-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_932

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 491, 526
Sorry, prediction GeneMark_model.108626_t fails validation.
(AGG)	 AG	491-526	GT	GAG
(GAT)	 AG	551-589	GT	GAG
(GAG)	 AG	620-817	GC	GAG
(AGA)	 AG	843-890	GC	AGG
(AGA)	 AG	913-966	GC	AGG
(GGA)	 AG	1001-1021	GT	CAG
(GGA)	 AG	1642-1647	GT	AAG
(GGA)	 AG	1680-1727	GT	AGG
(GGG)	 AG	1761-1769	GT	AAG
(AAA)	 AG	1803-1814	GT	ACG
(AGC)	 AG	1840-1855	AA	AGA
-recovered GeneMark_model.108626_t, terminal, 1840, 1855
-recovered GeneMark_model.108626_t, internal, 491, 526
-recovered GeneMark_model.108626_t, internal, 551, 589
-recovered GeneMark_model.108626_t, internal, 620, 817
-recovered GeneMark_model.108626_t, internal, 843, 890
-recovered GeneMark_model.108626_t, internal, 913, 966
-recovered GeneMark_model.108626_t, internal, 1001, 1021
-recovered GeneMark_model.108626_t, internal, 1642, 1647
-recovered GeneMark_model.108626_t, internal, 1680, 1727
-recovered GeneMark_model.108626_t, internal, 1761, 1769
-recovered GeneMark_model.108626_t, internal, 1803, 1814
Valid prediction for GlimmerHMM_glimmerT_62343-T1
Valid prediction for snap_scaffold_932-snap.1-T1
add_exon() Sorry, snap_scaffold_932-snap.1-T1 443-938-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 109, 142
Couldn't classify 1845, 2015
Sorry, prediction snap_scaffold_932-snap.2-T1 fails validation.
(ACG)	 AG	109-142	GT	TGG
(GTG)	 AG	1845-2015	GT	GGG
-recovered snap_scaffold_932-snap.2-T1, internal, 109, 142
-recovered snap_scaffold_932-snap.2-T1, internal, 1845, 2015

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3939
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support