-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_941

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 428, 557
Couldn't classify 3657, 3790
Sorry, prediction snap_scaffold_941-snap.1-T1 fails validation.
(AGG)	 AG	428-557	GT	CGG
(TGT)	 AG	3141-3250	GT	CAG
(GCT)	 AG	3657-3790	GT	AGG
-recovered snap_scaffold_941-snap.1-T1, internal, 428, 557
-recovered snap_scaffold_941-snap.1-T1, internal, 3141, 3250
-recovered snap_scaffold_941-snap.1-T1, internal, 3657, 3790
Couldn't classify 61, 108
Sorry, prediction GeneMark_model.108640_t fails validation.
(GGG)	 AG	61-108	GT	GGG
(AGG)	 AG	428-532	GT	GAG
(AGA)	 AG	1660-1770	GT	GGG
(GGA)	 AG	1794-1832	GT	GGG
(GAT)	 AG	1857-1927	GT	CAG
(ACA)	 AG	2160-2166	GT	CGG
(ACA)	 AG	2193-2201	GT	GGG
(GGT)	 AG	2231-2410	GT	TGG
(GGG)	 AG	2439-2453	GT	GGG
(ACA)	 AG	2486-2612	CC	GAC
-recovered GeneMark_model.108640_t, terminal, 2486, 2612
-recovered GeneMark_model.108640_t, internal, 61, 108
-recovered GeneMark_model.108640_t, internal, 428, 532
-recovered GeneMark_model.108640_t, internal, 1660, 1770
-recovered GeneMark_model.108640_t, internal, 1794, 1832
-recovered GeneMark_model.108640_t, internal, 1857, 1927
-recovered GeneMark_model.108640_t, internal, 2160, 2166
-recovered GeneMark_model.108640_t, internal, 2193, 2201
-recovered GeneMark_model.108640_t, internal, 2231, 2410
-recovered GeneMark_model.108640_t, internal, 2439, 2453

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 32, 169
Sorry, prediction GeneMark_model.108641_t fails validation.
(AGG)	 AG	32-169	GT	CAG
(GGC)	 AG	200-325	GT	CAG
(GGA)	 AG	785-823	GT	CAG
(TGG)	 AG	851-859	GT	GAG
(TGG)	 AG	883-915	GT	CAG
(ACA)	 AG	939-977	GT	CAG
(GAC)	 AG	1003-1023	GT	CAG
(ACA)	 AG	1047-1055	GT	GAG
(AGA)	 AG	1081-1098	GC	AGG
(AGA)	 AG	1125-1178	GC	AGG
(ATA)	 AG	1201-1204	GG	AGG
-recovered GeneMark_model.108641_t, terminal, 1201, 1204
-recovered GeneMark_model.108641_t, internal, 32, 169
-recovered GeneMark_model.108641_t, internal, 200, 325
-recovered GeneMark_model.108641_t, internal, 785, 823
-recovered GeneMark_model.108641_t, internal, 851, 859
-recovered GeneMark_model.108641_t, internal, 883, 915
-recovered GeneMark_model.108641_t, internal, 939, 977
-recovered GeneMark_model.108641_t, internal, 1003, 1023
-recovered GeneMark_model.108641_t, internal, 1047, 1055
-recovered GeneMark_model.108641_t, internal, 1081, 1098
-recovered GeneMark_model.108641_t, internal, 1125, 1178

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3899
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support