-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_934

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 223, 732
Sorry, prediction snap_scaffold_934-snap.1-T1 fails validation.
(GGC)	 AG	223-732	GT	AAG
(AAG)	 AG	1677-1798	AT	AGA
-recovered snap_scaffold_934-snap.1-T1, terminal, 1677, 1798
-recovered snap_scaffold_934-snap.1-T1, internal, 223, 732
Valid prediction for GlimmerHMM_glimmerT_62346-T1
Valid prediction for Augustus_model.g41445.t1
Valid prediction for GeneMark_model.108628_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11, 94
Sorry, prediction GeneMark_model.108629_t fails validation.
(GGG)	 AG	11-94	GT	AGG
(CAG)	 AG	249-273	GT	AGG
(GAC)	 AG	857-888	GT	GGG
(AGG)	 AG	909-983	GT	GAG
(AGG)	 AG	1029-1034	GT	GAG
(AGG)	 AG	1057-1065	GT	GAG
(AGA)	 AG	1086-1142	GT	GGG
(AGA)	 AG	1174-1221	GT	GAG
(AAG)	 AG	1242-1256	GT	GGG
(ACA)	 AG	1280-1289	TA	GAT
-recovered GeneMark_model.108629_t, terminal, 1280, 1289
-recovered GeneMark_model.108629_t, internal, 11, 94
-recovered GeneMark_model.108629_t, internal, 249, 273
-recovered GeneMark_model.108629_t, internal, 857, 888
-recovered GeneMark_model.108629_t, internal, 909, 983
-recovered GeneMark_model.108629_t, internal, 1029, 1034
-recovered GeneMark_model.108629_t, internal, 1057, 1065
-recovered GeneMark_model.108629_t, internal, 1086, 1142
-recovered GeneMark_model.108629_t, internal, 1174, 1221
-recovered GeneMark_model.108629_t, internal, 1242, 1256
Couldn't classify 857, 969
Couldn't classify 3229, 3699
Sorry, prediction snap_scaffold_934-snap.2-T1 fails validation.
(GAC)	 AG	857-969	GT	GGG
(CCA)	 AG	3229-3699	GT	CTG
-recovered snap_scaffold_934-snap.2-T1, internal, 857, 969
-recovered snap_scaffold_934-snap.2-T1, internal, 3229, 3699

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1798, rend_intergenic: 234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3932
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1798, rend_intergenic: 234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support