-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_952

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62358-T1
Valid prediction for GlimmerHMM_glimmerT_62359-T1
Couldn't classify 531, 675
Sorry, prediction GeneMark_model.108655_t fails validation.
(CCT)	 AG	531-675	GT	AGG
(ACA)	 AG	770-837	GT	CTG
(AGA)	 AG	1054-1226	GT	ACG
(GGA)	 AG	1266-1271	GT	GGG
(GGA)	 AG	1313-1321	GT	GGG
(GGG)	 AG	2533-2589	GC	AGG
(GGA)	 AG	2613-2621	GT	GGG
(GCG)	 AG	2647-2698	GT	GGG
(AAC)	 AG	2914-2986	GT	TGG
(GTT)	 AG	3038-3330	CT	GAC
-recovered GeneMark_model.108655_t, terminal, 3038, 3330
-recovered GeneMark_model.108655_t, internal, 531, 675
-recovered GeneMark_model.108655_t, internal, 770, 837
-recovered GeneMark_model.108655_t, internal, 1054, 1226
-recovered GeneMark_model.108655_t, internal, 1266, 1271
-recovered GeneMark_model.108655_t, internal, 1313, 1321
-recovered GeneMark_model.108655_t, internal, 2533, 2589
-recovered GeneMark_model.108655_t, internal, 2613, 2621
-recovered GeneMark_model.108655_t, internal, 2647, 2698
-recovered GeneMark_model.108655_t, internal, 2914, 2986
Couldn't classify 770, 837
Sorry, prediction Augustus_model.g41454.t1 fails validation.
(ACA)	 AG	770-837	GT	CTG
(AGA)	 AG	1054-1216	GT	AGG
(GTT)	 AG	3038-3330	CT	GAC
-recovered Augustus_model.g41454.t1, terminal, 3038, 3330
-recovered Augustus_model.g41454.t1, internal, 770, 837
-recovered Augustus_model.g41454.t1, internal, 1054, 1216
Couldn't classify 738, 837
Sorry, prediction snap_scaffold_952-snap.2-T1 fails validation.
(CCC)	 AG	738-837	GT	CTG
(AGA)	 AG	1054-1216	GT	AGG
(GTT)	 AG	3038-3330	CT	GAC
-recovered snap_scaffold_952-snap.2-T1, terminal, 3038, 3330
-recovered snap_scaffold_952-snap.2-T1, internal, 738, 837
-recovered snap_scaffold_952-snap.2-T1, internal, 1054, 1216

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_952-snap.3-T1
Valid prediction for snap_scaffold_952-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3330, rend_intergenic: 1021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3836
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
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18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3330, rend_intergenic: 1021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support