-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_959

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2701, 3168
Sorry, prediction snap_scaffold_959-snap.2-T1 fails validation.
(ATG)	 CC	923-965	GT	GAG
(AGA)	 AG	2701-3168	GT	AGG
-recovered snap_scaffold_959-snap.2-T1, initial, 923, 965
-recovered snap_scaffold_959-snap.2-T1, internal, 2701, 3168
Couldn't classify 99, 212
Sorry, prediction Augustus_model.g41460.t1 fails validation.
(ACA)	 AG	99-212	GT	CGG
(GTC)	 AG	454-629	GG	GAG
-recovered Augustus_model.g41460.t1, terminal, 454, 629
-recovered Augustus_model.g41460.t1, internal, 99, 212
Couldn't classify 99, 220
Sorry, prediction GeneMark_model.108667_t fails validation.
(ACA)	 AG	99-220	GT	AAG
(GCG)	 AG	489-616	GT	CTG
(ACG)	 AG	856-906	GT	GGG
(GAG)	 AG	1056-1100	GT	GAG
(AGA)	 AG	1861-2010	GT	AGG
(AGA)	 AG	2049-2117	GT	GAG
(ACC)	 AG	2159-2179	GT	CAG
(AAA)	 AG	2721-3141	AG	AAA
-recovered GeneMark_model.108667_t, terminal, 2721, 3141
-recovered GeneMark_model.108667_t, internal, 99, 220
-recovered GeneMark_model.108667_t, internal, 489, 616
-recovered GeneMark_model.108667_t, internal, 856, 906
-recovered GeneMark_model.108667_t, internal, 1056, 1100
-recovered GeneMark_model.108667_t, internal, 1861, 2010
-recovered GeneMark_model.108667_t, internal, 2049, 2117
-recovered GeneMark_model.108667_t, internal, 2159, 2179

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 189, 209
Sorry, prediction GeneMark_model.108668_t fails validation.
(AGG)	 AG	189-209	GT	GAG
(GAA)	 AG	236-331	GT	GGG
(AGA)	 AG	395-419	AA	AAA
-recovered GeneMark_model.108668_t, terminal, 395, 419
-recovered GeneMark_model.108668_t, internal, 189, 209
-recovered GeneMark_model.108668_t, internal, 236, 331
Couldn't classify 2930, 3046
Sorry, prediction GlimmerHMM_glimmerT_62366-T1 fails validation.
(AGC)	 AG	2930-3046	GT	ACG
(GGG)	 AG	3248-3275	TC	GAT
-recovered GlimmerHMM_glimmerT_62366-T1, terminal, 3248, 3275
-recovered GlimmerHMM_glimmerT_62366-T1, internal, 2930, 3046
Couldn't classify 1419, 1559
Sorry, prediction snap_scaffold_959-snap.1-T1 fails validation.
(ACG)	 AG	1419-1559	GT	AGG
(AAG)	 AG	1956-2061	GT	ATG
(AGC)	 AG	2930-3046	GT	ACG
(GGC)	 AG	3182-3275	TC	GAT
-recovered snap_scaffold_959-snap.1-T1, terminal, 3182, 3275
-recovered snap_scaffold_959-snap.1-T1, internal, 1419, 1559
-recovered snap_scaffold_959-snap.1-T1, internal, 1956, 2061
-recovered snap_scaffold_959-snap.1-T1, internal, 2930, 3046

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2377, rend_intergenic: 923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3795
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2377, rend_intergenic: 923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support