-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_948

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 826, 876
Couldn't classify 3470, 3574
Sorry, prediction GeneMark_model.108648_t fails validation.
(AGA)	 AG	826-876	GT	GGG
(GCA)	 AG	1673-1720	GT	AGG
(AGA)	 AG	2959-2991	GT	GAG
(AGA)	 AG	3161-3331	GT	AGG
(GGA)	 AG	3352-3375	GC	AGG
(GGG)	 AG	3410-3442	GT	GGG
(AGA)	 AG	3470-3574	GT	AGG
-recovered GeneMark_model.108648_t, internal, 826, 876
-recovered GeneMark_model.108648_t, internal, 1673, 1720
-recovered GeneMark_model.108648_t, internal, 2959, 2991
-recovered GeneMark_model.108648_t, internal, 3161, 3331
-recovered GeneMark_model.108648_t, internal, 3352, 3375
-recovered GeneMark_model.108648_t, internal, 3410, 3442
-recovered GeneMark_model.108648_t, internal, 3470, 3574

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62357-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3865
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support