-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_991

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3090, 3127
Sorry, prediction GlimmerHMM_glimmerT_62391-T1 fails validation.
(ATG)	 CT	401-473	GT	CAG
(TAC)	 AG	1370-1476	GT	CTG
(ATG)	 AG	3090-3127	GT	AGG
-recovered GlimmerHMM_glimmerT_62391-T1, initial, 401, 473
-recovered GlimmerHMM_glimmerT_62391-T1, initial, 3090, 3127
-recovered GlimmerHMM_glimmerT_62391-T1, internal, 1370, 1476
-recovered GlimmerHMM_glimmerT_62391-T1, internal, 3090, 3127
Valid prediction for GeneMark_model.108729_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 134, 285
Couldn't classify 2180, 2282
Sorry, prediction snap_scaffold_991-snap.1-T1 fails validation.
(GGA)	 AG	134-285	GT	AGG
(GTA)	 AG	1253-1400	GT	AGG
(GAC)	 AG	2180-2282	GT	GGG
-recovered snap_scaffold_991-snap.1-T1, internal, 134, 285
-recovered snap_scaffold_991-snap.1-T1, internal, 1253, 1400
-recovered snap_scaffold_991-snap.1-T1, internal, 2180, 2282

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3658
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support