-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_996

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_996-snap.1-T1
Couldn't classify 272, 277
Sorry, prediction GeneMark_model.108736_t fails validation.
(AGG)	 AG	272-277	GT	AGG
(AGG)	 AG	302-419	GT	GGG
(AAG)	 AG	449-529	AA	GAA
-recovered GeneMark_model.108736_t, terminal, 449, 529
-recovered GeneMark_model.108736_t, internal, 272, 277
-recovered GeneMark_model.108736_t, internal, 302, 419
Couldn't classify 3162, 3311
Sorry, prediction GeneMark_model.108738_t fails validation.
(ATG)	 AA	2196-2206	GT	GGG
(GAG)	 AG	2999-3136	GT	GGG
(CAA)	 AG	3162-3311	GT	CTG
-recovered GeneMark_model.108738_t, initial, 2196, 2206
-recovered GeneMark_model.108738_t, internal, 2999, 3136
-recovered GeneMark_model.108738_t, internal, 3162, 3311

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108737_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3634
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support