-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_984

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41470.t1
Valid prediction for GlimmerHMM_glimmerT_62385-T1
Valid prediction for GeneMark_model.108718_t
Valid prediction for snap_scaffold_984-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3412, 3537
Sorry, prediction GeneMark_model.108716_t fails validation.
(ATG)	 TA	2442-2554	GT	TGG
(GGG)	 AG	2582-2599	GT	AGG
(AGG)	 AG	2625-2660	GT	GAG
(TAG)	 AG	2686-2703	GT	GGG
(TAG)	 AG	2734-2751	GT	GGG
(TAG)	 AG	2782-2799	GT	GGG
(GGG)	 AG	2822-2926	GT	AGG
(TGA)	 AG	2987-2998	GT	AGG
(AGA)	 AG	3169-3215	GT	AGG
(GGC)	 AG	3298-3388	GC	GAG
(GAC)	 AG	3412-3537	GT	CAG
-recovered GeneMark_model.108716_t, initial, 2442, 2554
-recovered GeneMark_model.108716_t, internal, 2582, 2599
-recovered GeneMark_model.108716_t, internal, 2625, 2660
-recovered GeneMark_model.108716_t, internal, 2686, 2703
-recovered GeneMark_model.108716_t, internal, 2734, 2751
-recovered GeneMark_model.108716_t, internal, 2782, 2799
-recovered GeneMark_model.108716_t, internal, 2822, 2926
-recovered GeneMark_model.108716_t, internal, 2987, 2998
-recovered GeneMark_model.108716_t, internal, 3169, 3215
-recovered GeneMark_model.108716_t, internal, 3298, 3388
-recovered GeneMark_model.108716_t, internal, 3412, 3537
Valid prediction for GeneMark_model.108717_t
Couldn't classify 25, 126
Sorry, prediction GeneMark_model.108719_t fails validation.
(TCT)	 AG	25-126	GT	GCG
(CAT)	 AG	162-173	GT	GAG
(ACG)	 AG	308-406	GT	AAG
(TAT)	 AG	435-494	GT	ATG
(AGG)	 AG	515-529	GT	GAG
(GTA)	 AG	559-586	AC	AAA
-recovered GeneMark_model.108719_t, terminal, 559, 586
-recovered GeneMark_model.108719_t, internal, 25, 126
-recovered GeneMark_model.108719_t, internal, 162, 173
-recovered GeneMark_model.108719_t, internal, 308, 406
-recovered GeneMark_model.108719_t, internal, 435, 494
-recovered GeneMark_model.108719_t, internal, 515, 529

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3698
-exon list size: 47


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support