-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_98 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 109, 310 Sorry, prediction snap_scaffold_98-snap.2-T1 fails validation. (CTC) AG 109-310 GT AGG (GAG) AG 604-792 GT AGG (ACT) AG 1246-1734 AG GAA -recovered snap_scaffold_98-snap.2-T1, terminal, 1246, 1734 -recovered snap_scaffold_98-snap.2-T1, internal, 109, 310 -recovered snap_scaffold_98-snap.2-T1, internal, 604, 792 Valid prediction for GeneMark_model.106544_t Couldn't classify 109, 310 Sorry, prediction Augustus_model.g40763.t1 fails validation. (CTC) AG 109-310 GT AGG (GAG) AG 604-792 GT AGG (GCC) AG 1158-1379 AC AGA -recovered Augustus_model.g40763.t1, terminal, 1158, 1379 -recovered Augustus_model.g40763.t1, internal, 109, 310 -recovered Augustus_model.g40763.t1, internal, 604, 792 Valid prediction for GeneMark_model.106542_t Valid prediction for GlimmerHMM_glimmerT_61276-T1 Couldn't classify 15777, 15899 Sorry, prediction snap_scaffold_98-snap.4-T1 fails validation. (ATG) CG 12658-12852 GT CAG (TCG) AG 12907-13077 GT CGG (GTG) AG 13107-13236 GT CTG (CTT) AG 14249-14346 GT GGG (GGG) AG 15777-15899 GT GCG -recovered snap_scaffold_98-snap.4-T1, initial, 12658, 12852 -recovered snap_scaffold_98-snap.4-T1, internal, 12907, 13077 -recovered snap_scaffold_98-snap.4-T1, internal, 13107, 13236 -recovered snap_scaffold_98-snap.4-T1, internal, 14249, 14346 -recovered snap_scaffold_98-snap.4-T1, internal, 15777, 15899 Valid prediction for GlimmerHMM_glimmerT_61277-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40764.t1 Valid prediction for Augustus_model.g40765.t1 Couldn't classify 314, 433 Sorry, prediction snap_scaffold_98-snap.5-T1 fails validation. (CGT) AG 314-433 GT CAG (ACC) AG 1873-1992 GT AGG (AGC) AG 2523-2608 GT AGG (GCC) AG 2978-3093 GT CAG (AAT) AG 3108-3358 GT AAG (GGG) AG 3437-3472 CG AAC -recovered snap_scaffold_98-snap.5-T1, terminal, 3437, 3472 -recovered snap_scaffold_98-snap.5-T1, internal, 314, 433 -recovered snap_scaffold_98-snap.5-T1, internal, 1873, 1992 -recovered snap_scaffold_98-snap.5-T1, internal, 2523, 2608 -recovered snap_scaffold_98-snap.5-T1, internal, 2978, 3093 -recovered snap_scaffold_98-snap.5-T1, internal, 3108, 3358 Valid prediction for GlimmerHMM_glimmerT_61278-T1 Couldn't classify 15945, 16174 Sorry, prediction GeneMark_model.106541_t fails validation. (ATG) AG 15078-15172 GT GGG (GAG) AG 15196-15219 GT GGG (GAG) AG 15254-15268 GT GGG (GGG) AG 15290-15301 GT AGG (GAG) AG 15322-15390 GT AGG (ACT) AG 15422-15565 GT AGG (GTG) AG 15596-15728 GT TGG (TAC) AG 15945-16174 GT GGG -recovered GeneMark_model.106541_t, initial, 15078, 15172 -recovered GeneMark_model.106541_t, internal, 15078, 15172 -recovered GeneMark_model.106541_t, internal, 15196, 15219 -recovered GeneMark_model.106541_t, internal, 15254, 15268 -recovered GeneMark_model.106541_t, internal, 15290, 15301 -recovered GeneMark_model.106541_t, internal, 15322, 15390 -recovered GeneMark_model.106541_t, internal, 15422, 15565 -recovered GeneMark_model.106541_t, internal, 15596, 15728 -recovered GeneMark_model.106541_t, internal, 15945, 16174 Couldn't classify 15971, 16174 Sorry, prediction snap_scaffold_98-snap.1-T1 fails validation. (ATG) AC 13892-13945 GT AGG (GGA) AG 14789-15172 GT GGG (CAC) AG 15453-15565 GT AGG (TTT) AG 15971-16174 GT GGG -recovered snap_scaffold_98-snap.1-T1, initial, 13892, 13945 -recovered snap_scaffold_98-snap.1-T1, internal, 14789, 15172 -recovered snap_scaffold_98-snap.1-T1, internal, 15453, 15565 -recovered snap_scaffold_98-snap.1-T1, internal, 15971, 16174 Valid prediction for snap_scaffold_98-snap.3-T1 Valid prediction for GeneMark_model.106543_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 13027, rend_intergenic: 13024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 2329, rend_intergenic: 109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15899, rend_intergenic: 12749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 16220 -exon list size: 91 building trellis 1.1 2.2 3.2 4.3 5.4 6.5 7.5 8.6 9.7 10.8 11.8 12.9 14.0 15.1 16.1 17.2 18.3 19.4 20.4 21.5 22.6 23.7 24.7 25.8 26.9 28.0 29.0 30.1 31.2 32.3 33.3 34.4 35.5 36.6 37.6 38.7 39.8 40.9 41.9 43.0 44.1 45.2 46.2 47.3 48.4 49.5 50.5 51.6 52.7 53.8 54.8 55.9 57.0 58.1 59.1 60.2 61.3 62.4 63.4 64.5 65.6 66.7 67.7 68.8 69.9 71.0 72.0 73.1 74.2 75.3 76.3 77.4 78.5 79.6 80.6 81.7 82.8 83.9 84.9 86.0 87.1 88.2 89.2 90.3 91.4 92.5 93.5 94.6 95.7 96.8 97.8 98.9 -found 4 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 13027, rend_intergenic: 13024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 2329, rend_intergenic: 109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15899, rend_intergenic: 12749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 3 predictions persist after filtering for low support