-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_986

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62387-T1
Couldn't classify 1614, 1742
Sorry, prediction snap_scaffold_986-snap.1-T1 fails validation.
(ATG)	 AG	262-353	GT	TTG
(TTT)	 AG	1614-1742	GT	AGG
-recovered snap_scaffold_986-snap.1-T1, initial, 262, 353
-recovered snap_scaffold_986-snap.1-T1, internal, 262, 353
-recovered snap_scaffold_986-snap.1-T1, internal, 1614, 1742
Valid prediction for GeneMark_model.108721_t
add_exon() Sorry, GeneMark_model.108721_t 1614-1746-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3694
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support