-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_976

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62378-T1
Valid prediction for GeneMark_model.108703_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2252, 2326
Couldn't classify 3501, 3583
Sorry, prediction snap_scaffold_976-snap.1-T1 fails validation.
(ATA)	 AG	2252-2326	GT	TGG
(TTC)	 AG	2923-3104	GT	GAG
(AGC)	 AG	3211-3242	GT	AGG
(GAG)	 AG	3501-3583	GT	ACG
-recovered snap_scaffold_976-snap.1-T1, internal, 2252, 2326
-recovered snap_scaffold_976-snap.1-T1, internal, 2923, 3104
-recovered snap_scaffold_976-snap.1-T1, internal, 3211, 3242
-recovered snap_scaffold_976-snap.1-T1, internal, 3501, 3583
Couldn't classify 3211, 3293
Sorry, prediction GeneMark_model.108702_t fails validation.
(ATG)	 GC	2888-2892	GT	GTG
(GGA)	 AG	2984-3004	GT	GAG
(AGA)	 AG	3028-3072	GT	GAG
(AAG)	 AG	3096-3104	GT	GAG
(ACT)	 AG	3128-3154	GT	TCG
(AGC)	 AG	3211-3293	GT	AGG
-recovered GeneMark_model.108702_t, initial, 2888, 2892
-recovered GeneMark_model.108702_t, internal, 2984, 3004
-recovered GeneMark_model.108702_t, internal, 3028, 3072
-recovered GeneMark_model.108702_t, internal, 3096, 3104
-recovered GeneMark_model.108702_t, internal, 3128, 3154
-recovered GeneMark_model.108702_t, internal, 3211, 3293

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3740
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support