-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_961

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 49, 155
Couldn't classify 3729, 3778
Sorry, prediction GeneMark_model.108672_t fails validation.
(CCT)	 AG	49-155	GT	ATG
(AAA)	 AG	2478-2483	GT	AAG
(AGG)	 AG	2562-2606	GC	AGG
(AAG)	 AG	2630-2653	GT	GTG
(ATG)	 AG	3577-3692	GT	GGG
(GAC)	 AG	3729-3778	GC	TCG
add_exon() Sorry, GeneMark_model.108672_t 3577-3692-initial-1 is invalid.
-recovered GeneMark_model.108672_t, initial, 3577, 3692
-recovered GeneMark_model.108672_t, internal, 49, 155
-recovered GeneMark_model.108672_t, internal, 2478, 2483
-recovered GeneMark_model.108672_t, internal, 2562, 2606
-recovered GeneMark_model.108672_t, internal, 2630, 2653
-recovered GeneMark_model.108672_t, internal, 3577, 3692
-recovered GeneMark_model.108672_t, internal, 3729, 3778

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3792
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support