-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_957

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 966, 1472
Sorry, prediction pasa_asmbl_55813.p1 fails validation.
(GGT)	 GT	966-1472	GT	AGG
Valid prediction for Augustus_model.g41457.t1
Couldn't classify 852, 1472
Sorry, prediction GeneMark_model.108662_t fails validation.
(AGC)	 AG	852-1472	GT	AGG
(CAG)	 AG	2628-2744	TA	GAT
-recovered GeneMark_model.108662_t, terminal, 2628, 2744
-recovered GeneMark_model.108662_t, internal, 852, 1472
Couldn't classify 3727, 3738
Sorry, prediction GeneMark_model.108664_t fails validation.
(ATG)	 GC	3490-3663	GT	AGG
(AGG)	 AG	3727-3738	GT	AGG
-recovered GeneMark_model.108664_t, initial, 3490, 3663
-recovered GeneMark_model.108664_t, internal, 3727, 3738
Valid prediction for snap_scaffold_957-snap.1-T1
Couldn't classify 3211, 3663
Sorry, prediction GlimmerHMM_glimmerT_62364-T1 fails validation.
(ATG)	 GC	876-1472	GT	AGG
(GCT)	 AG	2171-2217	GT	GGG
(GAA)	 AG	2608-2707	GT	CAG
(GTG)	 AG	3211-3663	GT	AGG
-recovered GlimmerHMM_glimmerT_62364-T1, initial, 876, 1472
-recovered GlimmerHMM_glimmerT_62364-T1, internal, 2171, 2217
-recovered GlimmerHMM_glimmerT_62364-T1, internal, 2608, 2707
-recovered GlimmerHMM_glimmerT_62364-T1, internal, 3211, 3663
Couldn't classify 3211, 3663
Sorry, prediction snap_scaffold_957-snap.2-T1 fails validation.
(ATG)	 CC	2136-2217	GT	GGG
(GAA)	 AG	2608-2726	GT	GCG
(GTG)	 AG	3211-3663	GT	AGG
-recovered snap_scaffold_957-snap.2-T1, initial, 2136, 2217
-recovered snap_scaffold_957-snap.2-T1, internal, 2608, 2726
-recovered snap_scaffold_957-snap.2-T1, internal, 3211, 3663

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108663_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3811
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support