-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_962

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 409, 423
Sorry, prediction GeneMark_model.108673_t fails validation.
(GTT)	 AG	409-423	GT	GTG
(GAG)	 AG	757-780	GT	GAG
(GGT)	 AG	1623-1643	GT	GGG
(GGG)	 AG	1668-1703	GT	GGG
(AGG)	 AG	1735-1743	GT	GGG
(AGG)	 AG	1775-1783	GT	GGG
(GGA)	 AG	1817-1843	GT	GGG
(ACA)	 AG	1871-1885	GT	GGG
(ACA)	 AG	2129-2209	GT	AGG
(ACA)	 AG	2255-2699	GA	AGG
-recovered GeneMark_model.108673_t, terminal, 2255, 2699
-recovered GeneMark_model.108673_t, internal, 409, 423
-recovered GeneMark_model.108673_t, internal, 757, 780
-recovered GeneMark_model.108673_t, internal, 1623, 1643
-recovered GeneMark_model.108673_t, internal, 1668, 1703
-recovered GeneMark_model.108673_t, internal, 1735, 1743
-recovered GeneMark_model.108673_t, internal, 1775, 1783
-recovered GeneMark_model.108673_t, internal, 1817, 1843
-recovered GeneMark_model.108673_t, internal, 1871, 1885
-recovered GeneMark_model.108673_t, internal, 2129, 2209

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3788
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support