-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_97

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_97-snap.1-T1
add_exon() Sorry, snap_scaffold_97-snap.1-T1 5209-5416-terminal-1 is invalid.
Valid prediction for snap_scaffold_97-snap.3-T1
Valid prediction for GeneMark_model.106540_t
Valid prediction for GeneMark_model.106537_t
Valid prediction for snap_scaffold_97-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61275-T1
Valid prediction for GeneMark_model.106539_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 15413, 15724
Sorry, prediction GeneMark_model.106536_t fails validation.
(ATG)	 GG	15352-15389	GT	GGG
(GAG)	 AG	15413-15724	GT	GAG
-recovered GeneMark_model.106536_t, initial, 15352, 15389
-recovered GeneMark_model.106536_t, internal, 15413, 15724
Valid prediction for GeneMark_model.106538_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 16286
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support