-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_981

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_981-snap.1-T1
Valid prediction for GeneMark_model.108712_t
Valid prediction for GlimmerHMM_glimmerT_62382-T1
Valid prediction for GeneMark_model.108711_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 234, 355
Sorry, prediction snap_scaffold_981-snap.2-T1 fails validation.
(GCT)	 AG	234-355	GT	GGG
(GGT)	 AG	1155-1320	GT	AGG
(CCA)	 AG	3138-3276	AA	AAA
-recovered snap_scaffold_981-snap.2-T1, terminal, 3138, 3276
-recovered snap_scaffold_981-snap.2-T1, internal, 234, 355
-recovered snap_scaffold_981-snap.2-T1, internal, 1155, 1320
Couldn't classify 3208, 3286
Sorry, prediction GeneMark_model.108710_t fails validation.
(ATG)	 AG	1295-1320	GT	AGG
(AGA)	 AG	1345-1350	GT	AGG
(AGA)	 AG	1375-1380	GT	AGG
(GGG)	 AG	1404-1415	GT	AGG
(GGT)	 AG	1449-1550	GT	AGG
(AGA)	 AG	1567-1572	GT	AGG
(AGA)	 AG	1605-1616	GT	AGG
(AGA)	 AG	1637-1648	GT	AGG
(GAC)	 AG	1969-1985	GT	CAG
(CCA)	 AG	2204-2261	GT	AGG
(GGG)	 AG	2470-2484	GT	GAG
(AGT)	 AG	2510-2536	GT	GGG
(GAA)	 AG	2562-2573	GT	GAG
(GAA)	 AG	2594-2605	GT	GAG
(GGA)	 AG	2630-2636	GT	GAG
(CCC)	 AG	2831-2952	GT	AGG
(ACA)	 AG	3208-3286	GT	AGG
-recovered GeneMark_model.108710_t, initial, 1295, 1320
-recovered GeneMark_model.108710_t, internal, 1295, 1320
-recovered GeneMark_model.108710_t, internal, 1345, 1350
-recovered GeneMark_model.108710_t, internal, 1375, 1380
-recovered GeneMark_model.108710_t, internal, 1404, 1415
-recovered GeneMark_model.108710_t, internal, 1449, 1550
-recovered GeneMark_model.108710_t, internal, 1567, 1572
-recovered GeneMark_model.108710_t, internal, 1605, 1616
-recovered GeneMark_model.108710_t, internal, 1637, 1648
-recovered GeneMark_model.108710_t, internal, 1969, 1985
-recovered GeneMark_model.108710_t, internal, 2204, 2261
-recovered GeneMark_model.108710_t, internal, 2470, 2484
-recovered GeneMark_model.108710_t, internal, 2510, 2536
-recovered GeneMark_model.108710_t, internal, 2562, 2573
-recovered GeneMark_model.108710_t, internal, 2594, 2605
-recovered GeneMark_model.108710_t, internal, 2630, 2636
-recovered GeneMark_model.108710_t, internal, 2831, 2952
-recovered GeneMark_model.108710_t, internal, 3208, 3286

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2745, rend_intergenic: 435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3710
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2745, rend_intergenic: 435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support