAAGGGGGRGGWEPREDDCSYDTGNRHQQGRRGEGGGNTFTDPRKKFPEPKRRQGPIKEPNQAERE # PERGASAQDSSAYDGEGNGRGNGAVEEQSWKKGRGQGRRTPLQDRGQRRPPHPDHRFGPGQMKRDPLPKNKETQTGCLIEQLSEEKYECMVCCEIIRV # MAPVWNCQSCYHVFHLNCIKKWARSPASQADESTEGWRCPACQNVVYKPPNSYICFCGKVTNPEWQRTEIPHSCGDMCGKKRSGADCNHPCNIQPMRC # GQATSIHCDTVCGATLNCSQHTCSQVCHSGQCQPCQLQVQQVCYCGVATRQVPCGTDKEAFDTSGHFSCQKACGKMLECQAHRCQQVCHPGPCQPCPR # SPRLVKSCPCGQTALAKLLELGYSERRVCSDPIPSCGQICNKPLACGSNESIHLCDQLCHEDSCGPCSLTSTVRCRCGSKTKEVPCATIDNEGQLVFS # CEKRCTKKRQCGRHKCGEPCCVAVEHKCSLICGGKLTCGLHRCQEVCHRGNCLPCWQTSFDELACHCGNSILFPPIACGTKPPECKSLCSRRHECDHP # VFHNCHSEEKCPPCTYLTTRWCMGKHEQRSNIPCHLQDISCGLVCNKMLPCDLHRCRRICHRGECLAESSCRQPCVLPRPDCGHPCSAPCHKGSSCPR # NTCTTKVALQCECGRRKEMVPCTEAASSYQRYAAIAMASRLSDMQLGDSVDIAQFITKKEQKQNRLECDLDCVVSPRLECDLDCAALERNRRLAEALQ # IDVSVDPFNIRSTSKYSDSLRDDARKDFKFVREVEEEIKNLVELVSKGKQPKRSHCFPPMNREHRKIVHELAEAYAVESVSYDSEPKRNVVVTAARGK # SVCPNSTLTSLIERETATRAPPPIAHIKQHSSKGDGGCSWSKMVKEEPVIDYFDVQD] # end gene g199 ### # # ----- sequence number 187 (length = 2015, name = scaffold_16_8552735-8554749) ----- # # annotation: # Sequence scaffold_16_8552735-8554749 length=2015 scaffold_16_8552735-8554749 database start_codon 601 603 . + 0 transcript_id "g_884-T1.1"; gene_id "g_884-T1"; scaffold_16_8552735-8554749 database intron 691 1154 . + . transcript_id "g_884-T1.1"; gene_id "g_884-T1"; scaffold_16_8552735-8554749 database CDS 601 690 . + 0 transcript_id "g_884-T1.1"; gene_id "g_884-T1"; scaffold_16_8552735-8554749 database CDS 1155 1415 . + 0 transcript_id "g_884-T1.1"; gene_id "g_884-T1"; scaffold_16_8552735-8554749 database stop_codon 1413 1415 . + 0 transcript_id "g_884-T1.1"; gene_id "g_884-T1"; # Predicted genes for sequence number 187 on both strands # start gene g200 scaffold_16_8552735-8554749 AUGUSTUS gene 601 1415 0.98 + . g200 scaffold_16_8552735-8554749 AUGUSTUS transcript 601 1415 0.98 + . g200.t1 scaffold_16_8552735-8554749 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g200.t1"; gene_id "g200"; scaffold_16_8552735-8554749 AUGUSTUS intron 691 1154 1 + . transcript_id "g200.t1"; gene_id "g200"; scaffold_16_8552735-8554749 AUGUSTUS CDS 601 690 0.98 + 0 transcript_id "g200.t1"; gene_id "g200"; scaffold_16_8552735-8554749 AUGUSTUS CDS 1155 1415 1 + 0 transcript_id "g200.t1"; gene_id "g200"; scaffold_16_8552735-8554749 AUGUSTUS stop_codon 1413 1415 . + 0 transcript_id "g200.t1"; gene_id "g200"; # protein sequence = [MSRNYLSKDNELSKGDYLLSNNRDWKAVFQDDGNFVIYGWKPFWTSDTPNLNPERLCMQGDCNLVMYNKEDSPVWHTN # TSKTSCNMCCIQLTDEGNLVLKKDGEKIWSSAHSTGMK] # end gene g200 ### # # ----- sequence number 188 (length = 4397, name = scaffold_16_10083841-10088237) ----- # # annotation: # Sequence scaffold_16_10083841-10088237 length=4397 scaffold_16_10083841-10088237 database start_codon 601 603 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 655 984 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 1159 1319 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 1452 1839 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 1966 2195 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 2360 3201 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database intron 3338 3743 . + . transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 601 654 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 985 1158 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 1320 1451 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 1840 1965 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 2196 2359 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 3202 3337 . + 1 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database CDS 3744 3797 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; scaffold_16_10083841-10088237 database stop_codon 3795 3797 . + 0 transcript_id "g_892-T1.1"; gene_id "g_892-T1"; # Predicted genes for sequence number 188 on both strands # start gene g201 scaffold_16_10083841-10088237 AUGUSTUS gene 1 3797 0.49 + . g201 scaffold_16_10083841-10088237 AUGUSTUS transcript 1 3797 0.49 + . g201.t1 scaffold_16_10083841-10088237 AUGUSTUS intron 1 504 0.95 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 655 984 1 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 1159 1319 1 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 1452 1839 0.64 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 1966 2195 0.99 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 2360 3201 1 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS intron 3338 3743 0.78 + . transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 505 654 1 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 985 1158 1 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 1320 1451 1 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 1840 1965 0.64 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 2196 2359 0.99 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 3202 3337 1 + 1 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS CDS 3744 3797 0.76 + 0 transcript_id "g201.t1"; gene_id "g201"; scaffold_16_10083841-10088237 AUGUSTUS stop_codon 3795 3797 . + 0 transcript_id "g201.t1"; gene_id "g201"; # protein sequence = [EQYVFIHDAILEACLCGDTTIPANQLRSVYYDMNRLDPQTNSSQIKEEFRTLNMVTPTLRVEDCSIALLPRNHEKNRC # MDVLPPDRCLPFLITIDGESSNYINAALMDSYKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTSIVMLNDVDPAQLCPQYWPENGVHRHGPIQVEFVSA # DLEEDIISRIFRIYNAARPQDGYRMVQQFQFLGWPMYRDTPVSKRSFLKLIRQVEKWQEEYDGGEGRTVVHCLNGGGRSGSFCAISIVCEMLQHQRSV # DVFHAVKTLRNNKPNMVDLLDQYKFCYEVALEYLNSG] # end gene g201 ### # # ----- sequence number 189 (length = 2156, name = scaffold_16_10448973-10451128) ----- # # annotation: # Sequence scaffold_16_10448973-10451128 length=2156 scaffold_16_10448973-10451128 database start_codon 601 603 . + 0 transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database intron 605 850 . + . transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database intron 995 1365 . + . transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database CDS 601 604 . + 0 transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database CDS 851 994 . + 2 transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database CDS 1366 1556 . + 2 transcript_id "g_893-T1.1"; gene_id "g_893-T1"; scaffold_16_10448973-10451128 database stop_codon 1554 1556 . + 0 transcript_id "g_893-T1.1"; gene_id "g_893-T1"; # Predicted genes for sequence number 189 on both strands # start gene g202 scaffold_16_10448973-10451128 AUGUSTUS gene 601 1556 0.93 + . g202 scaffold_16_10448973-10451128 AUGUSTUS transcript 601 1556 0.93 + . g202.t1 scaffold_16_10448973-10451128 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS intron 605 850 0.93 + . transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS intron 995 1365 1 + . transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS CDS 601 604 0.95 + 0 transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS CDS 851 994 0.98 + 2 transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS CDS 1366 1556 1 + 2 transcript_id "g202.t1"; gene_id "g202"; scaffold_16_10448973-10451128 AUGUSTUS stop_codon 1554 1556 . + 0 transcript_id "g202.t1"; gene_id "g202"; # protein sequence = [MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT # YKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC] # end gene g202 ### # # ----- sequence number 190 (length = 3852, name = scaffold_17_5691459-5695310) ----- # # annotation: # Sequence scaffold_17_5691459-5695310 length=3852 scaffold_17_5691459-5695310 database start_codon 601 603 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 724 906 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 1037 1778 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 1848 2377 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 2435 2548 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 2617 2793 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database intron 2917 3165 . + . transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 601 723 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 907 1036 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 1779 1847 . + 2 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 2378 2434 . + 2 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 2549 2616 . + 2 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 2794 2916 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database CDS 3166 3252 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; scaffold_17_5691459-5695310 database stop_codon 3250 3252 . + 0 transcript_id "g_940-T1.1"; gene_id "g_940-T1"; # Predicted genes for sequence number 190 on both strands # start gene g203 scaffold_17_5691459-5695310 AUGUSTUS gene 601 3252 0.42 + . g203 scaffold_17_5691459-5695310 AUGUSTUS transcript 601 3252 0.42 + . g203.t1 scaffold_17_5691459-5695310 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS intron 724 906 0.99 + . transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS intron 1037 1778 0.94 + . transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS intron 1848 2548 0.76 + . transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS intron 2617 2793 0.99 + . transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS intron 2917 3165 1 + . transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 601 723 0.59 + 0 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 907 1036 1 + 0 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 1779 1847 0.99 + 2 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 2549 2616 1 + 2 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 2794 2916 0.99 + 0 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS CDS 3166 3252 1 + 0 transcript_id "g203.t1"; gene_id "g203"; scaffold_17_5691459-5695310 AUGUSTUS stop_codon 3250 3252 . + 0 transcript_id "g203.t1"; gene_id "g203"; # protein sequence = [MAGRGGRGRGRSQLTFSLEDVGIGKGETLPPTTFAPSPLFPPMAAQPVPLQTGEEMDYMLALKQELRAATKNLPFYIR # RAASKRDVDRYSDKYQTGEPKDGTIDWNPGPVAQVKRPKKTVAKEEILTKLETLEKKEETANSEEEEDEEEKKKTGEEEEPAEEEFDEEDIEEDTDYI # MSYFDNGEEFGADSDDNMDEATY] # end gene g203 ### # # ----- sequence number 191 (length = 3151, name = scaffold_17_7670168-7673318) ----- # # annotation: # Sequence scaffold_17_7670168-7673318 length=3151 scaffold_17_7670168-7673318 database start_codon 601 603 . + 0 transcript_id "g_952-T1.1"; gene_id "g_952-T1"; scaffold_17_7670168-7673318 database intron 1362 2067 . + . transcript_id "g_952-T1.1"; gene_id "g_952-T1"; scaffold_17_7670168-7673318 database CDS 601 1361 . + 0 transcript_id "g_952-T1.1"; gene_id "g_952-T1"; scaffold_17_7670168-7673318 database CDS 2068 2551 . + 1 transcript_id "g_952-T1.1"; gene_id "g_952-T1"; scaffold_17_7670168-7673318 database stop_codon 2549 2551 . + 0 transcript_id "g_952-T1.1"; gene_id "g_952-T1"; # Predicted genes for sequence number 191 on both strands # start gene g204 scaffold_17_7670168-7673318 AUGUSTUS gene 601 2551 0.99 + . g204 scaffold_17_7670168-7673318 AUGUSTUS transcript 601 2551 0.99 + . g204.t1 scaffold_17_7670168-7673318 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g204.t1"; gene_id "g204"; scaffold_17_7670168-7673318 AUGUSTUS intron 1362 2067 1 + . transcript_id "g204.t1"; gene_id "g204"; scaffold_17_7670168-7673318 AUGUSTUS CDS 601 1361 1 + 0 transcript_id "g204.t1"; gene_id "g204"; scaffold_17_7670168-7673318 AUGUSTUS CDS 2068 2551 0.99 + 1 transcript_id "g204.t1"; gene_id "g204"; scaffold_17_7670168-7673318 AUGUSTUS stop_codon 2549 2551 . + 0 transcript_id "g204.t1"; gene_id "g204"; # protein sequence = [MSELQSAPAVAASPQRKPSTNKNIKKLRAISMVCSLTRSWQQWVSENEDKQTSEPTGWAPDVLRGLGEEPKKLDGSKT # GPSEKKARPSQNPSADSLNTEHQQDSASPTQTSPEVSGESRIKTKQVSKTVMSSAQEKSTGIALLTERICKDSLPQGEEIDRILNKRSSPTRRRKCSN # MVSALTSSWKEVEKERKQGRSYSVDTEDSGFSEERSPEAEGGLVAGARAFGESDSGDNSLPEGHAESSVRIKRSSVPVVKKEAEDAHKINALSKKYSA # VGSLKSRWQNWASDHSETQKLNPFSEDFDYEYSMSTRLRKGEEGYGRPKEGTKTAERAKRAEKHIHGEINDMCYIIRTMADADPDGKTRVTFGELFDR # YVRISDKVVGILMRARKHGKLTFEGEMLWQGQDDAVVITLLV] # end gene g204 ### # # ----- sequence number 192 (length = 1789, name = scaffold_17_9526882-9528670) ----- # # annotation: # Sequence scaffold_17_9526882-9528670 length=1789 scaffold_17_9526882-9528670 database start_codon 601 603 . + 0 transcript_id "g_969-T1.1"; gene_id "g_969-T1"; scaffold_17_9526882-9528670 database intron 839 944 . + . transcript_id "g_969-T1.1"; gene_id "g_969-T1"; scaffold_17_9526882-9528670 database CDS 601 838 . + 0 transcript_id "g_969-T1.1"; gene_id "g_969-T1"; scaffold_17_9526882-9528670 database CDS 945 1189 . + 2 transcript_id "g_969-T1.1"; gene_id "g_969-T1"; scaffold_17_9526882-9528670 database stop_codon 1187 1189 . + 0 transcript_id "g_969-T1.1"; gene_id "g_969-T1"; # Predicted genes for sequence number 192 on both strands # start gene g205 scaffold_17_9526882-9528670 AUGUSTUS gene 1 545 0.34 + . g205 scaffold_17_9526882-9528670 AUGUSTUS transcript 1 545 0.34 + . g205.t1 scaffold_17_9526882-9528670 AUGUSTUS intron 1 260 0.39 + . transcript_id "g205.t1"; gene_id "g205"; scaffold_17_9526882-9528670 AUGUSTUS CDS 261 545 0.34 + 0 transcript_id "g205.t1"; gene_id "g205"; scaffold_17_9526882-9528670 AUGUSTUS stop_codon 543 545 . + 0 transcript_id "g205.t1"; gene_id "g205"; # protein sequence = [VLSNILNEGCWLNIGCVPVVSCQASCSFSLLSSSYYPLPFNSACRKDVPRSQGSSEQGPKPPSGRSNNSQLSASDRLL # FFTYNPSKLAQLLPKA] # end gene g205 ### # start gene g206 scaffold_17_9526882-9528670 AUGUSTUS gene 601 1189 0.38 + . g206 scaffold_17_9526882-9528670 AUGUSTUS transcript 601 1189 0.38 + . g206.t1 scaffold_17_9526882-9528670 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g206.t1"; gene_id "g206"; scaffold_17_9526882-9528670 AUGUSTUS intron 839 944 1 + . transcript_id "g206.t1"; gene_id "g206"; scaffold_17_9526882-9528670 AUGUSTUS CDS 601 838 0.38 + 0 transcript_id "g206.t1"; gene_id "g206"; scaffold_17_9526882-9528670 AUGUSTUS CDS 945 1189 1 + 2 transcript_id "g206.t1"; gene_id "g206"; scaffold_17_9526882-9528670 AUGUSTUS stop_codon 1187 1189 . + 0 transcript_id "g206.t1"; gene_id "g206"; # protein sequence = [MLGALLRRNMSQKLSMLLLLFGLAWGLMLLRYTVQQPQHQSSAELRQQILELSRRYVKVLTEENQNAAGGPQGTSMAG # YADLKRTIAVLLDDILTRLVKLEGKVDLVANSSATNTSHPAGGALSSAPAALHKATKQETPDSHLETPQLPAHTPNRAHQGV] # end gene g206 ### # # ----- sequence number 193 (length = 3433, name = scaffold_17_10054513-10057945) ----- # # annotation: # Sequence scaffold_17_10054513-10057945 length=3433 scaffold_17_10054513-10057945 database start_codon 601 603 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 712 959 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 1090 1207 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 1302 1411 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 1578 1698 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 1822 1938 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 2060 2163 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 2247 2355 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 2418 2548 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database intron 2653 2783 . + . transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 601 711 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 960 1089 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 1208 1301 . + 2 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 1412 1577 . + 1 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 1699 1821 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 1939 2059 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 2164 2246 . + 2 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 2356 2417 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 2549 2652 . + 1 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database CDS 2784 2833 . + 2 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; scaffold_17_10054513-10057945 database stop_codon 2831 2833 . + 0 transcript_id "g_976-T1.1"; gene_id "g_976-T1"; # Predicted genes for sequence number 193 on both strands # start gene g207 scaffold_17_10054513-10057945 AUGUSTUS gene 601 2833 0.39 + . g207 scaffold_17_10054513-10057945 AUGUSTUS transcript 601 2833 0.39 + . g207.t1 scaffold_17_10054513-10057945 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 712 959 0.99 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 1090 1207 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 1302 1411 0.68 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 1578 1698 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 1822 1938 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 2060 2163 0.98 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 2247 2355 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 2418 2548 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS intron 2653 2783 1 + . transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 601 711 0.65 + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 960 1089 0.99 + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 1208 1301 1 + 2 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 1412 1577 0.68 + 1 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 1699 1821 1 + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 1939 2059 0.98 + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 2164 2246 1 + 2 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 2356 2417 1 + 0 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 2549 2652 1 + 1 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS CDS 2784 2833 1 + 2 transcript_id "g207.t1"; gene_id "g207"; scaffold_17_10054513-10057945 AUGUSTUS stop_codon 2831 2833 . + 0 transcript_id "g207.t1"; gene_id "g207"; # protein sequence = [MIEPKKRPGDMALVPTEVKRPRTDLVAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEVYCCKFHPNGATLASSGYDR # LILMWNVYGDCDNFATLKGHTGAVMELHYNTDGSMLFSASTDKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGA # VHTFQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYSMHGHGDSLTGLSLSSEGSYLLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNF # EKNLLRCSWSNDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ] # end gene g207 ### # # ----- sequence number 194 (length = 2765, name = scaffold_17_11509700-11512464) ----- # # annotation: # Sequence scaffold_17_11509700-11512464 length=2765 scaffold_17_11509700-11512464 database start_codon 601 603 . + 0 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database intron 707 871 . + . transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database intron 988 1124 . + . transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database intron 1269 1427 . + . transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database CDS 601 706 . + 0 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database CDS 872 987 . + 2 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database CDS 1125 1268 . + 0 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database CDS 1428 2165 . + 0 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; scaffold_17_11509700-11512464 database stop_codon 2163 2165 . + 0 transcript_id "g_980-T1.1"; gene_id "g_980-T1"; # Predicted genes for sequence number 194 on both strands # start gene g208 scaffold_17_11509700-11512464 AUGUSTUS gene 601 2165 0.95 + . g208 scaffold_17_11509700-11512464 AUGUSTUS transcript 601 2165 0.95 + . g208.t1 scaffold_17_11509700-11512464 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS intron 707 871 1 + . transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS intron 988 1124 0.99 + . transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS intron 1269 1427 0.96 + . transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS CDS 601 706 1 + 0 transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS CDS 872 987 1 + 2 transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS CDS 1125 1268 0.97 + 0 transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS CDS 1428 2165 0.98 + 0 transcript_id "g208.t1"; gene_id "g208"; scaffold_17_11509700-11512464 AUGUSTUS stop_codon 2163 2165 . + 0 transcript_id "g208.t1"; gene_id "g208"; # protein sequence = [MELDMLKIEQVVVGEDVSSTETIKPDPVITPSLQPYQHDSLQCFQCFITFCNSKAKERHMRKSHREEYKQQLQQTDTL # FTCYVCDRTFPSSEELTQHQASHSQEDKPFRCPYCQGSFRTFSELTVHRRNLCTERNSVCRECHMVFRGPAHLRTHRLSQHPQPLEEPDDDAMTHRCG # KCGRGFKTEEELVQHQEDFAGDQHCNAKPQAKRRGRPPKKVVEAVPAEGEVSGEEKSVEAEEGAALEEGGKESPAKGGKRKGRPPKQPQAEELKIPCP # ELGCTLTFPSLSLFRAHKKEKHAKPPPPRKAYPCTECEESYARSEQLKAHMARAHGSGRHNCPTCGKSFGRESNLKAHQKTHTEEEETDKGKR] # end gene g208 ### # # ----- sequence number 195 (length = 3219, name = scaffold_17_13958579-13961797) ----- # # annotation: # Sequence scaffold_17_13958579-13961797 length=3219 scaffold_17_13958579-13961797 database start_codon 601 603 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database intron 771 1172 . + . transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database intron 1282 1377 . + . transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database intron 1489 1583 . + . transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database intron 1695 1877 . + . transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database intron 2026 2419 . + . transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 601 770 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 1173 1281 . + 1 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 1378 1488 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 1584 1694 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 1878 2025 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database CDS 2420 2619 . + 2 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; scaffold_17_13958579-13961797 database stop_codon 2617 2619 . + 0 transcript_id "g_992-T1.1"; gene_id "g_992-T1"; # Predicted genes for sequence number 195 on both strands # start gene g209 scaffold_17_13958579-13961797 AUGUSTUS gene 601 2619 0.78 + . g209 scaffold_17_13958579-13961797 AUGUSTUS transcript 601 2619 0.78 + . g209.t1 scaffold_17_13958579-13961797 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS intron 771 1172 1 + . transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS intron 1282 1377 1 + . transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS intron 1489 1583 0.81 + . transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS intron 1695 1877 1 + . transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS intron 2026 2419 1 + . transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 601 770 0.97 + 0 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 1173 1281 1 + 1 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 1378 1488 0.99 + 0 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 1584 1694 0.82 + 0 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 1878 2025 1 + 0 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS CDS 2420 2619 1 + 2 transcript_id "g209.t1"; gene_id "g209"; scaffold_17_13958579-13961797 AUGUSTUS stop_codon 2617 2619 . + 0 transcript_id "g209.t1"; gene_id "g209"; # protein sequence = [MLSVRALFGIGVLVTSRTALVHSHKGTCPPASVYNNPNKECFSRRSSTMAQSIKYLGQEEAQRIDEELFSEYGFSVDQ # LMELAGLSCATAVARAYPTSSLVKARPSLLVICGPGNNGGDGLVCARHLKLFGYEPTILYPKRPSKPLFQGLTRQCEKMEIPFLTEMPEAEVVDEAYN # LVVDAIFGFSFQGAVREPFASILDVLKEITVPVASIDIPSGWDVEKGAPGGLQPDMLISLTAPKKSATFFQGRYHYLGGRFVPPSLEQKYQLNLPQYP # DTDCVFKL] # end gene g209 ### # # ----- sequence number 196 (length = 5717, name = scaffold_18_811896-817612) ----- # # annotation: # Sequence scaffold_18_811896-817612 length=5717 scaffold_18_811896-817612 database start_codon 601 603 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 721 866 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 984 1144 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 1312 1506 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 1620 1766 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 1818 2045 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 2191 2326 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 2479 2973 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 3031 3405 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 3483 3562 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 3662 4137 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database intron 4211 5013 . + . transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 601 720 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 867 983 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 1145 1311 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 1507 1619 . + 1 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 1767 1817 . + 2 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 2046 2190 . + 2 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 2327 2478 . + 1 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 2974 3030 . + 2 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 3406 3482 . + 2 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 3563 3661 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 4138 4210 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database CDS 5014 5117 . + 2 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; scaffold_18_811896-817612 database stop_codon 5115 5117 . + 0 transcript_id "g_1006-T1.1"; gene_id "g_1006-T1"; # Predicted genes for sequence number 196 on both strands # start gene g210 scaffold_18_811896-817612 AUGUSTUS gene 601 5117 0.46 + . g210 scaffold_18_811896-817612 AUGUSTUS transcript 601 5117 0.46 + . g210.t1 scaffold_18_811896-817612 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 721 866 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 984 1144 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 1312 1506 0.99 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 1620 1766 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 1818 2045 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 2191 2326 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 2479 2973 0.54 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 3031 3405 0.96 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 3483 3562 0.99 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 3662 4137 1 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS intron 4211 5013 0.98 + . transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 601 720 1 + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 867 983 1 + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 1145 1311 0.99 + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 1507 1619 0.99 + 1 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 1767 1817 1 + 2 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 2046 2190 1 + 2 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 2327 2478 1 + 1 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 2974 3030 0.56 + 2 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 3406 3482 0.98 + 2 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 3563 3661 1 + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 4138 4210 1 + 0 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS CDS 5014 5117 0.9 + 2 transcript_id "g210.t1"; gene_id "g210"; scaffold_18_811896-817612 AUGUSTUS stop_codon 5115 5117 . + 0 transcript_id "g210.t1"; gene_id "g210"; # protein sequence = [MSLYDDLGVASDAKTEGWSKNFKLLQSQLKVKKAALTQAKTQRMKQTTVLAPVIDLKRGGSSDERQILDTPPHIAAGL # KEAVPSGFSSGDVLIPLADEYDPMFPNDYEKVVKRQREERQKQREHERLKEIEEREKKRKDRHEGSVPSGFSRFPAAEGESDEEEDYEKERRKRALGG # AAIAPPSSLVDRDVSFSSSFPYEEEGRPPRGSKAAIPPPMYEDSERPRSPPGPTNTFLANMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTS # KRGGKIIIGDAAEKPGSSQSAAVEPTAQGSGPSADASKKSDANPLTEILKCPTKVVLLRNMVGRGEVDEDLEGETKEECEKYGKVIKCVIFEIALVTD # DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLGEQV] # end gene g210 ### # # ----- sequence number 197 (length = 3315, name = scaffold_18_3701507-3704821) ----- # # annotation: # Sequence scaffold_18_3701507-3704821 length=3315 scaffold_18_3701507-3704821 database start_codon 601 603 . + 0 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database intron 740 1064 . + . transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database intron 1295 1642 . + . transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database intron 1716 1823 . + . transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database intron 1915 2078 . + . transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database intron 2189 2335 . + . transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 601 739 . + 0 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 1065 1294 . + 2 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 1643 1715 . + 0 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 1824 1914 . + 2 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 2079 2188 . + 1 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database CDS 2336 2715 . + 2 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; scaffold_18_3701507-3704821 database stop_codon 2713 2715 . + 0 transcript_id "g_1022-T1.1"; gene_id "g_1022-T1"; # Predicted genes for sequence number 197 on both strands # start gene g211 scaffold_18_3701507-3704821 AUGUSTUS gene 676 2715 0.87 + . g211 scaffold_18_3701507-3704821 AUGUSTUS transcript 676 2715 0.87 + . g211.t1 scaffold_18_3701507-3704821 AUGUSTUS start_codon 676 678 . + 0 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS intron 740 1064 0.89 + . transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS intron 1295 1642 1 + . transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS intron 1716 1823 1 + . transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS intron 1915 2078 1 + . transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS intron 2189 2335 1 + . transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 676 739 0.95 + 0 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 1065 1294 0.91 + 2 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 1643 1715 1 + 0 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 1824 1914 1 + 2 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 2079 2188 1 + 1 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS CDS 2336 2715 1 + 2 transcript_id "g211.t1"; gene_id "g211"; scaffold_18_3701507-3704821 AUGUSTUS stop_codon 2713 2715 . + 0 transcript_id "g211.t1"; gene_id "g211"; # protein sequence = [MFGVGTTGSKDKAFDPRYNRKAGPGPGPGAVRGQPVSMKSPPASKAQTLENMQQMKMMMEQEMKSDKYKPNSNKGYVF # TLMPLYAIGVGLFAAYKFLKIKSADYTNVQKSKVAKGAKKSEETESQLTELEQRLAQTEKMLNSILTQLDPLTNCVKSVAQEQKKEIMSQLQTIRHLM # KKRGMDCPPLNIEEPSCERNLDDLIESLAAHETLPEEDTSETKPQGGAEEEGAWESTHLPPPSVQETEETHTGAEEQNQLENVEREKEEVAAEEDDEN # IGDKELMPSLECSSGANVEDLGLVQNFAEEPSGLRRRNRPE] # end gene g211 ### # # ----- sequence number 198 (length = 5148, name = scaffold_18_3776008-3781155) ----- # # annotation: # Sequence scaffold_18_3776008-3781155 length=5148 scaffold_18_3776008-3781155 database start_codon 601 603 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 685 1047 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 1186 1468 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 1556 1685 