-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_944

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62352-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62352-T1 213-531-terminal-1 is invalid.
Couldn't classify 213, 430
Couldn't classify 3506, 3687
Sorry, prediction snap_scaffold_944-snap.1-T1 fails validation.
(GTT)	 AG	213-430	GT	CGG
(ACA)	 AG	3506-3687	GT	AGG
-recovered snap_scaffold_944-snap.1-T1, internal, 213, 430
-recovered snap_scaffold_944-snap.1-T1, internal, 3506, 3687

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 158, 305
Sorry, prediction GlimmerHMM_glimmerT_62353-T1 fails validation.
(TCG)	 AG	158-305	GT	GAG
(GCG)	 AG	2856-2925	TG	GAT
-recovered GlimmerHMM_glimmerT_62353-T1, terminal, 2856, 2925
-recovered GlimmerHMM_glimmerT_62353-T1, internal, 158, 305
Couldn't classify 158, 355
Couldn't classify 3486, 3599
Sorry, prediction Augustus_model.g41451.t1 fails validation.
(TCG)	 AG	158-355	GT	CGG
(GTC)	 AG	3486-3599	GT	GGG
-recovered Augustus_model.g41451.t1, internal, 158, 355
-recovered Augustus_model.g41451.t1, internal, 3486, 3599
Couldn't classify 158, 305
Couldn't classify 3486, 3599
Sorry, prediction GeneMark_model.108644_t fails validation.
(TCG)	 AG	158-305	GT	GAG
(TGT)	 AG	497-504	GT	GGG
(GTC)	 AG	3486-3599	GT	GGG
-recovered GeneMark_model.108644_t, internal, 158, 305
-recovered GeneMark_model.108644_t, internal, 497, 504
-recovered GeneMark_model.108644_t, internal, 3486, 3599
Couldn't classify 158, 355
Couldn't classify 3486, 3599
Sorry, prediction snap_scaffold_944-snap.2-T1 fails validation.
(TCG)	 AG	158-355	GT	CGG
(GTC)	 AG	3486-3599	GT	GGG
-recovered snap_scaffold_944-snap.2-T1, internal, 158, 355
-recovered snap_scaffold_944-snap.2-T1, internal, 3486, 3599

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3687, rend_intergenic: 275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3873
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3687, rend_intergenic: 275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support