-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_942

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2102, 2206
Couldn't classify 2478, 2621
Sorry, prediction GeneMark_model.108642_t fails validation.
(AGA)	 AG	2102-2206	GT	ATG
(AGG)	 AG	2295-2456	GC	GAG
(GGA)	 AG	2478-2621	GT	GAG
-recovered GeneMark_model.108642_t, internal, 2102, 2206
-recovered GeneMark_model.108642_t, internal, 2295, 2456
-recovered GeneMark_model.108642_t, internal, 2478, 2621
Couldn't classify 1555, 1623
Sorry, prediction snap_scaffold_942-snap.1-T1 fails validation.
(ACT)	 AG	1555-1623	GT	AGG
(GCC)	 AG	2072-2222	GT	GAG
-recovered snap_scaffold_942-snap.1-T1, terminal, 2072, 2222
-recovered snap_scaffold_942-snap.1-T1, internal, 1555, 1623
-recovered snap_scaffold_942-snap.1-T1, internal, 2072, 2222

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3886
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support