-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_958

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62365-T1
Couldn't classify 323, 473
Sorry, prediction GeneMark_model.108665_t fails validation.
(GAG)	 AG	323-473	GT	ATG
(GGG)	 AG	678-850	TG	AAT
-recovered GeneMark_model.108665_t, terminal, 678, 850
-recovered GeneMark_model.108665_t, internal, 323, 473
Couldn't classify 323, 524
Sorry, prediction snap_scaffold_958-snap.1-T1 fails validation.
(GAG)	 AG	323-524	GT	GCG
(GGG)	 AG	678-850	TG	AAT
-recovered snap_scaffold_958-snap.1-T1, terminal, 678, 850
-recovered snap_scaffold_958-snap.1-T1, internal, 323, 524
Couldn't classify 323, 473
Sorry, prediction Augustus_model.g41458.t1 fails validation.
(GAG)	 AG	323-473	GT	ATG
(GGG)	 AG	678-850	TG	AAT
-recovered Augustus_model.g41458.t1, terminal, 678, 850
-recovered Augustus_model.g41458.t1, internal, 323, 473

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41459.t1
add_exon() Sorry, Augustus_model.g41459.t1 1303-1394-terminal-1 is invalid.
Couldn't classify 40, 119
Sorry, prediction GeneMark_model.108666_t fails validation.
(TCA)	 AG	40-119	GT	TGG
(AAA)	 AG	1303-1394	AA	GAA
-recovered GeneMark_model.108666_t, terminal, 1303, 1394
-recovered GeneMark_model.108666_t, internal, 40, 119

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3807
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 2 predictions from path traversal
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support