-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_965

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 616, 872
Sorry, prediction GeneMark_model.108681_t fails validation.
(TGG)	 AG	616-872	GT	ATG
(CAT)	 AG	935-1059	GT	GCG
(ACT)	 AG	1118-1273	GT	ATG
(ATT)	 AG	1708-1990	GT	GGG
(GCT)	 AG	2013-2321	GT	GGG
(CAT)	 AG	2395-2523	GT	AGG
(CTT)	 AG	3095-3148	CC	AGC
-recovered GeneMark_model.108681_t, terminal, 3095, 3148
-recovered GeneMark_model.108681_t, internal, 616, 872
-recovered GeneMark_model.108681_t, internal, 935, 1059
-recovered GeneMark_model.108681_t, internal, 1118, 1273
-recovered GeneMark_model.108681_t, internal, 1708, 1990
-recovered GeneMark_model.108681_t, internal, 2013, 2321
-recovered GeneMark_model.108681_t, internal, 2395, 2523
Valid prediction for GlimmerHMM_glimmerT_62371-T1
Couldn't classify 616, 711
Sorry, prediction GlimmerHMM_glimmerT_62372-T1 fails validation.
(TGG)	 AG	616-711	GT	GGG
(GCA)	 AG	1047-1307	TT	GAT
-recovered GlimmerHMM_glimmerT_62372-T1, terminal, 1047, 1307
-recovered GlimmerHMM_glimmerT_62372-T1, internal, 616, 711
Valid prediction for snap_scaffold_965-snap.1-T1
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 410, 506
Sorry, prediction Augustus_model.g41464.t1 fails validation.
(AAT)	 AG	410-506	GT	TGG
(TGG)	 AG	616-711	GT	GGG
(GCA)	 AG	1047-1273	GT	ATG
(ATT)	 AG	1708-1935	GT	AGG
(GGG)	 AG	2075-2381	CA	GAC
-recovered Augustus_model.g41464.t1, terminal, 2075, 2381
-recovered Augustus_model.g41464.t1, internal, 410, 506
-recovered Augustus_model.g41464.t1, internal, 616, 711
-recovered Augustus_model.g41464.t1, internal, 1047, 1273
-recovered Augustus_model.g41464.t1, internal, 1708, 1935

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3778
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support