-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_982

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1162, 1302
Couldn't classify 3510, 3634
Sorry, prediction snap_scaffold_982-snap.2-T1 fails validation.
(ATC)	 AG	1162-1302	GT	CAG
(GGC)	 AG	3510-3634	GT	GAG
-recovered snap_scaffold_982-snap.2-T1, internal, 1162, 1302
-recovered snap_scaffold_982-snap.2-T1, internal, 3510, 3634
Valid prediction for Augustus_model.g41468.t1
Couldn't classify 3599, 3634
Sorry, prediction GeneMark_model.108714_t fails validation.
(ATG)	 GC	3397-3569	GT	GGG
(GGA)	 AG	3599-3634	GT	GAG
-recovered GeneMark_model.108714_t, initial, 3397, 3569
-recovered GeneMark_model.108714_t, internal, 3599, 3634

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 144, 296
Couldn't classify 3307, 3421
Sorry, prediction snap_scaffold_982-snap.1-T1 fails validation.
(ACG)	 AG	144-296	GT	AGG
(GAA)	 AG	2008-2110	GT	AGG
(GCT)	 AG	2201-2254	GT	CGG
(ACG)	 AG	3307-3421	GT	GGG
-recovered snap_scaffold_982-snap.1-T1, internal, 144, 296
-recovered snap_scaffold_982-snap.1-T1, internal, 2008, 2110
-recovered snap_scaffold_982-snap.1-T1, internal, 2201, 2254
-recovered snap_scaffold_982-snap.1-T1, internal, 3307, 3421
Valid prediction for GeneMark_model.108713_t
Valid prediction for GlimmerHMM_glimmerT_62383-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3559, rend_intergenic: 1162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3702
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3559, rend_intergenic: 1162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support