-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_985

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 327, 446
Couldn't classify 2976, 3131
Sorry, prediction snap_scaffold_985-snap.1-T1 fails validation.
(GTT)	 AG	327-446	GT	AGG
(ACG)	 AG	523-606	GT	GGG
(CCC)	 AG	1128-1179	GT	TTG
(TTG)	 AG	2976-3131	GT	CGG
-recovered snap_scaffold_985-snap.1-T1, internal, 327, 446
-recovered snap_scaffold_985-snap.1-T1, internal, 523, 606
-recovered snap_scaffold_985-snap.1-T1, internal, 1128, 1179
-recovered snap_scaffold_985-snap.1-T1, internal, 2976, 3131

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 588, 728
Couldn't classify 3141, 3453
Sorry, prediction Augustus_model.g41471.t1 fails validation.
(GAC)	 AG	588-728	GT	ACG
(AGG)	 AG	1625-1779	GT	CCG
(ACC)	 AG	2258-2348	GT	AGG
(AAG)	 AG	3141-3453	GT	TGG
-recovered Augustus_model.g41471.t1, internal, 588, 728
-recovered Augustus_model.g41471.t1, internal, 1625, 1779
-recovered Augustus_model.g41471.t1, internal, 2258, 2348
-recovered Augustus_model.g41471.t1, internal, 3141, 3453
Couldn't classify 588, 728
Sorry, prediction GlimmerHMM_glimmerT_62386-T1 fails validation.
(GAC)	 AG	588-728	GT	ACG
(AGG)	 AG	1625-1820	GT	CTG
(TCG)	 AG	2386-2486	GT	AGG
(AAG)	 AG	3141-3479	TT	AAT
-recovered GlimmerHMM_glimmerT_62386-T1, terminal, 3141, 3479
-recovered GlimmerHMM_glimmerT_62386-T1, internal, 588, 728
-recovered GlimmerHMM_glimmerT_62386-T1, internal, 1625, 1820
-recovered GlimmerHMM_glimmerT_62386-T1, internal, 2386, 2486
Couldn't classify 588, 700
Sorry, prediction GeneMark_model.108720_t fails validation.
(GAC)	 AG	588-700	GT	GAG
(AGG)	 AG	753-815	GT	GAG
(GAA)	 AG	847-861	GT	AGG
(GGG)	 AG	882-932	GT	ATG
(GGA)	 AG	977-1015	GT	GTG
(GGT)	 AG	1627-1779	GT	CCG
(GAG)	 AG	1868-1894	GT	GAG
(AGA)	 AG	1938-2120	GT	AAG
(GAA)	 AG	2150-2158	GT	GGG
(ACC)	 AG	2258-2356	GT	ACG
(GGC)	 AG	2391-2486	GT	AGG
(CAG)	 AG	2598-2630	GT	GAG
(AGG)	 AG	2713-2817	GT	TGG
(GAT)	 AG	2898-2907	GT	AGG
(AAG)	 AG	3141-3392	GT	ACG
(ACA)	 AG	3566-3583	AG	AGA
-recovered GeneMark_model.108720_t, terminal, 3566, 3583
-recovered GeneMark_model.108720_t, internal, 588, 700
-recovered GeneMark_model.108720_t, internal, 753, 815
-recovered GeneMark_model.108720_t, internal, 847, 861
-recovered GeneMark_model.108720_t, internal, 882, 932
-recovered GeneMark_model.108720_t, internal, 977, 1015
-recovered GeneMark_model.108720_t, internal, 1627, 1779
-recovered GeneMark_model.108720_t, internal, 1868, 1894
-recovered GeneMark_model.108720_t, internal, 1938, 2120
-recovered GeneMark_model.108720_t, internal, 2150, 2158
-recovered GeneMark_model.108720_t, internal, 2258, 2356
-recovered GeneMark_model.108720_t, internal, 2391, 2486
-recovered GeneMark_model.108720_t, internal, 2598, 2630
-recovered GeneMark_model.108720_t, internal, 2713, 2817
-recovered GeneMark_model.108720_t, internal, 2898, 2907
-recovered GeneMark_model.108720_t, internal, 3141, 3392

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3694
-exon list size: 50


building trellis

1.9    
3.8    
5.8    
7.7    
9.6    
11.5    
13.5    
15.4    
17.3    
19.2    
21.2    
23.1    
25.0    
26.9    
28.8    
30.8    
32.7    
34.6    
36.5    
38.5    
40.4    
42.3    
44.2    
46.2    
48.1    
50.0    
51.9    
53.8    
55.8    
57.7    
59.6    
61.5    
63.5    
65.4    
67.3    
69.2    
71.2    
73.1    
75.0    
76.9    
78.8    
80.8    
82.7    
84.6    
86.5    
88.5    
90.4    
92.3    
94.2    
96.2    
98.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support