-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_979

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 68, 152
Sorry, prediction GeneMark_model.108706_t fails validation.
(AGA)	 AG	68-152	GT	GGG
(GTG)	 AG	266-312	GT	AGG
(AGA)	 AG	405-413	GC	TGG
(GCA)	 AG	437-560	GC	CGG
(CCG)	 AG	778-875	GT	ATG
(AGG)	 AG	900-911	GT	CAG
(AGA)	 AG	936-983	GT	GAG
(AGA)	 AG	1007-1012	GT	GAG
(GGA)	 AG	1079-1132	GT	GAG
(AGA)	 AG	1176-1406	GT	GTG
(AAG)	 AG	1432-1482	GT	AGG
(GGG)	 AG	1624-1641	GC	TGG
(GTC)	 AG	1698-1862	GT	TGG
(CCT)	 AG	2308-2325	GT	GGG
(AAA)	 AG	2354-2365	GT	ATG
(GAC)	 AG	2390-2449	GT	GGG
(TGG)	 AG	2552-2588	GC	AGG
-recovered GeneMark_model.108706_t, terminal, 2552, 2588
-recovered GeneMark_model.108706_t, internal, 68, 152
-recovered GeneMark_model.108706_t, internal, 266, 312
-recovered GeneMark_model.108706_t, internal, 405, 413
-recovered GeneMark_model.108706_t, internal, 437, 560
-recovered GeneMark_model.108706_t, internal, 778, 875
-recovered GeneMark_model.108706_t, internal, 900, 911
-recovered GeneMark_model.108706_t, internal, 936, 983
-recovered GeneMark_model.108706_t, internal, 1007, 1012
-recovered GeneMark_model.108706_t, internal, 1079, 1132
-recovered GeneMark_model.108706_t, internal, 1176, 1406
-recovered GeneMark_model.108706_t, internal, 1432, 1482
-recovered GeneMark_model.108706_t, internal, 1624, 1641
-recovered GeneMark_model.108706_t, internal, 1698, 1862
-recovered GeneMark_model.108706_t, internal, 2308, 2325
-recovered GeneMark_model.108706_t, internal, 2354, 2365
-recovered GeneMark_model.108706_t, internal, 2390, 2449
-recovered GeneMark_model.108706_t, internal, 2552, 2588
Valid prediction for snap_scaffold_979-snap.1-T1
Couldn't classify 3325, 3402
Sorry, prediction GlimmerHMM_glimmerT_62380-T1 fails validation.
(ATG)	 AG	106-152	GT	GGG
(GAC)	 AG	3325-3402	GT	GGG
-recovered GlimmerHMM_glimmerT_62380-T1, initial, 106, 152
-recovered GlimmerHMM_glimmerT_62380-T1, internal, 106, 152
-recovered GlimmerHMM_glimmerT_62380-T1, internal, 3325, 3402

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3717
-exon list size: 49


building trellis

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3.9    
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15.7    
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19.6    
21.6    
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25.5    
27.5    
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33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support