-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_945

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 289, 434
Couldn't classify 3755, 3833
Sorry, prediction snap_scaffold_945-snap.2-T1 fails validation.
(GAT)	 AG	289-434	GT	TGG
(CAC)	 AG	984-1050	GT	TGG
(ACG)	 AG	1059-1132	GT	AAG
(GTC)	 AG	1693-1872	GT	TCG
(CTT)	 AG	2615-2812	GT	TTG
(ACG)	 AG	3755-3833	GT	AGG
-recovered snap_scaffold_945-snap.2-T1, internal, 289, 434
-recovered snap_scaffold_945-snap.2-T1, internal, 984, 1050
-recovered snap_scaffold_945-snap.2-T1, internal, 1059, 1132
-recovered snap_scaffold_945-snap.2-T1, internal, 1693, 1872
-recovered snap_scaffold_945-snap.2-T1, internal, 2615, 2812
-recovered snap_scaffold_945-snap.2-T1, internal, 3755, 3833
Sorry, intron length (7) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 71, 169
Couldn't classify 3830, 3843
Sorry, prediction GeneMark_model.108645_t fails validation.
(GTG)	 AG	71-169	GT	AGG
(GTG)	 AG	601-757	GT	AGG
(GTG)	 AG	1131-1341	GT	CGG
(GGG)	 AG	1371-1379	GT	GGG
(GAG)	 AG	1405-1416	GT	TTG
(AGG)	 AG	1440-1457	GT	TTG
(GGG)	 AG	1482-1487	GT	GGG
(GAA)	 AG	1515-1592	GT	TTG
(ACA)	 AG	1617-1643	GT	GTG
(AGG)	 AG	1671-1709	GT	AGG
(GTA)	 AG	1988-2281	GC	AGG
(GGA)	 AG	2307-2318	GC	GCG
(GAG)	 AG	2343-2402	GT	AGG
(AGG)	 AG	2428-2493	GC	GCG
(GAG)	 AG	2517-2630	GC	GCG
(CAC)	 AG	2652-2693	GT	GGG
(CCC)	 AG	2724-2922	GT	GGG
(GTG)	 AG	3465-3644	GT	AGG
(GCC)	 AG	3830-3843	GT	TCG
-recovered GeneMark_model.108645_t, internal, 71, 169
-recovered GeneMark_model.108645_t, internal, 601, 757
-recovered GeneMark_model.108645_t, internal, 1131, 1341
-recovered GeneMark_model.108645_t, internal, 1371, 1379
-recovered GeneMark_model.108645_t, internal, 1405, 1416
-recovered GeneMark_model.108645_t, internal, 1440, 1457
-recovered GeneMark_model.108645_t, internal, 1482, 1487
-recovered GeneMark_model.108645_t, internal, 1515, 1592
-recovered GeneMark_model.108645_t, internal, 1617, 1643
-recovered GeneMark_model.108645_t, internal, 1671, 1709
-recovered GeneMark_model.108645_t, internal, 1988, 2281
-recovered GeneMark_model.108645_t, internal, 2307, 2318
-recovered GeneMark_model.108645_t, internal, 2343, 2402
-recovered GeneMark_model.108645_t, internal, 2428, 2493
-recovered GeneMark_model.108645_t, internal, 2517, 2630
-recovered GeneMark_model.108645_t, internal, 2652, 2693
-recovered GeneMark_model.108645_t, internal, 2724, 2922
-recovered GeneMark_model.108645_t, internal, 3465, 3644
-recovered GeneMark_model.108645_t, internal, 3830, 3843
Couldn't classify 71, 169
Couldn't classify 3830, 3869
Sorry, prediction Augustus_model.g41452.t1 fails validation.
(GTG)	 AG	71-169	GT	AGG
(GTG)	 AG	601-757	GT	AGG
(GTG)	 AG	1131-1341	GT	CGG
(GTA)	 AG	1988-2183	GT	AGG
(GCC)	 AG	2758-2922	GT	GGG
(GTG)	 AG	3465-3644	GT	AGG
(GCC)	 AG	3830-3869		CC
-recovered Augustus_model.g41452.t1, internal, 71, 169
-recovered Augustus_model.g41452.t1, internal, 601, 757
-recovered Augustus_model.g41452.t1, internal, 1131, 1341
-recovered Augustus_model.g41452.t1, internal, 1988, 2183
-recovered Augustus_model.g41452.t1, internal, 2758, 2922
-recovered Augustus_model.g41452.t1, internal, 3465, 3644
Couldn't classify 71, 169
Couldn't classify 3465, 3644
Sorry, prediction snap_scaffold_945-snap.1-T1 fails validation.
(GTG)	 AG	71-169	GT	AGG
(GTG)	 AG	601-757	GT	AGG
(GTG)	 AG	1131-1341	GT	CGG
(GTA)	 AG	1988-2183	GT	AGG
(CGC)	 AG	2207-2677	GT	GAG
(GCC)	 AG	2758-2922	GT	GGG
(GTG)	 AG	3465-3644	GT	AGG
-recovered snap_scaffold_945-snap.1-T1, internal, 71, 169
-recovered snap_scaffold_945-snap.1-T1, internal, 601, 757
-recovered snap_scaffold_945-snap.1-T1, internal, 1131, 1341
-recovered snap_scaffold_945-snap.1-T1, internal, 1988, 2183
-recovered snap_scaffold_945-snap.1-T1, internal, 2207, 2677
-recovered snap_scaffold_945-snap.1-T1, internal, 2758, 2922
-recovered snap_scaffold_945-snap.1-T1, internal, 3465, 3644
Valid prediction for GlimmerHMM_glimmerT_62354-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3799, rend_intergenic: 289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3869
-exon list size: 67


building trellis

1.4    
2.9    
4.3    
5.8    
7.2    
8.7    
10.1    
11.6    
13.0    
14.5    
15.9    
17.4    
18.8    
20.3    
21.7    
23.2    
24.6    
26.1    
27.5    
29.0    
30.4    
31.9    
33.3    
34.8    
36.2    
37.7    
39.1    
40.6    
42.0    
43.5    
44.9    
46.4    
47.8    
49.3    
50.7    
52.2    
53.6    
55.1    
56.5    
58.0    
59.4    
60.9    
62.3    
63.8    
65.2    
66.7    
68.1    
69.6    
71.0    
72.5    
73.9    
75.4    
76.8    
78.3    
79.7    
81.2    
82.6    
84.1    
85.5    
87.0    
88.4    
89.9    
91.3    
92.8    
94.2    
95.7    
97.1    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3799, rend_intergenic: 289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support