-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_933

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 246, 483
Couldn't classify 2988, 3136
Sorry, prediction GeneMark_model.108627_t fails validation.
(CTG)	 AG	246-483	GT	AGG
(GTC)	 AG	705-890	GT	AGG
(GTT)	 AG	1002-1018	GT	CTG
(GTG)	 AG	1424-1550	GT	TGG
(GCA)	 AG	1995-2005	GT	TGG
(GCA)	 AG	2179-2279	GT	GGG
(TCT)	 AG	2462-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(ACC)	 AG	2988-3136	GT	CAG
-recovered GeneMark_model.108627_t, internal, 246, 483
-recovered GeneMark_model.108627_t, internal, 705, 890
-recovered GeneMark_model.108627_t, internal, 1002, 1018
-recovered GeneMark_model.108627_t, internal, 1424, 1550
-recovered GeneMark_model.108627_t, internal, 1995, 2005
-recovered GeneMark_model.108627_t, internal, 2179, 2279
-recovered GeneMark_model.108627_t, internal, 2462, 2543
-recovered GeneMark_model.108627_t, internal, 2691, 2846
-recovered GeneMark_model.108627_t, internal, 2988, 3136
Valid prediction for pasa_asmbl_55799.p1
Valid prediction for GlimmerHMM_glimmerT_62344-T1
Valid prediction for GlimmerHMM_glimmerT_62345-T1
Couldn't classify 246, 483
Sorry, prediction snap_scaffold_933-snap.1-T1 fails validation.
(CTG)	 AG	246-483	GT	AGG
(GTC)	 AG	705-890	GT	AGG
(GTT)	 AG	1002-1103	GT	TGG
(GTG)	 AG	1205-1332	GT	AGG
(GTG)	 AG	1424-1550	GT	TGG
(GCA)	 AG	1995-2041	GT	TGG
(GCA)	 AG	2179-2279	GT	GGG
(TCT)	 AG	2462-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(GTT)	 AG	2931-3140	CC	GAC
-recovered snap_scaffold_933-snap.1-T1, terminal, 2931, 3140
-recovered snap_scaffold_933-snap.1-T1, internal, 246, 483
-recovered snap_scaffold_933-snap.1-T1, internal, 705, 890
-recovered snap_scaffold_933-snap.1-T1, internal, 1002, 1103
-recovered snap_scaffold_933-snap.1-T1, internal, 1205, 1332
-recovered snap_scaffold_933-snap.1-T1, internal, 1424, 1550
-recovered snap_scaffold_933-snap.1-T1, internal, 1995, 2041
-recovered snap_scaffold_933-snap.1-T1, internal, 2179, 2279
-recovered snap_scaffold_933-snap.1-T1, internal, 2462, 2543
-recovered snap_scaffold_933-snap.1-T1, internal, 2691, 2846
Couldn't classify 246, 483
Sorry, prediction Augustus_model.g41444.t1 fails validation.
(CTG)	 AG	246-483	GT	AGG
(GTC)	 AG	705-890	GT	AGG
(GTT)	 AG	1002-1103	GT	TGG
(GTG)	 AG	1205-1332	GT	AGG
(GTG)	 AG	1424-1550	GT	TGG
(GCA)	 AG	1995-2054	GT	TGG
(TAG)	 AG	2138-2279	GT	GGG
(TCT)	 AG	2462-2543	GT	AGG
(GAT)	 AG	2691-2846	GT	AGG
(GTT)	 AG	2931-3140	CC	GAC
-recovered Augustus_model.g41444.t1, terminal, 2931, 3140
-recovered Augustus_model.g41444.t1, internal, 246, 483
-recovered Augustus_model.g41444.t1, internal, 705, 890
-recovered Augustus_model.g41444.t1, internal, 1002, 1103
-recovered Augustus_model.g41444.t1, internal, 1205, 1332
-recovered Augustus_model.g41444.t1, internal, 1424, 1550
-recovered Augustus_model.g41444.t1, internal, 1995, 2054
-recovered Augustus_model.g41444.t1, internal, 2138, 2279
-recovered Augustus_model.g41444.t1, internal, 2462, 2543
-recovered Augustus_model.g41444.t1, internal, 2691, 2846

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3939
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support