-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_964

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_964-snap.1-T1
Valid prediction for GeneMark_model.108678_t
Couldn't classify 2599, 2662
Sorry, prediction GlimmerHMM_glimmerT_62370-T1 fails validation.
(ATG)	 AC	235-348	GT	CTG
(GTG)	 AG	2599-2662	GT	AGG
-recovered GlimmerHMM_glimmerT_62370-T1, initial, 235, 348
-recovered GlimmerHMM_glimmerT_62370-T1, internal, 2599, 2662
Couldn't classify 3437, 3463
Sorry, prediction GeneMark_model.108680_t fails validation.
(ATG)	 AA	2710-2714	GT	GAG
(GGA)	 AG	2815-2898	GT	GGG
(GAA)	 AG	2922-2984	GT	GAG
(GCG)	 AG	3009-3113	GT	GTG
(GGT)	 AG	3135-3143	GT	AGG
(GGT)	 AG	3182-3190	GT	AGG
(GGT)	 AG	3229-3237	GT	AGG
(GGT)	 AG	3395-3403	GT	GAG
(GGA)	 AG	3437-3463	GT	AGG
-recovered GeneMark_model.108680_t, initial, 2710, 2714
-recovered GeneMark_model.108680_t, internal, 2815, 2898
-recovered GeneMark_model.108680_t, internal, 2922, 2984
-recovered GeneMark_model.108680_t, internal, 3009, 3113
-recovered GeneMark_model.108680_t, internal, 3135, 3143
-recovered GeneMark_model.108680_t, internal, 3182, 3190
-recovered GeneMark_model.108680_t, internal, 3229, 3237
-recovered GeneMark_model.108680_t, internal, 3395, 3403
-recovered GeneMark_model.108680_t, internal, 3437, 3463
Valid prediction for snap_scaffold_964-snap.3-T1
Valid prediction for Augustus_model.g41463.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108677_t
Valid prediction for snap_scaffold_964-snap.2-T1
add_exon() Sorry, snap_scaffold_964-snap.2-T1 3051-3288-terminal-1 is invalid.
Valid prediction for GeneMark_model.108679_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1284, rend_intergenic: 495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3782
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1284, rend_intergenic: 495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support