-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_966

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108683_t
Couldn't classify 3568, 3771
Sorry, prediction snap_scaffold_966-snap.2-T1 fails validation.
(ATG)	 CT	1637-1642	GT	CGG
(TTG)	 AG	3568-3771	GT	AGG
-recovered snap_scaffold_966-snap.2-T1, initial, 1637, 1642
-recovered snap_scaffold_966-snap.2-T1, internal, 3568, 3771
Couldn't classify 3609, 3705
Sorry, prediction GeneMark_model.108685_t fails validation.
(ATG)	 AC	2405-2430	GT	AGG
(GGA)	 AG	3609-3705	GT	CGG
-recovered GeneMark_model.108685_t, initial, 2405, 2430
-recovered GeneMark_model.108685_t, internal, 3609, 3705

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108684_t
Couldn't classify 48, 84
Couldn't classify 3259, 3464
Sorry, prediction snap_scaffold_966-snap.1-T1 fails validation.
(GAC)	 AG	48-84	GT	GGG
(GGA)	 AG	177-196	GT	GGG
(GGG)	 AG	3259-3464	GT	AGG
-recovered snap_scaffold_966-snap.1-T1, internal, 48, 84
-recovered snap_scaffold_966-snap.1-T1, internal, 177, 196
-recovered snap_scaffold_966-snap.1-T1, internal, 3259, 3464
Couldn't classify 3736, 3765
Sorry, prediction GeneMark_model.108682_t fails validation.
(ATG)	 CT	3246-3283	GT	AGG
(GGA)	 AG	3307-3390	GT	GAG
(GAG)	 AG	3414-3422	GT	AAG
(GAT)	 AG	3448-3522	GT	AGG
(CAG)	 AG	3550-3585	GT	CAG
(GAG)	 AG	3611-3619	GT	GTG
(GTG)	 AG	3652-3660	GT	GAG
(GGA)	 AG	3685-3714	GT	CAG
(GGA)	 AG	3736-3765	GC	GAG
-recovered GeneMark_model.108682_t, initial, 3246, 3283
-recovered GeneMark_model.108682_t, terminal, 3307, 3390
-recovered GeneMark_model.108682_t, internal, 3307, 3390
-recovered GeneMark_model.108682_t, internal, 3414, 3422
-recovered GeneMark_model.108682_t, internal, 3448, 3522
-recovered GeneMark_model.108682_t, internal, 3550, 3585
-recovered GeneMark_model.108682_t, internal, 3611, 3619
-recovered GeneMark_model.108682_t, internal, 3652, 3660
-recovered GeneMark_model.108682_t, internal, 3685, 3714
-recovered GeneMark_model.108682_t, internal, 3736, 3765

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3730, rend_intergenic: 1637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3777
-exon list size: 39


building trellis

2.4    
4.9    
7.3    
9.8    
12.2    
14.6    
17.1    
19.5    
22.0    
24.4    
26.8    
29.3    
31.7    
34.1    
36.6    
39.0    
41.5    
43.9    
46.3    
48.8    
51.2    
53.7    
56.1    
58.5    
61.0    
63.4    
65.9    
68.3    
70.7    
73.2    
75.6    
78.0    
80.5    
82.9    
85.4    
87.8    
90.2    
92.7    
95.1    
97.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3730, rend_intergenic: 1637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support