-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_972

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_972-snap.2-T1
add_exon() Sorry, snap_scaffold_972-snap.2-T1 1534-1654-initial-1 is invalid.
Couldn't classify 3466, 3567
Sorry, prediction GeneMark_model.108697_t fails validation.
(ATG)	 AG	2726-2739	GT	ATG
(AGG)	 AG	2806-2895	GT	AAG
(GAG)	 AG	2924-3082	GT	ATG
(GGC)	 AG	3116-3139	GT	AAG
(GAA)	 AG	3165-3182	GT	GAG
(AAT)	 AG	3200-3250	GT	GAG
(ACA)	 AG	3273-3293	GT	GAG
(AGA)	 AG	3318-3326	GT	GAG
(AGA)	 AG	3351-3429	GT	AGG
(ACT)	 AG	3466-3567	GT	ATG
-recovered GeneMark_model.108697_t, initial, 2726, 2739
-recovered GeneMark_model.108697_t, internal, 2726, 2739
-recovered GeneMark_model.108697_t, internal, 2806, 2895
-recovered GeneMark_model.108697_t, internal, 2924, 3082
-recovered GeneMark_model.108697_t, internal, 3116, 3139
-recovered GeneMark_model.108697_t, internal, 3165, 3182
-recovered GeneMark_model.108697_t, internal, 3200, 3250
-recovered GeneMark_model.108697_t, internal, 3273, 3293
-recovered GeneMark_model.108697_t, internal, 3318, 3326
-recovered GeneMark_model.108697_t, internal, 3351, 3429
-recovered GeneMark_model.108697_t, internal, 3466, 3567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108695_t
Valid prediction for GlimmerHMM_glimmerT_62375-T1
Valid prediction for GeneMark_model.108696_t
Couldn't classify 1287, 1408
Couldn't classify 3135, 3288
Sorry, prediction snap_scaffold_972-snap.1-T1 fails validation.
(GAA)	 AG	1287-1408	GT	AGG
(GAA)	 AG	1839-2074	GT	AGG
(GAC)	 AG	2181-2428	GT	AGG
(AGA)	 AG	3135-3288	GT	AAG
-recovered snap_scaffold_972-snap.1-T1, internal, 1287, 1408
-recovered snap_scaffold_972-snap.1-T1, internal, 1839, 2074
-recovered snap_scaffold_972-snap.1-T1, internal, 2181, 2428
-recovered snap_scaffold_972-snap.1-T1, internal, 3135, 3288

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2474, rend_intergenic: 1534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3760
-exon list size: 48


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2474, rend_intergenic: 1534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support