-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_943

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 113, 416
Sorry, prediction Augustus_model.g41450.t1 fails validation.
(GAC)	 AG	113-416	GT	GGG
(CTC)	 AG	573-616	AA	AAA
-recovered Augustus_model.g41450.t1, terminal, 573, 616
-recovered Augustus_model.g41450.t1, internal, 113, 416
Couldn't classify 113, 416
Sorry, prediction snap_scaffold_943-snap.1-T1 fails validation.
(GAC)	 AG	113-416	GT	GGG
(GGC)	 AG	1142-1210	GT	GTG
(ATG)	 AG	2897-2904	CT	AGC
-recovered snap_scaffold_943-snap.1-T1, terminal, 2897, 2904
-recovered snap_scaffold_943-snap.1-T1, internal, 113, 416
-recovered snap_scaffold_943-snap.1-T1, internal, 1142, 1210
Couldn't classify 14, 165
Sorry, prediction GeneMark_model.108643_t fails validation.
(GAG)	 AG	14-165	GT	GAG
(GTT)	 AG	191-416	GT	GGG
(GGC)	 AG	1142-1274	GC	GGG
(GAG)	 AG	2553-2624	GT	AGG
(AGT)	 AG	2658-2669	GT	AGG
(AGA)	 AG	2690-2701	GT	AGG
(AAG)	 AG	2728-2785	GG	GAG
-recovered GeneMark_model.108643_t, terminal, 2728, 2785
-recovered GeneMark_model.108643_t, internal, 14, 165
-recovered GeneMark_model.108643_t, internal, 191, 416
-recovered GeneMark_model.108643_t, internal, 1142, 1274
-recovered GeneMark_model.108643_t, internal, 2553, 2624
-recovered GeneMark_model.108643_t, internal, 2658, 2669
-recovered GeneMark_model.108643_t, internal, 2690, 2701

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62351-T1
Valid prediction for CodingQuarry_transcript_62323-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3878
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support