-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_949

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2808, 2888
Sorry, prediction GeneMark_model.108649_t fails validation.
(AGG)	 AG	2808-2888	GT	AGG
(GGA)	 AG	2953-2967	GT	AAG
(ATG)	 AG	2992-3021	GT	ACG
(AGA)	 AG	3235-3363	GT	CAG
(AGA)	 AG	3389-3415	GC	GAG
(CGA)	 AG	3437-3466	GT	GAG
(TAA)	 AG	3648-3656	GT	CTG
(GGG)	 AG	3686-3694	GT	ACG
(GAG)	 AG	3732-3759	AG	GAA
-recovered GeneMark_model.108649_t, initial, 2992, 3021
-recovered GeneMark_model.108649_t, terminal, 3732, 3759
-recovered GeneMark_model.108649_t, internal, 2808, 2888
-recovered GeneMark_model.108649_t, internal, 2953, 2967
-recovered GeneMark_model.108649_t, internal, 2992, 3021
-recovered GeneMark_model.108649_t, internal, 3235, 3363
-recovered GeneMark_model.108649_t, internal, 3389, 3415
-recovered GeneMark_model.108649_t, internal, 3437, 3466
-recovered GeneMark_model.108649_t, internal, 3648, 3656
-recovered GeneMark_model.108649_t, internal, 3686, 3694

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3844
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support