-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_950

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2513, 2574
Sorry, prediction GeneMark_model.108651_t fails validation.
(ATG)	 CC	1746-1760	GT	GTG
(GAT)	 AG	1819-1826	GT	TGG
(GCT)	 AG	1860-1907	GT	GAG
(AGA)	 AG	1946-2024	GT	GAG
(AGG)	 AG	2143-2463	GT	ATG
(GAG)	 AG	2513-2574	GT	GGG
-recovered GeneMark_model.108651_t, initial, 1746, 1760
-recovered GeneMark_model.108651_t, internal, 1819, 1826
-recovered GeneMark_model.108651_t, internal, 1860, 1907
-recovered GeneMark_model.108651_t, internal, 1946, 2024
-recovered GeneMark_model.108651_t, internal, 2143, 2463
-recovered GeneMark_model.108651_t, internal, 2513, 2574

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3677, 3825
Sorry, prediction snap_scaffold_950-snap.1-T1 fails validation.
(ATG)	 GA	3538-3598	GT	AGG
(GCG)	 AG	3677-3825	GT	AGG
-recovered snap_scaffold_950-snap.1-T1, initial, 3538, 3598
-recovered snap_scaffold_950-snap.1-T1, internal, 3677, 3825
Couldn't classify 2105, 2253
Sorry, prediction snap_scaffold_950-snap.2-T1 fails validation.
(CCT)	 AG	2105-2253	GT	GGG
(GTT)	 AG	2284-2439	GT	GGG
(GGT)	 AG	2501-2599	GG	GAG
-recovered snap_scaffold_950-snap.2-T1, terminal, 2501, 2599
-recovered snap_scaffold_950-snap.2-T1, internal, 2105, 2253
-recovered snap_scaffold_950-snap.2-T1, internal, 2284, 2439
Couldn't classify 3771, 3825
Sorry, prediction GeneMark_model.108650_t fails validation.
(ATG)	 GG	2123-2139	GT	GGG
(GAC)	 AG	2164-2169	GT	AGG
(GAC)	 AG	2194-2199	GT	AGG
(GTT)	 AG	2236-2253	GT	GGG
(GGT)	 AG	2307-2501	GT	GGG
(GGA)	 AG	3235-3252	GT	GGG
(GAA)	 AG	3275-3313	GT	GAG
(GAG)	 AG	3337-3348	GT	GGG
(GAA)	 AG	3378-3395	GT	GGG
(GGT)	 AG	3422-3463	GT	CAG
(GTT)	 AG	3721-3744	GT	GGG
(GGT)	 AG	3771-3825	GT	AGG
-recovered GeneMark_model.108650_t, initial, 2123, 2139
-recovered GeneMark_model.108650_t, internal, 2164, 2169
-recovered GeneMark_model.108650_t, internal, 2194, 2199
-recovered GeneMark_model.108650_t, internal, 2236, 2253
-recovered GeneMark_model.108650_t, internal, 2307, 2501
-recovered GeneMark_model.108650_t, internal, 3235, 3252
-recovered GeneMark_model.108650_t, internal, 3275, 3313
-recovered GeneMark_model.108650_t, internal, 3337, 3348
-recovered GeneMark_model.108650_t, internal, 3378, 3395
-recovered GeneMark_model.108650_t, internal, 3422, 3463
-recovered GeneMark_model.108650_t, internal, 3721, 3744
-recovered GeneMark_model.108650_t, internal, 3771, 3825

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3842
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support