-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_997

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62396-T1
Couldn't classify 1422, 1545
Couldn't classify 2551, 2667
Sorry, prediction GeneMark_model.108739_t fails validation.
(AGG)	 AG	1422-1545	GT	AGG
(GGC)	 AG	1585-1677	GT	AGG
(GAG)	 AG	1703-1750	GT	GGG
(TTC)	 AG	2254-2427	GT	ACG
(GCC)	 AG	2551-2667	GT	GAG
-recovered GeneMark_model.108739_t, internal, 1422, 1545
-recovered GeneMark_model.108739_t, internal, 1585, 1677
-recovered GeneMark_model.108739_t, internal, 1703, 1750
-recovered GeneMark_model.108739_t, internal, 2254, 2427
-recovered GeneMark_model.108739_t, internal, 2551, 2667
Couldn't classify 2551, 2687
Sorry, prediction snap_scaffold_997-snap.1-T1 fails validation.
(ATG)	 AA	2294-2427	GT	ACG
(GCC)	 AG	2551-2687	GT	TGG
-recovered snap_scaffold_997-snap.1-T1, initial, 2294, 2427
-recovered snap_scaffold_997-snap.1-T1, internal, 2551, 2687

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3632
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support