-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_993

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3132, 3284
Sorry, prediction GlimmerHMM_glimmerT_62393-T1 fails validation.
(ATG)	 AG	1031-1112	GT	CGG
(AAA)	 AG	3132-3284	GT	GGG
-recovered GlimmerHMM_glimmerT_62393-T1, initial, 1031, 1112
-recovered GlimmerHMM_glimmerT_62393-T1, internal, 1031, 1112
-recovered GlimmerHMM_glimmerT_62393-T1, internal, 3132, 3284
Couldn't classify 95, 208
Sorry, prediction GeneMark_model.108733_t fails validation.
(AGA)	 AG	95-208	GT	GCG
(GGG)	 AG	811-825	GT	GGG
(GGA)	 AG	851-941	GT	TGG
(GGT)	 AG	996-1036	GT	TGG
(GAT)	 AG	1213-1252	GG	AAG
-recovered GeneMark_model.108733_t, terminal, 1213, 1252
-recovered GeneMark_model.108733_t, internal, 95, 208
-recovered GeneMark_model.108733_t, internal, 811, 825
-recovered GeneMark_model.108733_t, internal, 851, 941
-recovered GeneMark_model.108733_t, internal, 996, 1036

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3650
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support