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 1816 2003 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 2203 2369 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 2450 2642 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 2756 2848 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 2993 3162 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 3324 3504 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 3591 3886 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 3976 4137 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database intron 4214 4483 . + . transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 601 684 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 1048 1185 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 1469 1555 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 1686 1815 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 2004 2202 . + 2 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 2370 2449 . + 1 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 2643 2755 . + 2 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 2849 2992 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 3163 3323 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 3505 3590 . + 1 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 3887 3975 . + 2 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 4138 4213 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database CDS 4484 4548 . + 2 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; scaffold_18_3776008-3781155 database stop_codon 4546 4548 . + 0 transcript_id "g_1023-T1.1"; gene_id "g_1023-T1"; # Predicted genes for sequence number 198 on both strands # start gene g212 scaffold_18_3776008-3781155 AUGUSTUS gene 601 4548 0.45 + . g212 scaffold_18_3776008-3781155 AUGUSTUS transcript 601 4548 0.45 + . g212.t1 scaffold_18_3776008-3781155 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 685 1047 0.84 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 1123 1468 0.47 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 1556 1685 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 1816 2003 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 2203 2369 0.99 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 2450 2642 0.99 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 2756 2848 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 2993 3162 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 3324 3504 0.99 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 3591 3886 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 3976 4137 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS intron 4214 4483 1 + . transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 601 684 0.96 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 1048 1122 0.47 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 1469 1555 1 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 1686 1815 1 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 2004 2202 1 + 2 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 2370 2449 0.98 + 1 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 2643 2755 1 + 2 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 2849 2992 1 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 3163 3323 1 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 3505 3590 0.99 + 1 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 3887 3975 1 + 2 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 4138 4213 1 + 0 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS CDS 4484 4548 1 + 2 transcript_id "g212.t1"; gene_id "g212"; scaffold_18_3776008-3781155 AUGUSTUS stop_codon 4546 4548 . + 0 transcript_id "g212.t1"; gene_id "g212"; # protein sequence = [MATSLQRFASAGRYLVNRNVFKIGTFTKPIIKPHRVQSTQAAHQVVLNVPETKVGLWIDAGSRYENERNNGTAHFLEH # MAFKGTRKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSMLGESEIERERGVILREMQEVETNLQEVVFDYLHATAYQ # TTALGRTILGPTENIKTINRGDLVEYITTHYKGPRIVLAAAGGVCHNELIDLAKYHFGKLPARYKGEAPTLPACNFTGSEIRVRDDKMPLAHIAIAIE # AVGWSHPDTIPLMVANTLIGNWDRSFGGGVNLSSKMAQMACQGNLCHSFQSFNTCYTDTGLWGLYMVCEPGTINEMMHLTQLEWMALCTSVTENEVAR # AKNLLKTNMLLHLDGSTPICEDIGRQMLCYSRRIPLHELEARIDAIDAKTIKDVCTKYIYDKPPAIAAVGPIEQLPDYNRIRSGMYWMRP] # end gene g212 ### # start gene g213 scaffold_18_3776008-3781155 AUGUSTUS gene 4770 5148 0.85 - . g213 scaffold_18_3776008-3781155 AUGUSTUS transcript 4770 5148 0.85 - . g213.t1 scaffold_18_3776008-3781155 AUGUSTUS stop_codon 4770 4772 . - 0 transcript_id "g213.t1"; gene_id "g213"; scaffold_18_3776008-3781155 AUGUSTUS intron 4839 4926 1 - . transcript_id "g213.t1"; gene_id "g213"; scaffold_18_3776008-3781155 AUGUSTUS intron 5082 5148 0.85 - . transcript_id "g213.t1"; gene_id "g213"; scaffold_18_3776008-3781155 AUGUSTUS CDS 4770 4838 1 - 0 transcript_id "g213.t1"; gene_id "g213"; scaffold_18_3776008-3781155 AUGUSTUS CDS 4927 5081 0.85 - 2 transcript_id "g213.t1"; gene_id "g213"; # protein sequence = [SDANAASWTGEEQKLLEQALKTYPVSTPERWEKIAAAVPGRTKKDCMKRYKELVEMVKAKKAAQEQVGGKIKK] # end gene g213 ### # # ----- sequence number 199 (length = 6742, name = scaffold_18_4829256-4835997) ----- # # annotation: # Sequence scaffold_18_4829256-4835997 length=6742 scaffold_18_4829256-4835997 database start_codon 601 603 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 632 1280 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 1379 1508 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 1657 1902 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 1999 2481 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 2617 3188 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 3318 4691 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 4805 5206 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database intron 5357 6085 . + . transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 601 631 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 1281 1378 . + 2 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 1509 1656 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 1903 1998 . + 2 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 2482 2616 . + 2 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 3189 3317 . + 2 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 4692 4804 . + 2 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 5207 5356 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database CDS 6086 6142 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; scaffold_18_4829256-4835997 database stop_codon 6140 6142 . + 0 transcript_id "g_1080-T1.1"; gene_id "g_1080-T1"; # Predicted genes for sequence number 199 on both strands # start gene g214 scaffold_18_4829256-4835997 AUGUSTUS gene 622 6142 0.54 + . g214 scaffold_18_4829256-4835997 AUGUSTUS transcript 622 6142 0.54 + . g214.t1 scaffold_18_4829256-4835997 AUGUSTUS start_codon 622 624 . + 0 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 632 1280 0.91 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 1379 1508 1 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 1657 1902 0.96 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 1999 2481 0.99 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 2617 3188 1 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 3318 4691 1 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 4805 5206 1 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS intron 5357 6085 0.99 + . transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 622 631 0.57 + 0 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 1281 1378 1 + 2 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 1509 1656 0.97 + 0 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 1903 1998 0.99 + 2 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 2482 2616 1 + 2 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 3189 3317 1 + 2 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 4692 4804 1 + 2 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 5207 5356 0.99 + 0 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS CDS 6086 6142 1 + 0 transcript_id "g214.t1"; gene_id "g214"; scaffold_18_4829256-4835997 AUGUSTUS stop_codon 6140 6142 . + 0 transcript_id "g214.t1"; gene_id "g214"; # protein sequence = [MDLDLEWVSKVRVNTQAVLKRAQQIQGHKLAKKQWQAAWLLRAVTCIDLTTLAGDDTPSNVHRLCLKATQPVRQDLLR # SMDMHDKGVTTAAVCVYPSRVADAVKSLKSANSSLPVASVATGFPAGQTPLKTRLEEVRMAVEDGAMEIDIVINRTLALTGQWQAMYDEIRQFRAACG # EAHMKSILAIGELGTYTNVYKASLVAMMAGSDFIKTSTGKEAVNATYPVAIVMVRAIRDYFLRTGHKVGFKPAGGIRTAQESLVWLTLMKEELGDEWL # HPQLFRLGASSLLADIERQIYHYVTGRYAAYHELPMA] # end gene g214 ### # # ----- sequence number 200 (length = 4549, name = scaffold_18_10359931-10364479) ----- # # annotation: # Sequence scaffold_18_10359931-10364479 length=4549 scaffold_18_10359931-10364479 database start_codon 601 603 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 707 1024 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 1170 1277 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 1428 1592 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 1669 1917 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 2076 2219 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 2350 2602 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 2707 3386 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database intron 3577 3802 . + . transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 601 706 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 1025 1169 . + 2 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 1278 1427 . + 1 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 1593 1668 . + 1 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 1918 2075 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 2220 2349 . + 1 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 2603 2706 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 3387 3576 . + 1 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database CDS 3803 3949 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; scaffold_18_10359931-10364479 database stop_codon 3947 3949 . + 0 transcript_id "g_1070-T1.1"; gene_id "g_1070-T1"; # Predicted genes for sequence number 200 on both strands # start gene g215 scaffold_18_10359931-10364479 AUGUSTUS gene 1 3949 0.87 + . g215 scaffold_18_10359931-10364479 AUGUSTUS transcript 1 3949 0.87 + . g215.t1 scaffold_18_10359931-10364479 AUGUSTUS intron 1 189 0.98 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 322 591 0.99 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 707 1024 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 1170 1277 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 1428 1592 0.99 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 1669 1917 0.91 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 2076 2219 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 2350 2602 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 2707 3386 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS intron 3577 3802 1 + . transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 190 321 1 + 0 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 592 706 0.99 + 0 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 1025 1169 1 + 2 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 1278 1427 1 + 1 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 1593 1668 0.99 + 1 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 1918 2075 0.91 + 0 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 2220 2349 1 + 1 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 2603 2706 1 + 0 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 3387 3576 1 + 1 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS CDS 3803 3949 1 + 0 transcript_id "g215.t1"; gene_id "g215"; scaffold_18_10359931-10364479 AUGUSTUS stop_codon 3947 3949 . + 0 transcript_id "g215.t1"; gene_id "g215"; # protein sequence = [AERQSLRLQLERLESELQQSHEHNTHLTSRLHKAERETNSLSNQVEGMRHSHKLEVSNVKLQCARARGEVERERDCLQ # AQIEGLQSDVEVLKGTVERQKELQVEREREAVRRVQAAREEEFHKTAALHEEKLELENRLAELEQQRAMQEASERALKEEWEERLRSAQQGEESVRKE # VQSLRSRLQQQASQQEEQERLRSENTDLRQQTQDQEMQLATLAHSEGELQEASQRLRDTLERVREELRNARSQAERSQHEAERLVEERRVEWLEEKHK # LQEREAEFQEKYSQAKEKLQRAALAQKKRKTLTENKEKRYQDKIQLMEAKIAELELQTKAATKRPSYSEEHAALNCRLKELQRRHGEFRRLLLGNQMT # STPGHTLMTSTHGPVLVPGSDEPFLILQEEQHQRDLCLLRRRLEELECSQQQQLEELEATERRDRSPGRSEPQLEL] # end gene g215 ### # # ----- sequence number 201 (length = 4692, name = scaffold_19_6685663-6690354) ----- # # annotation: # Sequence scaffold_19_6685663-6690354 length=4692 scaffold_19_6685663-6690354 database start_codon 601 603 . + 0 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database intron 698 869 . + . transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database intron 916 2375 . + . transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database intron 2540 2822 . + . transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database intron 2894 3012 . + . transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database CDS 601 697 . + 0 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database CDS 870 915 . + 2 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database CDS 2376 2539 . + 1 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database CDS 2823 2893 . + 2 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database CDS 3013 4092 . + 0 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; scaffold_19_6685663-6690354 database stop_codon 4090 4092 . + 0 transcript_id "g_1108-T1.1"; gene_id "g_1108-T1"; # Predicted genes for sequence number 201 on both strands # start gene g216 scaffold_19_6685663-6690354 AUGUSTUS gene 2069 4092 0.51 + . g216 scaffold_19_6685663-6690354 AUGUSTUS transcript 2069 4092 0.51 + . g216.t1 scaffold_19_6685663-6690354 AUGUSTUS start_codon 2069 2071 . + 0 transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS intron 2131 2375 0.51 + . transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS intron 2540 2822 1 + . transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS intron 2894 3012 1 + . transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS CDS 2069 2130 0.51 + 0 transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS CDS 2376 2539 1 + 1 transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS CDS 2823 2893 1 + 2 transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS CDS 3013 4092 1 + 0 transcript_id "g216.t1"; gene_id "g216"; scaffold_19_6685663-6690354 AUGUSTUS stop_codon 4090 4092 . + 0 transcript_id "g216.t1"; gene_id "g216"; # protein sequence = [MGPCSDIVHSKNKSPPRIVINLHLTTFCLQHKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYLDRSVTLQLLDELT # HEFLQILEKTPSRLKRIRNWRATQAAKKPKTDFQSGDNAFQGTSSMDSIPGVTSNSFFPSTSMSDSGDMLSLDGAGASYGSYPALGDPSDACGFDQGP # PFPSLVSHSKYTPSKQEHKAGSGGEKHPLPSNPPPFPRPQKMTLDRYREKHAADLALHNGREEQPGELYLSPTPSGHHHHHHHHHKKRSQPQQAPPAG # ERRDKASSKKTRPPPSFAENGSASSEELKMRIKVSSERSHNASEQGGATHSRDKHKDHSGHRHPKHGHSHPYAVSSNGRGGADGATLAFRGPAGHSSD # SGSSSSRKRGHPDSSHHHHHHSAKSSRSSKYAGGSAHYASESSQRTVERHGHDGTNGTLGSNGQHTDYKDTFDMLDSLLSAQGMNL] # end gene g216 ### # # ----- sequence number 202 (length = 3822, name = scaffold_19_9183441-9187262) ----- # # annotation: # Sequence scaffold_19_9183441-9187262 length=3822 scaffold_19_9183441-9187262 database start_codon 601 603 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 761 1033 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 1109 1191 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 1227 1415 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 1517 1640 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 1677 1799 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 1852 1961 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 2082 2229 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 2397 2810 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database intron 2974 3105 . + . transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 601 760 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1034 1108 . + 2 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1192 1226 . + 2 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1416 1516 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1641 1676 . + 1 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1800 1851 . + 1 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 1962 2081 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 2230 2396 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 2811 2973 . + 1 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database CDS 3106 3222 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; scaffold_19_9183441-9187262 database stop_codon 3220 3222 . + 0 transcript_id "g_1127-T1.1"; gene_id "g_1127-T1"; # Predicted genes for sequence number 202 on both strands # start gene g217 scaffold_19_9183441-9187262 AUGUSTUS gene 601 3222 0.47 + . g217 scaffold_19_9183441-9187262 AUGUSTUS transcript 601 3222 0.47 + . g217.t1 scaffold_19_9183441-9187262 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 761 1033 0.94 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 1109 1191 0.68 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 1227 1439 0.73 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 1517 1799 1 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 1852 1961 1 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 2082 2229 0.91 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 2397 2810 1 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS intron 2974 3105 1 + . transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 601 760 0.72 + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 1034 1108 0.94 + 2 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 1192 1226 0.73 + 2 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 1440 1516 0.73 + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 1800 1851 1 + 1 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 1962 2081 0.91 + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 2230 2396 1 + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 2811 2973 1 + 1 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS CDS 3106 3222 1 + 0 transcript_id "g217.t1"; gene_id "g217"; scaffold_19_9183441-9187262 AUGUSTUS stop_codon 3220 3222 . + 0 transcript_id "g217.t1"; gene_id "g217"; # protein sequence = [MGATVSCCMSPGGSPKIQRREYELEEYPITTTEDVSEDTGTYLQHISDREVPDELAHESNPSDHPRASTIFLNKSQTD # VREKRKSNYLNHKYSSCSTIFIDDSTVSQPNLKSTVKWDSNRSVDIFDEKKHPLTREKVPDDYSSVDPEHKLIYRFVRTLFSSAQLTAECAIVTLVYL # ERLLTYAEMDICPCNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDMTVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADENNLSFPLEPL # SNKRAQKLEAISRLCEDMYKDMGKTTMKRSLSVDNLVGVRNTHAVLS] # end gene g217 ### # # ----- sequence number 203 (length = 7482, name = scaffold_19_9451127-9458608) ----- # # annotation: # Sequence scaffold_19_9451127-9458608 length=7482 scaffold_19_9451127-9458608 database start_codon 601 603 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 694 1218 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 1315 1496 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 1605 2229 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 2316 2453 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 2530 2622 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 2679 2896 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 2930 3433 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 3477 6050 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 6087 6220 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 6278 6390 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database intron 6493 6780 . + . transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 601 693 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 1219 1314 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 1497 1604 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 2230 2315 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 2454 2529 . + 1 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 2623 2678 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 2897 2929 . + 1 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 3434 3476 . + 1 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 6051 6086 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 6221 6277 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 6391 6492 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database CDS 6781 6882 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; scaffold_19_9451127-9458608 database stop_codon 6880 6882 . + 0 transcript_id "g_1128-T1.1"; gene_id "g_1128-T1"; # Predicted genes for sequence number 203 on both strands # start gene g218 scaffold_19_9451127-9458608 AUGUSTUS gene 1 6882 0.15 + . g218 scaffold_19_9451127-9458608 AUGUSTUS transcript 1 6882 0.15 + . g218.t1 scaffold_19_9451127-9458608 AUGUSTUS intron 1 202 0.75 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 284 407 0.98 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 463 598 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 721 955 0.36 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 995 1218 0.77 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 1315 1496 0.99 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 1605 1875 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 1969 2229 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 2316 2453 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 2530 2622 0.83 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 2679 2896 0.89 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 2930 3433 0.88 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 3477 3719 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 3858 4214 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 4311 5204 0.68 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 5628 6050 0.95 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 6087 6220 0.95 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 6278 6390 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS intron 6493 6780 1 + . transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 203 283 0.98 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 408 462 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 599 720 0.77 + 2 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 956 994 0.42 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 1219 1314 0.99 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 1497 1604 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 1876 1968 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 2230 2315 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 2454 2529 0.84 + 1 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 2623 2678 0.82 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 2897 2929 0.89 + 1 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 3434 3476 1 + 1 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 3720 3857 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 4215 4310 0.7 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 5205 5627 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 6051 6086 0.95 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 6221 6277 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 6391 6492 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS CDS 6781 6882 1 + 0 transcript_id "g218.t1"; gene_id "g218"; scaffold_19_9451127-9458608 AUGUSTUS stop_codon 6880 6882 . + 0 transcript_id "g218.t1"; gene_id "g218"; # protein sequence = [VLQKLGKADETRDTAFEEGVTNFNKQMLEGGKLQKDLKAYLLAVKTMHEASRRLQDCLADMYEPDWFGKEEIDAMAEV # GRTGTLVQKEMIEKEMDNNLEDTDSLWSDYYQKLMDQSVVSMDTYLAQFPDVKARIAKRDRKLVDYDSARHHFASLQKGKKKDDVKMAKPMSVLEKAA # PGWAQGMLSAHHVAQTNLSRSQAEEELARAQKVFEEINVDLQDELPALWNSRVGFYVNTFQGMAGYQEKFHKEMAKLNMNLNDIMTKLDEQRLVKKGA # KTGTPVKSEGANHNATCDSPTKPTQLRPGPPSRPPPRVTPTQDLKQENIINLFEEAMVPDANPDPAPQHCVPSVGASLLDMDLDVLQAASYHAPQVGL # PKGEQPPATEEPYDYAQEEGLEREAAQAATQAFAQPSWDTEPSWDADEPAAPQSYTQPSWDEAEEGQGAQPGWGEDGPQEIESEGGWGDDGGAQVGLG # EEAGATGWAVEGQTGWAVEGQTGWANSDGQPQWEHIADGEGELASTDSADAAADTAGSPVTNGSDGVDMPEGFTFKVKAMHDYAATDGDELDMKAGDV # VLVIAFDNPDEQDDGWLMGVKEDHWLQKKDTSIKGVFPENFTQRL] # end gene g218 ### # # ----- sequence number 204 (length = 4550, name = scaffold_19_10276244-10280793) ----- # # annotation: # Sequence scaffold_19_10276244-10280793 length=4550 scaffold_19_10276244-10280793 database start_codon 601 603 . + 0 transcript_id "g_1134-T1.1"; gene_id "g_1134-T1"; scaffold_19_10276244-10280793 database intron 3291 3439 . + . transcript_id "g_1134-T1.1"; gene_id "g_1134-T1"; scaffold_19_10276244-10280793 database CDS 601 3290 . + 0 transcript_id "g_1134-T1.1"; gene_id "g_1134-T1"; scaffold_19_10276244-10280793 database CDS 3440 3950 . + 1 transcript_id "g_1134-T1.1"; gene_id "g_1134-T1"; scaffold_19_10276244-10280793 database stop_codon 3948 3950 . + 0 transcript_id "g_1134-T1.1"; gene_id "g_1134-T1"; # Predicted genes for sequence number 204 on both strands # start gene g219 scaffold_19_10276244-10280793 AUGUSTUS gene 601 3950 0.72 + . g219 scaffold_19_10276244-10280793 AUGUSTUS transcript 601 3950 0.72 + . g219.t1 scaffold_19_10276244-10280793 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g219.t1"; gene_id "g219"; scaffold_19_10276244-10280793 AUGUSTUS intron 3291 3439 1 + . transcript_id "g219.t1"; gene_id "g219"; scaffold_19_10276244-10280793 AUGUSTUS CDS 601 3290 0.98 + 0 transcript_id "g219.t1"; gene_id "g219"; scaffold_19_10276244-10280793 AUGUSTUS CDS 3440 3950 0.74 + 1 transcript_id "g219.t1"; gene_id "g219"; scaffold_19_10276244-10280793 AUGUSTUS stop_codon 3948 3950 . + 0 transcript_id "g219.t1"; gene_id "g219"; # protein sequence = [MASPQTTGGHLLSNITNSSNNIKKCGYLKKQKHGHRRFFVLREPSEGFSARLEYYESEKKWKNKSAPKRLITLDSCLC # VNKRADAKHKHLIALYTKDEYFAVAAENEQEQEDWYTVLTDLITEGKLYDSPASTSSLVGFEEANYGMITPATATYKEVWQVNLKSKGLGQSKNLTGV # YRLCLSSRTISFVKLNSETAAVSLQLMNIRRCGHSDSFFFIEVGRSAVTGPGELWMQADDSVVAQNIHETILEAMKAMKELSEFRPRSKSQSASTNPI # SVPTRRNLNNLPPSQTGLVRRSRTDSIAATSPVRKFTSCRIRTASEGDGSMTRPVSMSISMNGSPTTTSSGQNHLSRSHTLSSGRTCRMLESASNLQH # SRSMPMSNSPPSVCSPISLSPRAANISTPDTVQRPFSCSASISGSLSDAGFMLCEEYGSSPCDTKYLPITRSDTPDSLSSTPPSQEANDPCGYMMMDR # PNGSRRVGGGEFLASDKAYRKRTYSLTTPRQQRVPAQLSSASLDEYTLMRAARSDHNSQSASPKVSYPEDYGDIEIGSSRSSSSNLADDGYMPMTPGV # APQGGKGDNYMPMSPMCVSAPKQIINPRVHSQSSGGNYRTNSPSGSSLEDSGYMRMWCGSKSSTESLDSRLPNGEYMNMSPGNPHPLQTPPDYFLGPL # PGEPAVKPTYSANSLPRPTKAQVLKTEESDQYVLMSPQNQRPAVGESDYYSVMGSAAQVAALNSSVPSPIRQIRVENLTHRGRIGRPNRLSLDTFRTL # PSMNEHPLPGEPRSPGEYINIDFSGSKYSPPSASTESQSSSLGSSGSRRRSPLSDYMNVELGSHSPKTGRNPVGRLDVLPEPSMCPHPEEIREYHVSG # KRGPECPTDKVKDDYTEMTFGMANTPPQLLPTPASPSVREKRPSPEEQDVPGMGVFLLEAAPTVDPDRSAKVIRADPQGRRRHSSETFSSTATVTPVF # PSFAHEAKRHSSVENISSRSSEGSDEECSGSPMSRKTSAGYQTGLNYIALNLLENRDMEPCEDLVGFKPTSSCKGGINGLHATPYVCLGFKETATTAK # GECGLCLC] # end gene g219 ### # # ----- sequence number 205 (length = 2488, name = scaffold_19_10624649-10627136) ----- # # annotation: # Sequence scaffold_19_10624649-10627136 length=2488 scaffold_19_10624649-10627136 database start_codon 601 603 . + 0 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database intron 896 1042 . + . transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database intron 1310 1396 . + . transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database intron 1550 1721 . + . transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database CDS 601 895 . + 0 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database CDS 1043 1309 . + 2 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database CDS 1397 1549 . + 2 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database CDS 1722 1888 . + 2 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; scaffold_19_10624649-10627136 database stop_codon 1886 1888 . + 0 transcript_id "g_1135-T1.1"; gene_id "g_1135-T1"; # Predicted genes for sequence number 205 on both strands # start gene g220 scaffold_19_10624649-10627136 AUGUSTUS gene 601 1888 1 + . g220 scaffold_19_10624649-10627136 AUGUSTUS transcript 601 1888 1 + . g220.t1 scaffold_19_10624649-10627136 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS intron 896 1042 1 + . transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS intron 1310 1396 1 + . transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS intron 1550 1721 1 + . transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS CDS 601 895 1 + 0 transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS CDS 1043 1309 1 + 2 transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS CDS 1397 1549 1 + 2 transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS CDS 1722 1888 1 + 2 transcript_id "g220.t1"; gene_id "g220"; scaffold_19_10624649-10627136 AUGUSTUS stop_codon 1886 1888 . + 0 transcript_id "g220.t1"; gene_id "g220"; # protein sequence = [MEDVLVPKECGDAGVSQSAGSHEERNVEMGAMLWSVQEAVERQTLQIGASACGATAVVDVLQALGCTVAPETADRCVR # TCLRRNEAPLPDYLHSRSHAGATHSQLIEGAEQASGGRVLGRFYHLHPRRRVRLVPWLAQWIRRGAVPVATMNMQQAVPEGDEIPDAWHHQLIFGVGP # NAVYMTNPLDVVSEREVHQRLCSESVLLIRREDVMQRLTADTLLSSISDGQCDPRWRAMDVEGQVKQMMSEESHCDAQPRMTHVCIPAAYSSGITLFA # LRSSALGQELLLTPDLPLL] # end gene g220 ### # # ----- sequence number 206 (length = 3428, name = scaffold_19_12017094-12020521) ----- # # annotation: # Sequence scaffold_19_12017094-12020521 length=3428 scaffold_19_12017094-12020521 database start_codon 601 603 . + 0 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database intron 798 1783 . + . transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database intron 1906 2038 . + . transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database intron 2169 2719 . + . transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database CDS 601 797 . + 0 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database CDS 1784 1905 . + 1 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database CDS 2039 2168 . + 2 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database CDS 2720 2828 . + 1 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; scaffold_19_12017094-12020521 database stop_codon 2826 2828 . + 0 transcript_id "g_1146-T1.1"; gene_id "g_1146-T1"; # Predicted genes for sequence number 206 on both strands # start gene g221 scaffold_19_12017094-12020521 AUGUSTUS gene 1770 2828 1 + . g221 scaffold_19_12017094-12020521 AUGUSTUS transcript 1770 2828 1 + . g221.t1 scaffold_19_12017094-12020521 AUGUSTUS start_codon 1770 1772 . + 0 transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS intron 1906 2038 1 + . transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS intron 2169 2719 1 + . transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS CDS 1770 1905 1 + 0 transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS CDS 2039 2168 1 + 2 transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS CDS 2720 2828 1 + 1 transcript_id "g221.t1"; gene_id "g221"; scaffold_19_12017094-12020521 AUGUSTUS stop_codon 2826 