-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_939

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3099, 3314
Sorry, prediction GeneMark_model.108637_t fails validation.
(ATG)	 GC	2386-2823	GT	TGG
(ATC)	 AG	3099-3314	GT	AGG
-recovered GeneMark_model.108637_t, initial, 2386, 2823
-recovered GeneMark_model.108637_t, internal, 3099, 3314
Couldn't classify 3053, 3314
Sorry, prediction snap_scaffold_939-snap.1-T1 fails validation.
(ATG)	 GC	2386-2795	GT	CAG
(ACG)	 AG	3053-3314	GT	AGG
-recovered snap_scaffold_939-snap.1-T1, initial, 2386, 2795
-recovered snap_scaffold_939-snap.1-T1, internal, 3053, 3314
Valid prediction for GlimmerHMM_glimmerT_62350-T1
Couldn't classify 3078, 3314
Sorry, prediction Augustus_model.g41448.t1 fails validation.
(ATG)	 CC	1816-1975	GT	TGG
(ACC)	 AG	2069-2119	GT	CGG
(ATA)	 AG	2276-2823	GT	TGG
(AAT)	 AG	3078-3314	GT	AGG
-recovered Augustus_model.g41448.t1, initial, 1816, 1975
-recovered Augustus_model.g41448.t1, internal, 2069, 2119
-recovered Augustus_model.g41448.t1, internal, 2276, 2823
-recovered Augustus_model.g41448.t1, internal, 3078, 3314

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3912
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support