-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_983

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 188, 267
Couldn't classify 3383, 3643
Sorry, prediction Augustus_model.g41469.t1 fails validation.
(GAC)	 AG	188-267	GT	GGG
(CGA)	 AG	2748-2875	GT	ATG
(TCC)	 AG	3000-3260	GT	AGG
(TGC)	 AG	3383-3643	GT	AGG
-recovered Augustus_model.g41469.t1, internal, 188, 267
-recovered Augustus_model.g41469.t1, internal, 2748, 2875
-recovered Augustus_model.g41469.t1, internal, 3000, 3260
-recovered Augustus_model.g41469.t1, internal, 3383, 3643
Couldn't classify 188, 301
Sorry, prediction snap_scaffold_983-snap.2-T1 fails validation.
(GAC)	 AG	188-301	GT	AGG
(GGG)	 AG	1370-1495	TA	GAT
-recovered snap_scaffold_983-snap.2-T1, terminal, 1370, 1495
-recovered snap_scaffold_983-snap.2-T1, internal, 188, 301
Couldn't classify 3383, 3643
Sorry, prediction GeneMark_model.108715_t fails validation.
(ATG)	 GC	2770-2875	GT	ATG
(TCC)	 AG	3000-3260	GT	AGG
(TGC)	 AG	3383-3643	GT	AGG
-recovered GeneMark_model.108715_t, initial, 2770, 2875
-recovered GeneMark_model.108715_t, internal, 3000, 3260
-recovered GeneMark_model.108715_t, internal, 3383, 3643
Couldn't classify 3403, 3582
Sorry, prediction GlimmerHMM_glimmerT_62384-T1 fails validation.
(ATG)	 AG	1751-1845	GT	GGG
(GCG)	 AG	2742-2812	GT	CGG
(TCC)	 AG	3000-3250	GT	AGG
(GTG)	 AG	3403-3582	GT	CCG
-recovered GlimmerHMM_glimmerT_62384-T1, initial, 1751, 1845
-recovered GlimmerHMM_glimmerT_62384-T1, internal, 1751, 1845
-recovered GlimmerHMM_glimmerT_62384-T1, internal, 2742, 2812
-recovered GlimmerHMM_glimmerT_62384-T1, internal, 3000, 3250
-recovered GlimmerHMM_glimmerT_62384-T1, internal, 3403, 3582
Couldn't classify 3383, 3643
Sorry, prediction snap_scaffold_983-snap.3-T1 fails validation.
(ATG)	 AG	1751-1819	GT	TGG
(TGC)	 AG	2788-2875	GT	ATG
(TCC)	 AG	3000-3260	GT	AGG
(TGC)	 AG	3383-3643	GT	AGG
-recovered snap_scaffold_983-snap.3-T1, initial, 1751, 1819
-recovered snap_scaffold_983-snap.3-T1, internal, 1751, 1819
-recovered snap_scaffold_983-snap.3-T1, internal, 2788, 2875
-recovered snap_scaffold_983-snap.3-T1, internal, 3000, 3260
-recovered snap_scaffold_983-snap.3-T1, internal, 3383, 3643

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3408, 3677
Sorry, prediction snap_scaffold_983-snap.1-T1 fails validation.
(ATG)	 AG	2172-2306	GT	TGG
(CAC)	 AG	3408-3677	GT	GGG
-recovered snap_scaffold_983-snap.1-T1, initial, 2172, 2306
-recovered snap_scaffold_983-snap.1-T1, internal, 2172, 2306
-recovered snap_scaffold_983-snap.1-T1, internal, 3408, 3677

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1531, rend_intergenic: 188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3702
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1531, rend_intergenic: 188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support