-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_951

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108653_t
Couldn't classify 3757, 3811
Sorry, prediction GeneMark_model.108654_t fails validation.
(ATG)	 GC	3329-3336	GT	AGG
(AGA)	 AG	3359-3379	GT	GAG
(ACT)	 AG	3403-3426	GT	TGG
(CGG)	 AG	3469-3498	GT	AGG
(AGA)	 AG	3523-3528	GT	CGG
(AAA)	 AG	3551-3556	GT	AGG
(AGA)	 AG	3583-3612	GT	CGG
(AGA)	 AG	3637-3642	GT	CGG
(AGA)	 AG	3679-3684	GT	CGG
(ACA)	 AG	3725-3736	GT	AGG
(AGA)	 AG	3757-3811	GC	GAG
-recovered GeneMark_model.108654_t, initial, 3329, 3336
-recovered GeneMark_model.108654_t, internal, 3359, 3379
-recovered GeneMark_model.108654_t, internal, 3403, 3426
-recovered GeneMark_model.108654_t, internal, 3469, 3498
-recovered GeneMark_model.108654_t, internal, 3523, 3528
-recovered GeneMark_model.108654_t, internal, 3551, 3556
-recovered GeneMark_model.108654_t, internal, 3583, 3612
-recovered GeneMark_model.108654_t, internal, 3637, 3642
-recovered GeneMark_model.108654_t, internal, 3679, 3684
-recovered GeneMark_model.108654_t, internal, 3725, 3736
-recovered GeneMark_model.108654_t, internal, 3757, 3811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3310, 3484
Sorry, prediction GeneMark_model.108652_t fails validation.
(ATG)	 AC	3065-3078	GT	ATG
(GAG)	 AG	3193-3288	GT	GAG
(AGG)	 AG	3310-3484	GT	AAG
-recovered GeneMark_model.108652_t, initial, 3065, 3078
-recovered GeneMark_model.108652_t, internal, 3193, 3288
-recovered GeneMark_model.108652_t, internal, 3310, 3484
Couldn't classify 3172, 3288
Couldn't classify 3626, 3781
Sorry, prediction snap_scaffold_951-snap.1-T1 fails validation.
(AGA)	 AG	3172-3288	GT	GAG
(CAC)	 AG	3626-3781	GT	GGG
-recovered snap_scaffold_951-snap.1-T1, internal, 3172, 3288
-recovered snap_scaffold_951-snap.1-T1, internal, 3626, 3781

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3839
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support