-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_989

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108725_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62389-T1
Couldn't classify 3057, 3650
Sorry, prediction GeneMark_model.108724_t fails validation.
(ATG)	 AC	3023-3036	GT	AGG
(AGG)	 AG	3057-3650	GC	GAG
-recovered GeneMark_model.108724_t, initial, 3023, 3036
-recovered GeneMark_model.108724_t, internal, 3057, 3650
Couldn't classify 61, 124
Sorry, prediction GeneMark_model.108726_t fails validation.
(TCT)	 AG	61-124	GT	ACG
(ATG)	 AG	167-241	GT	GGG
(AGA)	 AG	361-411	GT	GAG
(AGA)	 AG	513-569	GT	GAG
(AGG)	 AG	599-631	GT	GGG
(AGA)	 AG	660-788	GT	AGG
(GGA)	 AG	1127-1142	GA	AGG
-recovered GeneMark_model.108726_t, initial, 167, 241
-recovered GeneMark_model.108726_t, terminal, 1127, 1142
-recovered GeneMark_model.108726_t, internal, 61, 124
-recovered GeneMark_model.108726_t, internal, 167, 241
-recovered GeneMark_model.108726_t, internal, 361, 411
-recovered GeneMark_model.108726_t, internal, 513, 569
-recovered GeneMark_model.108726_t, internal, 599, 631
-recovered GeneMark_model.108726_t, internal, 660, 788

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3660
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support