2828 . + 0 transcript_id "g221.t1"; gene_id "g221"; # protein sequence = [MFFGSSNKVTVHFINRDGEKITAKGSPGDTLLDIVIDQDIDIDGFGACEGTLACSTCHLIFDEDVYKQLGPVTDEEMD # MLDLAYGLTDTSRLGCQICLTKSLDGMTARVPENVADIRQSGDGSS] # end gene g221 ### # # ----- sequence number 207 (length = 4409, name = scaffold_19_12154564-12158972) ----- # # annotation: # Sequence scaffold_19_12154564-12158972 length=4409 scaffold_19_12154564-12158972 database start_codon 601 603 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 779 1088 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 1259 1348 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 1511 1763 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 1918 1990 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 2094 3196 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 3273 3489 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database intron 3689 3850 . + . transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 601 778 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 1089 1258 . + 2 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 1349 1510 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 1764 1917 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 1991 2093 . + 2 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 3197 3272 . + 1 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 3490 3688 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database CDS 3851 3942 . + 2 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; scaffold_19_12154564-12158972 database stop_codon 3940 3942 . + 0 transcript_id "g_1150-T1.1"; gene_id "g_1150-T1"; # Predicted genes for sequence number 207 on both strands # start gene g222 scaffold_19_12154564-12158972 AUGUSTUS gene 1 3942 0.68 + . g222 scaffold_19_12154564-12158972 AUGUSTUS transcript 1 3942 0.68 + . g222.t1 scaffold_19_12154564-12158972 AUGUSTUS intron 58 427 0.74 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 474 617 0.82 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 779 1088 1 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 1259 1348 1 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 1511 1763 1 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 1918 1990 0.97 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 2094 3196 1 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 3273 3489 0.97 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS intron 3689 3850 1 + . transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 1 57 0.74 + 2 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 428 473 0.82 + 2 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 618 778 0.95 + 1 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 1089 1258 1 + 2 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 1349 1510 1 + 0 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 1764 1917 1 + 0 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 1991 2093 0.97 + 2 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 3197 3272 1 + 1 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 3490 3688 0.97 + 0 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS CDS 3851 3942 1 + 2 transcript_id "g222.t1"; gene_id "g222"; scaffold_19_12154564-12158972 AUGUSTUS stop_codon 3940 3942 . + 0 transcript_id "g222.t1"; gene_id "g222"; # protein sequence = [LSFSVAFRERGAQPSVVSGRLQPRQHMTAQFSRDVKRLFVFQLLLGLVFVVSGLIINFLQLLSCVLWPFNRALYRRLN # CRLAYSLWSQLVMTLEWWSGTECTLFTDQPTVDRFGKEHAIIILNHNYEIDFLCGWTISERYGVLGSTKVLAKYELLKVPLIGWTWYFLEIVFCKRKW # EDDRDAVLSGLGNYRDYPEHIWLLLYCEGTRFTKKKHELSMQVADSKGLPHLKHHLLPRTKGFTTSMACLRGTVSAVYDVTLNFRGNKKPSLLSVVRG # DKYMADMKIRRYPVEEIPEDEKECADWLHNLYREKDSLQDYYIKEGRFPGPTITPRRRPWTLLNFLVWAGLLLWPLSSFAWGIILSGNLVLSLAFLGG # LFIASVAMHRLISVSEVKNTGSSYGNQASKKQD] # end gene g222 ### # # ----- sequence number 208 (length = 2387, name = scaffold_19_12207132-12209518) ----- # # annotation: # Sequence scaffold_19_12207132-12209518 length=2387 scaffold_19_12207132-12209518 database start_codon 601 603 . + 0 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database intron 821 1090 . + . transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database intron 1138 1275 . + . transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database intron 1429 1586 . + . transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database CDS 601 820 . + 0 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database CDS 1091 1137 . + 2 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database CDS 1276 1428 . + 0 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database CDS 1587 1787 . + 0 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; scaffold_19_12207132-12209518 database stop_codon 1785 1787 . + 0 transcript_id "g_1152-T1.1"; gene_id "g_1152-T1"; # Predicted genes for sequence number 208 on both strands # start gene g223 scaffold_19_12207132-12209518 AUGUSTUS gene 601 1787 0.93 + . g223 scaffold_19_12207132-12209518 AUGUSTUS transcript 601 1787 0.93 + . g223.t1 scaffold_19_12207132-12209518 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS intron 821 1090 0.99 + . transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS intron 1138 1275 1 + . transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS intron 1429 1586 1 + . transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS CDS 601 820 0.93 + 0 transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS CDS 1091 1137 1 + 2 transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS CDS 1276 1428 1 + 0 transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS CDS 1587 1787 1 + 0 transcript_id "g223.t1"; gene_id "g223"; scaffold_19_12207132-12209518 AUGUSTUS stop_codon 1785 1787 . + 0 transcript_id "g223.t1"; gene_id "g223"; # protein sequence = [MNSLTSEINKFSKTRLKKQSTRVTTVTGRRLIETRGEDGDVLQVEDSSGAAFGFVEDSCLDLQVGVVRPFLLLSSQDA # AHDLDVLRKFKVTHILNVAYGVANPFPHLLHYRTITMLDLPDTDITSYFPEGCAFIEEARAEEGVVLVHCNAGVSRSSSMVIGYLMTKEGLAFNDAFS # QVKAARPSICPNPGFLLQLKNYNPHLQLNH] # end gene g223 ### # # ----- sequence number 209 (length = 4832, name = scaffold_19_12982245-12987076) ----- # # annotation: # Sequence scaffold_19_12982245-12987076 length=4832 scaffold_19_12982245-12987076 database start_codon 601 603 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 656 1394 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 1538 1716 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 1762 1942 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 2053 2260 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 2457 2680 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 2919 3271 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 3496 3656 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database intron 3897 4103 . + . transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 601 655 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 1395 1537 . + 2 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 1717 1761 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 1943 2052 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 2261 2456 . + 1 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 2681 2918 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 3272 3495 . + 2 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 3657 3896 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database CDS 4104 4232 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; scaffold_19_12982245-12987076 database stop_codon 4230 4232 . + 0 transcript_id "g_1166-T1.1"; gene_id "g_1166-T1"; # Predicted genes for sequence number 209 on both strands # start gene g224 scaffold_19_12982245-12987076 AUGUSTUS gene 601 4232 0.61 + . g224 scaffold_19_12982245-12987076 AUGUSTUS transcript 601 4232 0.61 + . g224.t1 scaffold_19_12982245-12987076 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 656 1394 0.87 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 1538 1716 0.98 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 1762 1942 0.98 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 2053 2260 1 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 2457 2680 1 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 2919 3271 0.78 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 3496 3656 1 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS intron 3897 4103 1 + . transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 601 655 0.97 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 1395 1537 1 + 2 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 1717 1761 0.98 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 1943 2052 1 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 2261 2456 1 + 1 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 2681 2918 0.78 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 3272 3495 1 + 2 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 3657 3896 1 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS CDS 4104 4232 0.93 + 0 transcript_id "g224.t1"; gene_id "g224"; scaffold_19_12982245-12987076 AUGUSTUS stop_codon 4230 4232 . + 0 transcript_id "g224.t1"; gene_id "g224"; # protein sequence = [MDPSNRYLLLFGLLAVIIGPCWCSADETRLVTTLFSGYNKVVRPVNHFKEPVVVTVGLQLIQLISVDEVNQIVTSNVR # LKQQWMDVNLKWNPDDYGGIKKIRIPSTDIWRPDLVLYNNADGDFAIVHETKVLLEHTGMITWTPPAIFKSYCEIIVLHFPFDLQNCSMKLGTWTYDG # NLVVVNPDSDRPDLSNFMESGEWVMKDYRSWKHWVYYACCPETPYLDITYHFLMLRLPLYFIVNVIIPCMLFSFLTGLVFYLPTDSGEKMTLSISVLL # SLTVFLLVIVELIPSTSSAVPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHTMPAWVRKIFIDTIPNLMFFSTMKRPSQERQEKAVFPGDIDIS # DISGKPTPAAIPFQSPITKNPDVRSAIEGIKYIAETMKGDEDSNNAAEEWKFVAMVLDHILLCVFMAVCIIGTVGVFVGRLIELNTL] # end gene g224 ### # # ----- sequence number 210 (length = 2090, name = scaffold_20_2737797-2739886) ----- # # annotation: # Sequence scaffold_20_2737797-2739886 length=2090 scaffold_20_2737797-2739886 database start_codon 601 603 . + 0 transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database intron 673 960 . + . transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database intron 1045 1325 . + . transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database CDS 601 672 . + 0 transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database CDS 961 1044 . + 0 transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database CDS 1326 1490 . + 0 transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; scaffold_20_2737797-2739886 database stop_codon 1488 1490 . + 0 transcript_id "g_1316-T1.1"; gene_id "g_1316-T1"; # Predicted genes for sequence number 210 on both strands # start gene g225 scaffold_20_2737797-2739886 AUGUSTUS gene 1 1490 0.94 + . g225 scaffold_20_2737797-2739886 AUGUSTUS transcript 1 1490 0.94 + . g225.t1 scaffold_20_2737797-2739886 AUGUSTUS intron 1 586 0.94 + . transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS intron 673 960 1 + . transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS intron 1045 1325 1 + . transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS CDS 587 672 0.94 + 2 transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS CDS 961 1044 1 + 0 transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS CDS 1326 1490 1 + 0 transcript_id "g225.t1"; gene_id "g225"; scaffold_20_2737797-2739886 AUGUSTUS stop_codon 1488 1490 . + 0 transcript_id "g225.t1"; gene_id "g225"; # protein sequence = [VKGGMAETAESKKEEADYKRLHSFPLIRHTDMPEEMRVETMELCVTACEKFATNNESAAKMIKESMDKKFGSSWHVVI # GEGFGFEVTHEVKNLLYMFFGGSLAVCVWKCS] # end gene g225 ### # # ----- sequence number 211 (length = 4264, name = scaffold_20_8289758-8294021) ----- # # annotation: # Sequence scaffold_20_8289758-8294021 length=4264 scaffold_20_8289758-8294021 database start_codon 601 603 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database intron 1078 1549 . + . transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database intron 1633 1881 . + . transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database intron 2039 2197 . + . transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database intron 2360 2588 . + . transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database intron 2715 3439 . + . transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 601 1077 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 1550 1632 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 1882 2038 . + 1 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 2198 2359 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 2589 2714 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database CDS 3440 3664 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; scaffold_20_8289758-8294021 database stop_codon 3662 3664 . + 0 transcript_id "g_1337-T1.1"; gene_id "g_1337-T1"; # Predicted genes for sequence number 211 on both strands # start gene g226 scaffold_20_8289758-8294021 AUGUSTUS gene 601 4013 0.58 + . g226 scaffold_20_8289758-8294021 AUGUSTUS transcript 601 4013 0.58 + . g226.t1 scaffold_20_8289758-8294021 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 1078 1549 1 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 1633 1881 1 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 2039 2197 1 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 2360 2588 0.89 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 2715 3439 1 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 3661 3832 0.83 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS intron 3847 3969 0.83 + . transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 601 1077 0.81 + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 1550 1632 1 + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 1882 2038 1 + 1 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 2198 2359 0.97 + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 2589 2714 1 + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 3440 3660 0.87 + 0 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 3833 3846 0.83 + 1 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS CDS 3970 4013 0.83 + 2 transcript_id "g226.t1"; gene_id "g226"; scaffold_20_8289758-8294021 AUGUSTUS stop_codon 4011 4013 . + 0 transcript_id "g226.t1"; gene_id "g226"; # protein sequence = [MSFQTYSYRSGGPSSGASTISSRRVGYVSSAPKAHSVYGGGLGGSTRISSSTVRSCGTGFGGGHGGGYGGGYGGGYGG # GYGGGFDLSNAMDQKAVHLNEKATMQNLNDRLATYLEKVRSLEAANSKLELQIREYYEKKGPAAERDYSNYWAIINDLKDKIRGATINNANILLQIDN # SKLAADDFRTKYEHELMMRQSVEADIANLRRLLDQTTLTKADLEMQIEGLQDELAYLKKNHAEELAAMRTQLTGTINVEVDAAPQQDLNRVLEEIRAQ # YEGITDKHRRDQEAWFNEKSAALSKEVAASTETIQTTKTEINDLRRTMQGLEIELQSQLSMKGALENTLGETEARYSAMLAGYQNQINMLEQELSNVR # ASIEQQGQDYKMLLDIKTRLEQEIATYRSLLETEESRPVVTGGKTVVHTTVRTSS] # end gene g226 ### # # ----- sequence number 212 (length = 6867, name = scaffold_20_9890411-9897277) ----- # # annotation: # Sequence scaffold_20_9890411-9897277 length=6867 scaffold_20_9890411-9897277 database start_codon 601 603 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 604 1391 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 1491 1747 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 1845 2696 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 2873 3993 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 4117 4362 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 4540 5198 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 5313 5877 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database intron 5968 6144 . + . transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 601 603 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 1392 1490 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 1748 1844 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 2697 2872 . + 2 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 3994 4116 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 4363 4539 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 5199 5312 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 5878 5967 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database CDS 6145 6267 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; scaffold_20_9890411-9897277 database stop_codon 6265 6267 . + 0 transcript_id "g_1349-T1.1"; gene_id "g_1349-T1"; # Predicted genes for sequence number 212 on both strands # start gene g227 scaffold_20_9890411-9897277 AUGUSTUS gene 1365 6267 0.55 + . g227 scaffold_20_9890411-9897277 AUGUSTUS transcript 1365 6267 0.55 + . g227.t1 scaffold_20_9890411-9897277 AUGUSTUS start_codon 1365 1367 . + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 1491 1747 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 1845 2696 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 2873 3993 0.95 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 4117 4362 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 4540 5198 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 5313 5877 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS intron 5968 6144 1 + . transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 1365 1490 0.58 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 1748 1844 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 2697 2872 0.95 + 2 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 3994 4116 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 4363 4539 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 5199 5312 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 5878 5967 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS CDS 6145 6267 1 + 0 transcript_id "g227.t1"; gene_id "g227"; scaffold_20_9890411-9897277 AUGUSTUS stop_codon 6265 6267 . + 0 transcript_id "g227.t1"; gene_id "g227"; # protein sequence = [MVQCSLLLQADPIRVLVTGAAGQIAYSLLYSIAKGDVFGKDQPIILVLLDIPPMLPVLEGVVMELQDCALPLLKDVIP # TDKVEVGFKDLDAAILVGSMPRKEGMERKDLLKANVAIFKTQGAALEKYAKKTVKVLVVGNPANTNCLIASKSAPSIPKENFSCLTRLDHNRATSQVA # MRCNVSADNVKNVIIWGNHSSTQYPDVHHAKVNIHGKEVSAFDAVKDDSWLKGDFISTVQLRGAAVIKARKLSSAMSAAKAICDHMRDIWFGTREGEF # ISMGVYAGGNSYGIPEDLIYSFPIHIKNKSWTVEDGLPINDFSRAKMDATAAELVEERDTALSFLSQ] # end gene g227 ### # # ----- sequence number 213 (length = 4288, name = scaffold_21_2485328-2489615) ----- # # annotation: # Sequence scaffold_21_2485328-2489615 length=4288 scaffold_21_2485328-2489615 database start_codon 601 603 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 679 1493 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 1666 1776 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 1881 1989 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 2084 2322 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 2427 2757 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 2879 3013 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database intron 3200 3359 . + . transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 601 678 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 1494 1665 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 1777 1880 . + 2 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 1990 2083 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 2323 2426 . + 2 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 2758 2878 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 3014 3199 . + 2 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database CDS 3360 3688 . + 2 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; scaffold_21_2485328-2489615 database stop_codon 3686 3688 . + 0 transcript_id "g_1383-T1.1"; gene_id "g_1383-T1"; # Predicted genes for sequence number 213 on both strands # start gene g228 scaffold_21_2485328-2489615 AUGUSTUS gene 601 3688 0.75 + . g228 scaffold_21_2485328-2489615 AUGUSTUS transcript 601 3688 0.75 + . g228.t1 scaffold_21_2485328-2489615 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 679 1493 0.95 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 1666 1776 1 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 1881 1989 1 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 2084 2322 1 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 2427 2757 0.99 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 2879 3013 0.94 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS intron 3200 3359 0.99 + . transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 601 678 0.8 + 0 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 1494 1665 1 + 0 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 1777 1880 1 + 2 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 1990 2083 1 + 0 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 2323 2426 1 + 2 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 2758 2878 0.98 + 0 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 3014 3199 0.96 + 2 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS CDS 3360 3688 0.99 + 2 transcript_id "g228.t1"; gene_id "g228"; scaffold_21_2485328-2489615 AUGUSTUS stop_codon 3686 3688 . + 0 transcript_id "g228.t1"; gene_id "g228"; # protein sequence = [MMWLTVLSLLLSPHLPASLNISTERTDTESRTSLNQSEADTDELSQALAKNYKTQAGGRGREGCSVPCDITAKLLRDE # KHSLCGHLQQSLVAYGRSTRKLIRDVMEEQQRTLEFLTSQVTELTAKVQTLSSEVQRSNSEMYAIKPVPSHGRDCSDIKDSLGPVVPKIPSGIYIIHP # ENTETAYEVFCEMDYMGGGWTVMQRRTDGLTDFKRPWADYADGFGHLPGEHWLGLRKAFHIVNQKDARFQLHIALVSYDDTTSYASYDDFRLDNETQF # YSIHLGRYAGSAGDAFRGYDQEQNQDTAPFSTSDVDNDGCFPFCTIGNETVESCSAQHQRTGWWFNQCGLANLNSSPREDPRRGGAEEEKAHIRWDTW # TRSGVPHNIRSVTMKIRRITTNN] # end gene g228 ### # # ----- sequence number 214 (length = 2408, name = scaffold_21_2515412-2517819) ----- # # annotation: # Sequence scaffold_21_2515412-2517819 length=2408 scaffold_21_2515412-2517819 database start_codon 601 603 . + 0 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database intron 764 963 . + . transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database intron 1305 1393 . + . transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database intron 1478 1678 . + . transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database CDS 601 763 . + 0 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database CDS 964 1304 . + 2 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database CDS 1394 1477 . + 0 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database CDS 1679 1831 . + 0 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; scaffold_21_2515412-2517819 database stop_codon 1829 1831 . + 0 transcript_id "g_1384-T1.1"; gene_id "g_1384-T1"; # Predicted genes for sequence number 214 on both strands # start gene g229 scaffold_21_2515412-2517819 AUGUSTUS gene 601 1831 0.96 + . g229 scaffold_21_2515412-2517819 AUGUSTUS transcript 601 1831 0.96 + . g229.t1 scaffold_21_2515412-2517819 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS intron 764 963 1 + . transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS intron 1305 1393 1 + . transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS intron 1478 1678 1 + . transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS CDS 601 763 0.96 + 0 transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS CDS 964 1304 1 + 2 transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS CDS 1394 1477 1 + 0 transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS CDS 1679 1831 1 + 0 transcript_id "g229.t1"; gene_id "g229"; scaffold_21_2515412-2517819 AUGUSTUS stop_codon 1829 1831 . + 0 transcript_id "g229.t1"; gene_id "g229"; # protein sequence = [MGGCTGLLLLVCVMGLLSSGQGQGGCTVKEGRPGQTGLPGLDGRPGAKGQKGEPAQVQQTNQEALLKGIRGRQGPPGE # MGPKGYSGDVGPEGFPGVSGPQGPPGGGGTSQNPRPAFSVERKGHILPRYNEKITFQTAITSSPDFKLDQGVFTCKLPGVYYFVFHAMSKVDMCLKLH # SESQEDRKLVFCDYGTGKSQVLTGGVVLTLKQNQKVWLEMYKDQQSSSIHTDTTDKKIVFNGFMLFSGTD] # end gene g229 ### # # ----- sequence number 215 (length = 6366, name = scaffold_21_6433405-6439770) ----- # # annotation: # Sequence scaffold_21_6433405-6439770 length=6366 scaffold_21_6433405-6439770 database start_codon 601 603 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 802 1130 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 1317 1449 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 1632 1740 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 1884 1987 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 2176 2508 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 2659 2760 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 2940 3135 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 3283 3903 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 3989 4266 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 4444 4715 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database intron 4852 5614 . + . transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 601 801 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 1131 1316 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 1450 1631 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 1741 1883 . + 1 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 1988 2175 . + 2 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 2509 2658 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 2761 2939 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 3136 3282 . + 1 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 3904 3988 . + 1 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 4267 4443 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 4716 4851 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database CDS 5615 5766 . + 2 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; scaffold_21_6433405-6439770 database stop_codon 5764 5766 . + 0 transcript_id "g_1408-T1.1"; gene_id "g_1408-T1"; # Predicted genes for sequence number 215 on both strands # start gene g230 scaffold_21_6433405-6439770 AUGUSTUS gene 1149 5766 0.4 + . g230 scaffold_21_6433405-6439770 AUGUSTUS transcript 1149 5766 0.4 + . g230.t1 scaffold_21_6433405-6439770 AUGUSTUS start_codon 1149 1151 . + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 1317 1449 0.98 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 1632 1740 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 1884 1987 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 2176 2508 0.77 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 2659 2760 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 2940 3135 0.91 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 3283 3903 0.97 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 3989 4266 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 4444 4715 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS intron 4852 5614 1 + . transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 1149 1316 0.68 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 1450 1631 1 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 1741 1883 1 + 1 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 1988 2175 0.77 + 2 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 2509 2658 1 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 2761 2939 1 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 3136 3282 0.91 + 1 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 3904 3988 0.97 + 1 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 4267 4443 1 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 4716 4851 1 + 0 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS CDS 5615 5766 0.93 + 2 transcript_id "g230.t1"; gene_id "g230"; scaffold_21_6433405-6439770 AUGUSTUS stop_codon 5764 5766 . + 0 transcript_id "g230.t1"; gene_id "g230"; # protein sequence = [MPVPASYNDITQDYRLRDFVGWVWYEREVVVPQRWLADEGTRVMLRVGSAHYNSVVWVNGVQVTEHEGGHLPFEAEIG # AVVRKGEGVSCRITIAVNNTLTLQTLPPGTIQHMNDRTMYPAGYFVQSTNFDFFNYAGLHRPVLLYTTPKAYVDDITVVTSFSDNIGLVSYTVSVVGS # PSPTVKVTLSDMNGRCVASSTGTSGVLKVVDVNLWWPYLMHENPGYLYSMEVHMTTGEAPVYSDVYALPVGIRTVQVTSTQFLINGKPFYFHGVNKHE # DSDIRGKGLDWALIVKDFNLLKWLGANSFRTSHYPYAEEIMQMCDRHGIVVIDECPGVGIKDIRSFGNASLAHHLVVMEELVRRDKNHASVVMWSVAN # EPASEMPPAGQYFKTVIAHTKSLDQTRPVTYVSSSDYARDKGAPYVDVICVNSYFSWYHDPGHFEVIPIQLKTQFENWYGKYQKPIIQSEYGADAVPG # LHTDPPMMFTEEYQKAVLQSYHDVFDQKRKDYVIGELIWNFADFMTAQTVTRVVGNKKGIFSRQRQPKAGAFLLKERYWRLANETGLLPYWTRYPCLL] # end gene g230 ### # # ----- sequence number 216 (length = 5785, name = scaffold_21_6486622-6492406) ----- # # annotation: # Sequence scaffold_21_6486622-6492406 length=5785 scaffold_21_6486622-6492406 database start_codon 601 603 . + 0 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 659 2895 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 3051 3152 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 3298 3503 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 3711 3856 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 4072 4227 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 4359 4492 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 4621 4764 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database intron 4886 4995 . + . transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 601 658 . + 0 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 2896 3050 . + 2 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 3153 3297 . + 0 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 3504 3710 . + 2 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 3857 4071 . + 2 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 4228 4358 . + 0 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 4493 4620 . + 1 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 4765 4885 . + 2 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database CDS 4996 5185 . + 1 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; scaffold_21_6486622-6492406 database stop_codon 5183 5185 . + 0 transcript_id "g_1409-T1.1"; gene_id "g_1409-T1"; # Predicted genes for sequence number 216 on both strands # start gene g231 scaffold_21_6486622-6492406 AUGUSTUS gene 601 5185 0.62 + . g231 scaffold_21_6486622-6492406 AUGUSTUS transcript 601 5185 0.62 + . g231.t1 scaffold_21_6486622-6492406 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 659 2895 0.79 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 3051 3152 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 3298 3503 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 3711 3856 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 4072 4227 0.9 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 4359 4492 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 4621 4764 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS intron 4886 4995 1 + . transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 601 658 0.73 + 0 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 2896 3050 0.97 + 2 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 3153 3297 1 + 0 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 3504 3710 1 + 2 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 3857 4071 1 + 2 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 4228 4358 0.9 + 0 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 4493 4620 1 + 1 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 4765 4885 1 + 2 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS CDS 4996 