-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_938

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108636_t
Couldn't classify 102, 127
Sorry, prediction GeneMark_model.108634_t fails validation.
(GCA)	 AG	102-127	GT	CTG
(GGA)	 AG	155-205	GC	ATG
(TGT)	 AG	309-317	GT	GAG
(AGC)	 AG	419-449	GT	CAG
(GGT)	 AG	556-566	GT	GAG
(AAA)	 AG	638-667	GT	GAG
(AGA)	 AG	689-772	GT	GAG
(CGC)	 AG	798-851	GT	GAG
(AGG)	 AG	884-937	GT	GAG
(AGT)	 AG	968-985	GT	GGG
(AGA)	 AG	1012-1024	AT	AAA
-recovered GeneMark_model.108634_t, terminal, 1012, 1024
-recovered GeneMark_model.108634_t, internal, 102, 127
-recovered GeneMark_model.108634_t, internal, 155, 205
-recovered GeneMark_model.108634_t, internal, 309, 317
-recovered GeneMark_model.108634_t, internal, 419, 449
-recovered GeneMark_model.108634_t, internal, 556, 566
-recovered GeneMark_model.108634_t, internal, 638, 667
-recovered GeneMark_model.108634_t, internal, 689, 772
-recovered GeneMark_model.108634_t, internal, 798, 851
-recovered GeneMark_model.108634_t, internal, 884, 937
-recovered GeneMark_model.108634_t, internal, 968, 985
Couldn't classify 1945, 2187
Sorry, prediction snap_scaffold_938-snap.2-T1 fails validation.
(ATG)	 GG	170-322	GT	AGG
(GGT)	 AG	556-851	GT	GAG
(GCA)	 AG	1945-2187	GT	GAG
-recovered snap_scaffold_938-snap.2-T1, initial, 170, 322
-recovered snap_scaffold_938-snap.2-T1, internal, 556, 851
-recovered snap_scaffold_938-snap.2-T1, internal, 1945, 2187

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108635_t
Couldn't classify 3793, 3866
Sorry, prediction Augustus_model.g41447.t1 fails validation.
(ATG)	 TC	1233-1235	GT	TGG
(GGC)	 AG	1954-2095	GT	GAG
(GGT)	 AG	3793-3866	GT	AAG
-recovered Augustus_model.g41447.t1, initial, 1233, 1235
-recovered Augustus_model.g41447.t1, internal, 1954, 2095
-recovered Augustus_model.g41447.t1, internal, 3793, 3866
Couldn't classify 369, 398
Couldn't classify 3793, 3866
Sorry, prediction snap_scaffold_938-snap.1-T1 fails validation.
(GGG)	 AG	369-398	GT	CGG
(GGC)	 AG	1954-2095	GT	GAG
(GGT)	 AG	3793-3866	GT	AAG
-recovered snap_scaffold_938-snap.1-T1, internal, 369, 398
-recovered snap_scaffold_938-snap.1-T1, internal, 1954, 2095
-recovered snap_scaffold_938-snap.1-T1, internal, 3793, 3866

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3549, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3917
-exon list size: 46


building trellis

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14.6    
16.7    
18.8    
20.8    
22.9    
25.0    
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31.2    
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35.4    
37.5    
39.6    
41.7    
43.8    
45.8    
47.9    
50.0    
52.1    
54.2    
56.2    
58.3    
60.4    
62.5    
64.6    
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70.8    
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79.2    
81.2    
83.3    
85.4    
87.5    
89.6    
91.7    
93.8    
95.8    
97.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3549, rend_intergenic: 170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support