-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_954

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2983, 3104
Sorry, prediction GeneMark_model.108658_t fails validation.
(ATG)	 CT	797-810	GT	CAG
(GAA)	 AG	841-1058	GT	CAG
(GCC)	 AG	1491-1575	GT	AAG
(GCA)	 AG	1609-1695	GT	CCG
(GCT)	 AG	1880-1960	GT	AGG
(AAC)	 AG	1988-2170	GT	AGG
(AGA)	 AG	2396-2476	GT	AAG
(ACA)	 AG	2917-2955	GT	CGG
(ACA)	 AG	2983-3104	GT	TGG
-recovered GeneMark_model.108658_t, initial, 797, 810
-recovered GeneMark_model.108658_t, internal, 841, 1058
-recovered GeneMark_model.108658_t, internal, 1491, 1575
-recovered GeneMark_model.108658_t, internal, 1609, 1695
-recovered GeneMark_model.108658_t, internal, 1880, 1960
-recovered GeneMark_model.108658_t, internal, 1988, 2170
-recovered GeneMark_model.108658_t, internal, 2396, 2476
-recovered GeneMark_model.108658_t, internal, 2917, 2955
-recovered GeneMark_model.108658_t, internal, 2983, 3104
Valid prediction for GlimmerHMM_glimmerT_62361-T1
Valid prediction for Augustus_model.g41456.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62362-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62362-T1 672-1044-terminal-1 is invalid.
Couldn't classify 3279, 3421
Sorry, prediction GeneMark_model.108657_t fails validation.
(ATG)	 AG	3186-3245	GT	AGG
(CCC)	 AG	3279-3421	GT	TGG
-recovered GeneMark_model.108657_t, initial, 3186, 3245
-recovered GeneMark_model.108657_t, internal, 3186, 3245
-recovered GeneMark_model.108657_t, internal, 3279, 3421
Valid prediction for snap_scaffold_954-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3823
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support