5185 1 + 1 transcript_id "g231.t1"; gene_id "g231"; scaffold_21_6486622-6492406 AUGUSTUS stop_codon 5183 5185 . + 0 transcript_id "g231.t1"; gene_id "g231"; # protein sequence = [MALVDKHKVKRQRLDRICEGIRPPILNGPMHPRPLVALLDGRDCTVEMPVLKDVATVAFCDAQSTQEIHEKVLNEAVG # ALMYHTITLSRDDLDKFKGLRIIVRIGSGYDNVDIKAAAELGIAVCNVPATSVEETADTSLCLILNLYRRVTWMHQALREGTRASSVEQIREVAGGAA # RIRGETLGIIGLGRVGQAVALRAKAFGFNVIFYDPYLPDGVERSLGLQRMATLQDLLIHSDCVSLHCSLNEHNHHLINDFTIKQMRQGAFLVNTARGG # LVDEKALAQALKEGRIRGAGLDVHEAEPFSFSQGPLKDAPNLICNPHTSWYSEQASLEAREEAAREVRRAITGRIPDSLKNCVNKEYLMATPQWPGLD # AGAVHSEHNGASAYRFPAGLVGVTAGGLAGAGAAVEGMAAGTLPMAHGIAPVSRPPHTPSPGQPSKAETDRDMPSDQ] # end gene g231 ### # # ----- sequence number 217 (length = 3557, name = scaffold_21_6509351-6512907) ----- # # annotation: # Sequence scaffold_21_6509351-6512907 length=3557 scaffold_21_6509351-6512907 database start_codon 601 603 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 957 1125 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 1295 1434 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 1594 1875 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 2008 2287 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 2376 2628 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database intron 2794 2886 . + . transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 601 956 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 1126 1294 . + 1 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 1435 1593 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 1876 2007 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 2288 2375 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 2629 2793 . + 2 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database CDS 2887 2957 . + 2 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; scaffold_21_6509351-6512907 database stop_codon 2955 2957 . + 0 transcript_id "g_1411-T1.1"; gene_id "g_1411-T1"; # Predicted genes for sequence number 217 on both strands # start gene g232 scaffold_21_6509351-6512907 AUGUSTUS gene 601 2957 0.41 + . g232 scaffold_21_6509351-6512907 AUGUSTUS transcript 601 2957 0.41 + . g232.t1 scaffold_21_6509351-6512907 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 957 1125 1 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 1295 1434 1 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 1594 1875 1 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 2008 2287 1 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 2376 2628 1 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS intron 2794 2886 0.63 + . transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 601 956 0.65 + 0 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 1126 1294 1 + 1 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 1435 1593 1 + 0 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 1876 2007 1 + 0 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 2288 2375 1 + 0 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 2629 2793 0.93 + 2 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS CDS 2887 2957 0.63 + 2 transcript_id "g232.t1"; gene_id "g232"; scaffold_21_6509351-6512907 AUGUSTUS stop_codon 2955 2957 . + 0 transcript_id "g232.t1"; gene_id "g232"; # protein sequence = [MADAEHQFMETSENGNEGEEDLNGTEQPEPDTEEPEAEADDSCTAEGDEVALAADEDEEEEEEAATVEAEEEGEGEEG # EGEGEGEGEGDGGEGEGEGDSQNGAGEGGQINASKGEDDAGKMFVGGLSWDTSKKDLKDYFSKFGEVADCTIKMDSNTGRSRGFGFILFKEAASVDKV # LEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVGGLNPEASEDTIREYFGAFGEIETIELPVDPKFKKRRGFIFITYKDETSVKKCLEKKFHTVEGSKCE # LKIAQPKEVYQQQQYGGRGGRGGRGRGGQTQNWNQGYSNYWNQGYGNQGYGYGSQQGYGNYGGYGNDYYSSGYYGYGGGYDYNQGNTSYGKTPRRGGH # QSSYKPY] # end gene g232 ### # # ----- sequence number 218 (length = 1958, name = scaffold_21_6710928-6712885) ----- # # annotation: # Sequence scaffold_21_6710928-6712885 length=1958 scaffold_21_6710928-6712885 database start_codon 601 603 . + 0 transcript_id "g_1415-T1.1"; gene_id "g_1415-T1"; scaffold_21_6710928-6712885 database intron 724 1019 . + . transcript_id "g_1415-T1.1"; gene_id "g_1415-T1"; scaffold_21_6710928-6712885 database CDS 601 723 . + 0 transcript_id "g_1415-T1.1"; gene_id "g_1415-T1"; scaffold_21_6710928-6712885 database CDS 1020 1358 . + 0 transcript_id "g_1415-T1.1"; gene_id "g_1415-T1"; scaffold_21_6710928-6712885 database stop_codon 1356 1358 . + 0 transcript_id "g_1415-T1.1"; gene_id "g_1415-T1"; # Predicted genes for sequence number 218 on both strands # start gene g233 scaffold_21_6710928-6712885 AUGUSTUS gene 601 1358 0.72 + . g233 scaffold_21_6710928-6712885 AUGUSTUS transcript 601 1358 0.72 + . g233.t1 scaffold_21_6710928-6712885 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g233.t1"; gene_id "g233"; scaffold_21_6710928-6712885 AUGUSTUS intron 724 1019 0.99 + . transcript_id "g233.t1"; gene_id "g233"; scaffold_21_6710928-6712885 AUGUSTUS CDS 601 723 0.72 + 0 transcript_id "g233.t1"; gene_id "g233"; scaffold_21_6710928-6712885 AUGUSTUS CDS 1020 1358 1 + 0 transcript_id "g233.t1"; gene_id "g233"; scaffold_21_6710928-6712885 AUGUSTUS stop_codon 1356 1358 . + 0 transcript_id "g233.t1"; gene_id "g233"; # protein sequence = [MSVNKASVHAKWIIGKVVGTKMQKTAKVRVTRMVLDPYLLKFYNKKKTYFAHDVLQQCTVGDIVLLKALTERRSKHVK # HELAEIVHKVGRGVDPLTGKRVAGTEFLEPLSSHTHHLEQDTTLTEKLQELNISATSSDNSSACTKPASSAGTTV] # end gene g233 ### # # ----- sequence number 219 (length = 3422, name = scaffold_21_7381708-7385129) ----- # # annotation: # Sequence scaffold_21_7381708-7385129 length=3422 scaffold_21_7381708-7385129 database start_codon 601 603 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 696 804 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 888 1009 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 1127 1300 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 1348 1491 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 1570 1704 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 1761 1886 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 1972 2109 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 2215 2393 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 2463 2580 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database intron 2632 2720 . + . transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 601 695 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 805 887 . + 1 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 1010 1126 . + 2 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 1301 1347 . + 2 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 1492 1569 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 1705 1760 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 1887 1971 . + 1 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 2110 2214 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 2394 2462 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 2581 2631 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database CDS 2721 2822 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; scaffold_21_7381708-7385129 database stop_codon 2820 2822 . + 0 transcript_id "g_1418-T1.1"; gene_id "g_1418-T1"; # Predicted genes for sequence number 219 on both strands # start gene g234 scaffold_21_7381708-7385129 AUGUSTUS gene 601 2822 0.31 + . g234 scaffold_21_7381708-7385129 AUGUSTUS transcript 601 2822 0.31 + . g234.t1 scaffold_21_7381708-7385129 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 696 804 0.84 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 888 1300 0.62 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 1348 1491 0.99 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 1570 1704 0.99 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 1761 1886 1 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 1972 2109 1 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 2215 2405 0.64 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 2463 2580 0.95 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS intron 2632 2720 0.97 + . transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 601 695 0.68 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 805 887 0.84 + 1 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 1301 1347 0.92 + 2 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 1492 1569 0.99 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 1705 1760 1 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 1887 1971 1 + 1 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 2110 2214 1 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 2406 2462 0.64 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 2581 2631 0.95 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS CDS 2721 2822 1 + 0 transcript_id "g234.t1"; gene_id "g234"; scaffold_21_7381708-7385129 AUGUSTUS stop_codon 2820 2822 . + 0 transcript_id "g234.t1"; gene_id "g234"; # protein sequence = [MDHSVKEKEAMALIAEADKKIKSHSVLGSLFGGPSRKYEEACDMYVRAANMFKMAKNWSEAISCLANAIDIYTDMGRF # TIAAKHHISIAEVYETELADIEKAIAHYEQASDYYKGEESNSAANKCLLKVATYAAQLEQYQKAIEIYEQIGTYAMDTTLLKYGAKDHFFKAALCHFC # VDMLNAKRYEDMFPAFSDSRECKLVKKLLNAHEEQDVEAFTDAVKDFDSISRLDQWNTTMLLRIKKTIQDDESDLR] # end gene g234 ### # # ----- sequence number 220 (length = 5123, name = scaffold_22_520360-525482) ----- # # annotation: # Sequence scaffold_22_520360-525482 length=5123 scaffold_22_520360-525482 database start_codon 601 603 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 684 785 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 826 971 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 1173 2810 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 2998 3102 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 3216 3546 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 3657 3746 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 3875 3983 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 4070 4153 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database intron 4258 4447 . + . transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 601 683 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 786 825 . + 1 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 972 1172 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 2811 2997 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 3103 3215 . + 2 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 3547 3656 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 3747 3874 . + 1 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 3984 4069 . + 2 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 4154 4257 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database CDS 4448 4523 . + 1 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; scaffold_22_520360-525482 database stop_codon 4521 4523 . + 0 transcript_id "g_1456-T1.1"; gene_id "g_1456-T1"; # Predicted genes for sequence number 220 on both strands # start gene g235 scaffold_22_520360-525482 AUGUSTUS gene 601 4523 0.83 + . g235 scaffold_22_520360-525482 AUGUSTUS transcript 601 4523 0.83 + . g235.t1 scaffold_22_520360-525482 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 684 785 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 826 971 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 1173 2810 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 2998 3102 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 3216 3546 0.99 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 3657 3746 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 3875 3983 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 4070 4153 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS intron 4258 4447 1 + . transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 601 683 0.83 + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 786 825 1 + 1 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 972 1172 1 + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 2811 2997 1 + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 3103 3215 1 + 2 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 3547 3656 0.99 + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 3747 3874 1 + 1 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 3984 4069 1 + 2 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 4154 4257 1 + 0 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS CDS 4448 4523 1 + 1 transcript_id "g235.t1"; gene_id "g235"; scaffold_22_520360-525482 AUGUSTUS stop_codon 4521 4523 . + 0 transcript_id "g235.t1"; gene_id "g235"; # protein sequence = [MDGENQMDELLDDLSLSQGSFKKLWENIPAPTNTWAEFNVTLIPDDALHEDFDEALFELPNTPELLGSPVDNAAPPTS # TVLSTVDHPGQHSFQLRFQDAGITKSVTSTFSPQLNKLYCQLAKTCPIEVLVAVEPPQGAILRATAVYKKAEHVAEVVRRCPHHQKVAENNEGVSHRS # HLIRVEGNQQAQYVEDEHTGRQSVTVLYEPPQLGSEVTTLLLNYMCNSSCMGGMNRRPILTILTLETPEGQVLGRRCFEVRVCACPGRDRKTEEVNAN # KPQNSTKMPGTKRKSQPASATMAKKIKSTNSGSEDDDVFVLRVHGRERYEWLKKVNAGLELMDRQPGADVEKVRLKSLKTAKQETMEPKRGKRLLLRD # SSE] # end gene g235 ### # # ----- sequence number 221 (length = 4774, name = scaffold_22_7782111-7786884) ----- # # annotation: # Sequence scaffold_22_7782111-7786884 length=4774 scaffold_22_7782111-7786884 database start_codon 601 603 . + 0 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 674 1685 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 2007 2171 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 2433 2571 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 2665 3060 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 3129 3800 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database intron 3879 4087 . + . transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 601 673 . + 0 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 1686 2006 . + 2 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 2172 2432 . + 2 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 2572 2664 . + 2 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 3061 3128 . + 2 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 3801 3878 . + 0 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database CDS 4088 4174 . + 0 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; scaffold_22_7782111-7786884 database stop_codon 4172 4174 . + 0 transcript_id "g_1485-T1.1"; gene_id "g_1485-T1"; # Predicted genes for sequence number 221 on both strands # start gene g236 scaffold_22_7782111-7786884 AUGUSTUS gene 1877 4174 0.49 + . g236 scaffold_22_7782111-7786884 AUGUSTUS transcript 1877 4174 0.49 + . g236.t1 scaffold_22_7782111-7786884 AUGUSTUS start_codon 1877 1879 . + 0 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS intron 2007 2171 0.94 + . transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS intron 2433 2571 0.96 + . transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS intron 2665 3060 0.91 + . transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS intron 3129 3800 0.99 + . transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS intron 3879 4087 1 + . transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 1877 2006 0.83 + 0 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 2172 2432 0.96 + 2 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 2572 2664 0.92 + 2 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 3061 3128 0.99 + 2 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 3801 3878 1 + 0 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS CDS 4088 4174 0.66 + 0 transcript_id "g236.t1"; gene_id "g236"; scaffold_22_7782111-7786884 AUGUSTUS stop_codon 4172 4174 . + 0 transcript_id "g236.t1"; gene_id "g236"; # protein sequence = [MNSSNFSLTVENLELRDTGIVSVVLELITGKQEPTQFFTLQVYKSITEAKIDSNSTILKNGSCSVWLACSSPGHANVS # YTWRIKNQTHHTPQQLLHLHQAERLNVSCTALNPVSNETASRLVLCASDPNLGLWLVIIGVSAGGVLLFIFMTALVCYRCRKTESNAELTPDTIYADI # TEGIEMKDKPASNTVNPNTIYETVQDIVETPTQKTLTVYDKIHFDRMQPAYSADVSQYQQVL] # end gene g236 ### # # ----- sequence number 222 (length = 1792, name = scaffold_23_1992808-1994599) ----- # # annotation: # Sequence scaffold_23_1992808-1994599 length=1792 scaffold_23_1992808-1994599 database start_codon 601 603 . + 0 transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database intron 700 840 . + . transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database intron 969 1098 . + . transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database CDS 601 699 . + 0 transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database CDS 841 968 . + 0 transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database CDS 1099 1192 . + 1 transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; scaffold_23_1992808-1994599 database stop_codon 1190 1192 . + 0 transcript_id "g_1503-T1.1"; gene_id "g_1503-T1"; # Predicted genes for sequence number 222 on both strands # start gene g237 scaffold_23_1992808-1994599 AUGUSTUS gene 1 1192 0.98 + . g237 scaffold_23_1992808-1994599 AUGUSTUS transcript 1 1192 0.98 + . g237.t1 scaffold_23_1992808-1994599 AUGUSTUS intron 1 78 1 + . transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS intron 218 326 0.98 + . transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS intron 485 600 1 + . transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS intron 700 840 1 + . transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS intron 969 1098 1 + . transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS CDS 79 217 0.98 + 0 transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS CDS 327 484 0.98 + 2 transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS CDS 601 699 1 + 0 transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS CDS 841 968 1 + 0 transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS CDS 1099 1192 1 + 1 transcript_id "g237.t1"; gene_id "g237"; scaffold_23_1992808-1994599 AUGUSTUS stop_codon 1190 1192 . + 0 transcript_id "g237.t1"; gene_id "g237"; # protein sequence = [DYPKLSQSFYSLLEVLTQDHMNFIASLEPHVVMYILSSISEGLTALDTMVCTGCCSSLDHIVTYLFKQLSRSTKKRPA # PMATDDRFLHIMQQHPEMIQQMLSTVLNIIIFEDCRNQWSMSRPLLGLILLNEKYFADLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRF # TQNLSVFRREVNDSMKNSTYGVNSNDMMS] # end gene g237 ### # # ----- sequence number 223 (length = 3782, name = scaffold_23_2414548-2418329) ----- # # annotation: # Sequence scaffold_23_2414548-2418329 length=3782 scaffold_23_2414548-2418329 database start_codon 601 603 . + 0 transcript_id "g_1509-T1.1"; gene_id "g_1509-T1"; scaffold_23_2414548-2418329 database intron 732 1123 . + . transcript_id "g_1509-T1.1"; gene_id "g_1509-T1"; scaffold_23_2414548-2418329 database CDS 601 731 . + 0 transcript_id "g_1509-T1.1"; gene_id "g_1509-T1"; scaffold_23_2414548-2418329 database CDS 1124 3182 . + 1 transcript_id "g_1509-T1.1"; gene_id "g_1509-T1"; scaffold_23_2414548-2418329 database stop_codon 3180 3182 . + 0 transcript_id "g_1509-T1.1"; gene_id "g_1509-T1"; # Predicted genes for sequence number 223 on both strands # start gene g238 scaffold_23_2414548-2418329 AUGUSTUS gene 1 3182 0.71 + . g238 scaffold_23_2414548-2418329 AUGUSTUS transcript 1 3182 0.71 + . g238.t1 scaffold_23_2414548-2418329 AUGUSTUS intron 1 595 0.71 + . transcript_id "g238.t1"; gene_id "g238"; scaffold_23_2414548-2418329 AUGUSTUS intron 732 1123 1 + . transcript_id "g238.t1"; gene_id "g238"; scaffold_23_2414548-2418329 AUGUSTUS CDS 596 731 0.71 + 2 transcript_id "g238.t1"; gene_id "g238"; scaffold_23_2414548-2418329 AUGUSTUS CDS 1124 3182 1 + 1 transcript_id "g238.t1"; gene_id "g238"; scaffold_23_2414548-2418329 AUGUSTUS stop_codon 3180 3182 . + 0 transcript_id "g238.t1"; gene_id "g238"; # protein sequence = [EMQDRAEVTVYDNFQLKDQWEKRAQLLSDKDNQEKERKEKSALNGLFKQWQYRMAVRTGTAPVSEKKGKGSDMSDFRK # YVVRASGEEVDMAVLEAKFKVKPPPKKPAPPPPSPPPKKKAPPPARKQRPPKPEEKKPEPPKKPVLREKPKPAPIKENLSAGWGDSWKMLKSPLHQQR # SVESKQDSVAPRQTNDKSYKSQEHDFNKHWGSEAEWKESWKQLKNNSNEVSMENMSFFEIISQGKWWRTYEEIETFALPVWAGTWKTVNFKLGQTPED # WDQKWPQYKREPSDKLLKAQFLEDTVSLPGWEECWKTSKPDVKHETEKAKLQIPNVFLPGWNDSWKTSNTGVKHDDQAPPSMRDWRDSWSYCQEHKWC # LASMESRYRHYVMMMAKRRLANELRGSLLDEEIPSEWMESWKSPQCQSQAEEEYESEPVAEQDMSDVPLHLQFHKINTSFPSWSESWKVSSAPAAGDE # EEQSSTDWKDSWKLSSPNITADSQSHEDVMFLSTEHKTHRYMGVEHAEDAMGQDEWSESWKTTKPEPQQKGEEENASDRNYDLSKHSPLVIDIPLYDW # TESWRLLTSFKPCNSYSLARWKESWRLSNLNHTEQLDQGPESRFYRQNGPKHHQHLHEVELPLAEWNNSWKYLKSDTLDPNMSREDSGEWGQSWRVLN # PQLYLKKEAWCDQATPEPEPFGDLRLQFTFLSREDRMLLKPELSPSEWSESWRFLKQEADTKSK] # end gene g238 ### # # ----- sequence number 224 (length = 3750, name = scaffold_23_4089366-4093115) ----- # # annotation: # Sequence scaffold_23_4089366-4093115 length=3750 scaffold_23_4089366-4093115 database start_codon 601 603 . + 0 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database intron 711 1481 . + . transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database intron 1528 1683 . + . transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database intron 1726 2220 . + . transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database intron 2301 3035 . + . transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database CDS 601 710 . + 0 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database CDS 1482 1527 . + 1 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database CDS 1684 1725 . + 0 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database CDS 2221 2300 . + 0 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database CDS 3036 3150 . + 1 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; scaffold_23_4089366-4093115 database stop_codon 3148 3150 . + 0 transcript_id "g_1517-T1.1"; gene_id "g_1517-T1"; # Predicted genes for sequence number 224 on both strands # (none) # # ----- sequence number 225 (length = 3846, name = scaffold_23_5306674-5310519) ----- # # annotation: # Sequence scaffold_23_5306674-5310519 length=3846 scaffold_23_5306674-5310519 database start_codon 601 603 . + 0 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database intron 654 1600 . + . transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database intron 1803 1899 . + . transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database intron 2017 2951 . + . transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database intron 3011 3098 . + . transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database CDS 601 653 . + 0 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database CDS 1601 1802 . + 1 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database CDS 1900 2016 . + 0 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database CDS 2952 3010 . + 0 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database CDS 3099 3246 . + 1 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; scaffold_23_5306674-5310519 database stop_codon 3244 3246 . + 0 transcript_id "g_1525-T1.1"; gene_id "g_1525-T1"; # Predicted genes for sequence number 225 on both strands # start gene g239 scaffold_23_5306674-5310519 AUGUSTUS gene 601 3246 0.77 + . g239 scaffold_23_5306674-5310519 AUGUSTUS transcript 601 3246 0.77 + . g239.t1 scaffold_23_5306674-5310519 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS intron 654 1600 1 + . transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS intron 1803 1899 1 + . transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS intron 2017 2951 1 + . transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS intron 3011 3098 1 + . transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS CDS 601 653 1 + 0 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS CDS 1601 1802 1 + 1 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS CDS 1900 2016 1 + 0 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS CDS 2952 3010 1 + 0 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS CDS 3099 3246 0.77 + 1 transcript_id "g239.t1"; gene_id "g239"; scaffold_23_5306674-5310519 AUGUSTUS stop_codon 3244 3246 . + 0 transcript_id "g239.t1"; gene_id "g239"; # protein sequence = [MAGRSDDESVSNSSGESSNSDDESGSGSGSGSASGSSSSSSSSSSQSGSSDSGSGSDSGSQSDSDSEKSKEKNEHQNK # ANIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQSSSNSGSDEDSSSSDDSDDDSSGSRKKRKSGSSSDSESVSGSGSGSDSSPQEEERSDETVS # DYEPSHKVKSRKPLTK] # end gene g239 ### # # ----- sequence number 226 (length = 2934, name = scaffold_23_5731576-5734509) ----- # # annotation: # Sequence scaffold_23_5731576-5734509 length=2934 scaffold_23_5731576-5734509 database start_codon 601 603 . + 0 transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database intron 1018 1305 . + . transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database intron 1487 2164 . + . transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database CDS 601 1017 . + 0 transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database CDS 1306 1486 . + 0 transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database CDS 2165 2334 . + 2 transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; scaffold_23_5731576-5734509 database stop_codon 2332 2334 . + 0 transcript_id "g_1529-T1.1"; gene_id "g_1529-T1"; # Predicted genes for sequence number 226 on both strands # start gene g240 scaffold_23_5731576-5734509 AUGUSTUS gene 601 2334 0.59 + . g240 scaffold_23_5731576-5734509 AUGUSTUS transcript 601 2334 0.59 + . g240.t1 scaffold_23_5731576-5734509 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS intron 1018 1305 1 + . transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS intron 1487 2164 0.9 + . transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS CDS 601 1017 1 + 0 transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS CDS 1306 1486 1 + 0 transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS CDS 2165 2334 0.59 + 2 transcript_id "g240.t1"; gene_id "g240"; scaffold_23_5731576-5734509 AUGUSTUS stop_codon 2332 2334 . + 0 transcript_id "g240.t1"; gene_id "g240"; # protein sequence = [MSTAHRLVIVRHGESAWNQENRFCGWFDADLSEKGVEEARRGAQAIKDAGMKFDVCHTSVLKRAVKTLWTIMEITDQM # WLPVHRTWRLNERHYGGLTGLNKAETAEKHGEEQVKIWRRSFDTPPPPMDKDHAYHKIISESRRYKGLKAGELPTCESLKDTIARALPYWNDVIAPEI # KAGKNVIIAAHGNSLRGIVKHLEGMSDAAIMELNLPTGIPIVYELDKDLKPTKPMQFLGDEETVRKAMEAVAAQGKAKK] # end gene g240 ### # # ----- sequence number 227 (length = 5322, name = scaffold_23_10224796-10230117) ----- # # annotation: # Sequence scaffold_23_10224796-10230117 length=5322 scaffold_23_10224796-10230117 database start_codon 601 603 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database intron 652 1886 . + . transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database intron 1947 2054 . + . transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database intron 2162 3113 . + . transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database intron 3255 4090 . + . transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database intron 4272 4578 . + . transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 601 651 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 1887 1946 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 2055 2161 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 3114 3254 . + 1 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 4091 4271 . + 1 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database CDS 4579 4722 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; scaffold_23_10224796-10230117 database stop_codon 4720 4722 . + 0 transcript_id "g_1555-T1.1"; gene_id "g_1555-T1"; # Predicted genes for sequence number 227 on both strands # start gene g241 scaffold_23_10224796-10230117 AUGUSTUS gene 601 4722 0.72 + . g241 scaffold_23_10224796-10230117 AUGUSTUS transcript 601 4722 0.72 + . g241.t1 scaffold_23_10224796-10230117 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 652 1886 0.85 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 1947 2054 0.86 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 2162 3113 0.99 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 3255 3573 0.86 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 3649 4090 0.86 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS intron 4272 4578 1 + . transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 601 651 0.99 + 0 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 1887 1946 0.86 + 0 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 2055 2161 1 + 0 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 3114 3254 1 + 1 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 3574 3648 0.86 + 1 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 4091 4271 1 + 1 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS CDS 4579 4722 1 + 0 transcript_id "g241.t1"; gene_id "g241"; scaffold_23_10224796-10230117 AUGUSTUS stop_codon 4720 4722 . + 0 transcript_id "g241.t1"; gene_id "g241"; # protein sequence = [MSDFKLGIVRLGRVAGKTKYTLIDEQDIPLVENYAFEARMEVDADGNGAKIFAYAFDIGKGRWAGRPLHELLWEKHRG # GIAPSFQVVHINSVTVDNRLDNLRLVPVGWCPKPEEISSKQRWYYHQNVAVTDLKRVHVLVRLRVHAEQSLYWLAIQQVPADPVEEQYLELSRTRYYN # ANGELVEEEECSCTYYECHYPPCSLIERRLREFNICGRCQVARYCGSQCQQRDWPAHKKQCRERKRVLALESEPER] # end gene g241 ### # # ----- sequence number 228 (length = 6944, name = scaffold_24_646963-653906) ----- # # annotation: # Sequence scaffold_24_646963-653906 length=6944 scaffold_24_646963-653906 database start_codon 601 603 . + 0 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 1359 1856 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 2053 2704 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 2850 3142 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 3236 3682 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 3979 4239 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 4425 4583 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 4689 4828 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 4996 5596 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database intron 5762 6264 . + . transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 601 1358 . + 0 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 1857 2052 . + 1 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 2705 2849 . + 0 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 3143 3235 . + 2 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 3683 3978 . + 2 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 4240 4424 . + 0 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 4584 4688 . + 1 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 4829 4995 . + 1 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 5597 5761 . + 2 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database CDS 6265 6344 . + 2 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; scaffold_24_646963-653906 database stop_codon 6342 6344 . + 0 transcript_id "g_1565-T1.1"; gene_id "g_1565-T1"; # Predicted genes for sequence number 228 on both strands # start gene g242 scaffold_24_646963-653906 AUGUSTUS gene 1 506 0.81 + . g242 scaffold_24_646963-653906 AUGUSTUS transcript 1 506 0.81 + . g242.t1 scaffold_24_646963-653906 AUGUSTUS intron 1 422 0.99 + . transcript_id "g242.t1"; gene_id "g242"; scaffold_24_646963-653906 AUGUSTUS CDS 423 506 0.81 + 0 transcript_id "g242.t1"; gene_id "g242"; scaffold_24_646963-653906 AUGUSTUS