-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_992

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 245, 298
Couldn't classify 3516, 3601
Sorry, prediction snap_scaffold_992-snap.2-T1 fails validation.
(CCA)	 AG	245-298	GT	TGG
(CTG)	 AG	435-589	GT	AGG
(CGA)	 AG	689-965	GT	AGG
(TCT)	 AG	2478-2517	GT	AGG
(CTC)	 AG	3516-3601	GT	GGG
-recovered snap_scaffold_992-snap.2-T1, internal, 245, 298
-recovered snap_scaffold_992-snap.2-T1, internal, 435, 589
-recovered snap_scaffold_992-snap.2-T1, internal, 689, 965
-recovered snap_scaffold_992-snap.2-T1, internal, 2478, 2517
-recovered snap_scaffold_992-snap.2-T1, internal, 3516, 3601
Valid prediction for GeneMark_model.108731_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62392-T1
Couldn't classify 3511, 3582
Sorry, prediction Augustus_model.g41473.t1 fails validation.
(ATG)	 GA	83-173	GT	AGG
(GAA)	 AG	2518-2556	GT	AGG
(CTA)	 AG	3225-3389	GT	AGG
(GGT)	 AG	3511-3582	GT	AGG
-recovered Augustus_model.g41473.t1, initial, 83, 173
-recovered Augustus_model.g41473.t1, internal, 2518, 2556
-recovered Augustus_model.g41473.t1, internal, 3225, 3389
-recovered Augustus_model.g41473.t1, internal, 3511, 3582
Couldn't classify 3511, 3582
Sorry, prediction GeneMark_model.108730_t fails validation.
(ATG)	 CC	3251-3389	GT	AGG
(GGT)	 AG	3511-3582	GT	AGG
-recovered GeneMark_model.108730_t, initial, 3251, 3389
-recovered GeneMark_model.108730_t, internal, 3511, 3582
Couldn't classify 54, 173
Couldn't classify 3511, 3582
Sorry, prediction snap_scaffold_992-snap.1-T1 fails validation.
(GCA)	 AG	54-173	GT	AGG
(GAA)	 AG	2518-2556	GT	AGG
(CTA)	 AG	3225-3389	GT	AGG
(GGT)	 AG	3511-3582	GT	AGG
-recovered snap_scaffold_992-snap.1-T1, internal, 54, 173
-recovered snap_scaffold_992-snap.1-T1, internal, 2518, 2556
-recovered snap_scaffold_992-snap.1-T1, internal, 3225, 3389
-recovered snap_scaffold_992-snap.1-T1, internal, 3511, 3582
Valid prediction for GeneMark_model.108732_t
add_exon() Sorry, GeneMark_model.108732_t 54-199-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3605, rend_intergenic: 245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3658
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3605, rend_intergenic: 245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support