-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_970

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 52
Sorry, prediction GeneMark_model.108691_t fails validation.
(GGG)	 AG	12-52	GT	GGG
(CAT)	 AG	2544-2594	GT	CTG
(AGA)	 AG	2777-2785	GT	GGG
(GGT)	 AG	2813-2863	GT	AGG
(CAC)	 AG	2894-2903	GT	AGG
(GAC)	 AG	3403-3417	GG	GAG
-recovered GeneMark_model.108691_t, terminal, 3403, 3417
-recovered GeneMark_model.108691_t, internal, 12, 52
-recovered GeneMark_model.108691_t, internal, 2544, 2594
-recovered GeneMark_model.108691_t, internal, 2777, 2785
-recovered GeneMark_model.108691_t, internal, 2813, 2863
-recovered GeneMark_model.108691_t, internal, 2894, 2903

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 24, 77
Sorry, prediction GeneMark_model.108692_t fails validation.
(AGG)	 AG	24-77	GT	GAG
(GAG)	 AG	101-121	GT	GAG
(GAG)	 AG	168-188	GT	GAG
(GAG)	 AG	212-238	GT	GAG
(GAA)	 AG	277-286	AT	GAA
-recovered GeneMark_model.108692_t, terminal, 277, 286
-recovered GeneMark_model.108692_t, internal, 24, 77
-recovered GeneMark_model.108692_t, internal, 101, 121
-recovered GeneMark_model.108692_t, internal, 168, 188
-recovered GeneMark_model.108692_t, internal, 212, 238

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3767
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support