stop_codon 504 506 . + 0 transcript_id "g242.t1"; gene_id "g242"; # protein sequence = [VPGSDPASTWTPSQPPPGPLASLHLDP] # end gene g242 ### # start gene g243 scaffold_24_646963-653906 AUGUSTUS gene 601 6344 0.4 + . g243 scaffold_24_646963-653906 AUGUSTUS transcript 601 6344 0.4 + . g243.t1 scaffold_24_646963-653906 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 1359 1856 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 2053 2704 0.59 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 2850 3142 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 3236 3682 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 4425 4583 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 4689 4828 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 4996 5596 1 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS intron 5762 6264 0.69 + . transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 601 1358 1 + 0 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 1857 2052 0.6 + 1 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 2705 2849 0.97 + 0 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 3143 3235 1 + 2 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 3683 4424 1 + 2 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 4584 4688 1 + 1 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 4829 4995 1 + 1 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 5597 5761 1 + 2 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS CDS 6265 6344 0.68 + 2 transcript_id "g243.t1"; gene_id "g243"; scaffold_24_646963-653906 AUGUSTUS stop_codon 6342 6344 . + 0 transcript_id "g243.t1"; gene_id "g243"; # protein sequence = [MRTAEASSSTVLHRLIQEQLRYGNPNHTPTLLAIQQQALRGGSGGGGAGTPRSSLESLTQEEAQGTHMCTRQEPQGQE # HQGDYKHLESQDCRLYQLHEEDLPTYEEAKAHSQYLASQRGVGPHSEALHSEALHSEALHSEALHSEALHSEAHWDVRREHARSLSERLLLLSLERTS # SSDALALSASHSYPQLPGLHPGPQGPGPLHHPDHRGPPPDYPFLVRAPGYMVSHSQEHRHGHYYNEPPPPFHSQHHRFVPVEAQEVRNSIYSTVSSAG # PEQFTTTPSMPSISSVQMEALARENERLKREMEGCRGKAARLQKLELESQKISQAYDTLVSSSTRREALDKTMRTRLEEEIKRLQHINRDLRDRLDTV # TKQRVAKEVESADHKHHIFSKLLEQNEDQQREREHVEKELQALRSSGEEWARRSEVLEVALASERARGRRLEEELSRKRAYVEKVEGLQGSLAQLQVA # CQKREALELRLRTRLEQELKTLRAQQVRTHSSPLSAVCPHPAPPCPHPAPPCLYPATPCPHPAPPCPHPAPPCHTLPPPCPHPAPPCPTLPPCSLAPP # CPVCSAPANLPVSPQRQAQGPQEPEQSPWVLQLQLREREERVLALEADITKWEQKYLEQSTIMQFAMDAAATAAAQRDTTIINHSPRHSPNDSFNNDD # MPLTNHRHQEMENRIRALHGELLGKDAVIKVLQQRSRREQQQGLRLAVSVPSLPGPTDTSSPADSSRAKGKSLSDDQTSSLPSPPRAPLRPQSRDSST # QCDAPPMEDSLHRGPGGPQPPLAADSDASEDVKAALNTHKTTSDADVVEILI] # end gene g243 ### # # ----- sequence number 229 (length = 7143, name = scaffold_24_4270381-4277523) ----- # # annotation: # Sequence scaffold_24_4270381-4277523 length=7143 scaffold_24_4270381-4277523 database start_codon 601 603 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 752 2636 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 2699 2952 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 3082 3676 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 3776 3881 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 3965 4087 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 4215 5509 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 5606 5782 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 5906 6067 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database intron 6233 6417 . + . transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 601 751 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 2637 2698 . + 2 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 2953 3081 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 3677 3775 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 3882 3964 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 4088 4214 . + 1 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 5510 5605 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 5783 5905 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 6068 6232 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database CDS 6418 6543 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; scaffold_24_4270381-4277523 database stop_codon 6541 6543 . + 0 transcript_id "g_1577-T1.1"; gene_id "g_1577-T1"; # Predicted genes for sequence number 229 on both strands # start gene g244 scaffold_24_4270381-4277523 AUGUSTUS gene 2023 6543 0.45 + . g244 scaffold_24_4270381-4277523 AUGUSTUS transcript 2023 6543 0.45 + . g244.t1 scaffold_24_4270381-4277523 AUGUSTUS start_codon 2023 2025 . + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 2042 2636 0.71 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 2699 2952 1 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 3082 3676 0.72 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 3776 3881 0.98 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 3965 4087 0.97 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 4215 5509 0.99 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 5606 5782 0.99 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 5906 6067 0.85 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS intron 6233 6417 0.99 + . transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 2023 2041 0.71 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 2637 2698 1 + 2 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 2953 3081 0.73 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 3677 3775 0.98 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 3882 3964 0.97 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 4088 4214 1 + 1 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 5510 5605 0.99 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 5783 5905 1 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 6068 6232 0.85 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS CDS 6418 6543 0.99 + 0 transcript_id "g244.t1"; gene_id "g244"; scaffold_24_4270381-4277523 AUGUSTUS stop_codon 6541 6543 . + 0 transcript_id "g244.t1"; gene_id "g244"; # protein sequence = [MDNVPLMKEFLAKAKEDFLRKWECPPQSTTGLDDFDRLKTLGTGSFGRVMLVKHKGTEQFYAMKILDKQKVVKLKQIE # HTLNEKRILQAVSFPFLVRLEYAFKDNSNLYMVMEYVPGGEMFSHLRRIGRFSENHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQHGYIQVTD # FGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFG # NLKNGVNDIKNHKWFATTDWIAIYERKVEAPFIPKCRGPGDTSNFDDYEEEEVRVSDTEKCAKEFSEF] # end gene g244 ### # # ----- sequence number 230 (length = 21874, name = scaffold_24_5930672-5952545) ----- # # annotation: # Sequence scaffold_24_5930672-5952545 length=21874 scaffold_24_5930672-5952545 database start_codon 601 603 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 712 2346 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 2473 3950 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 4012 5783 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 5906 7154 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 7298 7856 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 8042 8236 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 8332 8524 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 8716 8893 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 8966 9812 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 9919 11362 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 11489 12660 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 12815 13275 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 13451 13599 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 13689 14408 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 14532 16921 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 16946 17383 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 17528 18980 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 19151 20240 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 20437 20946 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database intron 21032 21177 . + . transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 601 711 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 2347 2472 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 3951 4011 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 5784 5905 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 7155 7297 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 7857 8041 . + 1 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 8237 8331 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 8525 8715 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 8894 8965 . + 1 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 9813 9918 . + 1 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 11363 11488 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 12661 12814 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 13276 13450 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 13600 13688 . + 1 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 14409 14531 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 16922 16945 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 17384 17527 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 18981 19150 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 20241 20436 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 20947 21031 . + 2 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database CDS 21178 21274 . + 1 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; scaffold_24_5930672-5952545 database stop_codon 21272 21274 . + 0 transcript_id "g_1586-T1.1"; gene_id "g_1586-T1"; # Predicted genes for sequence number 230 on both strands # start gene g245 scaffold_24_5930672-5952545 AUGUSTUS gene 601 21274 0.12 + . g245 scaffold_24_5930672-5952545 AUGUSTUS transcript 601 21274 0.12 + . g245.t1 scaffold_24_5930672-5952545 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 712 2346 0.99 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 2473 3950 0.99 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 4012 5783 0.96 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 5910 6817 0.41 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 6916 7154 0.65 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 7298 7856 0.96 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 8042 8236 1 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 8332 8524 1 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 8716 8893 0.97 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 8966 9812 0.97 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 9919 11362 0.72 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 11489 12660 1 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 12815 13275 0.99 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 13451 13599 0.99 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 13689 14408 1 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 14532 16921 0.88 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 16946 17383 0.88 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 17528 18980 0.97 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 19151 20240 0.97 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 20437 20946 1 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS intron 21032 21177 0.46 + . transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 601 711 0.99 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 2347 2472 1 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 3951 4011 0.99 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 5784 5909 0.4 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 6818 6915 0.36 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 7155 7297 1 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 7857 8041 1 + 1 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 8237 8331 1 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 8525 8715 1 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 8894 8965 0.97 + 1 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 9813 9918 0.72 + 1 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 11363 11488 1 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 12661 12814 0.99 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 13276 13450 0.98 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 13600 13688 1 + 1 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 14409 14531 1 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 16922 16945 0.88 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 17384 17527 0.99 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 18981 19150 0.99 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 20241 20436 1 + 0 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 20947 21031 0.65 + 2 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS CDS 21178 21274 0.42 + 1 transcript_id "g245.t1"; gene_id "g245"; scaffold_24_5930672-5952545 AUGUSTUS stop_codon 21272 21274 . + 0 transcript_id "g245.t1"; gene_id "g245"; # protein sequence = [MATDLGELLVPYMPTIRVPRTGDRVFKSECAFSYDSPESEGGLYVCMNTFLGFGREHVERHYRKTGQSVYMHLKRHIR # EKPTGAAGGAIPRRRNGKVFLDLELNRDFNGDHYEYEDEAKLVIFPDHYEIPLPNIEELPALVRLSGPSPYTYHSSRKRIETPLPFHVNAQNEGVGVT # IACDAVLNAASAYKKQDPDSWEEEIQVSRHARSLRQLDNGVRIPPSGWKCQKCELRENLWLNLTDGVVLCGKWFFDGSGGNGHALEHYRETNFPLAVK # LNTITPDGADIYSFDEEEAVLDPHISEHLSHFGIDMLQMQRPENGHHTDTNVRPRVSEWEVIQESGMKLKAVYGSGYTGIKNLGNSCYLSTVMQVLFS # IPEFQRAYVGNLQRIYDYSPLDPTQDFATQMAKLGHGLLSGLFSKPPMKSELIEQVMKEEHKVLDWHQQKGVSPRMFKALVSKGHPEFSSNRQQDAQE # FFLHIVNQVERNSSGSENPSDVFRFLVEERVQCCQTRRVRYSQRVDYLMQLPVPIEAATNREELIAYEAKRKDAEENMRAPPEPVRARVPFTACLQAF # TEPDNVPDFWSSALQAKSAGVKTSRFASFPEYLAVQIKKFTFGVDWVPKKLDLAIEVPDFLDLSRLRATGLQSGEEELPDLTPPIVLPEDTRDNSMNS # LDSPEIDEAAAMQLAEMGFPLEACRKAVYYTGNMGPEMAFNWIIAHMEEPDFAEPLALPTVLEPVPSSSSTSMGATPLDNQPPEESIAILTSMGFPRR # HTVQALKATNNNLERALDWIFTHPEIEEEESDGLSDIADTEPNDNVFSNVNSHSGSTMSPDQETSGPRVKDGPGRYELFAFISHMGASTMSGHYVCHI # KKEGRWVIYNDHKVCLSERPPKDLGYVYFYHRLSSS] # end gene g245 ### # # ----- sequence number 231 (length = 6857, name = scaffold_24_6458071-6464927) ----- # # annotation: # Sequence scaffold_24_6458071-6464927 length=6857 scaffold_24_6458071-6464927 database start_codon 601 603 . + 0 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 695 1752 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 1956 2364 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 2545 3134 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 3247 3464 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 3699 4068 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 4312 5327 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 5449 5682 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 5866 5983 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database intron 6092 6205 . + . transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 601 694 . + 0 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 1753 1955 . + 2 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 2365 2544 . + 0 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 3135 3246 . + 0 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 3465 3698 . + 2 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 4069 4311 . + 2 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 5328 5448 . + 2 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 5683 5865 . + 1 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 5984 6091 . + 1 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database CDS 6206 6257 . + 1 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; scaffold_24_6458071-6464927 database stop_codon 6255 6257 . + 0 transcript_id "g_1593-T1.1"; gene_id "g_1593-T1"; # Predicted genes for sequence number 231 on both strands # start gene g246 scaffold_24_6458071-6464927 AUGUSTUS gene 1 6257 0.46 + . g246 scaffold_24_6458071-6464927 AUGUSTUS transcript 1 6257 0.46 + . g246.t1 scaffold_24_6458071-6464927 AUGUSTUS intron 1 1752 0.58 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 1956 2364 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 2545 3134 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 3247 3464 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 3699 4068 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 4312 5327 0.99 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 5449 5682 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 5866 5983 1 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS intron 6092 6205 0.82 + . transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 1753 1955 0.99 + 2 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 2365 2544 1 + 0 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 3135 3246 1 + 0 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 3465 3698 1 + 2 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 4069 4311 1 + 2 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 5328 5448 0.99 + 2 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 5683 5865 1 + 1 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 5984 6091 0.99 + 1 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS CDS 6206 6257 0.82 + 1 transcript_id "g246.t1"; gene_id "g246"; scaffold_24_6458071-6464927 AUGUSTUS stop_codon 6255 6257 . + 0 transcript_id "g246.t1"; gene_id "g246"; # protein sequence = [NTTKSQTLSTIPDWLLDYTDIVSKFSLRTAETPDDDLCYLVPGQPKTIAECEFNPDTQTFVIIHGWTITGLFESWVPK # LVSALYQREPSANVIVVDWLTRAQQHYTTSAAYTKLVGRDVAKFVNWIQKELQYPWEKLHLLGYSLGAHVAGIAGALTENKVSRITGLDPAGPSFEYA # DSQSTLSPDDAEFVDVIHTNTRGSPDRSIGIQRPVGHIDIYPNGGTFQPGCDLQNTMLMIASSGFQNMDQIVKCSHERSIHLFIDSLVNAQLQSMAYR # CSSKEAFNQGLCLSCRKNRCNKMGYSVTKVRMPRTTKMYLKTREAMPYKVFHYQVKVHFFSKNKMSFSEQPLRVSLYGTNAEKEDIPLTMPFLNGNST # LSFLLTTDTDIGELMIVKLRWEKDALLSWSDWWGSSKFHIRKLRVKAGETQSKVIFRAKEGEFAYLSRGGEDAVFVKSKEENLSRTDRRLHRLKTKGS # LFGNNDA] # end gene g246 ### # # ----- sequence number 232 (length = 2589, name = scaffold_24_10437385-10439973) ----- # # annotation: # Sequence scaffold_24_10437385-10439973 length=2589 scaffold_24_10437385-10439973 database start_codon 601 603 . + 0 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database intron 680 974 . + . transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database intron 1068 1354 . + . transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database intron 1478 1876 . + . transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database CDS 601 679 . + 0 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database CDS 975 1067 . + 2 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database CDS 1355 1477 . + 2 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database CDS 1877 1989 . + 2 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; scaffold_24_10437385-10439973 database stop_codon 1987 1989 . + 0 transcript_id "g_1617-T1.1"; gene_id "g_1617-T1"; # Predicted genes for sequence number 232 on both strands # start gene g247 scaffold_24_10437385-10439973 AUGUSTUS gene 998 1989 0.64 + . g247 scaffold_24_10437385-10439973 AUGUSTUS transcript 998 1989 0.64 + . g247.t1 scaffold_24_10437385-10439973 AUGUSTUS start_codon 998 1000 . + 0 transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS intron 1068 1354 1 + . transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS intron 1478 1876 1 + . transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS CDS 998 1067 0.65 + 0 transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS CDS 1355 1477 1 + 2 transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS CDS 1877 1989 0.99 + 2 transcript_id "g247.t1"; gene_id "g247"; scaffold_24_10437385-10439973 AUGUSTUS stop_codon 1987 1989 . + 0 transcript_id "g247.t1"; gene_id "g247"; # protein sequence = [MVAFQPDSAMQAVQRATTATVTMASLGAVFGLATCLSAQARDAPDDPVNYFIGGCASGVLLGAKTNSAMTGASACLGL # GTLAMFAKVAKLENWRITGPPKL] # end gene g247 ### # # ----- sequence number 233 (length = 3141, name = scaffold_25_3682229-3685369) ----- # # annotation: # Sequence scaffold_25_3682229-3685369 length=3141 scaffold_25_3682229-3685369 database start_codon 601 603 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 682 826 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 947 1121 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 1274 1512 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 1709 1911 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 2112 2328 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 2402 2550 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database intron 2638 2727 . + . transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 601 681 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 827 946 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 1122 1273 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 1513 1708 . + 1 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 1912 2111 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 2329 2401 . + 1 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 2551 2637 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database CDS 2728 2793 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; scaffold_25_3682229-3685369 database stop_codon 2791 2793 . + 0 transcript_id "g_1630-T1.1"; gene_id "g_1630-T1"; # Predicted genes for sequence number 233 on both strands # start gene g248 scaffold_25_3682229-3685369 AUGUSTUS gene 1 2793 0.49 + . g248 scaffold_25_3682229-3685369 AUGUSTUS transcript 1 2793 0.49 + . g248.t1 scaffold_25_3682229-3685369 AUGUSTUS intron 1 583 0.51 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 682 826 0.99 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 947 1121 1 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 1274 1512 0.99 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 1709 1911 1 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 2112 2328 1 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 2402 2550 1 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS intron 2638 2727 1 + . transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 584 681 0.54 + 2 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 827 946 0.99 + 0 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 1122 1273 0.99 + 0 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 1513 1708 1 + 1 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 1912 2111 1 + 0 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 2329 2401 1 + 1 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 2551 2637 1 + 0 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS CDS 2728 2793 1 + 0 transcript_id "g248.t1"; gene_id "g248"; scaffold_25_3682229-3685369 AUGUSTUS stop_codon 2791 2793 . + 0 transcript_id "g248.t1"; gene_id "g248"; # protein sequence = [VLLKDMNDFAVLNTGRKMPLLGLGTWKSEPGKVKQAVIWALQAGYRHIDCAAIYGNEVEIGEALQETLGPDKGLRRED # VFVTSKLWNTKHHPEDVEPSLLKTLKDLRLEYLDLYLIHWPHAFQQGNVPFPKKEDGSILYDEIDYKLTWVAMEKLVEKGLVRAIGLSNFNSRQIDDV # LSIASIKPTVLQVEGHPYLAQVELLAHCRDRGLVMTAYSPLGSPDRAWKHPEEPVLLDEPVIATLAKKYNKSPAQIILRWQTQRGVGTIPKSVTESRI # KENIMVFDFTLEVEEMKCIVELNKGWCYIVPTITVDGKPVPRDAGHPHYPFNDPY] # end gene g248 ### # # ----- sequence number 234 (length = 3125, name = scaffold_25_4818017-4821141) ----- # # annotation: # Sequence scaffold_25_4818017-4821141 length=3125 scaffold_25_4818017-4821141 database start_codon 601 603 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 679 879 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 1084 1182 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 1304 1380 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 1434 1651 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 1719 1890 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 2107 2201 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database intron 2335 2518 . + . transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 601 678 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 880 1083 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 1183 1303 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 1381 1433 . + 2 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 1652 1718 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 1891 2106 . + 2 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 2202 2334 . + 2 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database CDS 2519 2525 . + 1 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; scaffold_25_4818017-4821141 database stop_codon 2523 2525 . + 0 transcript_id "g_1639-T1.1"; gene_id "g_1639-T1"; # Predicted genes for sequence number 234 on both strands # start gene g249 scaffold_25_4818017-4821141 AUGUSTUS gene 1 2562 0.82 + . g249 scaffold_25_4818017-4821141 AUGUSTUS transcript 1 2562 0.82 + . g249.t1 scaffold_25_4818017-4821141 AUGUSTUS intron 1 879 0.99 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 1084 1182 1 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 1304 1380 1 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 1434 1651 1 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 1719 1890 1 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 2107 2201 0.99 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS intron 2335 2549 0.83 + . transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 880 1083 1 + 0 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 1183 1303 1 + 0 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 1381 1433 1 + 2 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 1652 1718 1 + 0 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 1891 2106 1 + 2 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 2202 2334 0.88 + 2 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS CDS 2550 2562 0.83 + 1 transcript_id "g249.t1"; gene_id "g249"; scaffold_25_4818017-4821141 AUGUSTUS stop_codon 2560 2562 . + 0 transcript_id "g249.t1"; gene_id "g249"; # protein sequence = [PAKKRGWPKGKKRKKVLPNGPKAPVTGYVRFLNARREQIRAQHPDLPFPEITKRLGAEWSRLNPTDKQRYLDEAEREK # VQYARELKEYQQSEAYQITTAKIQDKKVKREESPSVIINANSSGVSNKGLEISPRFDVPMFTEEFLDQNKAREAELRRLRKANVEFEEQNGVLQKHIS # DMFAAKERLEAELGQDELRTQALQRHLLVIKHTLVSSLSSIALPGTGETPSLGNLDSYLSRLSGALESSPHEHRALLTQLRDVLGHLDNEKL] # end gene g249 ### # # ----- sequence number 235 (length = 3004, name = scaffold_25_8474590-8477593) ----- # # annotation: # Sequence scaffold_25_8474590-8477593 length=3004 scaffold_25_8474590-8477593 database start_codon 601 603 . + 0 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database intron 649 858 . + . transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database intron 1073 1319 . + . transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database intron 1665 1777 . + . transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database intron 1981 2101 . + . transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database CDS 601 648 . + 0 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database CDS 859 1072 . + 0 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database CDS 1320 1664 . + 2 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database CDS 1778 1980 . + 2 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database CDS 2102 2404 . + 0 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; scaffold_25_8474590-8477593 database stop_codon 2402 2404 . + 0 transcript_id "g_1655-T1.1"; gene_id "g_1655-T1"; # Predicted genes for sequence number 235 on both strands # start gene g250 scaffold_25_8474590-8477593 AUGUSTUS gene 601 2404 0.91 + . g250 scaffold_25_8474590-8477593 AUGUSTUS transcript 601 2404 0.91 + . g250.t1 scaffold_25_8474590-8477593 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS intron 649 858 1 + . transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS intron 1073 1319 0.97 + . transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS intron 1665 1777 0.96 + . transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS intron 1981 2101 1 + . transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS CDS 601 648 0.98 + 0 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS CDS 859 1072 0.98 + 0 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS CDS 1320 1664 0.95 + 2 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS CDS 1778 1980 1 + 2 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS CDS 2102 2404 1 + 0 transcript_id "g250.t1"; gene_id "g250"; scaffold_25_8474590-8477593 AUGUSTUS stop_codon 2402 2404 . + 0 transcript_id "g250.t1"; gene_id "g250"; # protein sequence = [MLMLSFIVIFIGNFDLVLSYCPAVCECPLDLPKCAPGVSLALDDCGCCKVCSRQLNEDCSLTEPCDHTKGLECNFGAS # FGATRGICRAKSEGRPCEYNSRIYQNGESFQPNCKHQCTCIDGAVGCIPLCPQELSLPNLGCANPRLVKVAGQCCEEWVCDDGKETDLIEKLFGKDMQ # TDESESDLTNRNEFIPFVKGGLKSLPAFRVQPEGHLFETQKCIVQTTPWSQCSKTCGTGISTRVTNNNNECKLVKETRICEVRPCTQSPYTSLKKGKK # CNRTKKSGQAVKFTYAGCFSLKKYRPKYCGSCVDGRCCSPQDTRTVRVKFRCEDGETFNKNVMMIESCKCTFNCPHANEASYPFYRLFNDIHKFRD] # end gene g250 ### # # ----- sequence number 236 (length = 6015, name = scaffold_26_3557982-3563996) ----- # # annotation: # Sequence scaffold_26_3557982-3563996 length=6015 scaffold_26_3557982-3563996 database start_codon 601 603 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 773 977 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 1116 1663 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 1819 2391 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 2554 2729 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 2916 3065 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 3336 3662 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 3789 4002 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 4189 4693 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 4752 4951 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 4984 5163 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database intron 5226 5324 . + . transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 601 772 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 978 1115 . + 2 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 1664 1818 . + 2 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 2392 2553 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 2730 2915 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 3066 3335 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 3663 3788 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 4003 4188 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 4694 4751 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 4952 4983 . + 2 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 5164 5225 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database CDS 5325 5415 . + 1 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; scaffold_26_3557982-3563996 database stop_codon 5413 5415 . + 0 transcript_id "g_1676-T1.1"; gene_id "g_1676-T1"; # Predicted genes for sequence number 236 on both strands # start gene g251 scaffold_26_3557982-3563996 AUGUSTUS gene 601 5415 0.34 + . g251 scaffold_26_3557982-3563996 AUGUSTUS transcript 601 5415 0.34 + . g251.t1 scaffold_26_3557982-3563996 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 773 977 1 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 1116 1663 1 