-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_990

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62390-T1
Valid prediction for Augustus_model.g41472.t1
Valid prediction for snap_scaffold_990-snap.1-T1
Couldn't classify 11, 85
Sorry, prediction GeneMark_model.108728_t fails validation.
(CAA)	 AG	11-85	GT	TTG
(GCA)	 AG	125-929	GT	GGG
(GGC)	 AG	950-970	CC	GAC
-recovered GeneMark_model.108728_t, terminal, 950, 970
-recovered GeneMark_model.108728_t, internal, 11, 85
-recovered GeneMark_model.108728_t, internal, 125, 929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3658
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support