-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_953

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 55, 271
Couldn't classify 1689, 1833
Sorry, prediction snap_scaffold_953-snap.1-T1 fails validation.
(GAT)	 AG	55-271	GT	AGG
(GTC)	 AG	680-839	GT	AGG
(TAC)	 AG	1259-1411	GT	CGG
(GCG)	 AG	1689-1833	GT	GGG
-recovered snap_scaffold_953-snap.1-T1, internal, 55, 271
-recovered snap_scaffold_953-snap.1-T1, internal, 680, 839
-recovered snap_scaffold_953-snap.1-T1, internal, 1259, 1411
-recovered snap_scaffold_953-snap.1-T1, internal, 1689, 1833
Couldn't classify 119, 271
Sorry, prediction GlimmerHMM_glimmerT_62360-T1 fails validation.
(TCA)	 AG	119-271	GT	AGG
(GTC)	 AG	680-839	GT	AGG
(TAC)	 AG	1259-1322	GT	GCG
(GCG)	 AG	1689-1714	GG	GAG
-recovered GlimmerHMM_glimmerT_62360-T1, terminal, 1689, 1714
-recovered GlimmerHMM_glimmerT_62360-T1, internal, 119, 271
-recovered GlimmerHMM_glimmerT_62360-T1, internal, 680, 839
-recovered GlimmerHMM_glimmerT_62360-T1, internal, 1259, 1322
Couldn't classify 55, 271
Couldn't classify 1689, 1833
Sorry, prediction GeneMark_model.108656_t fails validation.
(GAT)	 AG	55-271	GT	AGG
(GTC)	 AG	680-839	GT	AGG
(TAC)	 AG	1259-1404	GT	CAG
(GGG)	 AG	1445-1453	GT	AGG
(GGG)	 AG	1484-1511	GT	TTG
(GCG)	 AG	1689-1833	GT	GGG
-recovered GeneMark_model.108656_t, internal, 55, 271
-recovered GeneMark_model.108656_t, internal, 680, 839
-recovered GeneMark_model.108656_t, internal, 1259, 1404
-recovered GeneMark_model.108656_t, internal, 1445, 1453
-recovered GeneMark_model.108656_t, internal, 1484, 1511
-recovered GeneMark_model.108656_t, internal, 1689, 1833
Couldn't classify 119, 271
Sorry, prediction Augustus_model.g41455.t1 fails validation.
(TCA)	 AG	119-271	GT	AGG
(GTC)	 AG	680-839	GT	AGG
(TAC)	 AG	1259-1411	GT	CGG
(GCG)	 AG	1689-1833	GT	GGG
(GTC)	 AG	3362-3390	AC	AGA
-recovered Augustus_model.g41455.t1, terminal, 3362, 3390
-recovered Augustus_model.g41455.t1, internal, 119, 271
-recovered Augustus_model.g41455.t1, internal, 680, 839
-recovered Augustus_model.g41455.t1, internal, 1259, 1411
-recovered Augustus_model.g41455.t1, internal, 1689, 1833

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3832
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support