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 1819 2391 1 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 2554 2729 1 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 2916 3065 0.93 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 3336 3662 0.64 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 3789 4002 0.99 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 4189 5163 0.75 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS intron 5226 5324 0.65 + . transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 601 772 0.96 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 978 1115 1 + 2 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 1664 1818 1 + 2 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 2392 2553 1 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 2730 2915 1 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 3066 3335 0.93 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 3663 3788 0.63 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 4003 4188 0.97 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 5164 5225 0.79 + 0 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS CDS 5325 5415 0.66 + 1 transcript_id "g251.t1"; gene_id "g251"; scaffold_26_3557982-3563996 AUGUSTUS stop_codon 5413 5415 . + 0 transcript_id "g251.t1"; gene_id "g251"; # protein sequence = [MEDEECWQQLEDYRLLLIKTIEPSRITPYLRQCKVLSSEDEEQIFNDPSLVLRRRRVGALLDILQRTGVKGHVAFLES # LELDYPQLYRKITGKEPARAFSILVDTVGESGLTQFLMSEVTRLQKGLAEERRLRQEAAAGLQDAARQQQLKERELQTQHERLQRLRTERDRYLEDIR # HLKDDNYSLMLQVTKLSEEKNCALMASRDLQLEIEKLKHTLLKAESDFQIQHRRSVSLRNIAERHCGVWPGQDTLRKLQNQNHLLTARLQELETKQAN # SSVLSSQPPDKQGRDTVDDQKVVDQEPRPLEVQSWSWEPQGGPGSLGEQSQVSGSLEDKESPVNGEPLSSIYSLKRELHLSQEQRDRYWEEKEVLELE # CTTLKKDGKMYRQRMEEILKQLDEVIKERNKALASREESHQESCRSLLEKDQYRRQIRELGERCDDLQAKLFRKEGEVLALKTRLRRQFTNHDELTPL # GYSTLPRLRCNFDYRRKLALRSKVHSRTLPPHDDSSGSDNTDSDG] # end gene g251 ### # # ----- sequence number 237 (length = 2716, name = scaffold_26_4439927-4442642) ----- # # annotation: # Sequence scaffold_26_4439927-4442642 length=2716 scaffold_26_4439927-4442642 database start_codon 601 603 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database intron 757 851 . + . transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database intron 1114 1345 . + . transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database intron 1455 1605 . + . transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database intron 1757 1867 . + . transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database intron 2003 2095 . + . transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 601 756 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 852 1113 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 1346 1454 . + 2 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 1606 1756 . + 1 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 1868 2002 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database CDS 2096 2116 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; scaffold_26_4439927-4442642 database stop_codon 2114 2116 . + 0 transcript_id "g_1687-T1.1"; gene_id "g_1687-T1"; # Predicted genes for sequence number 237 on both strands # start gene g252 scaffold_26_4439927-4442642 AUGUSTUS gene 601 2029 0.47 + . g252 scaffold_26_4439927-4442642 AUGUSTUS transcript 601 2029 0.47 + . g252.t1 scaffold_26_4439927-4442642 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS intron 757 851 1 + . transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS intron 1114 1345 0.95 + . transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS intron 1455 1605 0.99 + . transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS intron 1757 1867 1 + . transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS CDS 601 756 0.76 + 0 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS CDS 852 1113 0.97 + 0 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS CDS 1346 1454 1 + 2 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS CDS 1606 1756 0.99 + 1 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS CDS 1868 2029 0.65 + 0 transcript_id "g252.t1"; gene_id "g252"; scaffold_26_4439927-4442642 AUGUSTUS stop_codon 2027 2029 . + 0 transcript_id "g252.t1"; gene_id "g252"; # protein sequence = [MGSWHPFSNLRNYASQHPPVVTFVLCLLFLVLSFIGISSYAHTHILPNPDTKDWNNFLSSIALHQLCEVTNGTTDEQV # SSPPIGQKTGGDSLESPSQNPPAVTQYSLRVPLALVHKPDDQTSMVVELHASLLASQLGLTGDENVTVALQFFPLPPGGDTVTCLTFSTPAHTLPPAP # LPPQCPNNEMATPPVRAVAVETSSRSPAASRLCYSLKSTHDPSLTAMLTQEQQNVAVQHLVQVTVVLLGACVVLCLSASFSHTRRHQGNGLSQQRVTQ # SCFSR] # end gene g252 ### # # ----- sequence number 238 (length = 2483, name = scaffold_26_5293408-5295890) ----- # # annotation: # Sequence scaffold_26_5293408-5295890 length=2483 scaffold_26_5293408-5295890 database start_codon 601 603 . + 0 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database intron 711 818 . + . transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database intron 980 1158 . + . transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database intron 1260 1348 . + . transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database intron 1490 1802 . + . transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database CDS 601 710 . + 0 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database CDS 819 979 . + 1 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database CDS 1159 1259 . + 2 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database CDS 1349 1489 . + 0 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database CDS 1803 1883 . + 0 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; scaffold_26_5293408-5295890 database stop_codon 1881 1883 . + 0 transcript_id "g_1689-T1.1"; gene_id "g_1689-T1"; # Predicted genes for sequence number 238 on both strands # start gene g253 scaffold_26_5293408-5295890 AUGUSTUS gene 601 1883 0.63 + . g253 scaffold_26_5293408-5295890 AUGUSTUS transcript 601 1883 0.63 + . g253.t1 scaffold_26_5293408-5295890 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS intron 711 818 0.75 + . transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS intron 980 1158 0.97 + . transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS intron 1260 1348 0.99 + . transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS intron 1490 1802 0.87 + . transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS CDS 601 710 0.75 + 0 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS CDS 819 979 0.97 + 1 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS CDS 1159 1259 0.99 + 2 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS CDS 1349 1489 0.89 + 0 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS CDS 1803 1883 0.87 + 0 transcript_id "g253.t1"; gene_id "g253"; scaffold_26_5293408-5295890 AUGUSTUS stop_codon 1881 1883 . + 0 transcript_id "g253.t1"; gene_id "g253"; # protein sequence = [MDGSPGVYDDQTDSTKQQERHYFLLSELQTLVKDLPSSFQQRLSYTTLSDLALALIDGTVYEIVQGLLDIQHLTERNL # YNQRQKLHSEHRGLKQDLTRKHKDALQVCKSHNMAVLKANQQGETEALDIRVREEQRMMDEKIVAEMDQKVIDQQNTLEKAGVPGFYITTNPQELTMQ # MNLLELILKLQQKESQSGSAS] # end gene g253 ### # # ----- sequence number 239 (length = 8212, name = scaffold_26_5976478-5984689) ----- # # annotation: # Sequence scaffold_26_5976478-5984689 length=8212 scaffold_26_5976478-5984689 database start_codon 601 603 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 664 1175 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 1318 2246 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 2376 4201 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 4336 4684 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 4778 5800 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 5864 6376 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 6401 6513 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 6604 6694 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 6796 7035 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database intron 7250 7504 . + . transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 601 663 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 1176 1317 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 2247 2375 . + 2 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 4202 4335 . + 2 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 4685 4777 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 5801 5863 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 6377 6400 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 6514 6603 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 6695 6795 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 7036 7249 . + 1 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database CDS 7505 7612 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; scaffold_26_5976478-5984689 database stop_codon 7610 7612 . + 0 transcript_id "g_1700-T1.1"; gene_id "g_1700-T1"; # Predicted genes for sequence number 239 on both strands # start gene g254 scaffold_26_5976478-5984689 AUGUSTUS gene 601 7612 0.18 + . g254 scaffold_26_5976478-5984689 AUGUSTUS transcript 601 7612 0.18 + . g254.t1 scaffold_26_5976478-5984689 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 664 1175 0.69 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 1318 2246 0.78 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 2376 2789 0.82 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 2937 4201 0.66 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 4336 4684 0.99 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 4778 5800 0.82 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 5864 6376 0.69 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 6401 6513 0.74 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 6604 6694 1 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 6796 6910 0.96 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 6926 7035 0.96 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS intron 7250 7504 1 + . transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 601 663 0.68 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 1176 1317 1 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 2247 2375 0.93 + 2 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 2790 2936 0.59 + 2 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 4202 4335 1 + 2 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 4685 4777 0.99 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 5801 5863 0.82 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 6377 6400 0.69 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 6514 6603 1 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 6695 6795 1 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 6911 6925 0.96 + 1 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 7036 7249 1 + 1 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS CDS 7505 7612 1 + 0 transcript_id "g254.t1"; gene_id "g254"; scaffold_26_5976478-5984689 AUGUSTUS stop_codon 7610 7612 . + 0 transcript_id "g254.t1"; gene_id "g254"; # protein sequence = [MDFNVRKIASDAGVFFTRAVQFTEEKLGQAEKTELDAHFENLLSRADCTKNWTEKIFRQTEVLLQPNPSARIEEFLYE # KLDRKAPSRLTNAELLGHYMLDAAKDFGPGTPYEARLQDQYCSVPAGLSCSLIAALTGPERQNDSGPAHDFQGCPVLVWRWPRSTLIKVGDCERRLGG # AEREFLQTSAISFLTPLRNFLEGDWRTISKERRLLENRRLDLDVCKARLKKAKTAEAKAAAVPDFQDTRARNYVLSASASALWSEEVDKAEHDLRVAQ # TEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVEAQAAYYKQCHLHMLDLQKDLSSSNGDVFPNAFAANPGLPASPAGSPLDVGGPDGGCAAEVDTLKI # EEVQAPATGTRKAKVLYDYDAADTSELSLLADELITVYTVPGMDSDWLIGERGNQKGKVPVTYLELLS] # end gene g254 ### # # ----- sequence number 240 (length = 3829, name = scaffold_26_6296401-6300229) ----- # # annotation: # Sequence scaffold_26_6296401-6300229 length=3829 scaffold_26_6296401-6300229 database start_codon 601 603 . + 0 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database intron 658 1524 . + . transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database intron 1634 1905 . + . transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database intron 2017 2168 . + . transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database CDS 601 657 . + 0 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database CDS 1525 1633 . + 0 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database CDS 1906 2016 . + 2 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database CDS 2169 3229 . + 2 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; scaffold_26_6296401-6300229 database stop_codon 3227 3229 . + 0 transcript_id "g_1704-T1.1"; gene_id "g_1704-T1"; # Predicted genes for sequence number 240 on both strands # start gene g255 scaffold_26_6296401-6300229 AUGUSTUS gene 601 3229 0.93 + . g255 scaffold_26_6296401-6300229 AUGUSTUS transcript 601 3229 0.93 + . g255.t1 scaffold_26_6296401-6300229 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS intron 658 1524 0.95 + . transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS intron 1634 1905 1 + . transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS intron 2017 2168 1 + . transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS CDS 601 657 0.93 + 0 transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS CDS 1525 1633 1 + 0 transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS CDS 1906 2016 1 + 2 transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS CDS 2169 3229 1 + 2 transcript_id "g255.t1"; gene_id "g255"; scaffold_26_6296401-6300229 AUGUSTUS stop_codon 3227 3229 . + 0 transcript_id "g255.t1"; gene_id "g255"; # protein sequence = [MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRS # GPFGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVS # DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLT # SRGSQQYRSLTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNST # AIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFEEEGEEELA] # end gene g255 ### # # ----- sequence number 241 (length = 5031, name = scaffold_26_6717696-6722726) ----- # # annotation: # Sequence scaffold_26_6717696-6722726 length=5031 scaffold_26_6717696-6722726 database start_codon 601 603 . + 0 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 709 807 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 975 1258 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 1292 1395 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 1493 2189 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 2362 2509 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 3680 4219 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database intron 4269 4349 . + . transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 601 708 . + 0 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 808 974 . + 0 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 1259 1291 . + 1 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 1396 1492 . + 1 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 2190 2361 . + 0 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 2510 3679 . + 2 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 4220 4268 . + 2 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database CDS 4350 4431 . + 1 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; scaffold_26_6717696-6722726 database stop_codon 4429 4431 . + 0 transcript_id "g_1707-T1.1"; gene_id "g_1707-T1"; # Predicted genes for sequence number 241 on both strands # start gene g256 scaffold_26_6717696-6722726 AUGUSTUS gene 1 4431 0.44 + . g256 scaffold_26_6717696-6722726 AUGUSTUS transcript 1 4431 0.44 + . g256.t1 scaffold_26_6717696-6722726 AUGUSTUS intron 1 583 0.89 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 709 807 1 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 975 1258 0.93 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 1292 1395 0.93 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 1493 2189 0.96 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 2362 2509 1 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 3680 4219 0.55 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS intron 4269 4349 0.55 + . transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 584 708 0.89 + 2 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 808 974 1 + 0 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 1259 1291 0.93 + 1 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 1396 1492 1 + 1 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 2190 2361 0.97 + 0 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 2510 3679 1 + 2 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 4220 4268 0.55 + 2 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS CDS 4350 4431 0.53 + 1 transcript_id "g256.t1"; gene_id "g256"; scaffold_26_6717696-6722726 AUGUSTUS stop_codon 4429 4431 . + 0 transcript_id "g256.t1"; gene_id "g256"; # protein sequence = [IGPNMMLAKVCSDKNKPNGQYRLLPNRQTVMDFVKDLPVRKVSGIGKVTERMLGALGITTCGQLGQEMALVSLLFSET # SWHHFLQISLGLGSTHIERDGERKSMSTERTFGELSAAEEQLSLCQTLCQDLAEDLKKEALQGKTVTLKLKNVNFEVKSRAETLPCAIATAEEIFAVA # RDLLKTEIDSVSPQPLRLRLMGVRISSFVSSDDKRPLQKSIVGFLQQGRADSSSPSQVPALKGKVEPIFKPPVQSQTSGCPPLVEHTLGQREATWRAS # RRGVEEGRPGGQSFFQKAHAQRLRLLAEKGDAPGEGDSSVEATDANPKRADPSSKLQTSTKPDPDPSRASTLGLSLQAQASTSAWGSSEPEAQMDSLT # CPICFREVGTTDLAVFNRHIDLCLSGVSAESNQLPESEPHSSTERGRVLREDKAAEREMRRIDEDTEPSRSPDSAVPRLTETSSGKLLSLVLTVPGDS # EARSTSTSSLDAVGLTQSHCHSPSAVKPPKDDCLDLDSPRQRCVLPDPSPKSMTSESRSVRGPALTCPVCQVTQDTDDLTIFNRHVDLCLNQGMLHEL # GGLASLGQPHPSVTRIEVKEREPPLQITARKAKSKRRGSSLQPHAKKAKAPGPRNTIDRFFR] # end gene g256 ### # # ----- sequence number 242 (length = 10188, name = scaffold_27_614705-624892) ----- # # annotation: # Sequence scaffold_27_614705-624892 length=10188 scaffold_27_614705-624892 database start_codon 601 603 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 725 1006 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 1091 1290 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 1386 1669 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 1782 1914 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 2020 2255 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 2468 2910 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 3091 3482 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 3576 3771 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 3872 4890 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 5032 5261 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 5474 6709 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 6856 7309 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 7383 8175 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 8300 8587 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 8756 9087 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 9264 9347 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database intron 9477 9561 . + . transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 601 724 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 1007 1090 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 1291 1385 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 1670 1781 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 1915 2019 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 2256 2467 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 2911 3090 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 3483 3575 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 3772 3871 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 4891 5031 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 5262 5473 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 6710 6855 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 7310 7382 . + 1 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 8176 8299 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 8588 8755 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 9088 9263 . + 2 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 9348 9476 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database CDS 9562 9588 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; scaffold_27_614705-624892 database stop_codon 9586 9588 . + 0 transcript_id "g_1720-T1.1"; gene_id "g_1720-T1"; # Predicted genes for sequence number 242 on both strands # start gene g257 scaffold_27_614705-624892 AUGUSTUS gene 1 9588 0.41 + . g257 scaffold_27_614705-624892 AUGUSTUS transcript 1 9588 0.41 + . g257.t1 scaffold_27_614705-624892 AUGUSTUS intron 1 598 0.53 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 725 1006 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 1091 1290 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 1386 1669 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 1782 1914 0.99 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 2020 2255 0.99 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 2468 2910 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 3091 3482 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 3576 3771 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 3872 4890 0.86 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 5032 5261 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 5474 6709 0.99 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 6856 7309 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 7383 7756 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 7802 8175 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 8300 8587 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 8756 9087 0.99 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 9264 9347 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS intron 9477 9561 1 + . transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 599 724 0.87 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 1007 1090 1 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 1291 1385 1 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 1670 1781 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 1915 2019 0.99 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 2256 2467 1 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 2911 3090 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 3483 3575 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 3772 3871 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 4891 5031 0.86 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 5262 5473 0.99 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 6710 6855 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 7310 7382 1 + 1 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 7757 7801 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 8176 8299 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 8588 8755 0.99 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 9088 9263 0.99 + 2 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 9348 9476 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS CDS 9562 9588 1 + 0 transcript_id "g257.t1"; gene_id "g257"; scaffold_27_614705-624892 AUGUSTUS stop_codon 9586 9588 . + 0 transcript_id "g257.t1"; gene_id "g257"; # protein sequence = [MEHLVRELQVLLKLLDHECVSSATAEKMTTVRNLLDHFQPAVNGSGFIYMNTSLYRNGTSFVESLFDEFDCDLQELSV # SPEELKEQQEEVEGSSVTQPSKSSPTDTPPPLPTTPIPEDYYEEAVPLDPGTMPQYITTRVSSSPPISGEIQDAYYEDADENYPATHINGPCKNSYND # SDALSSSYESYDEEEEEAKGRGRPPRWKAEENAVGPMKDCRICAFLLRKKRFGQWAKQLTVVRDNQLQCYKSIKDSSPYMELPLNLCNVIYVPKDGRR # KKHELRFSLPGGQALVLAVQSKEQAQRWLQVIQEVASQANSNETLEGSSSPIIQRKLELDKLLSVDKHMSDSDSAVTGDNLPSNHGPGRENGEQGRAK # RGPFSDLTGSMSRAAGRKITRIISFSKKKPPSSSTSLHDNPRCGYLNVLVGQSWVENWCSVRGGTLHLHRDRGDLRTPVSSIPLGGAEVVPGFGAKHP # FAFRILQGATELAALEASSSEEMGRWLGVLLAESGASTLPEALHYDYIDVDTISNIQDAARHSFLWATSSSSTSTDSRTYDEVPYESILAVSAIPPTA # LWEISEQGAPEARPPQVKRHASFSSRDAEREEPQVTVKRHASSRSTQDVNQYGKYGKTRAEEDARRYLREKEELEREKEAIRQALNTLRSQRREARHQ # IKTLTGRQQQAAEQRVSQLEEACRGKEGERVDLELRLSEVKENLKKSLAGGVLGPPTDNKPISKVLLRKVENVYSESTTPVNCAAEMKKRPPSLYASS # RGNVMQKAKEWESKKGT] # end gene g257 ### # # ----- sequence number 243 (length = 2449, name = scaffold_27_1550821-1553269) ----- # # annotation: # Sequence scaffold_27_1550821-1553269 length=2449 scaffold_27_1550821-1553269 database start_codon 601 603 . + 0 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database intron 750 959 . + . transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database intron 1122 1414 . + . transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database intron 1492 1862 . + . transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database CDS 601 749 . + 0 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database CDS 960 1121 . + 1 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database CDS 1415 1491 . + 1 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database CDS 1863 1930 . + 2 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; scaffold_27_1550821-1553269 database stop_codon 1928 1930 . + 0 transcript_id "g_1725-T1.1"; gene_id "g_1725-T1"; # Predicted genes for sequence number 243 on both strands # start gene g258 scaffold_27_1550821-1553269 AUGUSTUS gene 601 1930 0.51 + . g258 scaffold_27_1550821-1553269 AUGUSTUS transcript 601 1930 0.51 + . g258.t1 scaffold_27_1550821-1553269 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS intron 750 959 1 + . transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS intron 1122 1414 1 + . transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS intron 1492 1862 1 + . transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS CDS 601 749 0.51 + 0 transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS CDS 960 1121 1 + 1 transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS CDS 1415 1491 1 + 1 transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS CDS 1863 1930 1 + 2 transcript_id "g258.t1"; gene_id "g258"; scaffold_27_1550821-1553269 AUGUSTUS stop_codon 1928 1930 . + 0 transcript_id "g258.t1"; gene_id "g258"; # protein sequence = [MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAA # QDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL] # end gene g258 ### # # ----- sequence number 244 (length = 3939, name = scaffold_27_1553270-1557208) ----- # # annotation: # Sequence scaffold_27_1553270-1557208 length=3939 scaffold_27_1553270-1557208 database start_codon 520 522 . + 0 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database intron 597 1511 . + . transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database intron 1691 1794 . + . transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database intron 1863 1981 . + . transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database intron 2190 2569 . + . transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database intron 2597 3331 . + . transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 520 596 . + 0 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 1512 1690 . + 1 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 1795 1862 . + 2 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 1982 2189 . + 0 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 2570 2596 . + 2 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database CDS 3332 3339 . + 2 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; scaffold_27_1553270-1557208 database stop_codon 3337 3339 . + 0 transcript_id "g_1726-T1.1"; gene_id "g_1726-T1"; # Predicted genes for sequence number 244 on both strands # start gene g259 scaffold_27_1553270-1557208 AUGUSTUS gene 520 3339 0.73 + . g259 scaffold_27_1553270-1557208 AUGUSTUS transcript 520 3339 0.73 + . g259.t1 scaffold_27_1553270-1557208 AUGUSTUS start_codon 520 522 . + 0 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS intron 597 1511 0.83 + . transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS intron 1691 1794 0.97 + . transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS intron 1863 1981 0.99 + . transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS intron 2190 2569 0.96 + . transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS intron 2597 3331 0.94 + . transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 520 596 0.98 + 0 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 1512 1690 0.83 + 1 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 1795 1862 0.97 + 2 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 1982 2189 0.99 + 0 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 2570 2596 0.95 + 2 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS CDS 3332 3339 0.98 + 2 transcript_id "g259.t1"; gene_id "g259"; scaffold_27_1553270-1557208 AUGUSTUS stop_codon 3337 3339 . + 0 transcript_id "g259.t1"; gene_id "g259"; # protein sequence = [MTEPTRPLIGASSQQTMVDVGATTVVSPSPSSTRAYKVAGFTLLACLLIAGQGVTAYFLLRQGNDITSLEKQTDNLKG # QMTNSHSASVPKKMHVPVNPMPRLVHLEDEGTQLSGTQCQLEALGLAPVNLPSFRPACDQAGNYMPQQCWKDLCWCVDASGMEVDGSKMHGKAFCAVS # SGMNLGLEFTDE] # end gene g259 ### # # ----- sequence number 245 (length = 2953, name = scaffold_27_1576879-1579831) ----- # # annotation: # Sequence scaffold_27_1576879-1579831 length=2953 scaffold_27_1576879-1579831 database start_codon 601 603 . + 0 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database intron 626 1015 . + . transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database intron 1148 1347 . + . transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database intron 1620 1714 . + . transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database intron 1824 2129 . + . transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database CDS 601 625 . + 0 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database CDS 1016 1147 . + 2 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database CDS 1348 1619 . + 2 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database CDS 1715 1823 . + 0 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database CDS 2130 2353 . + 2 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; scaffold_27_1576879-1579831 database stop_codon 2351 2353 . + 0 transcript_id "g_1727-T1.1"; gene_id "g_1727-T1"; # Predicted genes for sequence number 245 on both strands # start gene g260 scaffold_27_1576879-1579831 AUGUSTUS gene 601 2353 0.89 + . g260 scaffold_27_1576879-1579831 AUGUSTUS transcript 601 2353 0.89 + . g260.t1 scaffold_27_1576879-1579831 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS intron 626 1015 0.93 + . transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS intron 1148 1347 0.97 + . transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS intron 1620 1714 0.99 + . transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS intron 1824 2129 1 + . transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS CDS 601 625 0.92 + 0 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS CDS 1016 1147 1 + 2 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS CDS 1348 1619 0.97 + 2 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS CDS 1715 1823 0.99 + 0 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS CDS 2130 2353 1 + 2 transcript_id "g260.t1"; gene_id "g260"; scaffold_27_1576879-1579831 