-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_960

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108670_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 343, 420
Sorry, prediction snap_scaffold_960-snap.2-T1 fails validation.
(CCG)	 AG	343-420	GT	AGG
(AAG)	 AG	1331-1525	GT	GAG
(AGA)	 AG	1675-1922	AG	GAA
-recovered snap_scaffold_960-snap.2-T1, terminal, 1675, 1922
-recovered snap_scaffold_960-snap.2-T1, internal, 343, 420
-recovered snap_scaffold_960-snap.2-T1, internal, 1331, 1525
Valid prediction for GlimmerHMM_glimmerT_62367-T1
Valid prediction for snap_scaffold_960-snap.1-T1
Valid prediction for GeneMark_model.108671_t
Valid prediction for GeneMark_model.108669_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3792
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support