-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_967

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 335, 440
Couldn't classify 3246, 3386
Sorry, prediction snap_scaffold_967-snap.1-T1 fails validation.
(CAT)	 AG	335-440	GT	GAG
(GAT)	 AG	3246-3386	GT	GGG
-recovered snap_scaffold_967-snap.1-T1, internal, 335, 440
-recovered snap_scaffold_967-snap.1-T1, internal, 3246, 3386
Couldn't classify 40, 105
Couldn't classify 3386, 3397
Sorry, prediction GeneMark_model.108686_t fails validation.
(GAG)	 AG	40-105	GT	GAG
(GGG)	 AG	2152-2196	GT	AGG
(AGA)	 AG	2236-2271	GT	AGG
(AAA)	 AG	2317-2322	GT	ACG
(GGT)	 AG	3386-3397	GT	AGG
-recovered GeneMark_model.108686_t, internal, 40, 105
-recovered GeneMark_model.108686_t, internal, 2152, 2196
-recovered GeneMark_model.108686_t, internal, 2236, 2271
-recovered GeneMark_model.108686_t, internal, 2317, 2322
-recovered GeneMark_model.108686_t, internal, 3386, 3397

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3772
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support