AUGUSTUS stop_codon 2351 2353 . + 0 transcript_id "g260.t1"; gene_id "g260"; # protein sequence = [MEDLYIKPGNQDRGWNDPPQFSYGLQAAQAQGGPKRTLLNKRVPPPQLTGSPGPVPGMTPPTTMPLTPPTNPIAPPPC # NMNTPPSACPLVAKPPCGLGTPPSVQCPMAAHRGTSSSQSEKEPVIDDVLAGLNWALTACRHTVKKQVCDDVDKRVRLFEDMWRSGRLSLPVRRRMST # LAQELRGRRWDSADDIHRSLMVDHVTEVGQWMVGVKRLIAETRNLTPDLLSTNEDEEEQEESTTNNNNTDSPVPDSP] # end gene g260 ### # # ----- sequence number 246 (length = 10702, name = scaffold_27_2106382-2117083) ----- # # annotation: # Sequence scaffold_27_2106382-2117083 length=10702 scaffold_27_2106382-2117083 database start_codon 601 603 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 865 940 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 1011 1313 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 1433 3100 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 3235 3520 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 3690 4009 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 4094 5323 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 5410 5578 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 5654 5785 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 5947 6293 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 6455 6942 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 7155 7322 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 7363 7497 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 7564 7639 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 7698 7819 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 7885 8243 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 8313 8616 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 8696 9112 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 9230 9849 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database intron 9909 10075 . + . transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 601 864 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 941 1010 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 1314 1432 . + 2 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 3101 3234 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 3521 3689 . + 1 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 4010 4093 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 5324 5409 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 5579 5653 . + 1 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 5786 5946 . + 1 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 6294 6454 . + 2 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 6943 7154 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 7323 7362 . + 1 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 7498 7563 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 7640 7697 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 7820 7884 . + 2 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 8244 8312 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 8617 8695 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 9113 9229 . + 2 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 9850 9908 . + 2 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database CDS 10076 10102 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; scaffold_27_2106382-2117083 database stop_codon 10100 10102 . + 0 transcript_id "g_1729-T1.1"; gene_id "g_1729-T1"; # Predicted genes for sequence number 246 on both strands # start gene g261 scaffold_27_2106382-2117083 AUGUSTUS gene 601 10102 0.66 + . g261 scaffold_27_2106382-2117083 AUGUSTUS transcript 601 10102 0.66 + . g261.t1 scaffold_27_2106382-2117083 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 865 940 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 1011 1313 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 1433 3100 0.97 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 3235 3520 0.99 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 3690 4009 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 4094 5323 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 5410 5578 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 5654 5785 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 5947 6293 0.99 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 6455 6647 0.92 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 6660 6942 0.91 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 7155 7322 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 7363 7497 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 7564 7639 0.94 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 7698 7819 0.98 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 7885 8243 0.95 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 8313 8616 0.98 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 8696 9112 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 9230 9849 0.85 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS intron 9909 10075 1 + . transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 601 864 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 941 1010 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 1314 1432 1 + 2 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 3101 3234 0.99 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 3521 3689 1 + 1 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 4010 4093 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 5324 5409 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 5579 5653 1 + 1 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 5786 5946 0.99 + 1 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 6294 6454 1 + 2 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 6648 6659 0.92 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 6943 7154 0.99 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 7323 7362 1 + 1 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 7498 7563 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 7640 7697 0.93 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 7820 7884 0.99 + 2 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 8244 8312 0.98 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 8617 8695 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 9113 9229 0.85 + 2 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 9850 9908 0.85 + 2 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS CDS 10076 10102 1 + 0 transcript_id "g261.t1"; gene_id "g261"; scaffold_27_2106382-2117083 AUGUSTUS stop_codon 10100 10102 . + 0 transcript_id "g261.t1"; gene_id "g261"; # protein sequence = [MEQVIERVFASGVAARLRSQWDRSEGLGQNDKALRFLGQDFESLRVQCLKAGRLFEDQAFPPQVSSLGFKELGPRSSK # TQGVRWMRPTEFCSDPHFIVDGATRTDVCQGSLGDCWLLAAIASLTLNETLLHRVVPHGQSFHQQYAGIFHFQIWQYGEWVDVVIDDRLPVRDGKLLF # LHSAEGAEFWSALLEKAYAKLNGSYEALSGGSTSEGFEDFTGGVTEMFELKKAPPELYSIICRAVERGSLLGCSIDISGFFEMEAMTFKKLVKGHAYS # VTGVDEVEYRGSPVKLLRVRNPWGEVEWTGPWSDNSKEWSGVEPSVRKRLYNRSEDGEFWMSFSDFLREFSRLEICNLTADALQASQVKKWSAALYPG # EWRRGSTAGGCRNYPATFWLNPQFKVALQEPDTESQSGCSFLVALMQKDRRRQRREGKDMETIGFAVYEVPQECAGRVGVHLKRDFFLTHESRARSEL # FINLREVSSRFCLPAGEYIIVPSTFEPQKDGDFVLRVFSERPADSQELDDEIEADLPEELELDESQIDASFKDLFRKLAGPEMEITVSKLGTILNRII # SKHKDLKTDGFAKEACRCMISLMDTTGSGTLGLTEFHVLWEKIKRYLTVFRKFDLDKSGTMSSYEMRLALEAAGFKLTNHLFQLIILRYAKDDMSIDF # DNFVTCLIRLETMFKTFKEMDADADGAVSFSFVQWITLTMFA] # end gene g261 ### # # ----- sequence number 247 (length = 2857, name = scaffold_27_3389987-3392843) ----- # # annotation: # Sequence scaffold_27_3389987-3392843 length=2857 scaffold_27_3389987-3392843 database start_codon 601 603 . + 0 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database intron 1199 1314 . + . transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database intron 1414 1521 . + . transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database intron 1755 1954 . + . transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database CDS 601 1198 . + 0 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database CDS 1315 1413 . + 2 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database CDS 1522 1754 . + 2 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database CDS 1955 2257 . + 0 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; scaffold_27_3389987-3392843 database stop_codon 2255 2257 . + 0 transcript_id "g_1782-T1.1"; gene_id "g_1782-T1"; # Predicted genes for sequence number 247 on both strands # start gene g262 scaffold_27_3389987-3392843 AUGUSTUS gene 601 2257 0.64 + . g262 scaffold_27_3389987-3392843 AUGUSTUS transcript 601 2257 0.64 + . g262.t1 scaffold_27_3389987-3392843 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS intron 1199 1314 1 + . transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS intron 1414 1521 1 + . transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS intron 1755 1954 0.99 + . transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS CDS 601 1198 0.64 + 0 transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS CDS 1315 1413 1 + 2 transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS CDS 1522 1754 0.99 + 2 transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS CDS 1955 2257 1 + 0 transcript_id "g262.t1"; gene_id "g262"; scaffold_27_3389987-3392843 AUGUSTUS stop_codon 2255 2257 . + 0 transcript_id "g262.t1"; gene_id "g262"; # protein sequence = [MWMTKVVAVALLATVASAATAASPDKVLSNHAAILADTSANLAFNLYQNVAKEKGLENILISPVVVASSLGLVALGGK # ASTASQVKAVLSAEKVKDEQLHAGLAELLKEVSDPEARNVTWKISSRLYGPSSVNFAADFVKSSKKHYNCDHSKINFRDKKSALSSINEWAAKSTDGK # LPEVTKEVEKTDGAMIVNAMFFKPHWNEQFHHTMVDNRGFLVSRSFTVGVPMMHRTGIYGYYDDKVNKLYVLSMPLAHKKSSLVFFMPYQVEALDRLE # KLLNKKQLDTWMGQLEETAVAVSLPKVSMEVSHNLQKHLGELGLTEAVDKSKADLSNISGKKDLYLANVFHASAMEWDTAGNPVDHSIFSSDKMKNPK # LFYADHPFIFLVKDNKTNSILFIGRMVRPKGEKMRDEL] # end gene g262 ### # # ----- sequence number 248 (length = 4339, name = scaffold_27_4185127-4189465) ----- # # annotation: # Sequence scaffold_27_4185127-4189465 length=4339 scaffold_27_4185127-4189465 database start_codon 601 603 . + 0 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 900 1322 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 1366 1489 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 1560 1639 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 1703 1839 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 2002 3402 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database intron 3502 3632 . + . transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 601 899 . + 0 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 1323 1365 . + 1 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 1490 1559 . + 0 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 1640 1702 . + 2 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 1840 2001 . + 2 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 3403 3501 . + 2 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database CDS 3633 3739 . + 2 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; scaffold_27_4185127-4189465 database stop_codon 3737 3739 . + 0 transcript_id "g_1752-T1.1"; gene_id "g_1752-T1"; # Predicted genes for sequence number 248 on both strands # start gene g263 scaffold_27_4185127-4189465 AUGUSTUS gene 1 3739 0.6 + . g263 scaffold_27_4185127-4189465 AUGUSTUS transcript 1 3739 0.6 + . g263.t1 scaffold_27_4185127-4189465 AUGUSTUS intron 1 1639 0.85 + . transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS intron 1703 1839 0.96 + . transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS intron 2759 2843 0.67 + . transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS intron 3095 3402 0.99 + . transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS intron 3502 3632 1 + . transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS CDS 1640 1702 0.86 + 2 transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS CDS 1840 2758 0.96 + 2 transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS CDS 2844 3094 0.67 + 1 transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS CDS 3403 3501 0.99 + 2 transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS CDS 3633 3739 1 + 2 transcript_id "g263.t1"; gene_id "g263"; scaffold_27_4185127-4189465 AUGUSTUS stop_codon 3737 3739 . + 0 transcript_id "g263.t1"; gene_id "g263"; # protein sequence = [HKYEGVKFEKGNCGVSIMRSGEAMEQGLRDCCRSIRIGKILIQSDEDTQKAKVYYAKFPPDINRRKVLLMYPILSEYA # PILSERAPILSERAPILSERAPILSERAPILRERAPILRERAPILRERAPILSERAPILSERAPILSERAPILSERAPILSERAPILSERAPVLSERA # PVLSERAPILSERAPILSERGPILSERAPILSERAPVLSERAPILSERAPILSERAPVLSERAPILSERAPILSERAPVLSERAPILSERAPILSERA # PILSERAPILSERAPVLSERAPVLSERAPVLSERAPVLSERAPVLRERAPVLNERAPILSERAPILSERAPILSERAPILSERAPILRERAPILRERA # PILSERAPILRERAPILSERAPILSERAPILSERAPILSTGNTVIEAVRVLTEHGLQAKHIILLSLFSTPHGAKSIVEEFPDITILTTEVHPVAPTHF # GQRYFGTD] # end gene g263 ### # # ----- sequence number 249 (length = 3511, name = scaffold_27_4805081-4808591) ----- # # annotation: # Sequence scaffold_27_4805081-4808591 length=3511 scaffold_27_4805081-4808591 database start_codon 601 603 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 718 964 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 1034 1152 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 1232 1560 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 1629 1860 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 1961 2213 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 2265 2479 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database intron 2540 2846 . + . transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 601 717 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 965 1033 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 1153 1231 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 1561 1628 . + 2 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 1861 1960 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 2214 2264 . + 2 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 2480 2539 . + 2 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database CDS 2847 2911 . + 2 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; scaffold_27_4805081-4808591 database stop_codon 2909 2911 . + 0 transcript_id "g_1757-T1.1"; gene_id "g_1757-T1"; # Predicted genes for sequence number 249 on both strands # start gene g264 scaffold_27_4805081-4808591 AUGUSTUS gene 601 2911 0.44 + . g264 scaffold_27_4805081-4808591 AUGUSTUS transcript 601 2911 0.44 + . g264.t1 scaffold_27_4805081-4808591 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 718 964 0.96 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 1034 1152 0.94 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 1232 1560 0.99 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 1629 1860 0.97 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 1961 2213 0.88 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 2265 2479 0.6 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS intron 2540 2846 1 + . transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 601 717 0.8 + 0 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 965 1033 0.94 + 0 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 1153 1231 0.99 + 0 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 1561 1628 1 + 2 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 1861 1960 0.97 + 0 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 2214 2264 0.6 + 2 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 2480 2539 1 + 2 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS CDS 2847 2911 1 + 2 transcript_id "g264.t1"; gene_id "g264"; scaffold_27_4805081-4808591 AUGUSTUS stop_codon 2909 2911 . + 0 transcript_id "g264.t1"; gene_id "g264"; # protein sequence = [MCAMRVDAKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKAIQVGEKVITLGIWDTAGSERYEAMSRIYY # RGARAAIVCYDLTDSSSFQRARFWVKELQNCEEHCKIYLCGTKSDLVESDRGLRQVDYHDVQDFADEIGAQNFETSSKTGNNVDELFRKVAEDYNSIA # FQFMTEETGVDLGQKKDSYFYACCHN] # end gene g264 ### # # ----- sequence number 250 (length = 8966, name = scaffold_27_4938043-4947008) ----- # # annotation: # Sequence scaffold_27_4938043-4947008 length=8966 scaffold_27_4938043-4947008 database start_codon 601 603 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 712 1003 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 1080 1508 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 1637 1953 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 3004 3162 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 3242 3599 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 3725 3943 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 4499 4638 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 4978 5372 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 5423 5525 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 5669 5937 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 5997 6145 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 6456 6797 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 6886 7035 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 7151 7735 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 7785 7937 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database intron 7981 8161 . + . transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 601 711 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 1004 1079 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 1509 1636 . + 2 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 1954 3003 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 3163 3241 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 3600 3724 . + 2 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 3944 4498 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 4639 4977 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 5373 5422 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 5526 5668 . + 1 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 5938 5996 . + 2 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 6146 6455 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 6798 6885 . + 2 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 7036 7150 . + 1 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 7736 7784 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 7938 7980 . + 2 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database CDS 8162 8366 . + 1 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; scaffold_27_4938043-4947008 database stop_codon 8364 8366 . + 0 transcript_id "g_1758-T1.1"; gene_id "g_1758-T1"; # Predicted genes for sequence number 250 on both strands # start gene g265 scaffold_27_4938043-4947008 AUGUSTUS gene 601 8366 0.12 + . g265 scaffold_27_4938043-4947008 AUGUSTUS transcript 601 8366 0.12 + . g265.t1 scaffold_27_4938043-4947008 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 712 1003 0.52 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 1080 1508 0.86 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 1637 1953 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 3004 3162 0.37 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 3242 3599 0.41 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 3725 3943 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 4499 4638 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 4978 5372 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 5423 5525 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 5669 5937 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 5997 6145 0.96 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 6456 6797 0.91 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 6886 7035 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 7151 7735 0.93 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 7785 7937 1 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS intron 7981 8161 0.98 + . transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 601 711 0.75 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 1004 1079 0.52 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 1509 1636 0.97 + 2 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 1954 3003 0.4 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 3163 3241 0.37 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 3600 3724 1 + 2 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 3944 4498 1 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 4639 4977 1 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 5373 5422 1 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 5526 5668 1 + 1 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 5938 5996 0.96 + 2 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 6146 6455 0.91 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 6798 6885 0.99 + 2 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 7036 7150 0.93 + 1 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 7736 7784 1 + 0 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 7938 7980 0.98 + 2 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS CDS 8162 8366 1 + 1 transcript_id "g265.t1"; gene_id "g265"; scaffold_27_4938043-4947008 AUGUSTUS stop_codon 8364 8366 . + 0 transcript_id "g265.t1"; gene_id "g265"; # protein sequence = [MPRKKRETKESVDALRKRPRRDVQDEETVVVSDSDDEDGDFLPPPCSRDGRRRERERKGPSNVDMTEEQMFDLAVRLS # EQEASKAALRLRQEEEAVRKAIDESLCGDLTSTQPTSESLLGVGPTQPCPSSQDQSQGLISQEDPDSTTIQPIRRKLSYPNHRAHREAAVGASSPRLG # ADLDGQERWRKNEGSVLLEMPDLSQTQKLCSQPSPSASPSASPSASHSASPPSQVSQTGLKMLASSQPASASRGTAPVFPDCSPVLRIPRLSQNLLAN # CRSSGFLCSQQGFPEGTRFPPLKCPASPDAGVSKTKGSVLPKAHDPGFPVTCSPASAGTDRTTIPKSPALSRTDCVTFFESDGEEETQIISDCPKSPV # FPSSRPITDKEMRSAVSPPSSANERRGKDNCPTHPSPTNSDVNSRAPPLQCLSQSRTSLSLKRRQTPKASQAEEVLGRDKISPDDVDQEGERDKWSSH # PSSLSDERARPAPEEEEEELSREAGVESLQELSSNMVLRWSEEEEEEEEDLAMLPTALSPSPIFPKEDPLPQPDTQQDSPLPQPEPQQDPQLPQPDTQ # QDPSLPSHTPRPSSPPHSHASHAPGPSLDPGPDPPGRSLDLVPGPHKCQLADSQGESKAKRPRRKFTHQGMYAVGAPSPSQDSVAGTCQPEAKRANHL # QARGPSGQTSIPREEQGGGGAVRYYWGVPFCPQGQDPDIYTQVILAQLEVYEKTLKETQRTLLRKAEWGEAILPGPPNTGLSSRAGRRRRALAPRLPE # EEEEEERSVGKRKETEEEEEVEVVEDEEQEGGKAGEERGRRGWGCETLLLSSPEPEEKSPSPVFGHSRLLLLPRRLRRGERGARQTPASPGEEERTAG # EEGEEEEERGEVKLEMGGSDVCPETQLSDDDRTQDLMVTSPAQPQRETALPQPQRESAQEEEEEEGMEVEVDEEVGIFPSRGQDVGMEEEGSSRSRGG # DPDPDPPRMECPMCMQLFPLGEIEMHAAYCDGAPGGALEDMDTQEDSQVSVKTRRKRTRRGEIVGGEQPSSSACDTNRPPPPREKCFLCQKLFPLRDY # ERHVEQCIQQKTTARPGQSGTLLSALDQTDSKERGRAGVGSCDLSLRSSVLAERRGQGGAGGQECPGPGYPVSTSPIRSFTSISEADCLIDFKHQFNS # TKPSRGGKGGGGRRRAYR] # end gene g265 ### # # ----- sequence number 251 (length = 8008, name = scaffold_27_5117440-5125447) ----- # # annotation: # Sequence scaffold_27_5117440-5125447 length=8008 scaffold_27_5117440-5125447 database start_codon 601 603 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 646 1275 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 1414 1690 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 1880 2633 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 2743 3243 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 3345 3494 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 3617 3908 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 4030 4117 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 4248 4478 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 4584 4764 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 4944 5160 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 5271 5689 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 5796 6179 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 6353 6445 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database intron 6694 7298 . + . transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 601 645 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 1276 1413 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 1691 1879 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 2634 2742 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 3244 3344 . + 2 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 3495 3616 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 3909 4029 . + 1 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 4118 4247 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 4479 4583 . + 2 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 4765 4943 . + 2 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 5161 5270 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 5690 5795 . + 1 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 6180 6352 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 6446 6693 . + 1 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database CDS 7299 7408 . + 2 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; scaffold_27_5117440-5125447 database stop_codon 7406 7408 . + 0 transcript_id "g_1760-T1.1"; gene_id "g_1760-T1"; # Predicted genes for sequence number 251 on both strands # start gene g266 scaffold_27_5117440-5125447 AUGUSTUS gene 601 7408 0.78 + . g266 scaffold_27_5117440-5125447 AUGUSTUS transcript 601 7408 0.78 + . g266.t1 scaffold_27_5117440-5125447 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 646 1275 0.96 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 1414 1690 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 1880 2633 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 2743 3243 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 3345 3494 0.85 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 3617 3908 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 4030 4117 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 4248 4478 0.95 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 4584 4764 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 4944 5160 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 5271 5689 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 5796 6179 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 6353 6445 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS intron 6694 7298 1 + . transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 601 645 0.97 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 1276 1413 0.99 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 1691 1879 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 2634 2742 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 3244 3344 0.85 + 2 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 3495 3616 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 3909 4029 1 + 1 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 4118 4247 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 4479 4583 0.95 + 2 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 4765 4943 1 + 2 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 5161 5270 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 5690 5795 1 + 1 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 6180 6352 1 + 0 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 6446 6693 1 + 1 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS CDS 7299 7408 1 + 2 transcript_id "g266.t1"; gene_id "g266"; scaffold_27_5117440-5125447 AUGUSTUS stop_codon 7406 7408 . + 0 transcript_id "g266.t1"; gene_id "g266"; # protein sequence = [MGDTVTEYTSRLQQQEREIKTLSAEIEGLKNPASQPVASPNLDELREENAKLKYRLNILKRSLQEERSQCSKTMMNIN # QRLQEVFGEAIRAACPDLEDPPLAVTPNQQAKFGDYQCNSAMAMAQMMKSKGLKVNPREIAEKIVQNLPDNELVEKTEIAGPGFINIHLKRTFVSKLL # TNLLVNGVQPPPLTSRKKVVVDFSSPNIAKEMHVGHLRSTIIGDSMCRLFEFLGYDVLRLNHVGDWGTQFGMLIAHLQDKFPNYLTVSPPIGDLQSFY # KESKKRFDEDEVFKKRAYQCVVRLQSKEPDFIKAWNLICDVSRNEFQKVYSCLDIHILERGESFYQDMMTAVVQEFEQKGLVQMDEGRKIVFSPGYSV # PLTVVKSDGGYTYDTSDLAALRQRLFLEKADVIIYVTDSGQASHFQLVFAAAQMIGWYDPKVTRVEHAGFGVVLGEDKKKFKTRSGDTVRLMDLLGEG # LKRSMDKLKDKERDKVLTPEELTKAQRSVAFGCIKYADLSHNRINDYVFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANVDEPTLRKAAGSTEVPLA # HDKEWKLGRCILRFPEILQKILEDLLLHTLCDYLYELATTFTEFYDSCYCVEKDRQTGEVIKVNMGRMLLCDATASIMAQGFNILGINPVQRM] # end gene g266 ### # # ----- sequence number 252 (length = 4833, name = scaffold_27_6249768-6254600) ----- # # annotation: # Sequence scaffold_27_6249768-6254600 length=4833 scaffold_27_6249768-6254600 database start_codon 601 603 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 664 864 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 1034 1501 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 1549 1923 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 1993 2201 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 2295 2682 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 2797 2943 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 3004 3149 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 3302 3608 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database intron 3695 4117 . + . transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 601 663 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 865 1033 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 1502 1548 . + 2 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 1924 1992 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 2202 2294 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 2683 2796 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 2944 3003 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 3150 3301 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 3609 3694 . + 1 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database CDS 4118 4233 . + 2 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; scaffold_27_6249768-6254600 database stop_codon 4231 4233 . + 0 transcript_id "g_1766-T1.1"; gene_id "g_1766-T1"; # Predicted genes for sequence number 252 on both strands # start gene g267 scaffold_27_6249768-6254600 AUGUSTUS gene 325 4233 0.19 + . g267 scaffold_27_6249768-6254600 AUGUSTUS transcript 325 4233 0.19 + . g267.t1 scaffold_27_6249768-6254600 AUGUSTUS start_codon 325 327 . + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 397 864 0.58 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 1034 1501 1 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 1549 1923 1 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 1993 2201 1 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 2295 2682 1 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 2797 2943 0.99 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 3004 3149 0.99 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 3302 3608 0.9 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS intron 3755 4117 0.59 + . transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 325 396 0.47 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 865 1033 0.98 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 1502 1548 1 + 2 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 1924 1992 1 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 2202 2294 1 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 2683 2796 1 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 2944 3003 0.99 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 3150 3301 0.9 + 0 