-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_969

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3682, 3736
Sorry, prediction GeneMark_model.108690_t fails validation.
(ATG)	 GC	2394-2411	GT	GTG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3518	GT	AAG
(AGT)	 AG	3682-3736	GT	AGG
-recovered GeneMark_model.108690_t, initial, 2394, 2411
-recovered GeneMark_model.108690_t, internal, 2596, 2784
-recovered GeneMark_model.108690_t, internal, 2993, 3125
-recovered GeneMark_model.108690_t, internal, 3431, 3518
-recovered GeneMark_model.108690_t, internal, 3682, 3736
Valid prediction for GeneMark_model.108689_t
Couldn't classify 3431, 3518
Sorry, prediction GlimmerHMM_glimmerT_62374-T1 fails validation.
(ATG)	 GG	576-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3518	GT	AAG
-recovered GlimmerHMM_glimmerT_62374-T1, initial, 576, 655
-recovered GlimmerHMM_glimmerT_62374-T1, internal, 852, 1023
-recovered GlimmerHMM_glimmerT_62374-T1, internal, 2393, 2467
-recovered GlimmerHMM_glimmerT_62374-T1, internal, 2596, 2784
-recovered GlimmerHMM_glimmerT_62374-T1, internal, 2993, 3125
-recovered GlimmerHMM_glimmerT_62374-T1, internal, 3431, 3518
Couldn't classify 3679, 3736
Sorry, prediction Augustus_model.g41465.t1 fails validation.
(ATG)	 GG	576-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered Augustus_model.g41465.t1, initial, 576, 655
-recovered Augustus_model.g41465.t1, internal, 852, 1023
-recovered Augustus_model.g41465.t1, internal, 2142, 2192
-recovered Augustus_model.g41465.t1, internal, 2393, 2467
-recovered Augustus_model.g41465.t1, internal, 2596, 2784
-recovered Augustus_model.g41465.t1, internal, 2993, 3125
-recovered Augustus_model.g41465.t1, internal, 3431, 3536
-recovered Augustus_model.g41465.t1, internal, 3679, 3736
Couldn't classify 561, 655
Couldn't classify 3679, 3736
Sorry, prediction snap_scaffold_969-snap.1-T1 fails validation.
(CGC)	 AG	561-655	GT	AGG
(ATT)	 AG	852-1023	GT	AGG
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered snap_scaffold_969-snap.1-T1, internal, 561, 655
-recovered snap_scaffold_969-snap.1-T1, internal, 852, 1023
-recovered snap_scaffold_969-snap.1-T1, internal, 2142, 2192
-recovered snap_scaffold_969-snap.1-T1, internal, 2393, 2467
-recovered snap_scaffold_969-snap.1-T1, internal, 2596, 2784
-recovered snap_scaffold_969-snap.1-T1, internal, 2993, 3125
-recovered snap_scaffold_969-snap.1-T1, internal, 3431, 3536
-recovered snap_scaffold_969-snap.1-T1, internal, 3679, 3736
Couldn't classify 2142, 2192
Couldn't classify 3679, 3736
Sorry, prediction pasa_asmbl_55818.p1 fails validation.
(GAG)	 AG	2142-2192	GT	TGG
(CAT)	 AG	2393-2467	GT	AGG
(ATC)	 AG	2596-2784	GT	AGG
(AGT)	 AG	2993-3125	GT	GAG
(AGC)	 AG	3431-3536	GT	GGG
(GAG)	 AG	3679-3736	GT	AGG
-recovered pasa_asmbl_55818.p1, internal, 2142, 2192
-recovered pasa_asmbl_55818.p1, internal, 2393, 2467
-recovered pasa_asmbl_55818.p1, internal, 2596, 2784
-recovered pasa_asmbl_55818.p1, internal, 2993, 3125
-recovered pasa_asmbl_55818.p1, internal, 3431, 3536
-recovered pasa_asmbl_55818.p1, internal, 3679, 3736

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3770
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support