-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_956 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_956-snap.1-T1 Couldn't classify 10, 101 Sorry, prediction GeneMark_model.108661_t fails validation. (AGA) AG 10-101 GC GGG (GAA) AG 126-191 GT AGG (GGG) AG 1056-1085 GT GGG (GGA) AG 1108-1236 GT TGG (GAA) AG 2119-2151 GT AAG (GAA) AG 2389-2433 GT AAG (AGG) AG 2608-2677 GA GAG -recovered GeneMark_model.108661_t, terminal, 2608, 2677 -recovered GeneMark_model.108661_t, internal, 10, 101 -recovered GeneMark_model.108661_t, internal, 126, 191 -recovered GeneMark_model.108661_t, internal, 1056, 1085 -recovered GeneMark_model.108661_t, internal, 1108, 1236 -recovered GeneMark_model.108661_t, internal, 2119, 2151 -recovered GeneMark_model.108661_t, internal, 2389, 2433 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 1022, 1081 Sorry, prediction GlimmerHMM_glimmerT_62363-T1 fails validation. (GCC) AG 1022-1081 GT AGG (GGA) AG 2521-2610 CC GAC -recovered GlimmerHMM_glimmerT_62363-T1, terminal, 2521, 2610 -recovered GlimmerHMM_glimmerT_62363-T1, internal, 1022, 1081 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 3815 -exon list size: 21 building trellis 4.3 8.7 13.0 17.4 21.7 26.1 30.4 34.8 39.1 43.5 47.8 52.2 56.5 60.9 65.2 69.6 73.9 78.3 82.6 87.0 91.3 95.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support