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 3609 3754 0.59 + 1 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS CDS 4118 4233 1 + 2 transcript_id "g267.t1"; gene_id "g267"; scaffold_27_6249768-6254600 AUGUSTUS stop_codon 4231 4233 . + 0 transcript_id "g267.t1"; gene_id "g267"; # protein sequence = [MRWTLLYRCDDVVIGAMLPRRCSYVFLIAHFTAGTVDLTRHEKEKYFLTSTGEKKPFPSLHDPSSCELSVVVPSYNEE # LRLPVMMEEAMEYLENRQKQHPAFTYEVIVVDDGSKDKTTEVALKYSKQYGCDKVRVLTQQRNRGKGGAVRMGTLSSRGKLILMADADGATKFADLVK # VEAGLHDIQNKPNNMAISCGSRAHLEHDSVAQRSMFRTFLMYGFHFLVWFFCVRGIKDTQCGFKLFTREAALQIFSSMHVERWAFDVELLYIAQCFQI # PIAEVAVNWTEIEGDWPDTALNLLQGNMQTEMSCSKLVPVWSWLQMGRDLVVIRLRYITGAWKLESPRKTD] # end gene g267 ### # # ----- sequence number 253 (length = 3157, name = scaffold_27_7403706-7406862) ----- # # annotation: # Sequence scaffold_27_7403706-7406862 length=3157 scaffold_27_7403706-7406862 database start_codon 601 603 . + 0 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database intron 887 1258 . + . transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database intron 1440 1532 . + . transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database intron 1657 2317 . + . transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database CDS 601 886 . + 0 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database CDS 1259 1439 . + 2 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database CDS 1533 1656 . + 1 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database CDS 2318 2557 . + 0 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; scaffold_27_7403706-7406862 database stop_codon 2555 2557 . + 0 transcript_id "g_1770-T1.1"; gene_id "g_1770-T1"; # Predicted genes for sequence number 253 on both strands # start gene g268 scaffold_27_7403706-7406862 AUGUSTUS gene 601 2557 0.93 + . g268 scaffold_27_7403706-7406862 AUGUSTUS transcript 601 2557 0.93 + . g268.t1 scaffold_27_7403706-7406862 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS intron 887 1258 1 + . transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS intron 1440 1532 0.96 + . transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS intron 1657 2317 0.97 + . transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS CDS 601 886 1 + 0 transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS CDS 1259 1439 1 + 2 transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS CDS 1533 1656 0.96 + 1 transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS CDS 2318 2557 0.97 + 0 transcript_id "g268.t1"; gene_id "g268"; scaffold_27_7403706-7406862 AUGUSTUS stop_codon 2555 2557 . + 0 transcript_id "g268.t1"; gene_id "g268"; # protein sequence = [MSKKVAVVTGGNKGIGFAIVKELCKAKFPGDVILTARNEKLGKGAVELLKSEGFQVTFQHLDICDQGSAVKLRDFLQN # TYGGLDVLVNNAGIAFKNDATEPFGEQAEVTMRTNFWGTLWVSHALIPILRPNARVVNVSSFVSKRALDQCSPQLQAKFRDPKLTEEELCGLMGEFVT # AAQNGSHQAEGWPNTAYGTTKIGATVLSMIQARELTKTRAGDGILLNACCPGWVRTDMAGDKAPKSPEEGAQTPTYLALLPAGAKEPHGQLVWDKVVQ # EW] # end gene g268 ### # # ----- sequence number 254 (length = 6276, name = scaffold_27_7521677-7527952) ----- # # annotation: # Sequence scaffold_27_7521677-7527952 length=6276 scaffold_27_7521677-7527952 database start_codon 601 603 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 665 1136 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 1276 1844 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 1940 3446 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 3533 3874 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 3971 4362 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 4488 4696 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database intron 4911 5634 . + . transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 601 664 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 1137 1275 . + 2 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 1845 1939 . + 1 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 3447 3532 . + 2 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 3875 3970 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 4363 4487 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 4697 4910 . + 1 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database CDS 5635 5676 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; scaffold_27_7521677-7527952 database stop_codon 5674 5676 . + 0 transcript_id "g_1774-T1.1"; gene_id "g_1774-T1"; # Predicted genes for sequence number 254 on both strands # start gene g269 scaffold_27_7521677-7527952 AUGUSTUS gene 601 5676 0.65 + . g269 scaffold_27_7521677-7527952 AUGUSTUS transcript 601 5676 0.65 + . g269.t1 scaffold_27_7521677-7527952 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 665 1136 1 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 1276 1844 1 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 1940 3446 0.72 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 3533 3874 1 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 3971 4362 1 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 4488 4696 1 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS intron 4911 5634 0.95 + . transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 601 664 0.95 + 0 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 1137 1275 1 + 2 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 1845 1939 0.72 + 1 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 3447 3532 1 + 2 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 3875 3970 1 + 0 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 4363 4487 1 + 0 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 4697 4910 1 + 1 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS CDS 5635 5676 0.94 + 0 transcript_id "g269.t1"; gene_id "g269"; scaffold_27_7521677-7527952 AUGUSTUS stop_codon 5674 5676 . + 0 transcript_id "g269.t1"; gene_id "g269"; # protein sequence = [MANLNWKPFIYGGMASIVAEFGTFPIDLTKTRLQVQGQSQYMEVRYRGMFHALFRIGKEEGIKALYSGISPALLRQAS # YGTIKIGTYNTLKGLFVSRPEDETMVINVFCGVVSGVLSSSLANPTDVLKIRMQAQGSLLQGSMMSNFINIYQNEGTRGLWRGVIPTAQRAAIVVGVE # LPVYDITKKHLIRSGTMGDNILTHFVSSFTCGLAGALASNPVDVVRTRMMNQRVLSGGPLYKGTLDGVMQTWKNEGFFALYKGFWPNWLRLGPWNIIF # FITFEQLKKMPL] # end gene g269 ### # # ----- sequence number 255 (length = 2436, name = scaffold_28_300720-303155) ----- # # annotation: # Sequence scaffold_28_300720-303155 length=2436 scaffold_28_300720-303155 database start_codon 601 603 . + 0 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database intron 646 812 . + . transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database intron 899 1104 . + . transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database intron 1267 1601 . + . transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database CDS 601 645 . + 0 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database CDS 813 898 . + 0 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database CDS 1105 1266 . + 1 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database CDS 1602 1836 . + 1 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; scaffold_28_300720-303155 database stop_codon 1834 1836 . + 0 transcript_id "g_1783-T1.1"; gene_id "g_1783-T1"; # Predicted genes for sequence number 255 on both strands # start gene g270 scaffold_28_300720-303155 AUGUSTUS gene 1 1836 0.82 + . g270 scaffold_28_300720-303155 AUGUSTUS transcript 1 1836 0.82 + . g270.t1 scaffold_28_300720-303155 AUGUSTUS intron 127 320 1 + . transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS intron 646 812 0.98 + . transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS intron 899 1104 1 + . transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS intron 1267 1601 1 + . transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS CDS 1 126 0.84 + 1 transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS CDS 321 645 0.98 + 1 transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS CDS 813 898 1 + 0 transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS CDS 1105 1266 1 + 1 transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS CDS 1602 1836 1 + 1 transcript_id "g270.t1"; gene_id "g270"; scaffold_28_300720-303155 AUGUSTUS stop_codon 1834 1836 . + 0 transcript_id "g270.t1"; gene_id "g270"; # protein sequence = [CDAHRTEHVYRVYVSTFLGFGGNAARQRYEENLFRNTVTRNKLLDQHVGDTAESPLLDPCLPTDLQDEVGPADRRLHL # RGTGDFDQCRRILQPFLNHTNQTHSSLSGVYQPPIDYSNSQFYGFSEFYYCTEDVLRMGGDYNSSKYSSAAKSYCATQWKTLKERFDAGLYASHADMH # RLKYQCFKSAWMYEVFHSGFSFPADYKNLKTALLVYDKEVQWTLGAILYRTRFLPLRDMQQESLKGVHSHWRHSFSFVNNHFLFLACFLVVLLSILLY # LLRLRRIHRRTAQRCSSSSVQWLEEGLVSSSLPITL] # end gene g270 ### # # ----- sequence number 256 (length = 2273, name = scaffold_28_2697325-2699597) ----- # # annotation: # Sequence scaffold_28_2697325-2699597 length=2273 scaffold_28_2697325-2699597 database start_codon 601 603 . + 0 transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database intron 780 1271 . + . transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database intron 1484 1644 . + . transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database CDS 601 779 . + 0 transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database CDS 1272 1483 . + 1 transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database CDS 1645 1847 . + 2 transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; scaffold_28_2697325-2699597 database stop_codon 1845 1847 . + 0 transcript_id "g_1797-T1.1"; gene_id "g_1797-T1"; # Predicted genes for sequence number 256 on both strands # start gene g271 scaffold_28_2697325-2699597 AUGUSTUS gene 1 1847 0.87 + . g271 scaffold_28_2697325-2699597 AUGUSTUS transcript 1 1847 0.87 + . g271.t1 scaffold_28_2697325-2699597 AUGUSTUS intron 1 502 0.94 + . transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS intron 780 1271 0.93 + . transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS intron 1484 1644 1 + . transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS CDS 503 779 0.94 + 2 transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS CDS 1272 1483 1 + 1 transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS CDS 1645 1847 1 + 2 transcript_id "g271.t1"; gene_id "g271"; scaffold_28_2697325-2699597 AUGUSTUS stop_codon 1845 1847 . + 0 transcript_id "g271.t1"; gene_id "g271"; # protein sequence = [ATGLQGAFRNRVPPPSSAFSRARRTERNVREVMSYISRLPPSWNDRPPPRQVDVDLSSPGLAVVQLERLLYTGKAIVC # HADEVWPKLYIGDQSSADNRSGLALHGVTHVLNAAHSRLRGGAETYQGMNITYLGIEGRDCCNYDMSANFQTAADFINRALSGGGTVLVHCAVGVSRS # ATLVLAYLMLKQHLTLVEAICAVKDNRGIIPNRGFLRQLIKLDAKIHGKHRQS] # end gene g271 ### # # ----- sequence number 257 (length = 9138, name = scaffold_28_3897712-3906849) ----- # # annotation: # Sequence scaffold_28_3897712-3906849 length=9138 scaffold_28_3897712-3906849 database start_codon 601 603 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 661 1921 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 1997 2193 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 2385 2758 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 2883 3237 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 3360 3889 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 4008 4185 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 4251 4365 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 4445 4536 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 4684 4871 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 4971 5226 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 5394 5882 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 6046 6273 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 6412 6581 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 6660 6756 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 6858 7220 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 7326 7559 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 7633 8092 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database intron 8208 8389 . + . transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 601 660 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 1922 1996 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 2194 2384 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 2759 2882 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 3238 3359 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 3890 4007 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 4186 4250 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 4366 4444 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 4537 4683 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 4872 4970 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 5227 5393 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 5883 6045 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 6274 6411 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 6582 6659 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 6757 6857 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 7221 7325 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 7560 7632 . + 1 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 8093 8207 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database CDS 8390 8538 . + 2 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; scaffold_28_3897712-3906849 database stop_codon 8536 8538 . + 0 transcript_id "g_1810-T1.1"; gene_id "g_1810-T1"; # Predicted genes for sequence number 257 on both strands # start gene g272 scaffold_28_3897712-3906849 AUGUSTUS gene 601 8538 0.09 + . g272 scaffold_28_3897712-3906849 AUGUSTUS transcript 601 8538 0.09 + . g272.t1 scaffold_28_3897712-3906849 AUGUSTUS start_codon 601 603 . + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 661 1921 0.91 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 1997 2193 0.62 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 2385 2758 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 2883 3237 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 3360 3889 0.97 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 4008 4185 0.98 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 4251 4365 0.54 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 4445 4536 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 4684 4871 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 4971 5226 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 5394 5900 0.63 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 6046 6273 0.98 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 6412 6581 0.75 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 6660 6756 0.76 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 6858 7220 0.88 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 7326 7559 0.89 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 7633 8092 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS intron 8208 8389 1 + . transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 601 660 0.69 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 1922 1996 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 2194 2384 0.62 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 2759 2882 1 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 3238 3359 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 3890 4007 0.97 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 4186 4250 0.98 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 4366 4444 0.54 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 4537 4683 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 4872 4970 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 5227 5393 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 5901 6045 0.63 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 6274 6411 0.99 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 6582 6659 0.76 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 6757 6857 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 7221 7325 0.88 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 7560 7632 1 + 1 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 8093 8207 1 + 0 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS CDS 8390 8538 1 + 2 transcript_id "g272.t1"; gene_id "g272"; scaffold_28_3897712-3906849 AUGUSTUS stop_codon 8536 8538 . + 0 transcript_id "g272.t1"; gene_id "g272"; # protein sequence = [MAEERVMEKMKELHLDKEKECGAAEGKSGGKKAKKSSGDNVGKSELSPPPQFIDERLRLYSTLKAEHDALMAKRAEEN # SQPIKVTLPDGKVVDAESWKTTPYQVACGISQGLADSTVIAKVNKVVWDLDRPLEEDCTLQLLKFDDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGP # PIESGFYYDMFLDNEGVSSNDFPCLETLCKKIIKEKQPFERLEIKKETLLEMFKYNKFKCRILNEKVTTPTTTVYRCGPLIDLCRGPHVRHTGKIKAL # KIHKNSSTYWEGKADMESLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKLGREQDLFFFHDLSPGSCFFLPKGSFIYNSLMEFIKSEYRKRGFQEVV # TPNIYNSKLWQTSGHWQHYSENMFSFEVEKEIFALKPMNCPGHXPRSWRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCTMEQIEGEIK # GCLDFLRTVYDVFGFTFKLNLSTRPEKFLGEPEVWDQAEKQLENSLNEFGEKWVLNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTF # VSHDGDDKKRPVIIHRAILGSVERMIAILTENYGGKWPLWLSPRQVMVVPVGPTCDEYAQKIQLEFHSGGLMTDVDLDAGCTLNKKIRNAQLAQYNFI # LVVGEKEKTSETVNVRTRDNKVHGERSVQDCMKRLQELKAARSRMAEEEF] # end gene g272 ### # # ----- sequence number 258 (length = 1849, name = scaffold_28_7156174-7158022) ----- # # annotation: # Sequence scaffold_28_7156174-7158022 length=1849 scaffold_28_7156174-7158022 database start_codon 601 603 . + 0 transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database intron 678 818 . + . transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database intron 944 1052 . + . transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database CDS 601 677 . + 0 transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database CDS 819 943 . + 1 transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database CDS 1053 1249 . + 2 transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; scaffold_28_7156174-7158022 database stop_codon 1247 1249 . + 0 transcript_id "g_1829-T1.1"; gene_id "g_1829-T1"; # Predicted genes for sequence number 258 on both strands # start gene g273 scaffold_28_7156174-7158022 AUGUSTUS gene 1 1249 0.95 + . g273 scaffold_28_7156174-7158022 AUGUSTUS transcript 1 1249 0.95 + . g273.t1 scaffold_28_7156174-7158022 AUGUSTUS intron 65 449 0.96 + . transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS intron 678 818 0.99 + . transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS intron 944 1052 1 + . transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS CDS 1 64 0.96 + 2 transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS CDS 450 677 1 + 1 transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS CDS 819 943 0.99 + 1 transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS CDS 1053 1249 1 + 2 transcript_id "g273.t1"; gene_id "g273"; scaffold_28_7156174-7158022 AUGUSTUS stop_codon 1247 1249 . + 0 transcript_id "g273.t1"; gene_id "g273"; # protein sequence = [QLVANNPDWIFISPFDDPLIWEGHTSLVEELESQLPVKPGAVVLSVGGGGLLNGVVEGLRRAGWEDVPIVAMETVGAH # SLNAAMKAGKLVTLPEITSIATTLGLTRVSAQTLKLVGEHTVFSELVTDQEAVNAVERFVDDEKILVEPACGAALAAVYCDIVGRLQKEGKLAKDLGP # VVVVVCGGNNISIEQLWRLKKQLGMSS] # end gene g273 ### # # ----- sequence number 259 (length = 3686, name = scaffold_28_9775816-9779501) ----- # # annotation: # Sequence scaffold_28_9775816-9779501 length=3686 scaffold_28_9775816-9779501 database start_codon 601 603 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 637 915 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 1030 1111 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 1203 1309 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 1390 1467 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 1525 1631 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 1726 2270 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 2367 2565 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 2625 2782 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database intron 2906 3026 . + . transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 601 636 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 916 1029 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 1112 1202 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 1310 1389 . + 2 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 1468 1524 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 1632 1725 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 2271 2366 . + 2 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 2566 2624 . + 2 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 2783 2905 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database CDS 3027 3086 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; scaffold_28_9775816-9779501 database stop_codon 3084 3086 . + 0 transcript_id "g_1845-T1.1"; gene_id "g_1845-T1"; # Predicted genes for sequence number 259 on both strands # start gene g274 scaffold_28_9775816-9779501 AUGUSTUS gene 1 3086 0.39 + . g274 scaffold_28_9775816-9779501 AUGUSTUS transcript 1 3086 0.39 + . g274.t1 scaffold_28_9775816-9779501 AUGUSTUS intron 1 541 0.93 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 637 915 0.98 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 1030 1111 0.95 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 1203 1309 0.99 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 1390 1467 0.99 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 1525 1631 1 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 2125 2270 0.63 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 2367 2565 1 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 2625 2782 0.8 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS intron 2906 3026 1 + . transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 542 636 1 + 2 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 916 1029 0.98 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 1112 1202 0.95 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 1310 1389 0.99 + 2 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 1468 1524 1 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 1632 2124 0.63 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 2271 2366 1 + 2 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 2566 2624 0.8 + 2 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 2783 2905 1 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS CDS 3027 3086 1 + 0 transcript_id "g274.t1"; gene_id "g274"; scaffold_28_9775816-9779501 AUGUSTUS stop_codon 3084 3086 . + 0 transcript_id "g274.t1"; gene_id "g274"; # protein sequence = [TTEKTLIDILTHRTNAQRQMICKAYLEDTGRTLVQDLKGDTDGHFEKLLVALATPQTLYDCQEVRRAIEGVGTDDSIL # IEIFSSRSNQQIKVLCDAYLKETERKLTFDLKKETTKEYGAALLLLAEGKRDENTQVDAGKAKEDAKALYNAGEKKWGTDEAKFIEILCQRSLPQLRQ # SRLRLCPCLCPRLCPRTHPHPRLCPRTPSSPPPLSPHPPLSPPPPLSPQPSSPPPLSPHPSSPPPLSPHPSSPPPLSPHPSSPPPLSPHPSSPPPLSP # HPPHPASPHPSSPPSVPAPSSVPAPSSVLTPASVPSLVEFNSVSGKTLQQSIEGEMSGSLEDLLVAIVKCVKSVPAYFAERLHQSMKGVGTDEDTLIR # IMVSRSEVDLLDIRAEFKKHYQHSLHSAIKSDVSGDLGACLLEICGGDD] # end gene g274 ### # # ----- sequence number 260 (length = 5338, name = scaffold_58_5224-10561) ----- # # annotation: # Sequence scaffold_58_5224-10561 length=5338 scaffold_58_5224-10561 database start_codon 601 603 . + 0 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 687 1166 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 1291 1432 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 1531 2174 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 2300 2660 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 2781 3104 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 3213 3401 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 3564 3735 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 3852 3937 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database intron 4075 4605 . + . transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 601 686 . + 0 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 1167 1290 . + 1 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 1433 1530 . + 0 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 2175 2299 . + 1 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 2661 2780 . + 2 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 3105 3212 . + 2 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 3402 3563 . + 2 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 3736 3851 . + 2 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 3938 4074 . + 0 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database CDS 4606 4738 . + 1 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; scaffold_58_5224-10561 database stop_codon 4736 4738 . + 0 transcript_id "g_2195-T1.1"; gene_id "g_2195-T1"; # Predicted genes for sequence number 260 on both strands # start gene g275 scaffold_58_5224-10561 AUGUSTUS gene 40 4738 0.4 + . g275 scaffold_58_5224-10561 AUGUSTUS transcript 40 4738 0.4 + . g275.t1 scaffold_58_5224-10561 AUGUSTUS start_codon 40 42 . + 0 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 687 1166 0.98 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 1291 1432 0.89 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 1531 2174 0.95 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 2300 2660 0.99 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 2781 3104 1 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 3213 3401 0.97 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 3564 3735 0.74 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 3852 3937 1 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS intron 4075 4605 1 + . transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 40 686 0.58 + 0 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 1167 1290 0.98 + 1 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 1433 1530 0.89 + 0 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 2175 2299 1 + 1 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 2661 2780 0.99 + 2 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 3105 3212 1 + 2 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 3402 3563 0.97 + 2 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 3736 3851 0.76 + 2 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 3938 4074 1 + 0 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS CDS 4606 4738 1 + 1 transcript_id "g275.t1"; gene_id "g275"; scaffold_58_5224-10561 AUGUSTUS stop_codon 4736 4738 . + 0 transcript_id "g275.t1"; gene_id "g275"; # protein sequence = [MKSTTYQPRPPLMPRPSGLMKVGKNSSLEEKGRRLRRSSQESLTDPAETGSSTDSLKDDHAVSDVFTFSGAATLRNEQ # NSVSVSAQVPTLSPVFRGRGHSLSEFEMQPHNQSECAEQRLRSSKMRLSPLHPPRALPALEQSLVSATLRTSNRIDRDCVDYGMLVGRGGPRPGERLL # RNFSDSRLLENMVSDSSSVNSMKSTISVLNPIRPRDVRNRSFLEGSVLGSGALLGAEELDRYFPDRTLGIYVATWNMQGEKGLPNNLDDLLLPTDSEF # AQDFYIIGVQEGCPDRREWEIRLQEALGPYYVMLYTACHGVLYLTVFVRRDLIWFCSEVEHATVTTRIISQIKTKGAVGIGFTFFGTSFLFITSHFTS # GDSKVYERVLDYNKIIEALALPKGLPDTNPYRSTASDVTTRYDEVFWFGDFNFRLSKDRVGVETILKHASGIDMTPLLLHDQLSKEMKEGSIFKGFQE # APIHFPPTYKFDIGCDIYDSTSKQRTPSYTDRILYRNRQAEDIKVVKYTSCSSIRTSDHRPVMGMFQVKLRPGRDNIPLGAGQFDRSLYLEGIKRRIT # RELKRREALKNQGSSAICSIS] # end gene g275 ### # # ----- sequence number 261 (length = 3575, name = scaffold_340_443-4017) ----- # # annotation: # Sequence scaffold_340_443-4017 length=3575 scaffold_340_443-4017 database start_codon 601 603 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database intron 821 1861 . + . transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database intron 2086 2269 . + . transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database intron 2360 2477 . + . transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database intron 2526 2736 . + . transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database intron 2842 2966 . + . transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 601 820 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 1862 2085 . + 2 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 2270 2359 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 2478 2525 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 2737 2841 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database CDS 2967 2975 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; scaffold_340_443-4017 database stop_codon 2973 2975 . + 0 transcript_id "g_1935-T1.1"; gene_id "g_1935-T1"; # Predicted genes for sequence number 261 on both strands # (none) a-posteriori probability of viterbi path ---------------------------------------- a-posteriori probability of correct path 261 times were the paths equally likely (identical). sorted quotients of the rest: 0 quotients were between 1 and 10 ******* Evaluation of gene prediction ******* ---------------------------------------------\ | sensitivity | specificity | ---------------------------------------------| nucleotide level | 0.932 | 0.912 | ---------------------------------------------/ ----------------------------------------------------------------------------------------------------------\ | #pred | #anno | | FP = false pos. | FN = false neg. | | | | total/ | total/ | TP |--------------------|--------------------| sensitivity | specificity | | unique | unique | | part | ovlp | wrng | part | ovlp | wrng | | | ----------------------------------------------------------------------------------------------------------| | | | | 338 | 346 | | | exon level | 2068 | 2076 | 1730 | ------------------ | ------------------ | 0.833 | 0.837 | | 2068 | 2076 | | 169 | 13 | 156 | 170 | 12 | 164 | | | ----------------------------------------------------------------------------------------------------------/ ----------------------------------------------------------------------------\ transcript | #pred | #anno | TP | FP | FN | sensitivity | specificity | ----------------------------------------------------------------------------| gene level | 275 | 261 | 78 | 197 | 183 | 0.299 | 0.284 | ----------------------------------------------------------------------------/ ------------------------------------------------------------------------\ UTR | total pred | CDS bnd. corr. | meanDiff | medianDiff | ------------------------------------------------------------------------| TSS | 66 | 0 | -1 | -1 | TTS | 3 | 0 | -1 | -1 | ------------------------------------------------------------------------| UTR | uniq. pred | unique anno | sens. | spec. | ------------------------------------------------------------------------| | true positive = 1 bound. exact, 1 bound. <= 20bp off | UTR exon level | 0 | 0 | -nan | -nan | ------------------------------------------------------------------------| UTR base level | 0 | 0 | -nan | -nan | ------------------------------------------------------------------------/ nucUTP= 0 nucUFP=0 nucUFPinside= 0 nucUFN=0 # total time: 47.9 # command line: # augustus --AUGUSTUS_CONFIG_PATH=/suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/ab_initio_parameters/augustus --species=plecoglossus_altivelis /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/augustus.training.pasa.gb.test